Query 015986
Match_columns 397
No_of_seqs 175 out of 273
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:45:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03089 hypothetical protein; 100.0 3E-112 8E-117 850.0 42.7 363 13-375 5-370 (373)
2 PF04862 DUF642: Protein of un 100.0 1.3E-44 2.8E-49 326.8 19.8 157 34-190 1-159 (159)
3 PLN03089 hypothetical protein; 100.0 9.3E-39 2E-43 320.8 18.1 160 197-375 24-191 (373)
4 PF04862 DUF642: Protein of un 100.0 1.2E-36 2.6E-41 274.9 18.9 151 201-369 1-159 (159)
5 PF02018 CBM_4_9: Carbohydrate 98.7 4.6E-07 1E-11 76.3 14.8 114 200-343 1-122 (131)
6 PF02018 CBM_4_9: Carbohydrate 98.6 3.3E-06 7.1E-11 71.1 15.8 111 33-171 1-126 (131)
7 cd06263 MAM Meprin, A5 protein 92.0 4.3 9.2E-05 35.6 12.7 80 283-369 71-153 (157)
8 PF15425 DUF4627: Domain of un 91.1 13 0.00028 35.1 15.1 81 199-293 5-97 (212)
9 smart00137 MAM Domain in mepri 84.0 14 0.00031 32.9 10.7 80 283-369 75-157 (161)
10 PF00629 MAM: MAM domain; Int 83.0 15 0.00032 31.3 10.0 81 282-369 71-154 (160)
11 cd06263 MAM Meprin, A5 protein 82.4 9.2 0.0002 33.4 8.7 76 112-191 72-154 (157)
12 PF00629 MAM: MAM domain; Int 79.4 11 0.00024 32.1 8.0 78 111-191 72-155 (160)
13 PF03422 CBM_6: Carbohydrate b 70.3 63 0.0014 27.0 12.5 98 89-190 21-124 (125)
14 smart00137 MAM Domain in mepri 66.8 72 0.0016 28.3 10.3 78 111-191 75-158 (161)
15 PF08308 PEGA: PEGA domain; I 61.5 43 0.00093 25.6 6.8 37 256-292 32-68 (71)
16 PF03422 CBM_6: Carbohydrate b 54.8 1.2E+02 0.0027 25.2 12.7 99 259-369 21-124 (125)
17 PF05547 Peptidase_M6: Immune 51.5 95 0.002 34.7 9.8 101 88-191 339-460 (645)
18 PF05547 Peptidase_M6: Immune 47.9 1.2E+02 0.0025 34.0 9.8 104 258-369 339-459 (645)
19 PF15425 DUF4627: Domain of un 47.1 1.3E+02 0.0028 28.7 8.5 90 31-134 4-109 (212)
20 cd08895 SRPBCC_CalC_Aha1-like_ 39.0 2.5E+02 0.0054 24.1 10.0 70 276-345 40-117 (146)
21 PF14900 DUF4493: Domain of un 38.7 1.3E+02 0.0029 28.5 7.6 75 62-136 127-221 (235)
22 PF08308 PEGA: PEGA domain; I 38.6 1.4E+02 0.003 22.7 6.4 33 86-118 32-66 (71)
23 PF14344 DUF4397: Domain of un 35.9 53 0.0012 27.6 4.0 36 83-118 37-80 (122)
24 PF14900 DUF4493: Domain of un 26.9 2.7E+02 0.0058 26.5 7.5 15 278-292 191-205 (235)
25 PRK15252 putative fimbrial-lik 23.8 3.5E+02 0.0076 28.1 7.9 93 31-137 28-128 (344)
26 PF14344 DUF4397: Domain of un 23.8 1E+02 0.0022 25.9 3.6 38 253-290 37-80 (122)
27 PF04300 FBA: F-box associated 22.6 6.3E+02 0.014 23.6 15.3 46 322-371 135-183 (184)
28 PF07675 Cleaved_Adhesin: Clea 22.6 2.4E+02 0.0052 25.5 6.1 76 109-189 71-167 (167)
29 PF07589 VPEP: PEP-CTERM motif 22.4 11 0.00023 24.2 -2.0 6 370-375 2-7 (25)
30 PF08194 DIM: DIM protein; In 22.3 56 0.0012 23.0 1.4 14 27-40 18-31 (36)
No 1
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-112 Score=850.00 Aligned_cols=363 Identities=55% Similarity=0.962 Sum_probs=346.4
Q ss_pred chhHHHHHHHHHhh--cccccccCCccCCCCCCCCCCCCCCcceecCCCCCCCcEEeeeEEEEeCCcccCceeEecCCCC
Q 015986 13 RWVSLFMFVVAHLA--SSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVSSGQKQGGMILIVPQGS 90 (397)
Q Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~nLl~NG~FE~gp~~~~~n~t~~~~~s~ipGW~i~g~Veyi~sg~~~~~~~~~vp~G~ 90 (397)
+.++|+|+|+++++ ++++.++|||+|||||++|.+.++|+++.++.++||||+++|.||||+++||||||+|+||+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~G~ 84 (373)
T PLN03089 5 HSLLLLLLLLLCAAAASAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPEGA 84 (373)
T ss_pred hhHHHHHHHHHHhcccccccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcEEEEeCCCccCceeEECCCCc
Confidence 33444444455555 4455889999999999999877789999999999999999999999999999999999999999
Q ss_pred eEEEcCCCceeeEEEEccCCCeEEEEEEeccCcCCCcceEEEEcCCcceEEEEeeeeccCeeeEEEEEEEecceEEEEEE
Q 015986 91 HAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFK 170 (397)
Q Consensus 91 ~aVeLG~~~~I~Q~~~t~~G~~Y~LTFsAa~~ca~~~~l~Vsv~~~~~~~~~~t~y~s~GW~~~s~~F~A~~~~t~l~F~ 170 (397)
||||||+|++|+|+|+|++|++|+|||+++|+|+|.|.|+|+++++++++++++.|+++||++|+|+|+|++++++|+||
T Consensus 85 ~Av~LG~e~sI~Q~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~ 164 (373)
T PLN03089 85 HAVRLGNEASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFH 164 (373)
T ss_pred hhhhcCCCceEEEEEEccCCCEEEEEEEecCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCcceeeEEEEeecCCCCCccccccCCCcccCCcccccCCceeeecccccCCCCCCCCcEEeecceEEEEc
Q 015986 171 NPGMEDDPTCGPIIDDIAIKKLFAPDKPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYID 250 (397)
Q Consensus 171 s~g~~~~~~cGPvIDdV~V~~l~~p~~~~~NLl~NGsFE~gP~~~p~~~~g~~~~~~~~~~~s~IpGWtv~s~~~V~yI~ 250 (397)
+++.++|++|||+||||+|+++.+|.++++|||+||+||+||+++|+++||++|||++++++++||||||+++|+|||||
T Consensus 165 ~~~~~~D~~CGPviD~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yid 244 (373)
T PLN03089 165 NPGVEEDPACGPLIDAVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYID 244 (373)
T ss_pred CcccCCCCcccceeeeEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CCCccCCCCCeEEEecCCCcceeEEEEEcccCCeEEEEEEeccCCCCCCCCeeEEEEecCcceEEEEEecCCCCeEEEEE
