Query 015988
Match_columns 397
No_of_seqs 214 out of 2207
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:46:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2.4E-29 5.2E-34 271.1 32.6 325 38-367 400-768 (2102)
2 KOG0166 Karyopherin (importin) 100.0 5.5E-29 1.2E-33 236.8 25.5 321 40-365 107-438 (514)
3 PLN03200 cellulose synthase-in 100.0 4.8E-28 1E-32 261.1 32.9 323 36-364 440-812 (2102)
4 KOG4224 Armadillo repeat prote 100.0 3.8E-29 8.3E-34 223.6 20.2 321 36-364 120-447 (550)
5 COG5064 SRP1 Karyopherin (impo 100.0 2.9E-28 6.3E-33 216.3 17.9 323 37-365 109-445 (526)
6 KOG0166 Karyopherin (importin) 100.0 1.3E-27 2.8E-32 227.5 22.8 328 44-377 68-407 (514)
7 KOG4224 Armadillo repeat prote 100.0 3.9E-27 8.4E-32 210.8 20.1 286 32-323 157-448 (550)
8 COG5064 SRP1 Karyopherin (impo 99.9 1.7E-25 3.7E-30 198.8 15.0 316 43-366 72-401 (526)
9 KOG1048 Neural adherens juncti 99.9 8.5E-21 1.8E-25 186.4 23.5 326 40-367 231-645 (717)
10 PF05804 KAP: Kinesin-associat 99.9 7.6E-20 1.6E-24 183.7 30.0 251 100-363 268-520 (708)
11 PF05804 KAP: Kinesin-associat 99.9 2.3E-19 5E-24 180.2 29.5 301 36-342 284-629 (708)
12 KOG4199 Uncharacterized conser 99.8 1.6E-16 3.4E-21 141.8 27.6 292 53-348 118-432 (461)
13 KOG4199 Uncharacterized conser 99.8 4.9E-16 1.1E-20 138.6 26.3 289 34-325 137-448 (461)
14 KOG2122 Beta-catenin-binding p 99.8 2.2E-17 4.7E-22 169.1 17.0 260 62-323 318-603 (2195)
15 KOG2122 Beta-catenin-binding p 99.7 1.2E-16 2.5E-21 163.8 18.9 325 38-365 231-603 (2195)
16 KOG1048 Neural adherens juncti 99.7 1.4E-15 3E-20 150.0 17.5 277 84-364 235-596 (717)
17 PF04826 Arm_2: Armadillo-like 99.7 4.3E-15 9.3E-20 133.2 17.9 198 119-323 8-207 (254)
18 PF04826 Arm_2: Armadillo-like 99.6 7.8E-14 1.7E-18 125.1 23.6 240 36-287 6-252 (254)
19 KOG4500 Rho/Rac GTPase guanine 99.6 8.1E-14 1.7E-18 128.3 22.8 323 38-367 83-479 (604)
20 PF10508 Proteasom_PSMB: Prote 99.5 6.2E-12 1.3E-16 125.0 26.9 279 40-322 75-367 (503)
21 KOG4500 Rho/Rac GTPase guanine 99.5 6.6E-11 1.4E-15 109.4 25.8 285 54-342 54-412 (604)
22 PF10508 Proteasom_PSMB: Prote 99.4 1.3E-10 2.7E-15 115.7 26.1 311 47-363 43-366 (503)
23 KOG1222 Kinesin associated pro 99.4 3.3E-10 7.2E-15 106.1 25.5 240 100-342 282-643 (791)
24 cd00256 VATPase_H VATPase_H, r 99.4 1.6E-10 3.5E-15 110.4 22.8 274 43-319 102-423 (429)
25 cd00020 ARM Armadillo/beta-cat 99.3 3.1E-11 6.6E-16 96.4 13.1 118 159-278 2-120 (120)
26 cd00020 ARM Armadillo/beta-cat 99.3 8.3E-11 1.8E-15 93.8 13.5 117 200-320 2-119 (120)
27 PRK09687 putative lyase; Provi 99.2 2.7E-09 5.9E-14 97.9 20.3 234 44-317 25-278 (280)
28 PF03224 V-ATPase_H_N: V-ATPas 99.2 1.1E-09 2.4E-14 102.7 17.7 231 84-315 57-308 (312)
29 PRK09687 putative lyase; Provi 99.2 7.1E-09 1.5E-13 95.2 22.0 195 84-321 25-221 (280)
30 KOG3678 SARM protein (with ste 99.1 3.4E-09 7.4E-14 99.1 16.8 270 38-322 176-453 (832)
31 KOG1222 Kinesin associated pro 99.1 2.3E-08 5.1E-13 93.9 21.2 286 32-323 335-665 (791)
32 KOG2759 Vacuolar H+-ATPase V1 99.1 1.4E-08 3.1E-13 94.1 19.7 274 44-320 116-437 (442)
33 PF03224 V-ATPase_H_N: V-ATPas 99.1 5E-09 1.1E-13 98.3 15.6 222 44-269 57-305 (312)
34 PRK13800 putative oxidoreducta 99.0 1.3E-07 2.8E-12 100.9 27.2 226 40-319 619-865 (897)
35 cd00256 VATPase_H VATPase_H, r 99.0 2.8E-07 6.1E-12 88.4 24.9 317 41-361 52-423 (429)
36 KOG2973 Uncharacterized conser 99.0 2.7E-07 6E-12 82.4 21.6 269 43-322 4-316 (353)
37 KOG0946 ER-Golgi vesicle-tethe 99.0 2.5E-07 5.4E-12 91.8 23.0 291 36-329 16-355 (970)
38 KOG1293 Proteins containing ar 98.9 1.6E-07 3.5E-12 91.6 19.5 146 174-322 387-534 (678)
39 PRK13800 putative oxidoreducta 98.9 4.4E-07 9.5E-12 96.9 24.5 230 40-318 650-896 (897)
40 KOG1293 Proteins containing ar 98.9 5.1E-07 1.1E-11 88.2 21.8 326 37-365 46-535 (678)
41 KOG0168 Putative ubiquitin fus 98.9 3.2E-07 6.8E-12 91.7 20.2 254 42-303 167-437 (1051)
42 KOG2160 Armadillo/beta-catenin 98.8 1.9E-07 4E-12 85.7 16.8 182 97-279 99-283 (342)
43 KOG0946 ER-Golgi vesicle-tethe 98.8 1.4E-06 3.1E-11 86.6 23.6 294 82-385 22-367 (970)
44 KOG2023 Nuclear transport rece 98.8 4.1E-07 8.9E-12 88.8 17.4 304 41-364 127-506 (885)
45 PF01602 Adaptin_N: Adaptin N 98.7 5E-06 1.1E-10 84.0 24.6 298 42-374 42-341 (526)
46 KOG2160 Armadillo/beta-catenin 98.7 2.9E-06 6.3E-11 78.0 20.2 186 135-323 95-285 (342)
47 PF01602 Adaptin_N: Adaptin N 98.7 2.8E-06 6.2E-11 85.8 22.5 254 43-324 80-336 (526)
48 KOG0168 Putative ubiquitin fus 98.6 1.3E-05 2.8E-10 80.6 23.1 213 40-259 209-436 (1051)
49 KOG2171 Karyopherin (importin) 98.6 4.2E-06 9.1E-11 86.8 18.1 239 39-279 345-595 (1075)
50 KOG2973 Uncharacterized conser 98.5 6.7E-06 1.5E-10 73.7 16.9 275 85-367 6-319 (353)
51 KOG2171 Karyopherin (importin) 98.5 2.5E-05 5.5E-10 81.2 22.8 309 42-358 118-457 (1075)
52 PF14664 RICTOR_N: Rapamycin-i 98.5 8.9E-05 1.9E-09 70.8 25.0 233 39-276 22-267 (371)
53 PTZ00429 beta-adaptin; Provisi 98.4 0.00048 1E-08 71.4 28.2 184 125-320 142-325 (746)
54 KOG4646 Uncharacterized conser 98.3 3.4E-06 7.5E-11 66.4 8.9 150 164-317 16-166 (173)
55 KOG2759 Vacuolar H+-ATPase V1 98.3 0.00031 6.6E-09 65.9 23.2 298 42-348 65-424 (442)
56 PF05536 Neurochondrin: Neuroc 98.3 0.00015 3.4E-09 72.7 21.3 234 84-321 7-261 (543)
57 KOG4413 26S proteasome regulat 98.3 0.00012 2.7E-09 66.3 18.0 297 62-362 63-376 (524)
58 KOG4646 Uncharacterized conser 98.2 1.5E-05 3.2E-10 63.0 9.7 116 124-241 17-133 (173)
59 KOG3678 SARM protein (with ste 98.2 1.3E-05 2.8E-10 75.7 10.6 173 157-333 173-348 (832)
60 PTZ00429 beta-adaptin; Provisi 98.2 0.00094 2E-08 69.2 24.9 255 41-322 31-286 (746)
61 PF00514 Arm: Armadillo/beta-c 98.1 4.7E-06 1E-10 52.7 4.8 40 112-151 1-40 (41)
62 KOG1241 Karyopherin (importin) 98.1 0.00062 1.3E-08 68.2 21.3 312 42-366 129-480 (859)
63 COG5369 Uncharacterized conser 98.1 0.00012 2.6E-09 70.4 15.4 199 101-302 409-618 (743)
64 PF10165 Ric8: Guanine nucleot 98.1 0.00079 1.7E-08 66.2 21.3 226 97-323 48-339 (446)
65 KOG0212 Uncharacterized conser 98.1 0.00011 2.5E-09 70.9 14.7 321 40-370 82-413 (675)
66 PF05536 Neurochondrin: Neuroc 98.1 0.00056 1.2E-08 68.8 20.1 190 125-322 7-214 (543)
67 KOG1789 Endocytosis protein RM 98.0 0.0037 8.1E-08 64.9 25.0 294 42-341 1771-2139(2235)
68 TIGR02270 conserved hypothetic 98.0 0.0019 4.2E-08 62.5 22.0 58 249-322 240-297 (410)
69 KOG1789 Endocytosis protein RM 98.0 0.005 1.1E-07 64.0 24.7 302 58-365 1741-2118(2235)
70 KOG2023 Nuclear transport rece 97.9 0.00065 1.4E-08 67.1 16.8 272 44-322 395-733 (885)
71 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0018 3.8E-08 62.0 19.7 207 155-367 16-230 (371)
72 COG5369 Uncharacterized conser 97.9 0.00025 5.3E-09 68.3 13.2 256 63-320 410-740 (743)
73 PF00514 Arm: Armadillo/beta-c 97.9 2.6E-05 5.6E-10 49.2 4.6 40 282-321 2-41 (41)
74 KOG1077 Vesicle coat complex A 97.9 0.00082 1.8E-08 66.8 16.4 269 47-328 116-405 (938)
75 KOG2734 Uncharacterized conser 97.8 0.0096 2.1E-07 56.4 21.9 239 37-279 120-401 (536)
76 PF11841 DUF3361: Domain of un 97.7 0.00071 1.5E-08 55.8 11.8 133 158-290 5-143 (160)
77 PF13646 HEAT_2: HEAT repeats; 97.7 0.00023 5E-09 53.1 8.4 87 125-232 1-88 (88)
78 KOG4413 26S proteasome regulat 97.7 0.0066 1.4E-07 55.4 18.6 280 41-324 81-380 (524)
79 PF10165 Ric8: Guanine nucleot 97.7 0.013 2.9E-07 57.7 22.5 254 34-291 14-346 (446)
80 COG5240 SEC21 Vesicle coat com 97.7 0.017 3.6E-07 56.6 22.2 279 47-342 269-579 (898)
81 KOG0212 Uncharacterized conser 97.6 0.0044 9.5E-08 60.3 17.5 269 40-321 165-444 (675)
82 KOG1517 Guanine nucleotide bin 97.6 0.006 1.3E-07 63.4 18.9 256 57-319 451-730 (1387)
83 KOG2734 Uncharacterized conser 97.6 0.015 3.2E-07 55.2 19.9 222 98-324 101-349 (536)
84 KOG1062 Vesicle coat complex A 97.6 0.014 3E-07 59.2 20.1 241 40-320 140-413 (866)
85 COG5231 VMA13 Vacuolar H+-ATPa 97.5 0.012 2.7E-07 53.5 17.5 223 97-321 165-428 (432)
86 TIGR02270 conserved hypothetic 97.5 0.045 9.7E-07 53.1 22.7 118 125-276 88-205 (410)
87 COG1413 FOG: HEAT repeat [Ener 97.5 0.0097 2.1E-07 56.4 17.6 187 83-321 44-242 (335)
88 KOG1242 Protein containing ada 97.5 0.033 7.1E-07 55.1 20.9 188 138-341 269-462 (569)
89 smart00185 ARM Armadillo/beta- 97.5 0.00039 8.5E-09 43.5 5.3 39 113-151 2-40 (41)
90 KOG1059 Vesicle coat complex A 97.4 0.026 5.6E-07 56.7 20.2 256 40-324 142-405 (877)
91 smart00185 ARM Armadillo/beta- 97.4 0.00026 5.6E-09 44.3 4.1 39 155-193 3-41 (41)
92 KOG1062 Vesicle coat complex A 97.4 0.016 3.4E-07 58.9 18.2 248 52-327 117-385 (866)
93 PF12348 CLASP_N: CLASP N term 97.4 0.0053 1.1E-07 54.8 13.5 175 52-234 17-204 (228)
94 PF12348 CLASP_N: CLASP N term 97.3 0.0067 1.4E-07 54.1 13.9 185 174-369 17-212 (228)
95 COG1413 FOG: HEAT repeat [Ener 97.3 0.058 1.3E-06 51.1 20.9 187 42-279 43-243 (335)
96 KOG1241 Karyopherin (importin) 97.3 0.054 1.2E-06 54.8 20.6 305 55-367 187-534 (859)
97 PF11841 DUF3361: Domain of un 97.2 0.01 2.2E-07 49.0 12.7 121 197-319 3-129 (160)
98 PF13646 HEAT_2: HEAT repeats; 97.2 0.0029 6.3E-08 47.0 8.5 85 44-148 1-88 (88)
99 KOG1824 TATA-binding protein-i 97.2 0.4 8.6E-06 50.1 26.0 162 54-217 582-746 (1233)
100 KOG1059 Vesicle coat complex A 97.1 0.066 1.4E-06 53.9 18.9 225 33-280 172-403 (877)
101 COG5240 SEC21 Vesicle coat com 97.1 0.15 3.1E-06 50.3 20.7 261 84-363 266-555 (898)
102 COG5181 HSH155 U2 snRNP splice 97.1 0.042 9.1E-07 54.4 17.1 263 41-323 603-872 (975)
103 PF05004 IFRD: Interferon-rela 97.1 0.11 2.5E-06 48.5 19.8 232 128-363 48-302 (309)
104 COG5215 KAP95 Karyopherin (imp 97.1 0.12 2.7E-06 50.8 20.0 270 42-323 133-439 (858)
105 KOG0213 Splicing factor 3b, su 97.1 0.06 1.3E-06 54.4 18.0 259 44-324 801-1068(1172)
106 KOG1242 Protein containing ada 97.0 0.028 6.1E-07 55.6 15.6 261 39-323 131-403 (569)
107 KOG0213 Splicing factor 3b, su 97.0 0.33 7.3E-06 49.3 22.9 111 250-365 800-914 (1172)
108 KOG3036 Protein involved in ce 96.9 0.12 2.7E-06 45.5 16.7 178 98-278 96-291 (293)
109 PF09759 Atx10homo_assoc: Spin 96.8 0.0017 3.6E-08 49.5 4.2 64 265-329 2-68 (102)
110 KOG2259 Uncharacterized conser 96.8 0.02 4.3E-07 57.0 12.3 257 41-323 197-477 (823)
111 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0018 3.8E-08 43.6 3.3 55 137-191 1-55 (55)
112 PF09759 Atx10homo_assoc: Spin 96.6 0.0097 2.1E-07 45.4 7.1 63 59-121 3-70 (102)
113 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0042 9E-08 41.8 4.4 55 263-319 1-55 (55)
114 COG5231 VMA13 Vacuolar H+-ATPa 96.5 0.19 4.1E-06 46.0 15.5 224 50-278 157-428 (432)
115 PF04078 Rcd1: Cell differenti 96.5 0.11 2.4E-06 46.4 13.7 175 140-320 67-261 (262)
116 KOG1517 Guanine nucleotide bin 96.4 0.11 2.4E-06 54.5 15.2 156 39-194 509-672 (1387)
117 KOG3036 Protein involved in ce 96.4 0.61 1.3E-05 41.3 20.0 178 140-321 96-291 (293)
118 PRK14707 hypothetical protein; 96.4 1.2 2.6E-05 50.6 23.4 297 40-343 203-510 (2710)
