BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015988
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQL--AQAVQPLVLMLRAPDSD-HES 100
V + + L+ S D + + EAAR++ + + + A V+ LV +L + DS+ +
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 101 ALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYXXXXXXXXXXX--XVNKP 158
A AL N+A ++ IV+AG +E ++ L S D +Q+ K
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123
Query: 159 FISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ A G + +LV++L + + +A AL+N+++ PD + I+ + +V LL
Sbjct: 124 IVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 179
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQL--AQAVQPLVLMLRAPDSD-HESALLA 104
+ L+ S D +++ EAAR + + + + A V+ LV +L + DS+ + A A
Sbjct: 92 VKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 151
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQ 140
L N+A ++ IV+AG +E ++ L S D +Q
Sbjct: 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQ 187
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 5/169 (2%)
Query: 51 IQSDDPDLKLEAAREIRR-LTKTSQRCRRQL-AQAVQPLVLMLRAPDSD-HESALLALLN 107
+ SDD +L A R+ + L+ +++ + + A A+ LV +L +P+ + AL AL N
Sbjct: 21 LNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80
Query: 108 LAVKDEKNKIKIVEAGALEPIISFLQSPDLN-LQEYXXXXXXXXXXXXVNKPFISASGAI 166
+A + +++AGAL ++ L SP+ LQE + +GA+
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140
Query: 167 PLLVEILRYGSQQAKFDAVMALSNL-STHPDNLSIILGTNPIPSIVDLL 214
P LV++L ++Q +A+ ALSN+ S + + ++ +P++V LL
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 81 AQAVQPLVLMLRAPDSD-HESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLN- 138
A A+ LV +L +P+ + AL AL N+A + +++AGAL ++ L SP+
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 139 LQEYXXXXXXXXXXXXVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH 194
LQE K + +GA+ L ++ + +++ + +A AL L +H
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 52 QSDDPDLKLEAAREIRRLTKTSQRCRRQL-----AQAVQPLVLMLRAPDSD-HESALLAL 105
Q + PD + E +R+L++ + Q+ A A+ LV +L +P+ + AL AL
Sbjct: 20 QLNSPDQQ-ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 78
Query: 106 LNLAVKDEKNKIKIVEAGALEPIISFLQSPDLN-LQEYXXXXXXXXXXXXVNKPFISASG 164
N+A + +++AGAL ++ L SP+ LQE + +G
Sbjct: 79 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 138
Query: 165 AIPLLVEILRYGSQQAKFDAVMALSNLST 193
A+P LV++L ++Q +A+ ALSN+++
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIAS 167
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 163 SGAIPLLVEILRYGSQQAKFDAVMALSNL-STHPDNLSIILGTNPIPSIVDLL 214
+GA+P LV++L ++Q +A+ ALSN+ S + + ++ +P++V LL
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 52 QSDDPDLKLEAAREIRRLTKTSQRCRRQL-----AQAVQPLVLMLRAPDSD-HESALLAL 105
Q + PD + E +R+L++ + Q+ A A+ LV +L +P+ + AL AL
Sbjct: 20 QLNSPDQQ-ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 78
Query: 106 LNLAVKDEKNKIKIVEAGALEPIISFLQSPDLN-LQEYXXXXXXXXXXXXVNKPFISASG 164
N+A + +++AGAL ++ L SP+ LQE + +G
Sbjct: 79 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 138
Query: 165 AIPLLVEILRYGSQQAKFDAVMALSNLST 193
A+P LV++L ++Q +A+ ALSN+++
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIAS 167
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 163 SGAIPLLVEILRYGSQQAKFDAVMALSNL-STHPDNLSIILGTNPIPSIVDLL 214
+GA+P LV++L ++Q +A+ ALSN+ S + + ++ +P++V LL
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 51 IQSDDPDLKLEAAREIRR-LTKTSQRCRRQL-AQAVQPLVLMLRAPDSD-HESALLALLN 107
+ SDD +L A R+ + L+ +++ + + A A+ LV +L +P+ + AL AL N
Sbjct: 21 LNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80
Query: 108 LAVKDEKNKIKIVEAGALEPIISFLQSPDLN-LQEYXXXXXXXXXXXXVNKPFISASGAI 166
+A + +++AGAL ++ L SP+ LQE + +GA+
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140
Query: 167 PLLVEILRYGSQQAKFDAVMALSNLST 193
P LV++L ++Q +A+ ALSN+++
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIAS 167
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 163 SGAIPLLVEILRYGSQQAKFDAVMALSNL-STHPDNLSIILGTNPIPSIVDLL 214
+GA+P LV++L ++Q +A+ ALSN+ S + + ++ +P++V LL
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 93 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 152
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 153 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 212
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 213 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 267
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 339
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 340 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 371
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 109 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 168
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 355
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 109 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 168
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 355
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 65 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 124
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 125 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 184
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 185 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 239
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 311
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 343
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 109 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 168
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 355
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 95 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 154