Q 015986 251 SYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVHYTEDANSTFHDANV 330 (397)
Q Consensus 251 s~~~~vp~G~~aVeL~~g~~~~I~Q~~~T~~G~~Y~LtF~lg~A~n~c~g~~~v~~~~g~~~~~~~~~s~g~~gw~~~s~ 330 (397)
++||+||+|+|||||++|+|++|+|+++|++|+.|+|+|+||+|+|.|+++|.|++++|+.+++++|+++|+++|+++++
T Consensus 245 s~h~~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~g~gg~~~~s~ 324 (373)
T PLN03089 245 SAHFSVPEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQGKGGFKRASL 324 (373)
T ss_pred cCcccCCCCceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecCCCcceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccceeEEEEEEcccccccCCCCCcCcceeeeEEEE-ecCCCc
Q 015986 331 NFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVW-FSGSSR 375 (397)
Q Consensus 331 ~F~A~s~~T~L~F~S~~~~~~~d~~~~~cGpvIDdVsV~-v~~p~~ 375 (397)
.|+|++++|||+|+|.+||++.|+.+++|||+||||+|+ ++.|++
T Consensus 325 ~F~A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~~~~~ 370 (373)
T PLN03089 325 RFKAVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVRAPRA 370 (373)
T ss_pred EEEeccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEccCCcc
Confidence 999999999999999999999998899999999999999 988765
No 2
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=1.3e-44 Score=326.79 Aligned_cols=157 Identities=46% Similarity=0.852 Sum_probs=145.3
Q ss_pred CCccCCCCCCCCCCCCCCcce-ecCCCCCCCcEEeeeEEEEeCCcccCceeEecCCCCeEEEcCCCceeeEEEEccCCCe
Q 015986 34 GLVANGDFETSPSHGFPSESI-ADGPTEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGST 112 (397)
Q Consensus 34 nLl~NG~FE~gp~~~~~n~t~-~~~~s~ipGW~i~g~Veyi~sg~~~~~~~~~vp~G~~aVeLG~~~~I~Q~~~t~~G~~ 112 (397)
|||+||+||++|...+++++. .++.++||||+++|.||||+++|++|+|++.+|+|.||||||++++|+|+|+|++|++
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~~~~~~s~ipGWtv~g~Ve~i~~~~~~g~~~~~~p~G~~aveLg~~~~I~Q~~~t~~G~~ 80 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTSLSDGSSSIPGWTVSGSVEYIDSGHFQGGMYFAVPEGKQAVELGNEGSISQTFTTVPGST 80 (159)
T ss_pred CCccCCCCCCCCccCCCCcceEccCCCcCCCcEEcCEEEEEecCCccCceeeeCCCCceEEEcCCCceEEEEEEccCCCE
Confidence 899999999999766667664 4588999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCcCCCcceEEEEcCC-cceEEEEeeeeccCeeeEEEEEEEecceEEEEEECCCCCCCCCcCcceeeEEEE
Q 015986 113 YSVTFSAARTCAQLESLNVSVPPA-SQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPIIDDIAIK 190 (397)
Q Consensus 113 Y~LTFsAa~~ca~~~~l~Vsv~~~-~~~~~~~t~y~s~GW~~~s~~F~A~~~~t~l~F~s~g~~~~~~cGPvIDdV~V~ 190 (397)
|+|||+++|+|++.+.|+|+|.++ ...+++++.+++.+|++|+|+|+|.+++++|.|++++.++|++|||+||||+||
T Consensus 81 Y~LtF~~~~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~~~~d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 81 YTLTFSLARNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPGMESDSACGPVIDNVSVK 159 (159)
T ss_pred EEEEEEecCCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCCccCCCCceeEEEEEEeC
Confidence 999999999999999999999985 667777878888889999999999999999999999888889999999999996
No 3
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=9.3e-39 Score=320.80 Aligned_cols=160 Identities=27% Similarity=0.434 Sum_probs=140.8
Q ss_pred CCccccccCCCcccCCcccccCCceeeecccccCCCCCCCCcEEeecceEEEEcCCC------ccCCCCCeEEEecCCCc
Q 015986 197 KPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYIDSYH------YSVPQGKRAIELLSGKE 270 (397)
Q Consensus 197 ~~~~NLl~NGsFE~gP~~~p~~~~g~~~~~~~~~~~s~IpGWtv~s~~~V~yI~s~~------~~vp~G~~aVeL~~g~~ 270 (397)
+.++|||+||+||++|+.++- ++. +.++.++||||++++ .||||+++| |.||+|+||||| |+|
T Consensus 24 ~~~~nLL~NG~FE~gP~~~~~--n~t-----~~~g~s~LPgW~i~g--~VeyI~s~~~~~~m~~~vP~G~~Av~L--G~e 92 (373)
T PLN03089 24 PVTDGLLPNGDFETPPKKSQM--NGT-----VVIGKNAIPGWEISG--FVEYISSGQKQGGMLLVVPEGAHAVRL--GNE 92 (373)
T ss_pred cccCCeecCCCccCCCCcCCC--Ccc-----cccCCCCCCCCEecC--cEEEEeCCCccCceeEECCCCchhhhc--CCC
Confidence 457899999999999986522 222 346899999999875 999999998 899999999999 999
Q ss_pred ceeEEEEEcccCCeEEEEEEeccCCCCCCCCeeEEEEecCcceEEEEEe-cCCCCeEEEEEEEEEccceeEEEEEEcccc
Q 015986 271 GIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVHYTE-DANSTFHDANVNFTAKADRTRIAFYSVYYN 349 (397)
Q Consensus 271 ~~I~Q~~~T~~G~~Y~LtF~lg~A~n~c~g~~~v~~~~g~~~~~~~~~s-~g~~gw~~~s~~F~A~s~~T~L~F~S~~~~ 349 (397)
++|+|+|+|++|+.|+|||+++ |+|++++.|.++++..+.+++|++ +++++|++|+|.|+|++++|+|+|++ ++
T Consensus 93 ~sI~Q~i~t~~G~~Y~LTFs~a---r~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~~--~~ 167 (373)
T PLN03089 93 ASISQTLTVTKGSYYSLTFSAA---RTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHN--PG 167 (373)
T ss_pred ceEEEEEEccCCCEEEEEEEec---CCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEEC--cc
Confidence 9999999999999999999974 899999999999999999999887 68899999999999999999999985 55
Q ss_pred cccCCCCCcCcceeeeEEEE-ecCCCc
Q 015986 350 TRTDDMSSLCGPVVDDVRVW-FSGSSR 375 (397)
Q Consensus 350 ~~~d~~~~~cGpvIDdVsV~-v~~p~~ 375 (397)
++. +++|||+||||+|+ +++|+.