119 KOG4151 Myosin assembly protei 96.4 0.086 1.9E-06 53.8 14.0 202 112-321 493-699 (748)
120 KOG2259 Uncharacterized conser 96.4 0.076 1.6E-06 53.0 13.1 180 43-233 235-472 (823)
121 PF04063 DUF383: Domain of unk 96.3 0.029 6.2E-07 48.4 9.1 120 221-342 9-157 (192)
122 KOG1824 TATA-binding protein-i 96.2 0.14 3E-06 53.3 14.5 237 36-280 41-288 (1233)
123 KOG2999 Regulator of Rac1, req 96.2 0.15 3.3E-06 49.9 14.0 166 125-290 85-254 (713)
124 KOG4151 Myosin assembly protei 96.2 0.059 1.3E-06 54.9 11.7 195 35-235 497-698 (748)
125 KOG2999 Regulator of Rac1, req 96.2 0.19 4.2E-06 49.2 14.4 155 165-321 84-242 (713)
126 COG5181 HSH155 U2 snRNP splice 96.1 0.075 1.6E-06 52.6 11.7 151 124-278 605-759 (975)
127 PF08569 Mo25: Mo25-like; Int 96.1 0.22 4.7E-06 47.0 14.4 197 40-240 74-287 (335)
128 KOG1061 Vesicle coat complex A 96.1 0.16 3.5E-06 51.7 14.1 144 41-192 85-230 (734)
129 PF04078 Rcd1: Cell differenti 96.1 0.13 2.9E-06 46.0 12.0 218 54-276 7-260 (262)
130 KOG0567 HEAT repeat-containing 96.0 0.84 1.8E-05 40.9 16.4 191 84-320 69-279 (289)
131 PF13764 E3_UbLigase_R4: E3 ub 95.9 0.42 9.2E-06 50.1 16.9 238 119-363 113-406 (802)
132 KOG1061 Vesicle coat complex A 95.9 0.2 4.4E-06 51.0 13.8 179 124-314 122-301 (734)
133 KOG1078 Vesicle coat complex C 95.9 1 2.2E-05 46.2 18.6 260 38-320 241-531 (865)
134 PF04063 DUF383: Domain of unk 95.8 0.066 1.4E-06 46.2 8.9 92 124-215 53-157 (192)
135 PF13764 E3_UbLigase_R4: E3 ub 95.8 2.3 5.1E-05 44.8 21.6 235 84-324 119-409 (802)
136 PF11698 V-ATPase_H_C: V-ATPas 95.8 0.029 6.4E-07 44.0 5.9 69 250-319 44-113 (119)
137 PF07814 WAPL: Wings apart-lik 95.7 0.58 1.3E-05 44.8 15.9 213 82-296 21-316 (361)
138 PF12755 Vac14_Fab1_bd: Vacuol 95.7 0.059 1.3E-06 40.9 7.2 66 249-318 27-94 (97)
139 PF12719 Cnd3: Nuclear condens 95.6 1.3 2.9E-05 41.2 17.7 170 42-217 26-209 (298)
140 KOG1943 Beta-tubulin folding c 95.6 3.2 6.9E-05 44.3 21.2 246 41-312 340-602 (1133)
141 PF08045 CDC14: Cell division 95.5 0.12 2.5E-06 46.6 9.6 96 139-234 107-205 (257)
142 KOG1077 Vesicle coat complex A 95.4 3.7 8.1E-05 41.9 20.0 305 47-376 79-408 (938)
143 KOG1060 Vesicle coat complex A 95.4 1.1 2.4E-05 46.0 16.5 84 23-111 264-351 (968)
144 KOG1248 Uncharacterized conser 95.3 1.1 2.4E-05 48.0 17.1 218 52-280 664-900 (1176)
145 PF11701 UNC45-central: Myosin 95.3 0.19 4.1E-06 42.0 9.7 145 166-318 5-156 (157)
146 KOG1248 Uncharacterized conser 95.3 0.77 1.7E-05 49.1 15.9 223 97-322 670-899 (1176)
147 PF11701 UNC45-central: Myosin 95.3 0.2 4.4E-06 41.8 9.8 142 45-191 6-157 (157)
148 KOG1058 Vesicle coat complex C 95.2 1.5 3.3E-05 44.8 17.0 128 137-279 220-347 (948)
149 PF08569 Mo25: Mo25-like; Int 95.2 2.8 6.1E-05 39.6 20.2 204 118-324 71-286 (335)
150 COG5215 KAP95 Karyopherin (imp 95.2 3.7 8E-05 40.9 19.6 273 42-321 366-668 (858)
151 PF08045 CDC14: Cell division 95.2 0.47 1E-05 42.7 12.2 97 58-154 107-209 (257)
152 KOG2032 Uncharacterized conser 95.1 1.5 3.2E-05 42.7 15.8 157 162-320 252-415 (533)
153 COG5096 Vesicle coat complex, 95.0 0.82 1.8E-05 47.4 14.9 102 84-194 94-196 (757)
154 PF12717 Cnd1: non-SMC mitotic 94.9 1.9 4.2E-05 36.7 15.2 90 97-194 4-93 (178)
155 PF11698 V-ATPase_H_C: V-ATPas 94.9 0.1 2.2E-06 40.9 6.4 68 84-151 45-114 (119)
156 KOG2611 Neurochondrin/leucine- 94.9 4.1 8.9E-05 39.7 18.8 187 128-319 16-223 (698)
157 KOG1060 Vesicle coat complex A 94.8 5.8 0.00013 41.1 25.6 286 53-377 154-472 (968)
158 KOG1240 Protein kinase contain 94.8 0.84 1.8E-05 49.0 14.4 260 44-326 424-690 (1431)
159 KOG1240 Protein kinase contain 94.8 0.81 1.7E-05 49.1 14.3 254 42-322 462-726 (1431)
160 PF06371 Drf_GBD: Diaphanous G 94.7 0.045 9.7E-07 47.1 4.6 81 198-278 100-187 (187)
161 PF08324 PUL: PUL domain; Int 94.6 0.52 1.1E-05 43.1 11.5 185 84-269 65-265 (268)
162 PF12717 Cnd1: non-SMC mitotic 94.5 0.94 2E-05 38.6 12.1 92 221-322 2-93 (178)
163 PF12755 Vac14_Fab1_bd: Vacuol 94.4 0.68 1.5E-05 35.1 9.8 88 59-150 3-94 (97)
164 PF06025 DUF913: Domain of Unk 94.4 4.2 9E-05 39.2 17.4 148 141-290 78-243 (379)
165 KOG3665 ZYG-1-like serine/thre 94.3 0.93 2E-05 47.3 13.7 195 104-319 494-695 (699)
166 PF05004 IFRD: Interferon-rela 94.3 2.7 5.7E-05 39.4 15.5 149 125-278 88-257 (309)
167 COG5096 Vesicle coat complex, 94.2 3.6 7.8E-05 42.9 17.3 168 132-322 28-196 (757)
168 PF02985 HEAT: HEAT repeat; I 93.9 0.12 2.5E-06 30.1 3.7 29 251-279 2-30 (31)
169 PF06025 DUF913: Domain of Unk 93.9 3 6.4E-05 40.2 15.4 93 84-176 108-208 (379)
170 PF14668 RICTOR_V: Rapamycin-i 93.8 0.24 5.2E-06 35.3 5.8 67 224-293 4-71 (73)
171 KOG4653 Uncharacterized conser 93.7 3.3 7.1E-05 43.2 15.6 188 37-236 722-918 (982)
172 KOG1788 Uncharacterized conser 93.6 2.8 6E-05 44.7 15.1 254 63-323 663-984 (2799)
173 KOG2032 Uncharacterized conser 93.6 2.6 5.7E-05 41.1 14.1 142 97-242 274-421 (533)
174 PF11707 Npa1: Ribosome 60S bi 93.6 4.8 0.0001 38.1 16.1 154 43-196 57-240 (330)
175 KOG2274 Predicted importin 9 [ 93.4 3.1 6.6E-05 43.6 15.0 182 175-367 502-693 (1005)
176 PF07814 WAPL: Wings apart-lik 93.3 7.3 0.00016 37.4 17.0 236 42-280 21-357 (361)
177 KOG0211 Protein phosphatase 2A 93.2 7 0.00015 41.0 17.6 296 16-323 210-510 (759)
178 PF02985 HEAT: HEAT repeat; I 93.0 0.23 5E-06 28.8 4.0 28 44-71 2-29 (31)
179 KOG2611 Neurochondrin/leucine- 93.0 6.6 0.00014 38.4 15.6 133 166-303 13-163 (698)
180 KOG2274 Predicted importin 9 [ 92.9 14 0.00031 38.9 23.2 216 100-322 469-690 (1005)
181 PF05918 API5: Apoptosis inhib 92.8 1.3 2.7E-05 44.6 11.2 131 43-189 24-158 (556)
182 KOG1832 HIV-1 Vpr-binding prot 92.7 2.2 4.8E-05 44.6 12.7 130 199-329 595-781 (1516)
183 PF06371 Drf_GBD: Diaphanous G 92.7 0.73 1.6E-05 39.4 8.5 79 239-320 98-186 (187)
184 KOG4653 Uncharacterized conser 92.6 1.2 2.5E-05 46.3 10.6 179 134-323 738-920 (982)
185 KOG1078 Vesicle coat complex C 92.5 15 0.00032 38.2 22.5 245 95-362 259-531 (865)
186 KOG1058 Vesicle coat complex C 92.5 1.5 3.2E-05 44.9 11.1 152 124-298 318-486 (948)
187 PF05918 API5: Apoptosis inhib 92.4 3.1 6.7E-05 41.8 13.3 121 135-275 34-159 (556)
188 KOG4464 Signaling protein RIC- 92.3 11 0.00024 36.1 16.3 263 55-319 110-430 (532)
189 PF12031 DUF3518: Domain of un 92.2 0.91 2E-05 40.2 8.2 88 223-311 140-235 (257)
190 PF14668 RICTOR_V: Rapamycin-i 92.1 0.45 9.7E-06 33.9 5.2 67 181-249 4-70 (73)
191 PRK14707 hypothetical protein; 92.0 29 0.00063 40.4 24.6 281 55-342 345-635 (2710)
192 PF12460 MMS19_C: RNAPII trans 91.8 2.5 5.4E-05 41.4 11.9 110 84-195 273-396 (415)
193 KOG2933 Uncharacterized conser 91.3 4 8.6E-05 37.5 11.5 138 43-191 89-232 (334)
194 COG5209 RCD1 Uncharacterized p 91.2 0.72 1.6E-05 40.2 6.4 100 223-323 116-220 (315)
195 KOG4464 Signaling protein RIC- 91.1 10 0.00022 36.3 14.2 150 45-194 48-232 (532)
196 KOG0414 Chromosome condensatio 90.8 3.3 7.1E-05 44.6 11.9 129 53-194 934-1065(1251)
197 PF12719 Cnd3: Nuclear condens 90.6 7.7 0.00017 36.0 13.5 162 89-260 34-208 (298)
198 KOG0567 HEAT repeat-containing 90.3 13 0.00029 33.4 14.2 207 33-279 58-281 (289)
199 KOG1967 DNA repair/transcripti 90.2 2.7 5.8E-05 44.1 10.4 185 84-272 817-1018(1030)
200 KOG0301 Phospholipase A2-activ 90.1 24 0.00052 36.0 16.8 175 39-218 521-729 (745)
201 KOG2137 Protein kinase [Signal 89.7 5.8 0.00013 40.6 12.2 132 122-262 388-521 (700)
202 cd03568 VHS_STAM VHS domain fa 89.6 1.8 4E-05 35.4 7.4 73 250-322 38-111 (144)
203 PF12031 DUF3518: Domain of un 88.9 2.1 4.6E-05 37.9 7.6 80 138-217 139-228 (257)
204 KOG4535 HEAT and armadillo rep 88.8 0.31 6.8E-06 47.1 2.6 175 142-319 410-601 (728)
205 KOG2137 Protein kinase [Signal 88.7 12 0.00027 38.3 13.7 140 161-312 386-528 (700)
206 KOG0301 Phospholipase A2-activ 88.6 8.3 0.00018 39.2 12.2 167 86-260 549-727 (745)
207 cd03567 VHS_GGA VHS domain fam 87.9 2.7 5.9E-05 34.2 7.2 72 250-321 39-116 (139)
208 cd03561 VHS VHS domain family; 87.8 3.2 7E-05 33.4 7.7 72 250-321 38-112 (133)
209 KOG1820 Microtubule-associated 87.8 15 0.00033 38.9 14.2 189 35-234 246-441 (815)
210 PF10363 DUF2435: Protein of u 87.5 3.6 7.9E-05 30.8 7.2 72 42-113 3-75 (92)
211 cd03569 VHS_Hrs_Vps27p VHS dom 87.4 3 6.5E-05 34.1 7.2 73 249-321 41-114 (142)
212 KOG0915 Uncharacterized conser 87.2 52 0.0011 37.1 17.9 237 42-282 1039-1310(1702)
213 KOG0414 Chromosome condensatio 87.2 4.7 0.0001 43.5 10.1 141 165-322 920-1065(1251)
214 KOG1832 HIV-1 Vpr-binding prot 87.0 2.3 5.1E-05 44.4 7.6 161 160-322 597-825 (1516)
215 KOG1788 Uncharacterized conser 86.8 51 0.0011 35.9 17.0 248 40-303 464-785 (2799)
216 KOG0211 Protein phosphatase 2A 86.4 18 0.00039 38.1 13.8 188 118-319 474-662 (759)
217 PF08167 RIX1: rRNA processing 86.2 13 0.00028 31.2 10.7 109 40-152 23-143 (165)
218 COG5098 Chromosome condensatio 86.0 40 0.00087 34.8 15.2 129 54-194 908-1038(1128)
219 PF12460 MMS19_C: RNAPII trans 85.8 12 0.00027 36.6 12.0 112 40-154 269-396 (415)
220 PF08324 PUL: PUL domain; Int 85.8 14 0.0003 33.6 11.7 152 57-210 78-249 (268)
221 KOG2933 Uncharacterized conser 85.4 8.6 0.00019 35.4 9.6 139 165-319 89-232 (334)
222 smart00288 VHS Domain present 84.8 4.8 0.0001 32.4 7.2 72 250-321 38-111 (133)
223 KOG1967 DNA repair/transcripti 84.6 9.1 0.0002 40.4 10.4 145 41-187 866-1018(1030)
224 PF11707 Npa1: Ribosome 60S bi 84.0 23 0.00049 33.5 12.5 158 166-323 58-239 (330)
225 KOG2956 CLIP-associating prote 83.8 46 0.00099 32.7 14.1 170 98-279 304-478 (516)
226 PF12530 DUF3730: Protein of u 83.8 31 0.00068 30.7 16.0 165 50-233 9-186 (234)
227 COG5209 RCD1 Uncharacterized p 83.8 30 0.00065 30.5 13.0 142 61-203 119-278 (315)
228 PF01347 Vitellogenin_N: Lipop 83.6 13 0.00028 38.4 11.6 94 123-233 486-586 (618)
229 PF08167 RIX1: rRNA processing 83.6 12 0.00026 31.4 9.4 115 249-366 25-146 (165)
230 PF01347 Vitellogenin_N: Lipop 83.3 46 0.00099 34.4 15.5 169 84-275 397-586 (618)
231 KOG3665 ZYG-1-like serine/thre 83.1 65 0.0014 33.9 16.9 149 187-337 494-672 (699)
232 KOG1991 Nuclear transport rece 83.1 72 0.0016 34.3 19.8 261 50-320 470-756 (1010)
233 PF08506 Cse1: Cse1; InterPro 82.9 37 0.00081 32.6 13.5 163 147-316 194-370 (370)
234 COG5218 YCG1 Chromosome conden 82.0 24 0.00052 35.6 11.7 113 39-161 88-205 (885)
235 PF00790 VHS: VHS domain; Int 81.7 4 8.7E-05 33.2 5.6 72 250-321 43-118 (140)
236 KOG1566 Conserved protein Mo25 81.7 45 0.00097 31.0 14.5 196 40-239 77-289 (342)
237 KOG2956 CLIP-associating prote 80.4 55 0.0012 32.2 13.2 129 55-192 343-476 (516)
238 KOG1243 Protein kinase [Genera 79.9 45 0.00097 34.4 13.1 187 120-319 327-513 (690)
239 KOG1820 Microtubule-associated 79.6 92 0.002 33.3 16.4 189 168-370 257-450 (815)
240 COG5218 YCG1 Chromosome conden 79.6 54 0.0012 33.2 13.2 127 103-239 73-199 (885)
241 KOG2025 Chromosome condensatio 79.1 85 0.0018 32.6 16.2 116 122-245 84-199 (892)
242 KOG1991 Nuclear transport rece 77.9 1.1E+02 0.0023 33.1 25.6 277 37-319 405-709 (1010)
243 PF14500 MMS19_N: Dos2-interac 77.9 53 0.0012 29.9 12.2 144 127-278 3-153 (262)
