BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015986
         (397 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4QN38|RRAA_HAEI8 Regulator of ribonuclease activity A OS=Haemophilus influenzae
           (strain 86-028NP) GN=rraA PE=3 SV=1
          Length = 162

 Score = 32.3 bits (72), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 59  TEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLG-NDAEISQEVKVEKGSTYSVTF 117
           T +  ++ NG +  V     +G +++I   G  AVR G  DAE++Q + V+ G    + +
Sbjct: 37  TTVKCFESNGLIAEVLEENGEGRVLVI--DGGGAVRRGLIDAELAQ-LAVDNGWEGIIVY 93

Query: 118 SAARTCAQLESLNVSV 133
            A R   QLE+L++ +
Sbjct: 94  GAVRQIQQLENLDIGI 109


>sp|P44738|RRAA_HAEIN Regulator of ribonuclease activity A OS=Haemophilus influenzae
           (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rraA PE=3
           SV=1
          Length = 162

 Score = 32.3 bits (72), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 59  TEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLG-NDAEISQEVKVEKGSTYSVTF 117
           T +  ++ NG +  V     +G +++I   G  AVR G  DAE++Q + V+ G    + +
Sbjct: 37  TTVKCFESNGLIAEVLEENGEGRVLVI--DGGGAVRRGLIDAELAQ-LAVDNGWEGIIVY 93

Query: 118 SAARTCAQLESLNVSV 133
            A R   QLE+L++ +
Sbjct: 94  GAVRQIQQLENLDIGI 109


>sp|A5UH15|RRAA_HAEIG Regulator of ribonuclease activity A OS=Haemophilus influenzae
           (strain PittGG) GN=rraA PE=3 SV=1
          Length = 162

 Score = 32.3 bits (72), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 59  TEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLG-NDAEISQEVKVEKGSTYSVTF 117
           T +  ++ NG +  V     +G +++I   G  AVR G  DAE++Q + V+ G    + +
Sbjct: 37  TTVKCFESNGLIAEVLEENGEGRVLVI--DGGGAVRRGLIDAELAQ-LAVDNGWEGIIVY 93

Query: 118 SAARTCAQLESLNVSV 133
            A R   QLE+L++ +
Sbjct: 94  GAVRQIQQLENLDIGI 109


>sp|A5U9Y3|RRAA_HAEIE Regulator of ribonuclease activity A OS=Haemophilus influenzae
           (strain PittEE) GN=rraA PE=3 SV=1
          Length = 162

 Score = 32.3 bits (72), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 59  TEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLG-NDAEISQEVKVEKGSTYSVTF 117
           T +  ++ NG +  V     +G +++I   G  AVR G  DAE++Q + V+ G    + +
Sbjct: 37  TTVKCFESNGLIAEVLEENGEGRVLVI--DGGGAVRRGLIDAELAQ-LAVDNGWEGIIVY 93

Query: 118 SAARTCAQLESLNVSV 133
            A R   QLE+L++ +
Sbjct: 94  GAVRQIQQLENLDIGI 109


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,727,711
Number of Sequences: 539616
Number of extensions: 6442072
Number of successful extensions: 14393
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14393
Number of HSP's gapped (non-prelim): 4
length of query: 397
length of database: 191,569,459
effective HSP length: 120
effective length of query: 277
effective length of database: 126,815,539
effective search space: 35127904303
effective search space used: 35127904303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)