T Consensus 168 ~~~---D~~CGPviD~VaIk~l~~P~p 191 (373)
T PLN03089 168 VEE---DPACGPLIDAVAIKTLFPPRP 191 (373)
T ss_pred cCC---CCcccceeeeEEEeeccCCCc
Confidence 543 35799999999999 877744
No 4
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=1.2e-36 Score=274.87 Aligned_cols=151 Identities=38% Similarity=0.654 Sum_probs=119.3
Q ss_pred ccccCCCcccCCcccccCCceeeecccccCCCCCCCCcEEeecceEEEEcCCCcc------CCCCCeEEEecCCCcceeE
Q 015986 201 NAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYIDSYHYS------VPQGKRAIELLSGKEGIIS 274 (397)
Q Consensus 201 NLl~NGsFE~gP~~~p~~~~g~~~~~~~~~~~s~IpGWtv~s~~~V~yI~s~~~~------vp~G~~aVeL~~g~~~~I~ 274 (397)
|||+||+||++|+..+.+... +.++.++||||++++ .||||+++|+. +|+|+|+||| +++++|+
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~------~~~~~s~ipGWtv~g--~Ve~i~~~~~~g~~~~~~p~G~~aveL--g~~~~I~ 70 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTS------LSDGSSSIPGWTVSG--SVEYIDSGHFQGGMYFAVPEGKQAVEL--GNEGSIS 70 (159)
T ss_pred CCccCCCCCCCCccCCCCcce------EccCCCcCCCcEEcC--EEEEEecCCccCceeeeCCCCceEEEc--CCCceEE
Confidence 899999999999854433332 345889999999986 59999999987 9999999999 8899999
Q ss_pred EEEEcccCCeEEEEEEeccCCCCCCCCeeEEEEecC-cceEEEEEecCC-CCeEEEEEEEEEccceeEEEEEEccccccc
Q 015986 275 QMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGD-QAQIVHYTEDAN-STFHDANVNFTAKADRTRIAFYSVYYNTRT 352 (397)
Q Consensus 275 Q~~~T~~G~~Y~LtF~lg~A~n~c~g~~~v~~~~g~-~~~~~~~~s~g~-~gw~~~s~~F~A~s~~T~L~F~S~~~~~~~ 352 (397)
|+|+|++|++|+|+|+++ +.|++.+.+.+.++. ....+++.+..+ .+|++++|.|+|.+++++|.|++ ++++
T Consensus 71 Q~~~t~~G~~Y~LtF~~~---~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~--~~~~- 144 (159)
T PF04862_consen 71 QTFTTVPGSTYTLTFSLA---RNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHN--PGME- 144 (159)
T ss_pred EEEEccCCCEEEEEEEec---CCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEEC--CCcc-
Confidence 999999999999999975 888776554444444 366677665544 56999999999966666666644 4333
Q ss_pred CCCCCcCcceeeeEEEE
Q 015986 353 DDMSSLCGPVVDDVRVW 369 (397)
Q Consensus 353 d~~~~~cGpvIDdVsV~ 369 (397)
+ +.+|||+||||+|+
T Consensus 145 ~--d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 145 S--DSACGPVIDNVSVK 159 (159)
T ss_pred C--CCCceeEEEEEEeC
Confidence 2 34799999999986
No 5
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.74 E-value=4.6e-07 Score=76.29 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=70.1
Q ss_pred cccccCCCcccCCcccccCCceeeecccccCCCCCCCCcEEeecc-eEEEEcCCCccCCCCCeEEEecCCCc--ceeE--
Q 015986 200 DNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNR-AVRYIDSYHYSVPQGKRAIELLSGKE--GIIS-- 274 (397)
Q Consensus 200 ~NLl~NGsFE~gP~~~p~~~~g~~~~~~~~~~~s~IpGWtv~s~~-~V~yI~s~~~~vp~G~~aVeL~~g~~--~~I~-- 274 (397)
.|||+||+||++- +.+|...+.. ....++.. +|.+++.+..... ..+.
T Consensus 1 ~nli~N~~Fe~~~----------------------~~~W~~~~~~~~~~~~~~~-----~g~~~l~v~~~~~~~~~~~~~ 53 (131)
T PF02018_consen 1 GNLIKNGGFEDGG----------------------LSGWSFWGNSGASASVDNA-----SGNYSLKVSNRSATWDGQSQQ 53 (131)
T ss_dssp GBSSSSTTSTTTS----------------------TTTEEEESSTTEEEEEEEC-----SSSEEEEEECCSSGCGEEEEE
T ss_pred CCEEECCCccCCC----------------------CCCCEEccCCCEEEEEEcC-----CCeEEEEEECCCCCcccccee
Confidence 4999999999832 2577776532 23334432 7999999866533 2333
Q ss_pred EEEEcccCCeEEEEEEeccCCCCCCCCeeEEEEecCc-c-eEEEE-EecCCCCeEEEEEEEEEccceeEEEE
Q 015986 275 QMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQ-A-QIVHY-TEDANSTFHDANVNFTAKADRTRIAF 343 (397)
Q Consensus 275 Q~~~T~~G~~Y~LtF~lg~A~n~c~g~~~v~~~~g~~-~-~~~~~-~s~g~~gw~~~s~~F~A~s~~T~L~F 343 (397)
+.+.+.+|++|+|+|.+-.... ....+.+..... . ..+.. ....+..|++++.+|++..+..++.|
T Consensus 54 ~~~~l~~G~~Y~~s~~vk~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l 122 (131)
T PF02018_consen 54 QTISLKPGKTYTVSFWVKADSG---GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRL 122 (131)
T ss_dssp EEEEE-TTSEEEEEEEEEESSS---EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEE
T ss_pred cceEecCCCEEEEEEEEEeCCC---CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEE
Confidence 3468999999999999843222 333344433333 2 22222 23335789999999999965554444
No 6
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.59 E-value=3.3e-06 Score=71.09 Aligned_cols=111 Identities=25% Similarity=0.427 Sum_probs=68.7
Q ss_pred cCCccCCCCCCCCCCCCCCcceecCCCCCCCcEEeee---EEEEeCCcccCceeEecCCCCeEEEc-CCC---ceeeE--
Q 015986 33 DGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGT---VELVSSGQKQGGMILIVPQGSHAVRL-GND---AEISQ-- 103 (397)
Q Consensus 33 ~nLl~NG~FE~gp~~~~~n~t~~~~~s~ipGW~i~g~---Veyi~sg~~~~~~~~~vp~G~~aVeL-G~~---~~I~Q-- 103 (397)
.|||+||+||++. +.+|...+. ...+ ..+.|.+++++ +.. ..+.|
T Consensus 1 ~nli~N~~Fe~~~---------------~~~W~~~~~~~~~~~~-----------~~~~g~~~l~v~~~~~~~~~~~~~~ 54 (131)
T PF02018_consen 1 GNLIKNGGFEDGG---------------LSGWSFWGNSGASASV-----------DNASGNYSLKVSNRSATWDGQSQQQ 54 (131)
T ss_dssp GBSSSSTTSTTTS---------------TTTEEEESSTTEEEEE-----------EECSSSEEEEEECCSSGCGEEEEEE
T ss_pred CCEEECCCccCCC---------------CCCCEEccCCCEEEEE-----------EcCCCeEEEEEECCCCCccccceec
Confidence 4899999999832 447888542 2222 22278999988 221 23333
Q ss_pred EEEccCCCeEEEEEEeccCcCCCcceEEEEcCCcc--eEEE--EeeeeccCeeeEEEEEEEec--ceEEEEEEC
Q 015986 104 EVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQ--TIDL--QTLYNVQGWDPYAWAFEAED--DNVKLLFKN 171 (397)
Q Consensus 104 ~~~t~~G~~Y~LTFsAa~~ca~~~~l~Vsv~~~~~--~~~~--~t~y~s~GW~~~s~~F~A~~--~~t~l~F~s 171 (397)
.+.+.+|++|+|+|.+..... ..+++.+..... ...+ .....+..|+.++..|++.. +.++|.|+.