244 PF14726 RTTN_N: Rotatin, an a 77.8 20 0.00043 27.2 7.8 70 247-318 28-97 (98)
245 cd03561 VHS VHS domain family; 77.1 14 0.00029 29.8 7.3 75 164-238 37-114 (133)
246 KOG0915 Uncharacterized conser 76.4 1.5E+02 0.0032 33.9 18.4 217 44-265 958-1188(1702)
247 KOG2025 Chromosome condensatio 76.0 17 0.00038 37.3 8.9 75 248-324 84-158 (892)
248 cd00197 VHS_ENTH_ANTH VHS, ENT 75.4 18 0.0004 28.1 7.5 70 250-319 38-113 (115)
249 KOG1943 Beta-tubulin folding c 75.0 1.3E+02 0.0029 32.8 21.8 151 163-319 340-498 (1133)
250 KOG1020 Sister chromatid cohes 74.1 90 0.0019 35.4 14.1 108 42-156 816-925 (1692)
251 PF12530 DUF3730: Protein of u 73.9 65 0.0014 28.7 12.6 175 126-322 3-190 (234)
252 cd03572 ENTH_epsin_related ENT 72.8 15 0.00032 29.2 6.2 72 250-321 39-119 (122)
253 KOG4535 HEAT and armadillo rep 72.1 1.1E+02 0.0023 30.4 13.6 276 55-341 268-581 (728)
254 PF11865 DUF3385: Domain of un 71.8 57 0.0012 27.1 11.6 145 163-319 9-155 (160)
255 PF10363 DUF2435: Protein of u 71.1 14 0.0003 27.7 5.5 68 126-194 6-73 (92)
256 smart00288 VHS Domain present 71.1 12 0.00026 30.1 5.6 75 164-238 37-113 (133)
257 smart00638 LPD_N Lipoprotein N 70.7 1.3E+02 0.0028 30.8 18.4 134 124-275 394-542 (574)
258 PF13251 DUF4042: Domain of un 70.6 67 0.0015 27.4 10.9 110 167-280 43-176 (182)
259 PF11865 DUF3385: Domain of un 69.5 37 0.0008 28.3 8.4 145 124-278 11-157 (160)
260 PF14726 RTTN_N: Rotatin, an a 68.8 42 0.00092 25.4 7.7 68 121-188 28-95 (98)
261 KOG4231 Intracellular membrane 68.3 3.9 8.5E-05 40.1 2.5 62 259-322 338-400 (763)
262 cd03568 VHS_STAM VHS domain fa 67.1 15 0.00032 30.1 5.4 72 123-194 37-111 (144)
263 cd03569 VHS_Hrs_Vps27p VHS dom 67.1 16 0.00035 29.8 5.6 75 163-238 40-116 (142)
264 smart00638 LPD_N Lipoprotein N 66.5 84 0.0018 32.2 12.0 91 124-232 443-541 (574)
265 PF04821 TIMELESS: Timeless pr 66.5 76 0.0016 28.9 10.5 124 200-324 35-211 (266)
266 cd03567 VHS_GGA VHS domain fam 66.5 20 0.00042 29.2 5.9 72 164-235 38-115 (139)
267 cd03565 VHS_Tom1 VHS domain fa 64.2 52 0.0011 26.8 8.1 73 250-322 39-116 (141)
268 KOG2062 26S proteasome regulat 63.6 1.2E+02 0.0025 31.9 11.6 97 205-319 554-651 (929)
269 PF11864 DUF3384: Domain of un 63.2 1.7E+02 0.0036 29.2 18.8 106 208-320 216-329 (464)
270 KOG2199 Signal transducing ada 63.0 38 0.00082 32.4 7.7 73 249-321 45-118 (462)
271 PF14225 MOR2-PAG1_C: Cell mor 61.1 1.3E+02 0.0029 27.4 17.5 154 205-365 60-256 (262)
272 PF14500 MMS19_N: Dos2-interac 60.6 1.3E+02 0.0029 27.3 16.8 212 46-279 3-238 (262)
273 KOG1243 Protein kinase [Genera 60.5 1.9E+02 0.0041 30.1 12.6 70 247-320 328-397 (690)
274 PF00790 VHS: VHS domain; Int 60.4 19 0.00041 29.2 4.9 73 164-236 42-118 (140)
275 PF10521 DUF2454: Protein of u 59.6 73 0.0016 29.3 9.1 74 163-236 118-203 (282)
276 COG5098 Chromosome condensatio 58.0 40 0.00087 34.8 7.3 149 164-319 240-413 (1128)
277 KOG1992 Nuclear export recepto 57.1 2.7E+02 0.0058 29.7 18.7 69 24-92 343-413 (960)
278 PF08216 CTNNBL: Catenin-beta- 56.5 66 0.0014 24.8 6.8 43 98-141 63-105 (108)
279 KOG2062 26S proteasome regulat 56.1 58 0.0013 33.9 8.1 50 55-111 568-619 (929)
280 KOG2005 26S proteasome regulat 55.4 2.6E+02 0.0057 29.1 13.2 72 41-112 47-127 (878)
281 PF14666 RICTOR_M: Rapamycin-i 54.4 1.6E+02 0.0034 26.2 12.9 131 178-320 78-224 (226)
282 PF01365 RYDR_ITPR: RIH domain 53.3 31 0.00068 30.0 5.4 104 197-305 35-155 (207)
283 KOG1949 Uncharacterized conser 52.5 1.3E+02 0.0028 31.4 9.8 143 168-322 178-332 (1005)
284 PF12231 Rif1_N: Rap1-interact 51.9 2.3E+02 0.0049 27.3 13.8 134 177-319 59-202 (372)
285 PF08216 CTNNBL: Catenin-beta- 51.9 12 0.00027 28.8 2.2 41 225-266 64-104 (108)
286 PF04064 DUF384: Domain of unk 51.3 59 0.0013 22.0 5.2 49 273-323 2-51 (58)
287 PF06012 DUF908: Domain of Unk 50.9 51 0.0011 31.1 6.8 73 140-212 239-323 (329)
288 PF12830 Nipped-B_C: Sister ch 47.5 1.8E+02 0.0039 24.8 12.2 146 125-281 10-170 (187)
289 PF12726 SEN1_N: SEN1 N termin 47.2 3.8E+02 0.0082 28.5 13.9 106 127-235 445-552 (727)
290 PF11791 Aconitase_B_N: Aconit 46.3 1.3E+02 0.0029 24.7 7.4 100 40-152 20-123 (154)
291 PF06012 DUF908: Domain of Unk 46.1 99 0.0022 29.2 7.9 67 179-245 237-306 (329)
292 PF11864 DUF3384: Domain of un 45.6 3.2E+02 0.0069 27.2 16.5 102 84-193 215-330 (464)
293 PF04499 SAPS: SIT4 phosphatas 45.6 1.3E+02 0.0029 30.0 8.9 77 246-322 59-150 (475)
294 COG5116 RPN2 26S proteasome re 45.5 1.2E+02 0.0027 30.7 8.3 112 133-262 562-675 (926)
295 KOG2676 Uncharacterized conser 45.1 14 0.00031 34.7 1.9 62 268-330 375-439 (478)
296 PF08506 Cse1: Cse1; InterPro 44.7 3E+02 0.0064 26.5 11.4 129 56-188 225-370 (370)
297 PF14663 RasGEF_N_2: Rapamycin 44.5 1.5E+02 0.0032 23.1 7.7 42 38-80 4-45 (115)
298 PF10691 DUF2497: Protein of u 40.3 86 0.0019 22.3 4.9 26 352-377 37-62 (73)
299 KOG2229 Protein required for a 39.6 1.3E+02 0.0027 30.1 7.3 116 248-372 15-138 (616)
300 PF14225 MOR2-PAG1_C: Cell mor 39.3 3E+02 0.0065 25.1 17.5 161 139-319 78-252 (262)
301 PF14663 RasGEF_N_2: Rapamycin 39.1 94 0.002 24.2 5.5 39 250-290 9-47 (115)
302 KOG1087 Cytosolic sorting prot 38.6 85 0.0018 31.2 6.2 68 250-317 39-108 (470)
303 PF08389 Xpo1: Exportin 1-like 38.4 1.6E+02 0.0035 23.3 7.2 130 136-273 1-148 (148)
304 cd08050 TAF6 TATA Binding Prot 38.2 3.1E+02 0.0068 26.0 9.9 108 84-192 212-339 (343)
305 COG3827 Uncharacterized protei 38.0 51 0.0011 28.6 4.0 25 352-376 192-216 (231)
306 PF10521 DUF2454: Protein of u 37.1 3.3E+02 0.0072 24.9 9.7 70 123-192 119-202 (282)
307 PF12830 Nipped-B_C: Sister ch 35.6 1E+02 0.0022 26.4 5.6 65 250-321 9-74 (187)
308 PF12726 SEN1_N: SEN1 N termin 35.3 1.4E+02 0.0031 31.7 7.8 62 263-324 495-556 (727)
309 KOG2073 SAP family cell cycle 34.8 4.2E+02 0.0092 28.6 10.9 58 247-304 188-251 (838)
310 cd03572 ENTH_epsin_related ENT 34.7 1.3E+02 0.0027 23.9 5.5 52 41-92 37-92 (122)
311 PLN03205 ATR interacting prote 32.7 2.7E+02 0.0058 27.0 8.2 109 208-320 326-445 (652)
312 KOG1848 Uncharacterized conser 31.6 2.3E+02 0.005 32.1 8.4 138 98-240 813-962 (1610)
313 PLN03205 ATR interacting prote 31.5 2.3E+02 0.005 27.4 7.5 110 125-235 325-445 (652)
314 PF06685 DUF1186: Protein of u 31.3 4E+02 0.0086 24.1 10.4 38 84-121 113-153 (249)
315 PF06685 DUF1186: Protein of u 31.2 4E+02 0.0086 24.1 12.3 107 161-278 70-183 (249)
316 KOG0392 SNF2 family DNA-depend 30.9 8.4E+02 0.018 27.8 12.7 231 41-280 76-327 (1549)
317 PLN03076 ARF guanine nucleotid 30.6 1E+03 0.022 28.5 18.0 199 97-302 1153-1403(1780)
318 PF11791 Aconitase_B_N: Aconit 30.0 1.9E+02 0.0041 23.9 5.9 30 165-194 95-124 (154)
319 PF04499 SAPS: SIT4 phosphatas 29.9 4.1E+02 0.0089 26.6 9.5 77 117-193 56-148 (475)
320 KOG1566 Conserved protein Mo25 29.7 4.8E+02 0.01 24.5 23.1 202 118-324 74-289 (342)
321 cd08050 TAF6 TATA Binding Prot 29.6 1.5E+02 0.0033 28.1 6.3 110 125-234 212-338 (343)
322 KOG1949 Uncharacterized conser 29.4 7E+02 0.015 26.4 12.3 143 128-277 179-330 (1005)
323 PF01603 B56: Protein phosphat 28.9 2.7E+02 0.0058 27.2 8.0 75 36-110 127-204 (409)
324 KOG2676 Uncharacterized conser 28.2 63 0.0014 30.6 3.2 61 101-161 376-439 (478)
325 PF01365 RYDR_ITPR: RIH domain 27.8 1.4E+02 0.003 25.9 5.3 98 37-135 38-154 (207)
326 KOG0392 SNF2 family DNA-depend 26.7 2.7E+02 0.0059 31.3 7.9 106 43-151 817-924 (1549)
327 PF13251 DUF4042: Domain of un 26.5 4.1E+02 0.0089 22.7 9.7 103 49-154 47-176 (182)
328 PF14666 RICTOR_M: Rapamycin-i 26.5 4.6E+02 0.0099 23.3 10.4 126 140-278 81-225 (226)
329 cd03565 VHS_Tom1 VHS domain fa 26.5 2.6E+02 0.0056 22.7 6.3 74 164-237 38-116 (141)
330 PF07923 N1221: N1221-like pro 26.4 1.3E+02 0.0028 27.8 5.2 56 162-217 58-128 (293)
331 KOG0413 Uncharacterized conser 26.2 4.9E+02 0.011 28.6 9.4 91 55-154 944-1037(1529)
332 PF09324 DUF1981: Domain of un 25.5 1.4E+02 0.0031 21.8 4.3 65 120-188 14-83 (86)
333 PF03130 HEAT_PBS: PBS lyase H 25.3 61 0.0013 17.8 1.7 14 58-71 1-14 (27)
334 PF12463 DUF3689: Protein of u 24.5 5.8E+02 0.013 23.8 12.2 78 203-280 93-175 (303)
335 smart00567 EZ_HEAT E-Z type HE 23.6 1.2E+02 0.0027 16.7 2.9 14 57-70 2-15 (30)
336 PF12765 Cohesin_HEAT: HEAT re 23.3 1.3E+02 0.0029 18.6 3.2 29 37-65 13-41 (42)
337 KOG4231 Intracellular membrane 23.1 1.4E+02 0.0031 29.8 4.7 63 131-193 336-399 (763)
338 KOG2029 Uncharacterized conser 22.4 3.4E+02 0.0075 27.9 7.2 75 194-270 280-354 (697)
339 PF12397 U3snoRNP10: U3 small 21.7 3.8E+02 0.0083 20.7 11.0 70 42-112 6-76 (121)
340 PF12783 Sec7_N: Guanine nucle 21.6 4.6E+02 0.01 21.6 8.5 82 162-245 71-155 (168)
341 PF07571 DUF1546: Protein of u 21.4 3E+02 0.0064 20.4 5.3 57 53-109 17-77 (92)
342 KOG2038 CAATT-binding transcri 21.3 1E+03 0.022 25.5 10.8 181 84-276 214-407 (988)
343 PF07571 DUF1546: Protein of u 21.2 1.5E+02 0.0032 22.0 3.7 59 176-234 18-76 (92)
344 cd00197 VHS_ENTH_ANTH VHS, ENT 21.2 3.4E+02 0.0074 20.7 5.9 69 165-233 38-112 (115)
345 PF12783 Sec7_N: Guanine nucle 21.1 2.2E+02 0.0048 23.6 5.2 78 119-198 69-151 (168)
346 PF13001 Ecm29: Proteasome sta 21.1 8.6E+02 0.019 24.5 11.6 180 85-279 241-444 (501)
347 KOG1087 Cytosolic sorting prot 20.9 1.7E+02 0.0037 29.1 4.9 69 164-232 38-108 (470)
348 COG5116 RPN2 26S proteasome re 20.6 9.4E+02 0.02 24.8 11.0 98 204-319 550-648 (926)
349 KOG1791 Uncharacterized conser 20.4 1.4E+03 0.03 26.7 14.2 118 159-276 1535-1658(1758)
350 PLN03076 ARF guanine nucleotid 20.4 1E+03 0.022 28.4 11.4 155 157-319 1126-1297(1780)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=271.15 Aligned_cols=325 Identities=19% Similarity=0.237 Sum_probs=276.9
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC-CChhHHHHHHHHHHhhhcChh
Q 015988 38 SSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA-PDSDHESALLALLNLAVKDEK 114 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~ 114 (397)
+.+.++++.|+.+|...+.++|..+++.|+.++.++.+.+..+.+. ++.|+++|++ ....++.|++.|.+++.++++
T Consensus 400 L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 400 LNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred HHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 3456788899999999999999999999999999887888877764 9999999998 334699999999999998889
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchh-hhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 115 NKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPF-ISASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~-i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
++..++++|++|+|+++|.+++..+++.|+++|+|++.++++... +.+.|+++.|+++|++++.+++..|+++|.||+.
T Consensus 480 nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 480 SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999997765555 4478999999999999999999999999999964