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 155 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 214
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 215 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 269
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 341
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 342 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 373
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 58 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 117
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 118 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 177
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 178 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 232
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 304
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 305 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 336
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 54 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 113
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 114 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 173
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 174 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 228
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 300
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 301 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 332
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 54 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 113
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 114 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 173
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 174 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 228
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 300
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 301 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 332
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 59 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 118
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 119 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 178
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 179 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 233
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 305
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 306 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 337
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 85 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 144
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 145 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 204
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 205 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 259
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 331
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 332 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 363
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 58 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 117
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 118 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 177
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 178 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 232
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 304
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 305 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 336
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 59 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 118
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 119 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 178
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 179 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 233
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 305
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 306 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 337
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 59 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 118
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 119 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 178
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 179 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 233
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 305
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +A A++N ++
Sbjct: 306 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 337
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 5/172 (2%)
Query: 49 HLIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSD--HESALLAL 105
L + D P L+ EAA + + + TS+ + + P+ + L SD E A+ AL
Sbjct: 125 FLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWAL 184
Query: 106 LNLAVKDEKNKIKIVEAGALEPIISFL-QSPDLNLQEYXXXXXXXXXXXXVNKPFISASG 164
N+A K + ++ GAL P+++ L + L++ F
Sbjct: 185 GNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 244
Query: 165 AIPLLVEILRYGSQQAKFDAVMALSNLSTHP-DNLSIILGTNPIPSIVDLLI 215
A+P L ++ ++ DA ALS LS D + ++ P +V+LL+
Sbjct: 245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLALL 106
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 128 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 187
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PFI 160
N+A + +++ GA++P+++ L PDL+ Y NK P
Sbjct: 188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 247
Query: 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D+ A+S L+ P+ + +++ +P +V LL