T Consensus 55 ~~~l~~G~~Y~~s~~vk~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~ 126 (131)
T PF02018_consen 55 TISLKPGKTYTVSFWVKADSG--GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEI 126 (131)
T ss_dssp EEEE-TTSEEEEEEEEEESSS--EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEE
T ss_pred ceEecCCCEEEEEEEEEeCCC--CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEe
Confidence 468999999999999533322 345554443322 1111 13334678999999999994 566777764
No 7
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=92.02 E-value=4.3 Score=35.57 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=53.2
Q ss_pred CeEEEEEEeccCCCCCCCCeeEEEEecCc-ceEEEEEecCC--CCeEEEEEEEEEccceeEEEEEEcccccccCCCCCcC
Q 015986 283 KDYSLTFSLGHAGDKCKQPLAVMAFAGDQ-AQIVHYTEDAN--STFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLC 359 (397)
Q Consensus 283 ~~Y~LtF~lg~A~n~c~g~~~v~~~~g~~-~~~~~~~s~g~--~gw~~~s~~F~A~s~~T~L~F~S~~~~~~~d~~~~~c 359 (397)
...-|+|.+--.+.. .+.+.|.+..... .....++..+. ..|+..++.+.+....-+|+|... ... +...
T Consensus 71 ~~~Cl~F~y~~~g~~-~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~----~~~--~~~g 143 (157)
T cd06263 71 SSHCLSFWYHMYGSG-VGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGV----RGS--GSRG 143 (157)
T ss_pred CCeEEEEEEEecCCC-CCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEE----ECC--Cccc
Confidence 345599998644433 4555665554443 23444444443 579999999999989999999873 111 2335
Q ss_pred cceeeeEEEE
Q 015986 360 GPVVDDVRVW 369 (397)
Q Consensus 360 GpvIDdVsV~ 369 (397)
.-.||||+|.
T Consensus 144 ~IAIDdI~l~ 153 (157)
T cd06263 144 DIALDDISLS 153 (157)
T ss_pred cEEEeEEEEe
Confidence 6889999997
No 8
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=91.14 E-value=13 Score=35.13 Aligned_cols=81 Identities=19% Similarity=0.386 Sum_probs=34.1
Q ss_pred ccccccCCCcccCCcccccCCceeeecccccCCCCCCCCcEEeec-----ceEEEEcCCCccCCCCCeEEEecCCC----
Q 015986 199 KDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESN-----RAVRYIDSYHYSVPQGKRAIELLSGK---- 269 (397)
Q Consensus 199 ~~NLl~NGsFE~gP~~~p~~~~g~~~~~~~~~~~s~IpGWtv~s~-----~~V~yI~s~~~~vp~G~~aVeL~~g~---- 269 (397)
+.|||+||+|.+ |..+-... .....+.-|-+... ..+-++.++. ..=..++++.+-.
T Consensus 5 AQnLIkN~~F~t-~Lt~e~~~----------as~~T~~~Wfavnde~~G~Tt~a~~~tnD---~k~~na~~is~~~~~ts 70 (212)
T PF15425_consen 5 AQNLIKNGDFDT-PLTNENTT----------ASNTTFGKWFAVNDEWDGATTIAWINTND---QKTGNAWGISSWDKQTS 70 (212)
T ss_dssp -----SSTT--S-----B-SS----------GGGS-TTSEEEEE-S-TTS-EEEEEE-S----TTS-EEEEETT-SS---
T ss_pred hhhhhhcCccCc-chhccccC----------cCcccccceEEEecccCCceEeeeeccCc---ccccceEEEeecccCcH
Confidence 579999999996 64222111 12344567866531 1233333321 1122467772211
Q ss_pred --cceeEEEE-EcccCCeEEEEEEecc
Q 015986 270 --EGIISQMV-ETMANKDYSLTFSLGH 293 (397)
Q Consensus 270 --~~~I~Q~~-~T~~G~~Y~LtF~lg~ 293 (397)
-+-+.|.+ .-..-.-|.|+|+...
T Consensus 71 WykafLaQr~~~gae~~mYtLsF~AkA 97 (212)
T PF15425_consen 71 WYKAFLAQRYTNGAEKGMYTLSFDAKA 97 (212)
T ss_dssp TTTEEEEEEE-S---SSEEEEEEEEEE
T ss_pred HHHHHHHHHHhcccccceEEEEEEeec
Confidence 15688999 3444567999999653
No 9
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=84.03 E-value=14 Score=32.90 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=51.8
Q ss_pred CeEEEEEEeccCCCCCCCCeeEEEEe-cCcceEEEEEecCC--CCeEEEEEEEEEccceeEEEEEEcccccccCCCCCcC
Q 015986 283 KDYSLTFSLGHAGDKCKQPLAVMAFA-GDQAQIVHYTEDAN--STFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLC 359 (397)
Q Consensus 283 ~~Y~LtF~lg~A~n~c~g~~~v~~~~-g~~~~~~~~~s~g~--~gw~~~s~~F~A~s~~T~L~F~S~~~~~~~d~~~~~c 359 (397)
..+-|+|.|--.+ ...+.+.|.+.. +....+..++..|. ..|+..++.+......-+|+|... ... +...
T Consensus 75 ~~~cl~F~Y~m~G-~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~----~g~--~~~g 147 (161)
T smart00137 75 STHCLTFWYYMYG-SGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGT----RGK--GHSG 147 (161)
T ss_pred CCeEEEEEEEecC-CCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEE----EcC--Cccc
Confidence 3567999985432 223445554442 22233445565554 459999999998888899999762 212 2335
Q ss_pred cceeeeEEEE
Q 015986 360 GPVVDDVRVW 369 (397)
Q Consensus 360 GpvIDdVsV~ 369 (397)
--.||||+|.
T Consensus 148 ~IAiDDI~i~ 157 (161)
T smart00137 148 YIALDDILLS 157 (161)
T ss_pred eEEEeEEEee
Confidence 6799999997
No 10
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=83.02 E-value=15 Score=31.34 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCeEEEEEEeccCCCCCCCCeeEEEEecC-cceE--EEEEecCCCCeEEEEEEEEEccceeEEEEEEcccccccCCCCCc
Q 015986 282 NKDYSLTFSLGHAGDKCKQPLAVMAFAGD-QAQI--VHYTEDANSTFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSL 358 (397)
Q Consensus 282 G~~Y~LtF~lg~A~n~c~g~~~v~~~~g~-~~~~--~~~~s~g~~gw~~~s~~F~A~s~~T~L~F~S~~~~~~~d~~~~~ 358 (397)
...+-|+|.+--.+.. .+...|.+.... ...+ ..........|++..+.+.+....-+|+|... ... +..
T Consensus 71 ~~~~cl~F~y~~~g~~-~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~----~~~--~~~ 143 (160)
T PF00629_consen 71 SGNSCLSFWYYMYGSS-VGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAI----RGS--SYR 143 (160)
T ss_dssp SS--EEEEEEEEE-SS-SEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEE----E----SS-
T ss_pred cccceeEEEEeecccc-ceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEE----EcC--CCc
Confidence 3355599999643322 234444444441 1111 11122223679999999999999999999762 211 112
Q ss_pred CcceeeeEEEE
Q 015986 359 CGPVVDDVRVW 369 (397)
Q Consensus 359 cGpvIDdVsV~ 369 (397)
-.-.||||+|.