Q ss_pred CchhH-------------------------------------HH-HHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 194 HPDNL-------------------------------------SI-ILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 194 ~~~~~-------------------------------------~~-i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
..++. .. ....|+++.|+++++++ +..+++.|+++|.|++
T Consensus 560 ~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 560 TADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIF 637 (2102)
T ss_pred ccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHh
Confidence 32110 11 11368999999999986 3578899999999998
Q ss_pred CCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHH
Q 015988 236 GFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTL 315 (397)
Q Consensus 236 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~ 315 (397)
.+.......+...|+|++|+.+|.+++.+++..++++|.|++....++.+..+++.|+++.|++++.+.+..+.+.|+.+
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 76665433344899999999999999999999999999999986644556778899999999999999999999999999
Q ss_pred HHHhhcCCC-CCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHHhHH
Q 015988 316 LQLLRDSPY-PRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQVSME 367 (397)
Q Consensus 316 L~~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~~~~ 367 (397)
|.++...++ ..++..++++++++.-|. +|++++ +.|..+|..|++....
T Consensus 718 LanLl~~~e~~~ei~~~~~I~~Lv~lLr---~G~~~~k~~Aa~AL~~L~~~~~~ 768 (2102)
T PLN03200 718 LANLLSDPEVAAEALAEDIILPLTRVLR---EGTLEGKRNAARALAQLLKHFPV 768 (2102)
T ss_pred HHHHHcCchHHHHHHhcCcHHHHHHHHH---hCChHHHHHHHHHHHHHHhCCCh
Confidence 999998887 445667889999887664 677777 8899999888876553
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.5e-29 Score=236.77 Aligned_cols=321 Identities=19% Similarity=0.281 Sum_probs=272.9
Q ss_pred hhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhh
Q 015988 40 ASSAVHRALHLIQ-SDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPD-SDHESALLALLNLAVKDEKN 115 (397)
Q Consensus 40 ~~~~l~~lv~lL~-s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~ 115 (397)
..|.++.+|+.|. ..++.+|..|+|+|.++++++.+....+.++ ||.++.++.+++ .+++.|+|+|+|++.+++..
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 4599999999997 4568999999999999999887766666664 999999999944 47999999999999999999
Q ss_pred HHHHHHcCChHHHHHhhCCCCH-HHHHHHHHHHHHHhcCCCCchhhh-hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 116 KIKIVEAGALEPIISFLQSPDL-NLQEYAAAALLTLSASSVNKPFIS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
|..+.+.|++++|+.++...+. .....+.++|.||+........+. -...+|.|..++++.|+++...|+|+|.+|+.
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998765 678889999999998764434433 47789999999999999999999999999997
Q ss_pred C-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh-cCCHHHHHHHHH
Q 015988 194 H-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE-NGSLQAREHAVG 271 (397)
Q Consensus 194 ~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~a~~ 271 (397)
. ++.-+.+++.|+++.|+++|.... ..++..|++++.|++.+++.+.+.+.+.|+++.|..++. ++...++..|+|
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~--~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSS--PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCC--cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 6 556688889999999999999864 467789999999999999999998889999999999998 555679999999
Q ss_pred HHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC---CCcccCcCchHHHHHHhhccCccc
Q 015988 272 ALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY---PRSELQPDTLENIVCNIISQIDGD 348 (397)
Q Consensus 272 ~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~ 348 (397)
++.|++.++ .+..++++++|.+|.|+.++..+.-.+|+.|+|++.|++.+.. ....+..|.++++. .+....+..
T Consensus 345 ~iSNItAG~-~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plc-dlL~~~D~~ 422 (514)
T KOG0166|consen 345 TISNITAGN-QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLC-DLLTCPDVK 422 (514)
T ss_pred HHHHhhcCC-HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhh-hcccCCChH
Confidence 999999987 4677899999999999999999999999999999999976654 44566678777765 454322222
Q ss_pred hhhHHHHHHHHHHHHHh
Q 015988 349 EQSGKAKKMLAEMVQVS 365 (397)
Q Consensus 349 ~~~~~A~~~L~~l~~~~ 365 (397)
....+...|.+|.+..
T Consensus 423 -ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 423 -IILVALDGLENILKVG 438 (514)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 2477888888777754
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=4.8e-28 Score=261.14 Aligned_cols=323 Identities=19% Similarity=0.199 Sum_probs=269.6
Q ss_pred CccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCC-hhHHHHHHHHHHhhhcC
Q 015988 36 SSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPD-SDHESALLALLNLAVKD 112 (397)
Q Consensus 36 ~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~ 112 (397)
+.+.+.|+++.|+++|+++++..|..|++.|.+++.++++++..+.++ ||.|+++|++++ .+++.|+|+|.|++.++
T Consensus 440 ~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~ 519 (2102)
T PLN03200 440 EALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS 519 (2102)
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc
Confidence 445677899999999999999999999999999999888888888775 999999999843 47999999999999866
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCc-----------------------------------
Q 015988 113 EKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNK----------------------------------- 157 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~----------------------------------- 157 (397)
+..+..+.+.|++++|+++|++++.+.+..++++|.|++.+.+..
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 666777778999999999999999999999999999996422111
Q ss_pred ---hhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHH
Q 015988 158 ---PFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIES 233 (397)
Q Consensus 158 ---~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n 233 (397)
......|+++.|+++|++++..+++.|+++|.+++.. ++++..++..|++++++.++++.. .++++.+.++|.|
T Consensus 600 ~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~--~~v~keAA~AL~n 677 (2102)
T PLN03200 600 LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT--EAVATQSARALAA 677 (2102)
T ss_pred HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC--hHHHHHHHHHHHH
Confidence 0111468999999999999999999999999999985 667888999999999999999863 5678999999999
Q ss_pred hcCCcc--cchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHH
Q 015988 234 LVGFDE--GRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTK 311 (397)
Q Consensus 234 L~~~~~--~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~ 311 (397)
++.... ++..++ +.|+|++|+++|++++.++++.++.+|.|++..+ +++.++...|+++.|+++++++++..|++
T Consensus 678 L~~~~~~~q~~~~v-~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~--e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~ 754 (2102)
T PLN03200 678 LSRSIKENRKVSYA-AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP--EVAAEALAEDIILPLTRVLREGTLEGKRN 754 (2102)
T ss_pred HHhCCCHHHHHHHH-HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc--hHHHHHHhcCcHHHHHHHHHhCChHHHHH
Confidence 975433 334455 8999999999999999999999999999999986 78899999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCc-----ccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHH
Q 015988 312 ARTLLQLLRDSPYPRS-----ELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQV 364 (397)
Q Consensus 312 A~~~L~~l~~~~~~~~-----~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~ 364 (397)
|+++|..++......+ +...|.+.+++.-|. ..+..... ..|...|.++.+.
T Consensus 755 Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~-~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 755 AARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN-STDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHh-cCCcchhhHHHHHHHHHHHHhh
Confidence 9999998877654333 234578888775443 33443333 5688888888874
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-29 Score=223.62 Aligned_cols=321 Identities=21% Similarity=0.303 Sum_probs=278.5
Q ss_pred CccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCC-hhHHHHHHHHHHhhhcC
Q 015988 36 SSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPD-SDHESALLALLNLAVKD 112 (397)
Q Consensus 36 ~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~ 112 (397)
-.+++-++++.|+....++..++|..+..+|++++..+ .+|..+... +.++..+-++.+ .+|.++..+|.+++. .
T Consensus 120 ~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s 197 (550)
T KOG4224|consen 120 GLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-S 197 (550)
T ss_pred eEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc-cchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-h
Confidence 34567788999988888899999999999999999985 778777753 888888666644 379999999999998 7
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcC--CHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 113 EKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASG--AIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
.++|..++.+|++|.|++++++++.+++..+..++.|++.+..++..+++.+ .++.|+.++.++++.++-.|..+|+|
T Consensus 198 ~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 198 RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999998766 99999999999999999999999999
Q ss_pred hcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC-HHHHHHH
Q 015988 191 LSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS-LQAREHA 269 (397)
Q Consensus 191 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~a 269 (397)
|+.+.+....+++.|.+|.++++++++ ..+.+.+...++.|++..+-+...++ +.|++.+|+.+|..++ .+++-+|
T Consensus 278 lasdt~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisihplNe~lI~-dagfl~pLVrlL~~~dnEeiqchA 354 (550)
T KOG4224|consen 278 LASDTEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVRLLRAGDNEEIQCHA 354 (550)
T ss_pred hcccchhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhcccccCccccee-cccchhHHHHHHhcCCchhhhhhH
Confidence 999999999999999999999999875 45677888999999999999988888 9999999999999765 6799999
Q ss_pred HHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCccch
Q 015988 270 VGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDGDE 349 (397)
Q Consensus 270 ~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 349 (397)
+.+|+||+... +..+..|.+.|++|.++.++.++...+|+....++..++-+...+..+.+.++-+.+ +.|.-+.++
T Consensus 355 vstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iL--Ip~t~s~s~ 431 (550)
T KOG4224|consen 355 VSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPIL--IPWTGSESE 431 (550)
T ss_pred HHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCccee--ecccCccch
Confidence 99999999866 578999999999999999999999999999999999999888866666664444443 233334444
Q ss_pred hh-HHHHHHHHHHHHH
Q 015988 350 QS-GKAKKMLAEMVQV 364 (397)
Q Consensus 350 ~~-~~A~~~L~~l~~~ 364 (397)
.. ..|+..|.|++..