Sbjct: 248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ +DP++ ++ I LT ++R + + V P LV +L A + + AL A
Sbjct: 257 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ K+++AGAL S L +P N+Q+ + + + +
Sbjct: 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 374
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + A A++N ++
Sbjct: 375 NHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 50 LIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSD--HESALLALL 106
L + D P L+ EAA + + + TS+ + + P+ + L SD E A+ AL
Sbjct: 88 LTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALG 147
Query: 107 NLAVKDEKNKIKIVEAGALEPIISFL-QSPDLNLQEYXXXXXXXXXXXXVNKPFISASGA 165
N+A K + ++ GAL P+++ L + L++ F A
Sbjct: 148 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPA 207
Query: 166 IPLLVEILRYGSQQAKFDAVMALSNLSTHP-DNLSIILGTNPIPSIVDLLI 215
+P L ++ ++ DA ALS LS D + ++ P +V+LL+
Sbjct: 208 LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 258
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 10/176 (5%)
Query: 49 HLIQSDDPDLKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--ESALLAL 105
L ++D ++ E+A + + + TS++ + + P + L A H E A+ AL
Sbjct: 59 FLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 118
Query: 106 LNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE--YXXXXXXXXXXXXVNK----PF 159
N+A + +++ GA++P+++ L PD++ Y NK P
Sbjct: 119 GNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPI 178
Query: 160 ISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLL 214
+ +P LV +L + + D A+S L+ P+ + +++ T +P +V LL
Sbjct: 179 DAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLL 234
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Query: 48 LHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQAVQP-LVLMLRAPDSDHES-ALLA 104
+ L+ DDP++ + I LT ++R + V P LV +L A + + AL A
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 105 LLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE---YXXXXXXXXXXXXVNKPFIS 161
+ N+ ++ +++AGAL S L +P N+Q+ + + + +
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ--VV 306
Query: 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193
G +P LV +L + + +AV A++N ++
Sbjct: 307 NHGLVPFLVSVLSKADFKTQKEAVWAVTNYTS 338
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 44 VHRALHLIQSDDPD-LKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--E 99
V R + ++ + P+ L+LEAA + + + TS + + + PL + L S E
Sbjct: 45 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 104
Query: 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYXXXXXXXXXXXXVNKPF 159
A+ AL N+A + +++ A+EPI+ S +L +P
Sbjct: 105 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 164
Query: 160 IS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195
S S A+P L +++ + DA A+S LS P
Sbjct: 165 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 201
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 44 VHRALHLIQSDDPD-LKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--E 99
V R + ++ + P+ L+LEAA + + + TS + + + PL + L S E
Sbjct: 46 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 105
Query: 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYXXXXXXXXXXXXVNKPF 159
A+ AL N+A + +++ A+EPI+ S +L +P
Sbjct: 106 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 165
Query: 160 IS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195
S S A+P L +++ + DA A+S LS P
Sbjct: 166 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 202
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 44 VHRALHLIQSDDPD-LKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--E 99
V R + ++ + P+ L+LEAA + + + TS + + + PL + L S E
Sbjct: 45 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 104
Query: 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYXXXXXXXXXXXXVNKPF 159
A+ AL N+A + +++ A+EPI+ S +L +P
Sbjct: 105 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 164
Query: 160 IS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195
S S A+P L +++ + DA A+S LS P
Sbjct: 165 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 201
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 44 VHRALHLIQSDDPD-LKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--E 99
V R + ++ + P+ L+LEAA + + + TS + + + PL + L S E
Sbjct: 44 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 103
Query: 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYXXXXXXXXXXXXVNKPF 159
A+ AL N+A + +++ A+EPI+ S +L +P
Sbjct: 104 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 163
Query: 160 IS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195
S S A+P L +++ + DA A+S LS P
Sbjct: 164 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 200
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 44 VHRALHLIQSDDPD-LKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--E 99
V R + ++ + P+ L+LEAA + + + TS + + + PL + L S E
Sbjct: 44 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 103
Query: 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYXXXXXXXXXXXXVNKPF 159
A+ AL N+A + +++ A+EPI+ S +L +P
Sbjct: 104 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 163
Query: 160 IS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195
S S A+P L +++ + DA A+S LS P
Sbjct: 164 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 200
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 44 VHRALHLIQSDDPD-LKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--E 99
V R + ++ + P+ L+LEAA + + + TS + + + PL + L S E
Sbjct: 46 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 105
Query: 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYXXXXXXXXXXXXVNKPF 159
A+ AL N+A + +++ A+EPI+ S +L +P
Sbjct: 106 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 165