T Consensus 144 ~~iaiDdi~~~ 154 (160)
T PF00629_consen 144 GDIAIDDISLS 154 (160)
T ss_dssp -EEEEEEEEEE
T ss_pred eEEEEEEEEEe
Confidence 45779999997
No 11
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=82.44 E-value=9.2 Score=33.42 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=49.1
Q ss_pred eEEEEEE---eccCcCCCcceEEEEcCCcc--eEEEEeeee--ccCeeeEEEEEEEecceEEEEEECCCCCCCCCcCcce
Q 015986 112 TYSVTFS---AARTCAQLESLNVSVPPASQ--TIDLQTLYN--VQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPII 184 (397)
Q Consensus 112 ~Y~LTFs---Aa~~ca~~~~l~Vsv~~~~~--~~~~~t~y~--s~GW~~~s~~F~A~~~~t~l~F~s~g~~~~~~cGPvI 184 (397)
..-|+|. .++. ...|+|.+-...+ ...+-.... ...|....+.+.+.....+|+|+.... ......-.|
T Consensus 72 ~~Cl~F~y~~~g~~---~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~-~~~~g~IAI 147 (157)
T cd06263 72 SHCLSFWYHMYGSG---VGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRG-SGSRGDIAL 147 (157)
T ss_pred CeEEEEEEEecCCC---CCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEEC-CCccccEEE
Confidence 4459999 2332 3568888765543 222222222 467999999999988899999998521 112233359
Q ss_pred eeEEEEe
Q 015986 185 DDIAIKK 191 (397)
Q Consensus 185 DdV~V~~ 191 (397)
|||+|..
T Consensus 148 DdI~l~~ 154 (157)
T cd06263 148 DDISLSP 154 (157)
T ss_pred eEEEEec
Confidence 9999974
No 12
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=79.44 E-value=11 Score=32.13 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=40.0
Q ss_pred CeEEEEEE-eccCcCCCcceEEEEcCCcc--eEEEE--eeeeccCeeeEEEEEEEecceEEEEEECCCCCCCCCcCc-ce
Q 015986 111 STYSVTFS-AARTCAQLESLNVSVPPASQ--TIDLQ--TLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGP-II 184 (397)
Q Consensus 111 ~~Y~LTFs-Aa~~ca~~~~l~Vsv~~~~~--~~~~~--t~y~s~GW~~~s~~F~A~~~~t~l~F~s~g~~~~~~cGP-vI 184 (397)
..+-|+|. .-.... ...|+|.+..... ...+- .......|....+.+.+.....+|+|....-. ... |- .|
T Consensus 72 ~~~cl~F~y~~~g~~-~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~~~-~~~-~~iai 148 (160)
T PF00629_consen 72 GNSCLSFWYYMYGSS-VGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIRGS-SYR-GDIAI 148 (160)
T ss_dssp S--EEEEEEEEE-SS-SEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE---SS---EEEE
T ss_pred ccceeEEEEeecccc-ceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEEEcC-CCc-eEEEE
Confidence 35559999 222222 2457777765411 11111 11225679999999999999999999974111 112 33 49
Q ss_pred eeEEEEe
Q 015986 185 DDIAIKK 191 (397)
Q Consensus 185 DdV~V~~ 191 (397)
|||.|..
T Consensus 149 Ddi~~~~ 155 (160)
T PF00629_consen 149 DDISLSP 155 (160)
T ss_dssp EEEEEES
T ss_pred EEEEEeC
Confidence 9999983
No 13
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=70.28 E-value=63 Score=26.98 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=51.9
Q ss_pred CCeEEEcC--CCceeeEEEEccCCCeEEEEEEeccCcCCCcceEEEEcCCcceEEEEeee-eccCe---eeEEEEEEEec
Q 015986 89 GSHAVRLG--NDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQTIDLQTLY-NVQGW---DPYAWAFEAED 162 (397)
Q Consensus 89 G~~aVeLG--~~~~I~Q~~~t~~G~~Y~LTFsAa~~ca~~~~l~Vsv~~~~~~~~~~t~y-~s~GW---~~~s~~F~A~~ 162 (397)
|.+.+-.. ++......|+...+..|.|++..++.-.. ..+.+.+....+...-.... .+.+| ...+.......
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~-~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~ 99 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG-GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPA 99 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS-EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEES
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC-cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCC
Confidence 56666662 22333445888899999999884443222 57888887722222111111 24444 44544554444
Q ss_pred ceEEEEEECCCCCCCCCcCcceeeEEEE
Q 015986 163 DNVKLLFKNPGMEDDPTCGPIIDDIAIK 190 (397)
Q Consensus 163 ~~t~l~F~s~g~~~~~~cGPvIDdV~V~ 190 (397)
..=+|.|...+-. .|.+=||.+.+.
T Consensus 100 G~h~i~l~~~~~~---~~~~niD~~~f~ 124 (125)
T PF03422_consen 100 GKHTIYLVFNGGD---GWAFNIDYFQFT 124 (125)
T ss_dssp EEEEEEEEESSSS---SB-EEEEEEEEE
T ss_pred CeeEEEEEEECCC---CceEEeEEEEEE
Confidence 3334444443111 155669988764
No 14
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=66.79 E-value=72 Score=28.33 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=47.0
Q ss_pred CeEEEEEE--eccCcCCCcceEEEEcCCcce--EEEEeeee--ccCeeeEEEEEEEecceEEEEEECCCCCCCCCcCcce
Q 015986 111 STYSVTFS--AARTCAQLESLNVSVPPASQT--IDLQTLYN--VQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPII 184 (397)
Q Consensus 111 ~~Y~LTFs--Aa~~ca~~~~l~Vsv~~~~~~--~~~~t~y~--s~GW~~~s~~F~A~~~~t~l~F~s~g~~~~~~cGPvI 184 (397)
..+-|+|. +.... ...|+|++-...+. -.+-...+ ...|....+.+.......+|.|+..-- .....--.|
T Consensus 75 ~~~cl~F~Y~m~G~~--~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~g-~~~~g~IAi 151 (161)
T smart00137 75 STHCLTFWYYMYGSG--SGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTRG-KGHSGYIAL 151 (161)
T ss_pred CCeEEEEEEEecCCC--CCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEEc-CCccceEEE
Confidence 35679999 32222 24577877531111 11212222 345999999999888889999997411 112333469
Q ss_pred eeEEEEe
Q 015986 185 DDIAIKK 191 (397)
Q Consensus 185 DdV~V~~ 191 (397)
|||+|..
T Consensus 152 DDI~i~~ 158 (161)
T smart00137 152 DDILLSN 158 (161)
T ss_pred eEEEeec
Confidence 9999874
No 15
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=61.46 E-value=43 Score=25.57 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=31.1
Q ss_pred CCCCCeEEEecCCCcceeEEEEEcccCCeEEEEEEec
Q 015986 256 VPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLG 292 (397)
Q Consensus 256 vp~G~~aVeL~~g~~~~I~Q~~~T~~G~~Y~LtF~lg 292 (397)
+|.|.|.|++-....-...+++...+|+...|.+.|-
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 7899999999655556778899999999999999874
No 16
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=54.80 E-value=1.2e+02 Score=25.15 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=56.7
Q ss_pred CCeEEEecCCCcceeEEEEEcccCCeEEEEEEeccCCCCCCCCeeEEEEecC----cceEEEEEecCC-CCeEEEEEEEE
Q 015986 259 GKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGD----QAQIVHYTEDAN-STFHDANVNFT 333 (397)
Q Consensus 259 G~~aVeL~~g~~~~I~Q~~~T~~G~~Y~LtF~lg~A~n~c~g~~~v~~~~g~----~~~~~~~~s~g~-~gw~~~s~~F~ 333 (397)
|.+.+-.....+......+....+..|.|++.++..... ..+++...+ ..-++.+..++. ..|+..+....