T Consensus 432 Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 432 EVRGNAAAALINLSSD 447 (550)
T ss_pred hhcccHHHHHHhhhhh
Confidence 44 6777777777653
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=2.9e-28 Score=216.29 Aligned_cols=323 Identities=19% Similarity=0.264 Sum_probs=267.2
Q ss_pred ccchhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC-CChhHHHHHHHHHHhhhcC
Q 015988 37 SSSASSAVHRALHLI-QSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA-PDSDHESALLALLNLAVKD 112 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL-~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~ 112 (397)
+..+.|.++.+++++ .......+.+|+|+|.+++++.......+.++ ||.++++|.+ ++.+++.++|+|+|++.++
T Consensus 109 ~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS 188 (526)
T COG5064 109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS 188 (526)
T ss_pred hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCc
Confidence 346899999999999 45677889999999999999875555555453 9999999999 4447999999999999999
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCCH--HHHHHHHHHHHHHhcCCCCch-hhhhcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 113 EKNKIKIVEAGALEPIISFLQSPDL--NLQEYAAAALLTLSASSVNKP-FISASGAIPLLVEILRYGSQQAKFDAVMALS 189 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~~~--~~~~~a~~~L~nLs~~~~~~~-~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~ 189 (397)
+.+|..+.+.|++++++.++.+... .+...+.++|.||+....-.. .-.-..++|.|.+++.+.++++...|+|+|.
T Consensus 189 ~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 189 EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 9999999999999999999987655 678899999999997442222 1122457999999999999999999999999
Q ss_pred hhcCCchhH-HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHH
Q 015988 190 NLSTHPDNL-SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREH 268 (397)
Q Consensus 190 nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~ 268 (397)
.|+..+..+ +.+++.|....|+++|.+. +..++..+++.+.|+..+.+.+.+++...|+++.+..+|.++...++..
T Consensus 269 YlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKE 346 (526)
T COG5064 269 YLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE 346 (526)
T ss_pred HhccCcHHHHHHHHhcCCcHHHHHHhcCc--cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhh
Confidence 999986544 7778899999999999884 4678899999999999999998888889999999999999988899999
Q ss_pred HHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC-----CCcccCcCchHHHHHHhhc
Q 015988 269 AVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY-----PRSELQPDTLENIVCNIIS 343 (397)
Q Consensus 269 a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~-----~~~~~~~~~~~~ll~~l~~ 343 (397)
|+|.+.|++.++. +.-+++++.+.+|.|++++..-.-.+++.|+|++.|..-... .+..+..|.+.+|. .+..
T Consensus 347 aCWTiSNITAGnt-eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc-~~L~ 424 (526)
T COG5064 347 ACWTISNITAGNT-EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC-DLLD 424 (526)
T ss_pred hheeecccccCCH-HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH-HHHh
Confidence 9999999999884 566789999999999999999889999999999998854433 33455566666654 5542
Q ss_pred cCccchhh-HHHHHHHHHHHHHh
Q 015988 344 QIDGDEQS-GKAKKMLAEMVQVS 365 (397)
Q Consensus 344 ~~~~~~~~-~~A~~~L~~l~~~~ 365 (397)
.. ..+. +.|...++++.+..
T Consensus 425 ~~--dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 425 VV--DNKIIEVALDAIENILKVG 445 (526)
T ss_pred cc--CccchhhhHHHHHHHHhhh
Confidence 11 2223 77788888877664
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=227.46 Aligned_cols=328 Identities=18% Similarity=0.228 Sum_probs=282.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhC--hHHHHHHHHh-HHHHHHhhcC--CChhHHHHHHHHHHhhhcChhhHHH
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTS--QRCRRQLAQA-VQPLVLMLRA--PDSDHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~--~~~~~~l~~~-v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
.+..+..+.++++..+..+...++.+.+.. |.....+..+ ||.+|..|+. +...+..|+|+|.|++.++.+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 678888999999999999999999998753 5566667667 9999999986 3346999999999999999888899
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC-CchhhhhcCCHHHHHHHHhcCCH-HHHHHHHHHHHhhcCCch
Q 015988 119 IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSV-NKPFISASGAIPLLVEILRYGSQ-QAKFDAVMALSNLSTHPD 196 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~L~~lL~~~~~-~~~~~a~~aL~nLs~~~~ 196 (397)
++++|++|.++.++.+++.++++.|+++|.|++.+.. .|..+...|++++|+.++...+. ....++.|+|.||+....
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999885 78888899999999999987765 788999999999998753
Q ss_pred hHHHHH-hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015988 197 NLSIIL-GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLM 275 (397)
Q Consensus 197 ~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 275 (397)
-...+. -..+++.|..++.+. +..+...|+++|.+|+.++....+++.+.|+++.|+.+|.+.++.++..|++++.|
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 222222 245789999999986 46788999999999998877777777799999999999999999999999999999
Q ss_pred HhccCchhhHHHHHHcCChHHHHHHhh-cCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCccchhh-
Q 015988 276 MCQSDRCKYREPILREGVIPGLLELTI-QGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDGDEQS- 351 (397)
Q Consensus 276 L~~~~~~~~r~~i~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~- 351 (397)
++.+++ ...+.++..|++|.|..++. +....+++.|+|++.|++.... .+.++..+.+|.++..|. .++-+.
T Consensus 306 IvtG~d-~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~---~~ef~~r 381 (514)
T KOG0166|consen 306 IVTGSD-EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ---TAEFDIR 381 (514)
T ss_pred eeeccH-HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh---ccchHHH
Confidence 999884 66778889999999999998 4566799999999999977643 778999999999987664 455556
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHhhh
Q 015988 352 GKAKKMLAEMVQVSMEQSLRHLQQRA 377 (397)
Q Consensus 352 ~~A~~~L~~l~~~~~~~~~~~~~~~~ 377 (397)
++|+.++.|+...+.+...+++++-+
T Consensus 382 KEAawaIsN~ts~g~~~qi~yLv~~g 407 (514)
T KOG0166|consen 382 KEAAWAISNLTSSGTPEQIKYLVEQG 407 (514)
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHcC
Confidence 88999999999999988888888765
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.9e-27 Score=210.80 Aligned_cols=286 Identities=22% Similarity=0.299 Sum_probs=259.0
Q ss_pred CCCCCccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHh
Q 015988 32 SFSSSSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNL 108 (397)
Q Consensus 32 ~~~~~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L 108 (397)
......+...|++.++.++-++.+..+|+.+..+|.++.... ++|+.+..+ +|.||+++++.+. +|..+..++.++
T Consensus 157 d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 157 DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI 235 (550)
T ss_pred ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh
Confidence 344566788899999999888999999999999999999865 777776654 9999999999333 599999999999
Q ss_pred hhcChhhHHHHHHcC--ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHH
Q 015988 109 AVKDEKNKIKIVEAG--ALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVM 186 (397)
Q Consensus 109 ~~~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~ 186 (397)
+. +..+|+.+++.+ .++.|+.+++.+++.++..|..+|.|++.+.+.+..+++.|.+|.++++|+++..+.......
T Consensus 236 aV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 236 AV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred hh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 99 788999999988 999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcC-CcccchhhhhccCcHHHHHHHHhcCCHHH
Q 015988 187 ALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG-FDEGRIVLTSEEGGVLAVVEVLENGSLQA 265 (397)
Q Consensus 187 aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v 265 (397)
+++|++..+-|...|++.|++.+||++|+.. ++..++-.|...|+||+. +..++..+. +.|+|+.+.+++..+...+
T Consensus 315 CIrnisihplNe~lI~dagfl~pLVrlL~~~-dnEeiqchAvstLrnLAasse~n~~~i~-esgAi~kl~eL~lD~pvsv 392 (550)
T KOG4224|consen 315 CIRNISIHPLNEVLIADAGFLRPLVRLLRAG-DNEEIQCHAVSTLRNLAASSEHNVSVIR-ESGAIPKLIELLLDGPVSV 392 (550)
T ss_pred HHhhcccccCcccceecccchhHHHHHHhcC-CchhhhhhHHHHHHHHhhhhhhhhHHHh-hcCchHHHHHHHhcCChhH
Confidence 9999999999999999999999999999986 456789999999999988 555666666 9999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 266 REHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
++..-.++..|+..+ ..|..+.+.|.++.|++.+.+.+.+++-+|+.+|-|++.+.
T Consensus 393 qseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 393 QSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 999999999999886 67999999999999999999999999999999999997654
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=1.7e-25 Score=198.75 Aligned_cols=316 Identities=18% Similarity=0.189 Sum_probs=267.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHHHHHh-HHHHHHhhcC--CChhHHHHHHHHHHhhhcChhhHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKT--SQRCRRQLAQA-VQPLVLMLRA--PDSDHESALLALLNLAVKDEKNKI 117 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~--~~~~~~~l~~~-v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~~~~~~~ 117 (397)
.++.+...|.++|-+.+..|..-++.+.+. +|.....+..+ ||.+|++++. ++..+..|+|+|.|++++....-.
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 568888889999999999999999998874 46777777777 9999999966 666899999999999997666566
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC-CchhhhhcCCHHHHHHHHhcCCH--HHHHHHHHHHHhhcCC
Q 015988 118 KIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSV-NKPFISASGAIPLLVEILRYGSQ--QAKFDAVMALSNLSTH 194 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~L~~lL~~~~~--~~~~~a~~aL~nLs~~ 194 (397)
.++++|++|.++.+|.+++.++++.++++|.|++.+.+ +|..+.+.|++++++.++.+... ....++.|+|.||++.
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 67799999999999999999999999999999999875 67788899999999999987654 7788999999999985
Q ss_pred ---chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHH
Q 015988 195 ---PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVG 271 (397)
Q Consensus 195 ---~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~ 271 (397)
+.+-..+.. .++.|.+|+.+. +..+...|+++|..|+..+..+..++.+.|..+.|+++|.+++..++..|++
T Consensus 232 knP~P~w~~isq--alpiL~KLiys~--D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 232 KNPPPDWSNISQ--ALPILAKLIYSR--DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred CCCCCchHHHHH--HHHHHHHHHhhc--CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 233344433 488999999885 4678899999999999988887777779999999999999999999999999
Q ss_pred HHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCccch
Q 015988 272 ALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDGDE 349 (397)
Q Consensus 272 ~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~ 349 (397)
.+.|+..+++ ...+.++..|+++.+..+|.+....+|+.|+|.+.|++.... .+.++....+|+|+..|. ...-
T Consensus 308 ~vGNIVTG~D-~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls---~ae~ 383 (526)
T COG5064 308 SVGNIVTGSD-DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLS---SAEY 383 (526)
T ss_pred hhcCeeecCc-cceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHH---HHHH
Confidence 9999999874 456677899999999999999888999999999999976543 778888899999997664 3333
Q ss_pred hh-HHHHHHHHHHHHHhH
Q 015988 350 QS-GKAKKMLAEMVQVSM 366 (397)
Q Consensus 350 ~~-~~A~~~L~~l~~~~~ 366 (397)
+. ++|+..+.|......
T Consensus 384 k~kKEACWAisNatsgg~ 401 (526)
T COG5064 384 KIKKEACWAISNATSGGL 401 (526)
T ss_pred HHHHHHHHHHHhhhcccc
Confidence 44 778888888766543
No 9
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.88 E-value=8.5e-21 Score=186.41 Aligned_cols=326 Identities=19% Similarity=0.201 Sum_probs=258.9
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC-CChhHHHHHHHHHHhhhcChh--
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA-PDSDHESALLALLNLAVKDEK-- 114 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~-- 114 (397)
....++..+.+|.+.++.+|..|+..|.++++.+.+.+..+.+. |+.||.+|.+ .+.++..|+++|+||..++..
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 44557889999999999999999999999999998999988884 9999999999 555799999999999987666
Q ss_pred hHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh---c-------C----CHH
Q 015988 115 NKIKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR---Y-------G----SQQ 179 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~---~-------~----~~~ 179 (397)
|+..|.+.++++.++++|+. .|.++++...++||||+..|..|..+... ++..|..-+- + + +.+
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 99999999999999999996 78999999999999999998887776544 4444444331 1 1 256
Q ss_pred HHHHHHHHHHhhcC-CchhHHHHHh-CCChHHHHHHhhh----cccChHHHHHHHHHHHHhcCCcc--------------
Q 015988 180 AKFDAVMALSNLST-HPDNLSIILG-TNPIPSIVDLLIF----CKKSSKTAEKCTSLIESLVGFDE-------------- 239 (397)
Q Consensus 180 ~~~~a~~aL~nLs~-~~~~~~~i~~-~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~nL~~~~~-------------- 239 (397)
+..++.++|+|++. ..+.++.+.+ .|.|+.|+..+++ ...+.+.+++|+.+|.||+-.-+
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 77899999999998 5788889988 7899999998874 23346788999999999964221
Q ss_pred -------------------cch-------------h--------hhhccCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhc
Q 015988 240 -------------------GRI-------------V--------LTSEEGGVLAVVEVLE-NGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 240 -------------------~~~-------------~--------~~~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~L~~ 278 (397)
.++ . .+ ...+|..-+.+|. +.++.+.|.++++|-|++.
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw-~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLW-HPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeee-cHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 000 0 00 1122333344444 4568899999999999988
Q ss_pred cCc---hhhHHHH-HHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCc---cchhh
Q 015988 279 SDR---CKYREPI-LREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQID---GDEQS 351 (397)
Q Consensus 279 ~~~---~~~r~~i-~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~ 351 (397)
... ..++..+ .++.+++.|+++++.+++.+.+.++.+|+|++.+...+..+...+++.++..|....+ -++..
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 653 3466666 5688999999999999999999999999999999999999999999999988853322 22333
Q ss_pred -HHHHHHHHHHHHHhHH
Q 015988 352 -GKAKKMLAEMVQVSME 367 (397)
Q Consensus 352 -~~A~~~L~~l~~~~~~ 367 (397)
..++..|.++++.++.
T Consensus 629 v~~vc~tl~niv~~~~~ 645 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVL 645 (717)
T ss_pred HHHHHHhHHHHHHHhHH
Confidence 6778888888877665
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=7.6e-20 Score=183.67 Aligned_cols=251 Identities=20% Similarity=0.216 Sum_probs=207.1
Q ss_pred HHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHH
Q 015988 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQ 179 (397)
Q Consensus 100 ~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~ 179 (397)
.+...|.|++. ++.+...+.+.|.++.|+++|++++.++...++.+|.+|+...+||..+.+.|++++|.+++.+++.+
T Consensus 268 v~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 268 VAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 45567899998 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh
Q 015988 180 AKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE 259 (397)
Q Consensus 180 ~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~ 259 (397)
.+..++++|.|||.+++.+..+++.|++|.|+.++.++ .....++.+|+||+..++++..+. ..++++.++.++.
