BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015986
         (397 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AV7|A Chain A, Structure Determination Of The Double Mutant S233y F250g
           From The Sec-Alkyl Sulfatase Pisa1
 pdb|4AV7|B Chain B, Structure Determination Of The Double Mutant S233y F250g
           From The Sec-Alkyl Sulfatase Pisa1
 pdb|4AV7|C Chain C, Structure Determination Of The Double Mutant S233y F250g
           From The Sec-Alkyl Sulfatase Pisa1
 pdb|4AV7|D Chain D, Structure Determination Of The Double Mutant S233y F250g
           From The Sec-Alkyl Sulfatase Pisa1
 pdb|4AV7|E Chain E, Structure Determination Of The Double Mutant S233y F250g
           From The Sec-Alkyl Sulfatase Pisa1
 pdb|4AV7|F Chain F, Structure Determination Of The Double Mutant S233y F250g
           From The Sec-Alkyl Sulfatase Pisa1
          Length = 668

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 224 LPTNLDEE--TSSLPGWIVESNRAV--RYIDSYHYS---------VPQGKRAIELLSGKE 270
           LP  LD +    S  G +  + RAV  RY+  Y  +         V  GKR +E + G +
Sbjct: 403 LPGELDRKWYLRSYYGALSTNLRAVYQRYLGFYDGNPANLDPFPPVEAGKRYVEAMGGAD 462

Query: 271 GIISQMVETMANKDYSLTFSLGH 293
            ++ QM   +   DY     LG+
Sbjct: 463 AVLKQMRAAIDKGDYRWAVQLGN 485


>pdb|2YHE|A Chain A, Structure Determination Of The Stereoselective Inverting
           Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
 pdb|2YHE|B Chain B, Structure Determination Of The Stereoselective Inverting
           Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
 pdb|2YHE|C Chain C, Structure Determination Of The Stereoselective Inverting
           Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
 pdb|2YHE|D Chain D, Structure Determination Of The Stereoselective Inverting
           Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
 pdb|2YHE|E Chain E, Structure Determination Of The Stereoselective Inverting
           Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
 pdb|2YHE|F Chain F, Structure Determination Of The Stereoselective Inverting
           Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
 pdb|4AXH|A Chain A, Structure And Mechanism Of The First Inverting
           Alkylsulfatase Specific For Secondary Alkylsulfatases
 pdb|4AXH|B Chain B, Structure And Mechanism Of The First Inverting
           Alkylsulfatase Specific For Secondary Alkylsulfatases
          Length = 668

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 224 LPTNLDEE--TSSLPGWIVESNRAV--RYIDSYHYS---------VPQGKRAIELLSGKE 270
           LP  LD +    S  G +  + RAV  RY+  Y  +         V  GKR +E + G +
Sbjct: 403 LPGELDRKWYLRSYYGALSTNLRAVYQRYLGFYDGNPANLDPFPPVEAGKRYVEAMGGAD 462

Query: 271 GIISQMVETMANKDYSLTFSLGH 293
            ++ QM   +   DY     LG+
Sbjct: 463 AVLKQMRAAIDKGDYRWAVQLGN 485


>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis
          Length = 431

 Score = 29.3 bits (64), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 47  HGFPSESIADGPTEIPSWKLNGTVELVSSGQK 78
           HG P + + DG       KLNG  E+V++G +
Sbjct: 355 HGLPQQEVKDGKVFHAGTKLNGNHEVVTNGGR 386


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,575,335
Number of Sequences: 62578
Number of extensions: 488283
Number of successful extensions: 1025
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 9
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)