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~----~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~ 96 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG----GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVK 96 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS----EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEE
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC----cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEe
Confidence 556666543333444445888899999999998653333 344444443 223444444332 24767777776
Q ss_pred EccceeEEEEEEcccccccCCCCCcCcceeeeEEEE
Q 015986 334 AKADRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVW 369 (397)
Q Consensus 334 A~s~~T~L~F~S~~~~~~~d~~~~~cGpvIDdVsV~ 369 (397)
.....=+|.|.. .. + +. +.+=||-+.++
T Consensus 97 l~~G~h~i~l~~----~~-~--~~-~~~niD~~~f~ 124 (125)
T PF03422_consen 97 LPAGKHTIYLVF----NG-G--DG-WAFNIDYFQFT 124 (125)
T ss_dssp EESEEEEEEEEE----SS-S--SS-B-EEEEEEEEE
T ss_pred eCCCeeEEEEEE----EC-C--CC-ceEEeEEEEEE
Confidence 666555666654 11 1 22 67889988764
No 17
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=51.48 E-value=95 Score=34.73 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=61.5
Q ss_pred CCCeEEEc--CC--CceeeEEEEccCCCeEEEEEEeccCcCC---CcceE-EEEcCCcceEEEEee--------ee-ccC
Q 015986 88 QGSHAVRL--GN--DAEISQEVKVEKGSTYSVTFSAARTCAQ---LESLN-VSVPPASQTIDLQTL--------YN-VQG 150 (397)
Q Consensus 88 ~G~~aVeL--G~--~~~I~Q~~~t~~G~~Y~LTFsAa~~ca~---~~~l~-Vsv~~~~~~~~~~t~--------y~-s~G 150 (397)
+|.++.=- |+ ...+.+.|+++.++.=+|+|.+--.-.. -..+. |+..+.....++... .. +.+
T Consensus 339 ~G~~~w~Sg~Gd~l~~tLt~~vdLp~~s~AtLsfk~wydIE~dyDy~~VevvStdGg~Twt~~~g~~~~~~~~~~~~sg~ 418 (645)
T PF05547_consen 339 SGSYAWYSGSGDDLNNTLTRSVDLPAASSATLSFKAWYDIEADYDYAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGSSGG 418 (645)
T ss_pred CCceEEEECCCcchhhheeeeeccCCCCCeEEEeehheecccCCceEEEEEEEcCCCceeEecCccccccCCCCCCCccc
Confidence 56665544 22 2567778887777767899984222111 13344 455544322222111 11 357
Q ss_pred eeeEEEEEEEec-ceEEEEEECCCCCCCC---CcCcceeeEEEEe
Q 015986 151 WDPYAWAFEAED-DNVKLLFKNPGMEDDP---TCGPIIDDIAIKK 191 (397)
Q Consensus 151 W~~~s~~F~A~~-~~t~l~F~s~g~~~~~---~cGPvIDdV~V~~ 191 (397)
|...+++..|-+ .+++|.|.= .+|+ .-|-+||||+|..
T Consensus 419 Wv~~~~DLSayAGqtV~LrFrY---~TD~~v~~~G~~vDdi~v~~ 460 (645)
T PF05547_consen 419 WVDASFDLSAYAGQTVQLRFRY---VTDGGVAGRGFYVDDIRVTA 460 (645)
T ss_pred eeEeEeccccccCCeEEEEEEE---EcCCCccCCcEEEEEEEEEE
Confidence 999999999864 567899983 4554 3578899999974
No 18
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=47.94 E-value=1.2e+02 Score=34.01 Aligned_cols=104 Identities=23% Similarity=0.226 Sum_probs=61.5
Q ss_pred CCCeEEEecCCCc--ceeEEEEEcccCCeEEEEEEeccCCCCCCC---CeeEE-E-EecCcce-EEEEE-------ecC-
Q 015986 258 QGKRAIELLSGKE--GIISQMVETMANKDYSLTFSLGHAGDKCKQ---PLAVM-A-FAGDQAQ-IVHYT-------EDA- 321 (397)
Q Consensus 258 ~G~~aVeL~~g~~--~~I~Q~~~T~~G~~Y~LtF~lg~A~n~c~g---~~~v~-~-~~g~~~~-~~~~~-------s~g- 321 (397)
+|.++.=-..|+. ..+.+.|++..+..=+|+|.. --.-+. -..|+ + ..|..+. ....+ ..+
T Consensus 339 ~G~~~w~Sg~Gd~l~~tLt~~vdLp~~s~AtLsfk~---wydIE~dyDy~~VevvStdGg~Twt~~~g~~~~~~~~~~~~ 415 (645)
T PF05547_consen 339 SGSYAWYSGSGDDLNNTLTRSVDLPAASSATLSFKA---WYDIEADYDYAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGS 415 (645)
T ss_pred CCceEEEECCCcchhhheeeeeccCCCCCeEEEeeh---heecccCCceEEEEEEEcCCCceeEecCccccccCCCCCCC
Confidence 6777665544443 568888887777777888873 222111 23455 2 2233221 11111 111
Q ss_pred CCCeEEEEEEEEEcc-ceeEEEEEEcccccccCCCCCcCcceeeeEEEE
Q 015986 322 NSTFHDANVNFTAKA-DRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVW 369 (397)
Q Consensus 322 ~~gw~~~s~~F~A~s-~~T~L~F~S~~~~~~~d~~~~~cGpvIDdVsV~ 369 (397)
+++|...+++..|-+ .+.+|.|. |. .|..-..-|-+||||+|+
T Consensus 416 sg~Wv~~~~DLSayAGqtV~LrFr---Y~--TD~~v~~~G~~vDdi~v~ 459 (645)
T PF05547_consen 416 SGGWVDASFDLSAYAGQTVQLRFR---YV--TDGGVAGRGFYVDDIRVT 459 (645)
T ss_pred ccceeEeEeccccccCCeEEEEEE---EE--cCCCccCCcEEEEEEEEE
Confidence 257999999999866 45689995 22 243234468999999997
No 19
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=47.10 E-value=1.3e+02 Score=28.72 Aligned_cols=90 Identities=19% Similarity=0.340 Sum_probs=35.7
Q ss_pred cccCCccCCCCCCCCCCCCCCcceecCCCCCCCcEEe-----e--eEEEEeCCcccCceeEecCCCCeEEEc-CC-----
Q 015986 31 AEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLN-----G--TVELVSSGQKQGGMILIVPQGSHAVRL-GN----- 97 (397)
Q Consensus 31 ~~~nLl~NG~FE~gp~~~~~n~t~~~~~s~ipGW~i~-----g--~Veyi~sg~~~~~~~~~vp~G~~aVeL-G~----- 97 (397)
.+.|||+||+|.++-. +-+++ .....+.-|-+. | .+-++.++.++- ..+++. +-