T Consensus 347 l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----~~~~val~iLy~LS~dd~~r~~f~-~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 347 LVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----NFREVALKILYNLSMDDEARSMFA-YTDCIPQLMQMLL 421 (708)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----chHHHHHHHHHHhccCHhhHHHHh-hcchHHHHHHHHH
Confidence 99999999999999999999999999999999999864 234679999999999999988776 7789999999876
Q ss_pred c-CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC-CCcccCcCchHHH
Q 015988 260 N-GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY-PRSELQPDTLENI 337 (397)
Q Consensus 260 ~-~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~~~~l 337 (397)
+ +++.+...++.++.|++.+. .+.+.+.+.|+++.|++......+. -...+++|++.++. .+..| .+-+.++
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~--rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f-~~~i~~L 495 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNK--RNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELF-VDFIGDL 495 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCH--HHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHH-HHHHHHH
Confidence 5 55667778899999999986 6778888888999999876554332 23469999998874 44443 3445555
Q ss_pred HHHhhccCccchhhHHHHHHHHHHHH
Q 015988 338 VCNIISQIDGDEQSGKAKKMLAEMVQ 363 (397)
Q Consensus 338 l~~l~~~~~~~~~~~~A~~~L~~l~~ 363 (397)
+.. ....+..+-.-++..+|+|+.-
T Consensus 496 ~~~-v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 496 AKI-VSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHH-hhcCCcHHHHHHHHHHHHhccc
Confidence 543 3333333333677778887753
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.86 E-value=2.3e-19 Score=180.24 Aligned_cols=301 Identities=17% Similarity=0.243 Sum_probs=246.9
Q ss_pred CccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCC-ChhHHHHHHHHHHhhhcC
Q 015988 36 SSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAP-DSDHESALLALLNLAVKD 112 (397)
Q Consensus 36 ~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~-~~~~~~a~~~L~~L~~~~ 112 (397)
..+...|.++.|++.|.+++.+....++.+|.+++-.. +++..+.+. |+.|+.++.+. ...+..+++.|.||+. +
T Consensus 284 ~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d 361 (708)
T PF05804_consen 284 LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-D 361 (708)
T ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-C
Confidence 34567899999999999999999999999999999875 788887774 99999999983 3368899999999999 7
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q 015988 113 EKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY-GSQQAKFDAVMALSNL 191 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~aL~nL 191 (397)
+.+|..+++.|.+|+|+.+|.+++ .+..++.+|.++|.++++|..+...++++.+++++-+ ++..+...+++.+.||
T Consensus 362 ~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNL 439 (708)
T PF05804_consen 362 PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINL 439 (708)
T ss_pred HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHH
Confidence 899999999999999999998654 5677999999999999999999999999999998765 4566777888999999
Q ss_pred cCCchhHHHHHhCCChHHHHHHhhhc---------------c---------------------cChHHHHHHHHHHHHhc
Q 015988 192 STHPDNLSIILGTNPIPSIVDLLIFC---------------K---------------------KSSKTAEKCTSLIESLV 235 (397)
Q Consensus 192 s~~~~~~~~i~~~g~i~~Lv~ll~~~---------------~---------------------~~~~~~~~a~~~L~nL~ 235 (397)
+.++.|.+.+.+.|+++.|++..... + ++..+..+++++|+||.
T Consensus 440 a~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 440 ALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred hcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 99999999999877887766432211 1 23456778999999998
Q ss_pred CCcccchhhhhccCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc--CCHHHHHH
Q 015988 236 GFDEGRIVLTSEEGGVLAVVEVLENG--SLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ--GTPKSQTK 311 (397)
Q Consensus 236 ~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~--~~~~~~~~ 311 (397)
..+.....++.+.+.++.|..+|..+ .+++...++..+..++..+ +....+.+.|.++.|+.++.. .+++..-.
T Consensus 520 ~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~--~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQ 597 (708)
T PF05804_consen 520 IPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP--ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQ 597 (708)
T ss_pred cCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH--HHHHHHHhCChHHHHHHHHHhhCchHHHHHH
Confidence 88878888887789999999999754 3678889999999999864 677788899999999999977 45677777
Q ss_pred HHHHHHHhhcCCCCC-cccCcCchHHHHHHhh
Q 015988 312 ARTLLQLLRDSPYPR-SELQPDTLENIVCNII 342 (397)
Q Consensus 312 A~~~L~~l~~~~~~~-~~~~~~~~~~ll~~l~ 342 (397)
.+.++..+-.++..+ .++....++..+-.+.
T Consensus 598 il~~f~~ll~h~~tr~~ll~~~~~~~ylidL~ 629 (708)
T PF05804_consen 598 ILYVFYQLLFHEETREVLLKETEIPAYLIDLM 629 (708)
T ss_pred HHHHHHHHHcChHHHHHHHhccchHHHHHHHh
Confidence 777777776666544 4556555665555555
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.6e-16 Score=141.76 Aligned_cols=292 Identities=15% Similarity=0.183 Sum_probs=228.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC--CCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHH
Q 015988 53 SDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA--PDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPII 129 (397)
Q Consensus 53 s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~--~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~ 129 (397)
+++..+..+++.+|..+....|+.+.. +++..++.+|.. .+. +......++..-|-.++.||+.+++.+..+.+.
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qpdl~da--~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~ 195 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQPDLFDA--EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELIL 195 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCcchhcc--ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Confidence 344555566666666665544333211 126777777765 222 355667788888888899999999999999999
Q ss_pred HhhC-CCCHHHHHHHHHHHHHHhcCCCCch----------hhhhcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCchh
Q 015988 130 SFLQ-SPDLNLQEYAAAALLTLSASSVNKP----------FISASGAIPLLVEILRYG-SQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 130 ~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~----------~i~~~g~i~~L~~lL~~~-~~~~~~~a~~aL~nLs~~~~~ 197 (397)
..|. .+...+.....++++.|..+|+.|. .|...|++..|++.+..+ +|.+....+.+|..|+..++.
T Consensus 196 ~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~ 275 (461)
T KOG4199|consen 196 QVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEI 275 (461)
T ss_pred HHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHH
Confidence 7665 4444577788899999999887764 455677889999999764 588889999999999999999
Q ss_pred HHHHHhCCChHHHHHHhhhcccC--hHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh--cCCHHHHHHHHHHH
Q 015988 198 LSIILGTNPIPSIVDLLIFCKKS--SKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE--NGSLQAREHAVGAL 273 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~~~--~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L 273 (397)
++.+.+.|+++.|++++.++.++ ..+.+.++..|..|+.+++++..++ +.|+.+.++.++. +.+|.+.+.++.++
T Consensus 276 C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV-~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i 354 (461)
T KOG4199|consen 276 CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIV-EKGGLDKIITLALRHSDDPLVIQEVMAII 354 (461)
T ss_pred HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHH-HhcChHHHHHHHHHcCCChHHHHHHHHHH
Confidence 99999999999999999885333 3467899999999999999999999 8899999999875 46799999999999
Q ss_pred HHHhccCchhhHHHHHHcCChHHHHHHhhcC--CHHHHHHHHHHHHHhh-cCCCCCcccCcCchHHHHHHh-hccCccc
Q 015988 274 LMMCQSDRCKYREPILREGVIPGLLELTIQG--TPKSQTKARTLLQLLR-DSPYPRSELQPDTLENIVCNI-ISQIDGD 348 (397)
Q Consensus 274 ~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~--~~~~~~~A~~~L~~l~-~~~~~~~~~~~~~~~~ll~~l-~~~~~~~ 348 (397)
+-||-.. ++.-..+++.|+-...++.++.. ...+|++|+++++|+. ++.+.++.+-..|+++++..- ..+.++.
T Consensus 355 ~~l~LR~-pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce 432 (461)
T KOG4199|consen 355 SILCLRS-PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCE 432 (461)
T ss_pred HHHHhcC-cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHH
Confidence 9999987 46777889999888888888663 4588999999999995 455577888888999988643 3334444
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=4.9e-16 Score=138.62 Aligned_cols=289 Identities=15% Similarity=0.152 Sum_probs=236.6
Q ss_pred CCCccchhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC--CChhHHHHHHHHHH
Q 015988 34 SSSSSSASSAVHRALHLIQ--SDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA--PDSDHESALLALLN 107 (397)
Q Consensus 34 ~~~~~~~~~~l~~lv~lL~--s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~--~~~~~~~a~~~L~~ 107 (397)
.+....+..++..++.+|. .++.++....+..+.+-+...+.+|..+.+. .+.+.+.|.. .+.+.+...++++.
T Consensus 137 ~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~ 216 (461)
T KOG4199|consen 137 KQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRA 216 (461)
T ss_pred CCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 3445577888888888884 5577888889999999999888999999986 5666667765 33347888999999
Q ss_pred hhhcChh---------hHHHHHHcCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCC
Q 015988 108 LAVKDEK---------NKIKIVEAGALEPIISFLQSP-DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGS 177 (397)
Q Consensus 108 L~~~~~~---------~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~ 177 (397)
+..+++- .-..|++.|+...|++.++-. ++++...++.+|..|+..++.+..+.+.|++..|++++.+.+
T Consensus 217 l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n 296 (461)
T KOG4199|consen 217 LLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSN 296 (461)
T ss_pred hcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhc
Confidence 9874322 245677888999999999854 678888899999999999999999999999999999998733
Q ss_pred ----HHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCC-cccchhhhhccCcHH
Q 015988 178 ----QQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGF-DEGRIVLTSEEGGVL 252 (397)
Q Consensus 178 ----~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~-~~~~~~~~~~~g~i~ 252 (397)
.+....++..|+.|+.++.++..|++.|+.+.++.++....+++.+++.++.++.-|+.. +++-..++ +.|+-.
T Consensus 297 ~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~i-e~G~a~ 375 (461)
T KOG4199|consen 297 EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAI-EAGAAD 375 (461)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHH-hcchHH
Confidence 345678999999999999999999999999999999988777888999999999988764 45555555 889888
Q ss_pred HHHHHHhcCC--HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCC
Q 015988 253 AVVEVLENGS--LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYP 325 (397)
Q Consensus 253 ~Lv~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 325 (397)
..++-++... ..++.++++.+.|+...+ .+.|..+... |++.|+..-...++.+...|..+|+-|..+.+.
T Consensus 376 ~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~v~l 448 (461)
T KOG4199|consen 376 LAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCDVYL 448 (461)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcchhh
Confidence 8888888533 679999999999999887 4667666655 488999988888999999999999988766553
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.75 E-value=2.2e-17 Score=169.08 Aligned_cols=260 Identities=19% Similarity=0.213 Sum_probs=213.9
Q ss_pred HHHHHHHHhhhChHHHHHHHHh-----HHHHHHhhcC------CC----hhHHHHHHHHHHhhhcChhhHHHHHH-cCCh
Q 015988 62 AAREIRRLTKTSQRCRRQLAQA-----VQPLVLMLRA------PD----SDHESALLALLNLAVKDEKNKIKIVE-AGAL 125 (397)
Q Consensus 62 a~~~L~~l~~~~~~~~~~l~~~-----v~~Lv~lL~~------~~----~~~~~a~~~L~~L~~~~~~~~~~i~~-~g~i 125 (397)
|+..|.++.. +++.|..+.+. |+-|+.+-.. ++ .++.++..+|.||++++..|+..++. .|++
T Consensus 318 A~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 318 ALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 3444444443 46888887763 4444444322 11 26889999999999999999999886 5999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHH-hcCCHHHHHHHHHHHHhhcCC-chhHHHH
Q 015988 126 EPIISFLQSPDLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEIL-RYGSQQAKFDAVMALSNLSTH-PDNLSII 201 (397)
Q Consensus 126 ~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~aL~nLs~~-~~~~~~i 201 (397)
+.+|..|.+..+++....+++|.||++..+ .|..+.+.|-+..|.... +..........+.+||||+.+ -+||..|
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 999999999999999999999999999664 466677899999988754 445556778899999999985 7899999
Q ss_pred Hh-CCChHHHHHHhhhc--ccChHHHHHHHHHHHHhcC---CcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015988 202 LG-TNPIPSIVDLLIFC--KKSSKTAEKCTSLIESLVG---FDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLM 275 (397)
Q Consensus 202 ~~-~g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~nL~~---~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 275 (397)
+. .|++..||.+|... ...-.|++.+.++|.|.+. ..+..+++..+.+++..|+..|++.+-.++.+++++|+|
T Consensus 477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN 556 (2195)
T KOG2122|consen 477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN 556 (2195)
T ss_pred hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence 88 89999999999765 3335789999999999865 345555677799999999999999999999999999999
Q ss_pred HhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 276 MCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 276 L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
|...+ ++.++.+|+.|+++.|..++++.+..+-+-++.+|+|+-.+.
T Consensus 557 LSAR~-p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 557 LSARS-PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhcCC-HHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 98887 578999999999999999999999999999999999997765
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=1.2e-16 Score=163.81 Aligned_cols=325 Identities=20% Similarity=0.219 Sum_probs=247.5
Q ss_pred cchhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHhhhChHHHHHHHHh--------HHHHHH----hhcC--------C
Q 015988 38 SSASSAVHRALHLIQSD---DPDLKLEAAREIRRLTKTSQRCRRQLAQA--------VQPLVL----MLRA--------P 94 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~---~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--------v~~Lv~----lL~~--------~ 94 (397)
+...|.++.|+.++.-. +.+.+..|-.+|.++....++.+..-++. |..-+. +|.. +
T Consensus 231 mR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~ 310 (2195)
T KOG2122|consen 231 MRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS 310 (2195)
T ss_pred HHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 34668899999999643 56889999999999998765443322221 221122 2221 2
Q ss_pred ChhHH-HHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCC------------CHHHHHHHHHHHHHHhcCC-CCchhh
Q 015988 95 DSDHE-SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSP------------DLNLQEYAAAALLTLSASS-VNKPFI 160 (397)
Q Consensus 95 ~~~~~-~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~------------~~~~~~~a~~~L~nLs~~~-~~~~~i 160 (397)
+..+. .|+..|..+++ +++.|..+.+-|+++++.+++.-. ...++.++.-+|.||++.+ .||..+
T Consensus 311 ~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L 389 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL 389 (2195)
T ss_pred cchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence 22455 67788999999 799999999999999999988621 2358899999999999977 578888
Q ss_pred h-hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcC-
Q 015988 161 S-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG- 236 (397)
Q Consensus 161 ~-~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~- 236 (397)
. ..|+++.++..|.+...++....+++|+||+.. ...++.+.+.|-+..|+...-.... ...++..+.+||||+.