Query: 160 IS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195
S S A+P L +++ + DA A+S LS P
Sbjct: 166 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 202
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Query: 44 VHRALHLIQSDDPD-LKLEAAREIRRL-TKTSQRCRRQLAQAVQPLVLMLRAPDSDH--E 99
V R + ++ + P+ L+LEAA + + + TS + + + PL + L S E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191
Query: 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYXXXXXXXXXXXXVNKPF 159
A+ AL N+A + +++ A+EPI+ S +L +P
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251
Query: 160 IS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195
S S A+P L +++ + DA A+S LS P
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288
>pdb|4HA0|A Chain A, Structure Of Geobacillus Kaustophilus Lactonase, Mutant
R230d With Zn2+
pdb|4HA0|B Chain B, Structure Of Geobacillus Kaustophilus Lactonase, Mutant
R230d With Zn2+
Length = 330
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV + IQG P + + RTLL LLRD + L D
Sbjct: 211 MCGNTDPDYHRKTLAYGVYIAFDDFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 270
Query: 333 TL 334
T+
Sbjct: 271 TV 272
>pdb|3TNB|A Chain A, Crystal Structure Of Gkap Mutant G209dR230H FROM
GEOBACILLUS Kaustophilus Hta426
pdb|3TNB|B Chain B, Crystal Structure Of Gkap Mutant G209dR230H FROM
GEOBACILLUS Kaustophilus Hta426
Length = 360
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV IQG P + + RTLL LLRD + L D
Sbjct: 241 MCDNTDPDYHRKTLAYGVYIAFDHFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 300
Query: 333 TL 334
T+
Sbjct: 301 TV 302
>pdb|3TN6|A Chain A, Crystal Structure Of Gkap Mutant R230h From Geobacillus
Kaustophilus Hta426
pdb|3TN6|B Chain B, Crystal Structure Of Gkap Mutant R230h From Geobacillus
Kaustophilus Hta426
Length = 360
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV IQG P + + RTLL LLRD + L D
Sbjct: 241 MCGNTDPDYHRKTLAYGVYIAFDHFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 300
Query: 333 TL 334
T+
Sbjct: 301 TV 302
>pdb|4H9Y|A Chain A, Structure Of Geobacillus Kaustophilus Lactonase, Mutant
E101n With Zn2+
pdb|4H9Y|B Chain B, Structure Of Geobacillus Kaustophilus Lactonase, Mutant
E101n With Zn2+
pdb|4H9Z|A Chain A, Structure Of Geobacillus Kaustophilus Lactonase, Mutant
E101n With Mn2+
pdb|4H9Z|B Chain B, Structure Of Geobacillus Kaustophilus Lactonase, Mutant
E101n With Mn2+
Length = 330
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV IQG P + + RTLL LLRD + L D
Sbjct: 211 MCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 270
Query: 333 TL 334
T+
Sbjct: 271 TV 272
>pdb|4H9U|A Chain A, Structure Of Geobacillus Kaustophilus Lactonase, Wild-Type
With Zn2+
pdb|4H9U|B Chain B, Structure Of Geobacillus Kaustophilus Lactonase, Wild-Type
With Zn2+
Length = 330
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV IQG P + + RTLL LLRD + L D
Sbjct: 211 MCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 270
Query: 333 TL 334
T+
Sbjct: 271 TV 272
>pdb|3TN4|A Chain A, Crystal Structure Of Gkap Mutant G209d From Geobacillus
Kaustophilus Hta426
pdb|3TN4|B Chain B, Crystal Structure Of Gkap Mutant G209d From Geobacillus
Kaustophilus Hta426
Length = 360
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV IQG P + + RTLL LLRD + L D
Sbjct: 241 MCDNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 300
Query: 333 TL 334
T+
Sbjct: 301 TV 302
>pdb|3F4D|A Chain A, Crystal Structure Of Organophosphorus Hydrolase From
Geobacillus Stearothermophilus Strain 10
pdb|3F4D|B Chain B, Crystal Structure Of Organophosphorus Hydrolase From
Geobacillus Stearothermophilus Strain 10
pdb|3F4C|A Chain A, Crystal Structure Of Organophosphorus Hydrolase From
Geobacillus Stearothermophilus Strain 10, With Glycerol
Bound
pdb|3F4C|B Chain B, Crystal Structure Of Organophosphorus Hydrolase From
Geobacillus Stearothermophilus Strain 10, With Glycerol
Bound
Length = 332
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV IQG P + + RTLL LLRD + L D
Sbjct: 207 MCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 266
Query: 333 TL 334
T+
Sbjct: 267 TV 268
>pdb|3ORW|A Chain A, Crystal Structure Of Thermophilic Phosphotriesterase From
Geobacillus Kaustophilus Hta426
pdb|3ORW|B Chain B, Crystal Structure Of Thermophilic Phosphotriesterase From
Geobacillus Kaustophilus Hta426
Length = 326
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV IQG P + + RTLL LLRD + L D
Sbjct: 207 MCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 266
Query: 333 TL 334
T+
Sbjct: 267 TV 268
>pdb|3TN5|A Chain A, Crystal Structure Of Gkap Mutant Y99l From Geobacillus
Kaustophilus Hta426
pdb|3TN5|B Chain B, Crystal Structure Of Gkap Mutant Y99l From Geobacillus
Kaustophilus Hta426
Length = 360
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV IQG P + + RTLL LLRD + L D
Sbjct: 241 MCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 300
Query: 333 TL 334
T+
Sbjct: 301 TV 302
>pdb|3TN3|A Chain A, Crystal Structure Of Gkap From Geobacillus Kaustophilus
Hta426
pdb|3TN3|B Chain B, Crystal Structure Of Gkap From Geobacillus Kaustophilus
Hta426
Length = 360
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 276 MCQSDRCKYREPILREGVIPGLLELTIQG---TPKSQTKARTLLQLLRDSPYPRSELQPD 332
MC + Y L GV IQG P + + RTLL LLRD + L D
Sbjct: 241 MCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYEKQIMLSHD 300
Query: 333 TL 334
T+
Sbjct: 301 TV 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,917,109
Number of Sequences: 62578
Number of extensions: 287571
Number of successful extensions: 927
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 72
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)