T Consensus 4 ~AQnLIkN~~F~t~Lt--~e~~~--as~~T~~~Wfavnde~~G~Tt~a~~~tnD~k~---------~na~~is~~~~~ts 70 (212)
T PF15425_consen 4 SAQNLIKNGDFDTPLT--NENTT--ASNTTFGKWFAVNDEWDGATTIAWINTNDQKT---------GNAWGISSWDKQTS 70 (212)
T ss_dssp ------SSTT--S------B-SS--GGGS-TTSEEEEE-S-TTS-EEEEEE-S-TTS----------EEEEETT-SS---
T ss_pred chhhhhhcCccCcchh--ccccC--cCcccccceEEEecccCCceEeeeeccCcccc---------cceEEEeecccCcH
Confidence 3579999999996431 11221 112335566552 1 244444443322 125555 21
Q ss_pred --CceeeEEE-EccCCCeEEEEEEeccCcCCCcceEEEEc
Q 015986 98 --DAEISQEV-KVEKGSTYSVTFSAARTCAQLESLNVSVP 134 (397)
Q Consensus 98 --~~~I~Q~~-~t~~G~~Y~LTFsAa~~ca~~~~l~Vsv~ 134 (397)
-+-+.|.+ .=.--.-|.|+|+|.-...+ -.|+|.+-
T Consensus 71 WykafLaQr~~~gae~~mYtLsF~AkA~t~g-~qv~V~Ir 109 (212)
T PF15425_consen 71 WYKAFLAQRYTNGAEKGMYTLSFDAKADTNG-TQVHVFIR 109 (212)
T ss_dssp TTTEEEEEEE-S---SSEEEEEEEEEESSTT--EEEEEEE
T ss_pred HHHHHHHHHHhcccccceEEEEEEeecccCC-CcEEEEEE
Confidence 15677888 33445679999995322211 13555554
No 20
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=39.03 E-value=2.5e+02 Score=24.09 Aligned_cols=70 Identities=6% Similarity=0.035 Sum_probs=37.5
Q ss_pred EEEcccCCeEEEEEEecc------CCCCCCCCeeEEEEecCcceEEEEEec--CCCCeEEEEEEEEEccceeEEEEEE
Q 015986 276 MVETMANKDYSLTFSLGH------AGDKCKQPLAVMAFAGDQAQIVHYTED--ANSTFHDANVNFTAKADRTRIAFYS 345 (397)
Q Consensus 276 ~~~T~~G~~Y~LtF~lg~------A~n~c~g~~~v~~~~g~~~~~~~~~s~--g~~gw~~~s~~F~A~s~~T~L~F~S 345 (397)
.++..+|..|++.|...+ .+..+.....+.-+.....+.+...-. ...+-...++.|.+....|+|+|.-
T Consensus 40 ~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~T~lt~~~ 117 (146)
T cd08895 40 EFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNERIVYTDVFDDPSLSGEMTMTWTLSPVSGGTDVTIVQ 117 (146)
T ss_pred EEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCCEEEEEEEecCCCCCceEEEEEEEEecCCCEEEEEEE
Confidence 556678888888886532 111111122233333333333322211 1112236789999999999999965
No 21
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=38.74 E-value=1.3e+02 Score=28.55 Aligned_cols=75 Identities=17% Similarity=0.377 Sum_probs=45.8
Q ss_pred CCcEE---ee---eEEEEeC-CcccCceeEecCCCCeEEEc--------CCCceeeEEE-----EccCCCeEEEEEEecc
Q 015986 62 PSWKL---NG---TVELVSS-GQKQGGMILIVPQGSHAVRL--------GNDAEISQEV-----KVEKGSTYSVTFSAAR 121 (397)
Q Consensus 62 pGW~i---~g---~Veyi~s-g~~~~~~~~~vp~G~~aVeL--------G~~~~I~Q~~-----~t~~G~~Y~LTFsAa~ 121 (397)
..|++ .| .++|-.. .......+|.+|++...+.+ |.+-.-.+++ .+.+|.+|.|+|....
T Consensus 127 ~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~~~l~~~~~~t~~~g~~~~~~~~~~~~~~~v~~~~~y~lt~~~~~ 206 (235)
T PF14900_consen 127 SDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGEGGETLTLTLSGTNKDGESVSKEQTINKDISNVKAGDHYKLTFDPSD 206 (235)
T ss_pred cceEEEEEccCCccEEEeeccCCCCcceEEECCCCCceEEEEEEEEecCCcccccceeEeeccCcccCceEEEEEEeecc
Confidence 55766 22 4777221 11224567999998877776 2111344454 5779999999999764
Q ss_pred CcCCCcceEEEEcCC
Q 015986 122 TCAQLESLNVSVPPA 136 (397)
Q Consensus 122 ~ca~~~~l~Vsv~~~ 136 (397)
.-.+...+.|.+...
T Consensus 207 ~~~g~~~i~I~vd~~ 221 (235)
T PF14900_consen 207 SSAGSIGITITVDDT 221 (235)
T ss_pred CCCCeeEEEEEEeCC
Confidence 444445666666543
No 22
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=38.63 E-value=1.4e+02 Score=22.69 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=27.1
Q ss_pred cCCCCeEEEc--CCCceeeEEEEccCCCeEEEEEE
Q 015986 86 VPQGSHAVRL--GNDAEISQEVKVEKGSTYSVTFS 118 (397)
Q Consensus 86 vp~G~~aVeL--G~~~~I~Q~~~t~~G~~Y~LTFs 118 (397)
+|.|.|.|++ .+--...+++.+.+|+...|.+.
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 8899999999 33345678899999999998886
No 23
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=35.86 E-value=53 Score=27.61 Aligned_cols=36 Identities=25% Similarity=0.508 Sum_probs=29.1
Q ss_pred eEecCCCCeEEEc---CCCc-----eeeEEEEccCCCeEEEEEE
Q 015986 83 ILIVPQGSHAVRL---GNDA-----EISQEVKVEKGSTYSVTFS 118 (397)
Q Consensus 83 ~~~vp~G~~aVeL---G~~~-----~I~Q~~~t~~G~~Y~LTFs 118 (397)
+..+|.|.|-+++ |... -+..++...+|+.|+|--.
T Consensus 37 Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~ 80 (122)
T PF14344_consen 37 YLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAV 80 (122)
T ss_pred ceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEE
Confidence 5899999999999 4441 3467888999999999877
No 24
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=26.87 E-value=2.7e+02 Score=26.46 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.4
Q ss_pred EcccCCeEEEEEEec
Q 015986 278 ETMANKDYSLTFSLG 292 (397)
Q Consensus 278 ~T~~G~~Y~LtF~lg 292 (397)
.+.+|.+|.|+|.+.