T Consensus 390 Cs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k-EsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 390 CSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK-ESTLKAVLSALWNLSAH 468 (2195)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc-cchHHHHHHHHhhhhhc
Confidence 7 589999999999999989999999999999985 3346667778888888775543322 2346899999999955
Q ss_pred CcccchhhhhccCcHHHHHHHHhcC----CHHHHHHHHHHHHHHhccC--chhhHHHHHHcCChHHHHHHhhcCCHHHHH
Q 015988 237 FDEGRIVLTSEEGGVLAVVEVLENG----SLQAREHAVGALLMMCQSD--RCKYREPILREGVIPGLLELTIQGTPKSQT 310 (397)
Q Consensus 237 ~~~~~~~~~~~~g~i~~Lv~lL~~~----~~~v~~~a~~~L~~L~~~~--~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~ 310 (397)
+.+|+..|..-.|++..|+.+|... ...+.+.+-++|.|++..- .+.+|+.+.+.+.+..|+..|++.+-.+--
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVS 548 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVS 548 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEee
Confidence 6789999987789999999999743 3678899999999986532 147899999999999999999999999999
Q ss_pred HHHHHHHHhhc-CCCCCcccCcCchHHHHHHhhccCccchhhHHHHHHHHHHHHHh
Q 015988 311 KARTLLQLLRD-SPYPRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVS 365 (397)
Q Consensus 311 ~A~~~L~~l~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~~~ 365 (397)
++++.||||+. ++..|+.+-+.+....+..|.. ..-.-.++-+...|+|+..+-
T Consensus 549 NaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIh-SKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 549 NACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIH-SKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred cchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHh-hhhhhhhhhHHHHHHHHhcCC
Confidence 99999999964 5667777777666666667752 112222366777788887765
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.68 E-value=1.4e-15 Score=150.03 Aligned_cols=277 Identities=19% Similarity=0.213 Sum_probs=213.3
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC---CCchh
Q 015988 84 VQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS---VNKPF 159 (397)
Q Consensus 84 v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~---~~~~~ 159 (397)
+|..+.+|.+ .+.++-.|..-+.++|+++...|..+.+.|+|+.|+.+|.+.+.+++..|+++|.||.... +||-.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 7888899988 4456899999999999999999999999999999999999999999999999999998743 58889
Q ss_pred hhhcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcc--------c----ChHHHHH
Q 015988 160 ISASGAIPLLVEILRY-GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCK--------K----SSKTAEK 226 (397)
Q Consensus 160 i~~~g~i~~L~~lL~~-~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~--------~----~~~~~~~ 226 (397)
+.+.++++.++++|+. .|.++++...++|+||++.+..+..++.. .+..|.+-+-.+. + ...+...
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n 393 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRN 393 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeeh
Confidence 9999999999999986 89999999999999999997777777763 4666665443221 1 2456789
Q ss_pred HHHHHHHhcC-CcccchhhhhccCcHHHHHHHHhc------CCHHHHHHHHHHHHHHhccCchh----hH----------
Q 015988 227 CTSLIESLVG-FDEGRIVLTSEEGGVLAVVEVLEN------GSLQAREHAVGALLMMCQSDRCK----YR---------- 285 (397)
Q Consensus 227 a~~~L~nL~~-~~~~~~~~~~~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~L~~~~~~~----~r---------- 285 (397)
+.++|.|++. ..+.++++-...|.|..|+.++.+ .+...+|+++.+|.||+..-+.+ .+
T Consensus 394 ~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~ 473 (717)
T KOG1048|consen 394 VTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLP 473 (717)
T ss_pred hhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccc
Confidence 9999999966 788999998788999999999873 34667899999999997643200 00
Q ss_pred ----------------HH----------------------HHHcCChHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCC--
Q 015988 286 ----------------EP----------------------ILREGVIPGLLELT-IQGTPKSQTKARTLLQLLRDSPY-- 324 (397)
Q Consensus 286 ----------------~~----------------------i~~~g~v~~L~~ll-~~~~~~~~~~A~~~L~~l~~~~~-- 324 (397)
.. ++..-+|..-..++ .+.++.+.|+++++|.|++....
T Consensus 474 ~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~ 553 (717)
T KOG1048|consen 474 GVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTW 553 (717)
T ss_pred cCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcc
Confidence 00 11112233323334 34678999999999999976532
Q ss_pred ----CCcc-cCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHH
Q 015988 325 ----PRSE-LQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQV 364 (397)
Q Consensus 325 ----~~~~-~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~ 364 (397)
...+ .++.+++.++..|- .+.+.. +.++.+|+||...
T Consensus 554 ~~~~~~~v~~kekgl~~l~~ll~---~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 554 SEYMRGAVFRKEKGLPPLVELLR---NDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred hhHHHhhhhhhccCccHHHHHHh---cCCchHHHHHHHHHhhhccC
Confidence 2334 45688888886543 344444 8888899988764
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.67 E-value=4.3e-15 Score=133.22 Aligned_cols=198 Identities=21% Similarity=0.270 Sum_probs=175.1
Q ss_pred HHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchh
Q 015988 119 IVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
+.+.+.++.|+.+|+. .++.+++.++.++.|.+....++..+.+.|+++.+..+|.++++.++..|+++|.|++.+.+|
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 3567778999999985 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 198 LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
+..+-.+ ++.+++.+.+...+..++..++++|.||+..++.+..+. +.++.++.+|.+++..++.+++++|.||+
T Consensus 88 ~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 9887654 788888776665567889999999999999888877765 57999999999999999999999999999
Q ss_pred ccCchhhHHHHHHcCChHHHHHHhhcC-CHHHHHHHHHHHHHhhcCC
Q 015988 278 QSDRCKYREPILREGVIPGLLELTIQG-TPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 278 ~~~~~~~r~~i~~~g~v~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~ 323 (397)
.++ .....+..++++..++.++... +..+-..++.+..++..+-
T Consensus 163 ~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 163 ENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred cCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 986 6777888889999999999875 5688899999999996553
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.65 E-value=7.8e-14 Score=125.11 Aligned_cols=240 Identities=18% Similarity=0.232 Sum_probs=185.0
Q ss_pred CccchhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhc
Q 015988 36 SSSSASSAVHRALHLIQ-SDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVK 111 (397)
Q Consensus 36 ~~~~~~~~l~~lv~lL~-s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~ 111 (397)
+...+.+.+++|+.+|. +.+|.++..++.++.+.+.. +.++..+.+. ++.+..+|.+++. +++.|+++|.|++.
T Consensus 6 ~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~- 83 (254)
T PF04826_consen 6 KNILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV- 83 (254)
T ss_pred cCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-
Confidence 34578899999999998 56899999999999998776 4999999984 9999999999544 78999999999998
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 112 DEKNKIKIVEAGALEPIISFLQSP--DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALS 189 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~ 189 (397)
+.+++..+-. .++.+++.+.+. +.+++..++++|.||+..++....+. +.++.++.+|.+|+..++.+++++|.
T Consensus 84 ~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 84 NDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred ChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6778887744 577777765543 67899999999999999888777764 47999999999999999999999999
Q ss_pred hhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccc-hhhhhccCcHHHHHHHHhcCCHHHHHH
Q 015988 190 NLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGR-IVLTSEEGGVLAVVEVLENGSLQAREH 268 (397)
Q Consensus 190 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~~~~g~i~~Lv~lL~~~~~~v~~~ 268 (397)
|||.++.+.+.++..+++..++.++.... ...+...++..+.|+..+-... ........--..|..++.. . +.
T Consensus 160 nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~-~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e-~----~~ 233 (254)
T PF04826_consen 160 NLSENPDMTRELLSAQVLSSFLSLFNSSE-SKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGE-S----SQ 233 (254)
T ss_pred HhccCHHHHHHHHhccchhHHHHHHccCC-ccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHcc-H----HH
Confidence 99999999999999899999999998863 4577889999999996544332 2222233334455533332 2 22
Q ss_pred HHHHHHHHhccCchhhHHH
Q 015988 269 AVGALLMMCQSDRCKYREP 287 (397)
Q Consensus 269 a~~~L~~L~~~~~~~~r~~ 287 (397)
.+.-|..|..+++++.|.+
T Consensus 234 ~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 234 LAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred HHHHHHHHHcCCCHHHhhh
Confidence 3344444555555555543
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.64 E-value=8.1e-14 Score=128.30 Aligned_cols=323 Identities=13% Similarity=0.111 Sum_probs=242.6
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC----CC----hhHHHHHHHHHH
Q 015988 38 SSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA----PD----SDHESALLALLN 107 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~----~~----~~~~~a~~~L~~ 107 (397)
.++.+.++.|.+..+|++.++-.++.++|+++|+.+.++|..+.+. -..++..|+. .+ ....-+...|.|
T Consensus 83 ~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N 162 (604)
T KOG4500|consen 83 CIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN 162 (604)
T ss_pred hhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999884 5555555554 11 123335567888
Q ss_pred hhhcChhhHHHHHHcCChHHHHHhhCCC--C--------------------------------------------HHHHH
Q 015988 108 LAVKDEKNKIKIVEAGALEPIISFLQSP--D--------------------------------------------LNLQE 141 (397)
Q Consensus 108 L~~~~~~~~~~i~~~g~i~~L~~lL~~~--~--------------------------------------------~~~~~ 141 (397)
..-++++.+..+++.|+++.|...+.-+ + +++.+
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 8888999999999999999887766311 1 23345
Q ss_pred HHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc-CCH-------HHHHHHHHHHHhhcCCchhHHHHHhCC-ChHHHHH
Q 015988 142 YAAAALLTLSASSVNKPFISASGAIPLLVEILRY-GSQ-------QAKFDAVMALSNLSTHPDNLSIILGTN-PIPSIVD 212 (397)
Q Consensus 142 ~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~-~~~-------~~~~~a~~aL~nLs~~~~~~~~i~~~g-~i~~Lv~ 212 (397)
....+|...+.++..|-.+++.|.++.++.+++. .+. ..-..++....-|...++.-+.+...+ .++.++.
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 5566677777777778888889999999988875 221 222334444444555566655666544 6777777
Q ss_pred HhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHhccCchhhHHH
Q 015988 213 LLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN-----GSLQAREHAVGALLMMCQSDRCKYREP 287 (397)
Q Consensus 213 ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~L~~~~~~~~r~~ 287 (397)
-+.++ +..++..+.-+|+|+++.++.+..++ +.|.+..|++.|.. ++.+.+..++.+|.|+.--- -.+..
T Consensus 323 w~~S~--d~~l~t~g~LaigNfaR~D~~ci~~v-~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv--~nka~ 397 (604)
T KOG4500|consen 323 WFRSD--DSNLITMGSLAIGNFARRDDICIQLV-QKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV--SNKAH 397 (604)
T ss_pred HhcCC--chhHHHHHHHHHHhhhccchHHHHHH-HHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC--Cchhh
Confidence 77775 45677888999999999999999999 88999999999864 45788899999999998754 57899
Q ss_pred HHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC-CCcccCcCchHHHHHHh-hccCccchhh--HHHHHHHHHHHH
Q 015988 288 ILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY-PRSELQPDTLENIVCNI-ISQIDGDEQS--GKAKKMLAEMVQ 363 (397)
Q Consensus 288 i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~~~~ll~~l-~~~~~~~~~~--~~A~~~L~~l~~ 363 (397)
+..+|+.+.++..+...+|.++..-.+.++++.++.+ . ..+-+.-+.++.+| -|.....-.+ .+-.++|..+.+
T Consensus 398 ~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~--a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk 475 (604)
T KOG4500|consen 398 FAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI--ACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK 475 (604)
T ss_pred ccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH--HHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999988763 1 11223445555665 3544443332 777888888888
Q ss_pred HhHH
Q 015988 364 VSME 367 (397)
Q Consensus 364 ~~~~ 367 (397)
++..
T Consensus 476 Hs~~ 479 (604)
T KOG4500|consen 476 HSKY 479 (604)
T ss_pred hhHh
Confidence 8655
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.53 E-value=6.2e-12 Score=125.03 Aligned_cols=279 Identities=16% Similarity=0.184 Sum_probs=220.1
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~ 116 (397)
..++.+.+...|.++++.+|..++..|.++..++......+.+. ++.++..+.+++. +...|+.+|..++. ++...
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhH
Confidence 56778889999999999999999999999998876655555543 8899999988555 78899999999998 45666
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc
Q 015988 117 IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~ 195 (397)
..+++.+.+..|..++..++..++..+..++.+++... +....+.+.|.++.++..|+++|.-++.+++.+|..|+..+
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence 77888888999999999988889999999999998655 45667778999999999999999999999999999999999
Q ss_pred hhHHHHHhCCChHHHHHHhhhcccCh---H-HHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHH
Q 015988 196 DNLSIILGTNPIPSIVDLLIFCKKSS---K-TAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVG 271 (397)
Q Consensus 196 ~~~~~i~~~g~i~~Lv~ll~~~~~~~---~-~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~ 271 (397)
.+.+.+.+.|+++.|++++.....++ . ..-..+...++++....... .-.-...+..+.+++.+.++..+..|+.
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v-~~~~p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV-LELYPAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 99999999999999999997754333 1 22344466777766422211 1101234556667777889999999999
Q ss_pred HHHHHhccCchhhHHHH-HHc-CChHHHHH----HhhcCCHHHHHHHHHHHHHhhcC
Q 015988 272 ALLMMCQSDRCKYREPI-LRE-GVIPGLLE----LTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 272 ~L~~L~~~~~~~~r~~i-~~~-g~v~~L~~----ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
++..++... +++..+ ... +.++.+++ ...++...+|.++..++.++-..
T Consensus 313 tlg~igst~--~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 313 TLGQIGSTV--EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHhCCH--HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 999999875 788888 443 34455544 44557778999999999998433
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.46 E-value=6.6e-11 Score=109.35 Aligned_cols=285 Identities=14% Similarity=0.089 Sum_probs=207.3
Q ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHH-----h-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChH
Q 015988 54 DDPDLKLEAAREIRRLTKTSQRCRRQLAQ-----A-VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALE 126 (397)
Q Consensus 54 ~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-----~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~ 126 (397)
.+..++..+..++...+.+. .-|..+.+ + +..|.+...+++. +.+...++|+|+|.++.++|..+.+.||-.