T Consensus 191 ~v~~~~~y~lt~~~~ 205 (235)
T PF14900_consen 191 NVKAGDHYKLTFDPS 205 (235)
T ss_pred cccCceEEEEEEeec
Confidence 577999999999985
No 25
>PRK15252 putative fimbrial-like adhesin protein StcD; Provisional
Probab=23.81 E-value=3.5e+02 Score=28.07 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=48.9
Q ss_pred cccCCccCCCCCCCCCCCCCCcceecCCCCCCCcEEee-eEEEEeCCcccCceeEecCCCCeEEEcC----CCceeeEEE
Q 015986 31 AEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNG-TVELVSSGQKQGGMILIVPQGSHAVRLG----NDAEISQEV 105 (397)
Q Consensus 31 ~~~nLl~NG~FE~gp~~~~~n~t~~~~~s~ipGW~i~g-~Veyi~sg~~~~~~~~~vp~G~~aVeLG----~~~~I~Q~~ 105 (397)
.+++++...+|--.+... .+. .+.-+|=+-++ .+ | +..++.+.++.-+.|.+.|+|. ....| .+
T Consensus 28 ~~~~~i~~~~l~~~~~~s---~~~---~~~f~gt~Cs~~~~--v-t~~~~~~~ivGf~~~k~~l~~~it~~~~n~i--~l 96 (344)
T PRK15252 28 VQHNLVVQGDFALNQTQS---ATY---EHNFNDSSCVSTNT--I-TPMSPSDIIVGLYNDTIKLNLHFEWTNKNNI--TL 96 (344)
T ss_pred cccCceeecccccCCcce---eEE---EeeccCCcccCCCc--c-CCCCCccEEEEecCCeEEEEEEEEecCCCce--ec
Confidence 568888888887654211 111 11111211111 11 2 4445667778889999999992 22233 22
Q ss_pred EccC---CCeEEEEEEeccCcCCCcceEEEEcCCc
Q 015986 106 KVEK---GSTYSVTFSAARTCAQLESLNVSVPPAS 137 (397)
Q Consensus 106 ~t~~---G~~Y~LTFsAa~~ca~~~~l~Vsv~~~~ 137 (397)
+-.. -+.|+|+|.-.+.- +.++|++.++.
T Consensus 97 ~n~~g~~~a~ytv~~t~~~s~---~~v~vsa~~G~ 128 (344)
T PRK15252 97 SNNQTSFTSGYSVTVTPAASN---AKVNVSAGSGG 128 (344)
T ss_pred cCCCceEecceEEEEEEccCC---ccEEEecCCCC
Confidence 1111 12899999933221 25677765543
No 26
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=23.79 E-value=1e+02 Score=25.91 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=27.5
Q ss_pred CccCCCCCeEEEec-CCCcc-----eeEEEEEcccCCeEEEEEE
Q 015986 253 HYSVPQGKRAIELL-SGKEG-----IISQMVETMANKDYSLTFS 290 (397)
Q Consensus 253 ~~~vp~G~~aVeL~-~g~~~-----~I~Q~~~T~~G~~Y~LtF~ 290 (397)
+..+|.|.+.|++. ++... -+..++...+|+.|+|--.
T Consensus 37 Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~ 80 (122)
T PF14344_consen 37 YLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAV 80 (122)
T ss_pred ceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEE
Confidence 35678899999983 33331 3467889999999998665
No 27
>PF04300 FBA: F-box associated region; InterPro: IPR007397 Proteins containing this domain are associated with F-box domains (IPR001810 from INTERPRO), hence the name FBA. This domain is probably involved in binding other proteins that will be targeted for ubiquitination. Q9UK22 from SWISSPROT is involved in binding to N-glycosylated proteins.; GO: 0030163 protein catabolic process; PDB: 1UMI_A 2RJ2_A 2E33_A 1UMH_A 2E32_A 2E31_A.
Probab=22.65 E-value=6.3e+02 Score=23.55 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=27.7
Q ss_pred CCCeEEEEEEEEEcccee-EEEEEEcccccccCC--CCCcCcceeeeEEEEec
Q 015986 322 NSTFHDANVNFTAKADRT-RIAFYSVYYNTRTDD--MSSLCGPVVDDVRVWFS 371 (397)
Q Consensus 322 ~~gw~~~s~~F~A~s~~T-~L~F~S~~~~~~~d~--~~~~cGpvIDdVsV~v~ 371 (397)
...|...++.|+-=..-. .|.|.. .+.|. -...+|+-+-|-+|.|.
T Consensus 135 ~~~W~qvsh~F~~Yg~GVR~I~f~h----~GkD~~fw~G~yG~rvt~ssV~V~ 183 (184)
T PF04300_consen 135 DNPWKQVSHTFSNYGPGVRFIRFEH----GGKDTQFWAGHYGSRVTNSSVIVR 183 (184)
T ss_dssp T--EEEEEEEE-S--TTEEEEEEEE----EEEESS--SSS-SEEEEEEEEEEE
T ss_pred CCCcEEEEEEEeCCCCCCEEEEEEE----eeeccccCCcccCCeEeceEEEEe
Confidence 356999999998776555 466754 44432 13459999999999753
No 28
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=22.62 E-value=2.4e+02 Score=25.54 Aligned_cols=76 Identities=14% Similarity=0.223 Sum_probs=36.3
Q ss_pred CCCeEEEEEEecc-Cc-CCCcceEEEEcC---CcceEEE--Eeeee--------------ccCeeeEEEEEEEecceEEE
Q 015986 109 KGSTYSVTFSAAR-TC-AQLESLNVSVPP---ASQTIDL--QTLYN--------------VQGWDPYAWAFEAEDDNVKL 167 (397)
Q Consensus 109 ~G~~Y~LTFsAa~-~c-a~~~~l~Vsv~~---~~~~~~~--~t~y~--------------s~GW~~~s~~F~A~~~~t~l 167 (397)
+|. .+|+|.+.. .. ...|...|.+.. ....|.. ..... ...|..+.+++.+-.. .+
T Consensus 71 ~g~-~~i~f~v~~~~~~~~~E~y~V~~Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~v~Lp~gt~--Y~ 147 (167)
T PF07675_consen 71 SGA-QTISFWVKSQDASYGPEHYEVLYSTTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERTVDLPAGTK--YF 147 (167)
T ss_dssp TT--EEEEEEEEECTTTC---EEEEEEESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEEEEE-TT----EE
T ss_pred CCC-CEEEEEEEeccCCCCCceEEEEEecCCCChhheEEeeeeeecccccccccccccccCccEEEEEEeCCCCCc--EE
Confidence 675 699999432 21 134666665553 2233431 11111 1359999999966555 89
Q ss_pred EEECCCCCCCCCcCcceeeEEE
Q 015986 168 LFKNPGMEDDPTCGPIIDDIAI 189 (397)
Q Consensus 168 ~F~s~g~~~~~~cGPvIDdV~V 189 (397)
.|+... .+|. ..=+||||.|
T Consensus 148 afrh~~-~td~-~~l~iDDV~v 167 (167)
T PF07675_consen 148 AFRHYN-STDA-FYLMIDDVTV 167 (167)
T ss_dssp EEEEES---SS--EEEEEEEEE
T ss_pred EEEecc-CCCc-eEEEeccEEC
Confidence 996421 1233 3446999986
No 29
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=22.36 E-value=11 Score=24.21 Aligned_cols=6 Identities=17% Similarity=0.119 Sum_probs=5.1
Q ss_pred ecCCCc
Q 015986 370 FSGSSR 375 (397)
Q Consensus 370 v~~p~~ 375 (397)
||||.+
T Consensus 2 VPEPst 7 (25)
T PF07589_consen 2 VPEPST 7 (25)
T ss_pred CCCcHH
Confidence 689988
No 30
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=22.32 E-value=56 Score=23.00 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=9.9
Q ss_pred cccccccCCccCCC
Q 015986 27 SSILAEDGLVANGD 40 (397)
Q Consensus 27 ~~~~~~~nLl~NG~ 40 (397)
+..++..+.+.||+
T Consensus 18 a~~~~pG~ViING~ 31 (36)
T PF08194_consen 18 AVPATPGNVIINGK 31 (36)
T ss_pred cccCCCCeEEECce
Confidence 34455788999986
Done!