T Consensus 54 ~~~tv~~~qssC~A~~sk~e-v~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNE-VERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred ccchhhhhhHHHHHHHhhhH-HHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 34456666677777777543 33433333 2 6666777666543 688999999999999999999999999988
Q ss_pred HHHHhhCC-------CCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcC----------------------
Q 015988 127 PIISFLQS-------PDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYG---------------------- 176 (397)
Q Consensus 127 ~L~~lL~~-------~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~---------------------- 176 (397)
.++.+|+. .+.+....+.+.|.|...+. +.+..+.+.|+++.|...+.-+
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 88888873 13467777888999988765 4677888889888666443211
Q ss_pred ------------------------CHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccC------hHHHHH
Q 015988 177 ------------------------SQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKS------SKTAEK 226 (397)
Q Consensus 177 ------------------------~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~------~~~~~~ 226 (397)
++...+-....|...+.++..+-.+.+.|.++.+.++++..+.. ......
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 12233344555666666677777778889899999988773221 223455
Q ss_pred HHHHHHHhcCCcccchhhhhccC-cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc--
Q 015988 227 CTSLIESLVGFDEGRIVLTSEEG-GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ-- 303 (397)
Q Consensus 227 a~~~L~nL~~~~~~~~~~~~~~g-~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~-- 303 (397)
++....-|..+++....+. ..+ .+..++.++.+.+......+.-++.|+++.+ ..+..+++.|.+..|++.+..
T Consensus 293 ~~el~vllltGDeSMq~L~-~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 293 IAELDVLLLTGDESMQKLH-ADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhHhhhhhcCchHHHHHh-cCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666677888877776 444 7889999999999999999999999999987 788899999999999998855
Q ss_pred ---CCHHHHHHHHHHHHHhhcCCCCC-cccCcCchHHHHHHhh
Q 015988 304 ---GTPKSQTKARTLLQLLRDSPYPR-SELQPDTLENIVCNII 342 (397)
Q Consensus 304 ---~~~~~~~~A~~~L~~l~~~~~~~-~~~~~~~~~~ll~~l~ 342 (397)
++.+.|.++.++|+++.-.-..+ ..+..|..+.++..+.
T Consensus 370 ~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk 412 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLK 412 (604)
T ss_pred CCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHH
Confidence 66788888999999998765544 4555566666665553
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.41 E-value=1.3e-10 Score=115.75 Aligned_cols=311 Identities=16% Similarity=0.139 Sum_probs=231.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHHHHcCCh
Q 015988 47 ALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKIVEAGAL 125 (397)
Q Consensus 47 lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i 125 (397)
+...|.+.+.+....++..|..+.... .....+.+..+.|...|.+++ .++..+++.|.++..+++.....+.+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 556676666666677778888887653 333334444888888998844 378999999999998766666777789999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhC
Q 015988 126 EPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGT 204 (397)
Q Consensus 126 ~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~ 204 (397)
+.++.++.+++.++...|..+|.+++.+......+...+.+..|..++..++..+|..+..++.+++.. ++....+.+.
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~s 201 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNS 201 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 999999999999999999999999998887777788888899999999888889999999999999875 5566777779
Q ss_pred CChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC--H---H-HHHHHHHHHHHHhc
Q 015988 205 NPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS--L---Q-AREHAVGALLMMCQ 278 (397)
Q Consensus 205 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~---~-v~~~a~~~L~~L~~ 278 (397)
|+++.++..+.++ +.-++..++.+|..|+..+.+...+. +.|+++.|..++...+ | . ..-..+....+++.
T Consensus 202 gll~~ll~eL~~d--DiLvqlnalell~~La~~~~g~~yL~-~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 202 GLLDLLLKELDSD--DILVQLNALELLSELAETPHGLQYLE-QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred cHHHHHHHHhcCc--cHHHHHHHHHHHHHHHcChhHHHHHH-hCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 9999999999883 56788899999999999999988887 8899999999997532 3 1 22334466677776
Q ss_pred cCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCccc-C--cCchHHHHHHhhcc-Cccchhh-HH
Q 015988 279 SDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSEL-Q--PDTLENIVCNIISQ-IDGDEQS-GK 353 (397)
Q Consensus 279 ~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~-~--~~~~~~ll~~l~~~-~~~~~~~-~~ 353 (397)
..+...... -...+..|..++.+.++..+..|..++..++.+......+ . .+.+...+..+... .+++... -+
T Consensus 279 ~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r 356 (503)
T PF10508_consen 279 VSPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLR 356 (503)
T ss_pred cChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHH
Confidence 432222111 1345566667777889999999999999998776655544 2 23555555555322 2232222 55
Q ss_pred HHHHHHHHHH
Q 015988 354 AKKMLAEMVQ 363 (397)
Q Consensus 354 A~~~L~~l~~ 363 (397)
+...|.++..
T Consensus 357 ~l~al~~il~ 366 (503)
T PF10508_consen 357 ALHALASILT 366 (503)
T ss_pred HHHHHHHHHh
Confidence 6666666643
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.3e-10 Score=106.11 Aligned_cols=240 Identities=19% Similarity=0.162 Sum_probs=174.5
Q ss_pred HHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHH
Q 015988 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQ 179 (397)
Q Consensus 100 ~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~ 179 (397)
.|+..|.|++. +...-..+...+.+.-|++.|...+.++.......|..|+..++||..+.+.|.++.|++++....++
T Consensus 282 va~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~d 360 (791)
T KOG1222|consen 282 VAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPD 360 (791)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHH
Confidence 45667888887 55666677788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChH-------------------------------------
Q 015988 180 AKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSK------------------------------------- 222 (397)
Q Consensus 180 ~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~------------------------------------- 222 (397)
.+...+..|.||+.+...+..++..|.+|.|+.++.++....-
T Consensus 361 L~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~ 440 (791)
T KOG1222|consen 361 LRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGS 440 (791)
T ss_pred HHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999877532110
Q ss_pred --------------------------------------------------------------------------------
Q 015988 223 -------------------------------------------------------------------------------- 222 (397)
Q Consensus 223 -------------------------------------------------------------------------------- 222 (397)
T Consensus 441 ~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~ 520 (791)
T KOG1222|consen 441 EVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSES 520 (791)
T ss_pred eecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHH
Confidence
Q ss_pred HHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHH
Q 015988 223 TAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENG--SLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLEL 300 (397)
Q Consensus 223 ~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~l 300 (397)
...+|+++|+||...+-....++++...||-+-..|..+ ..+.+-..+-.+.-++... .+...+..+|+++.|+++
T Consensus 521 F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~--~cA~Lla~a~~i~tlieL 598 (791)
T KOG1222|consen 521 FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL--DCARLLAPAKLIDTLIEL 598 (791)
T ss_pred HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh--HHHHHhCccccHHHHHHH
Confidence 223566666666666666666666666777666666543 2455566666666666543 344444568999999999
Q ss_pred hhcC--CHHHHHHHHHH-HHHhhcCCCCCcccCcCchHHHHHHhh
Q 015988 301 TIQG--TPKSQTKARTL-LQLLRDSPYPRSELQPDTLENIVCNII 342 (397)
Q Consensus 301 l~~~--~~~~~~~A~~~-L~~l~~~~~~~~~~~~~~~~~ll~~l~ 342 (397)
+... +++.--....+ ++.+.+....+-.+.+...+..+-+|.
T Consensus 599 L~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLM 643 (791)
T KOG1222|consen 599 LQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLM 643 (791)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 9762 33333333333 333344333444555555555544443
No 24
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.37 E-value=1.6e-10 Score=110.41 Aligned_cols=274 Identities=13% Similarity=0.081 Sum_probs=200.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-HHHh-HHHHHHhhcCC--ChhHHHHHHHHHHhhhcChhhHHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQ-LAQA-VQPLVLMLRAP--DSDHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~-l~~~-v~~Lv~lL~~~--~~~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
....++.+|..++.-++..|+..|..+....+..... .... +..|...|+++ ...+..++.+|..+.+ .+.+|..
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~ 180 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFA 180 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHH
Confidence 3456777888899999999999999998754332111 1111 45666677652 2247778899999988 6789999
Q ss_pred HHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCc
Q 015988 119 IVEAGALEPIISFLQSP--DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG-SQQAKFDAVMALSNLSTHP 195 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~aL~nLs~~~ 195 (397)
+.+.++++.|+.+|+.. +.+++-.++-++|-|+.+++....+...+.++.|+++++.. ..++..-++.+|.||...+
T Consensus 181 f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 181 FVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 99999999999999863 56889999999999999888767777789999999999864 5778888999999998743
Q ss_pred -------hhHHHHHhCCChHHHHHHhhhcccChHHHHHH-------HHHHHHhcCCcc----------------------
Q 015988 196 -------DNLSIILGTNPIPSIVDLLIFCKKSSKTAEKC-------TSLIESLVGFDE---------------------- 239 (397)
Q Consensus 196 -------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a-------~~~L~nL~~~~~---------------------- 239 (397)
.....++..|+++.+-.+......++++.+.. -.-+..++..++
T Consensus 261 ~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW 340 (429)
T cd00256 261 VDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFW 340 (429)
T ss_pred cccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHH
Confidence 23355666776665555554444445543322 112233333222
Q ss_pred --cchhhhhccC--cHHHHHHHHh-cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHH
Q 015988 240 --GRIVLTSEEG--GVLAVVEVLE-NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKART 314 (397)
Q Consensus 240 --~~~~~~~~~g--~i~~Lv~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~ 314 (397)
|...+- +.+ .+..|+++|+ +.++.+..-|+.=+..++++. +++|..+-+.|+=..+.+++.+.++.++..|..
T Consensus 341 ~EN~~kf~-~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 341 RENADRLN-EKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred HHHHHHHH-hcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 223333 222 3688999996 456777777888899999987 588988888999999999999999999999999
Q ss_pred HHHHh
Q 015988 315 LLQLL 319 (397)
Q Consensus 315 ~L~~l 319 (397)
+++.+
T Consensus 419 avQkl 423 (429)
T cd00256 419 AVQKL 423 (429)
T ss_pred HHHHH
Confidence 98876
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.33 E-value=3.1e-11 Score=96.35 Aligned_cols=118 Identities=25% Similarity=0.394 Sum_probs=105.7
Q ss_pred hhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCC
Q 015988 159 FISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGF 237 (397)
Q Consensus 159 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~ 237 (397)
.+.+.|+++.++++|.++++.++..++++|.+++.+ ++.+..+.+.|+++.+++++.++ +..++..++++|+||+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccC
Confidence 356889999999999999999999999999999997 77888888999999999999874 568999999999999988
Q ss_pred cccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 238 DEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 238 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
.......+.+.|+++.|++++..++..+++.++++|.+|+.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 86555554488999999999999999999999999999973
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.29 E-value=8.3e-11 Score=93.81 Aligned_cols=117 Identities=20% Similarity=0.264 Sum_probs=104.3
Q ss_pred HHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCC-cccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 200 IILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGF-DEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 200 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
.+.+.|+++.+++++.+.. ..++..++.+|.+++.. ++....++ +.|+++.++++|.++++.++..++++|.+++.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 4567899999999998763 67889999999999888 56666666 78999999999999999999999999999999
Q ss_pred cCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 279 SDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 279 ~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
.. +..+..+.+.|+++.|++++.+.+..+++.+.++|.+++
T Consensus 79 ~~-~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GP-EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred Cc-HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 76 467778888999999999999999999999999999885
No 27
>PRK09687 putative lyase; Provisional
Probab=99.20 E-value=2.7e-09 Score=97.94 Aligned_cols=234 Identities=13% Similarity=0.087 Sum_probs=116.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHc
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEA 122 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~ 122 (397)
++.|...|.+.+..+|..++..|..+... ..++.+..++++++. ++..|+++|..+.... .. ..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~---------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~ 89 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGGQ---------DVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QD 89 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcc---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hH
Confidence 45666777777777777777777655421 113445555555332 4666666777665421 11 11
Q ss_pred CChHHHHHh-hCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHH
Q 015988 123 GALEPIISF-LQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSII 201 (397)
Q Consensus 123 g~i~~L~~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i 201 (397)
..++.|..+ ++.+++.++..|+.+|.++....... ...+++.+...+.++++.++..++.+|..+.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------- 156 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------- 156 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC---------
Confidence 234555554 45556666666666666664322110 1123344444555555556665555554322
Q ss_pred HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccC-
Q 015988 202 LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSD- 280 (397)
Q Consensus 202 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~- 280 (397)
....++.|+.++.+. +..+...|...|..+... ...+++.|+.+|...+..++..|+.+|..+-...
T Consensus 157 -~~~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~a 224 (280)
T PRK09687 157 -DEAAIPLLINLLKDP--NGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRV 224 (280)
T ss_pred -CHHHHHHHHHHhcCC--CHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhH
Confidence 112445555555542 234555555555544110 1123444555555555555555555554321100
Q ss_pred ---------chhhHHHH----HH---cCChHHHHHHhh-cCCHHHHHHHHHHHH
Q 015988 281 ---------RCKYREPI----LR---EGVIPGLLELTI-QGTPKSQTKARTLLQ 317 (397)
Q Consensus 281 ---------~~~~r~~i----~~---~g~v~~L~~ll~-~~~~~~~~~A~~~L~ 317 (397)
++..+... .+ ..++|.|..++. +.++.++..|.++|.
T Consensus 225 v~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 225 LSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 00011111 11 125777777775 677788888877664
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.19 E-value=1.1e-09 Score=102.73 Aligned_cols=231 Identities=16% Similarity=0.133 Sum_probs=167.7
Q ss_pred HHHHHHhhcC---CChhHHHHHHHHHHhhhcChhhHHHHHH------cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC
Q 015988 84 VQPLVLMLRA---PDSDHESALLALLNLAVKDEKNKIKIVE------AGALEPIISFLQSPDLNLQEYAAAALLTLSASS 154 (397)
Q Consensus 84 v~~Lv~lL~~---~~~~~~~a~~~L~~L~~~~~~~~~~i~~------~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~ 154 (397)
+..++.+|+. .+.+....+..+..+..+++.....+.+ ...+.++++++..++..++..++..|..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 5556666654 2225788888899998877766666665 236789999999999999999999999998776
Q ss_pred CCchhhhhcCCHHHHHHHHhc----CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHh-----hhcccChHHHH
Q 015988 155 VNKPFISASGAIPLLVEILRY----GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLL-----IFCKKSSKTAE 225 (397)
Q Consensus 155 ~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll-----~~~~~~~~~~~ 225 (397)
+.+..-...+.++.++..+.+ .+.+.+..++.+|.+|...++.|..+.+.++++.+.+++ .+.....+++.
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 655444346677888888765 345677889999999999999999999999999999999 33334567899
Q ss_pred HHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc-
Q 015988 226 KCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENG-SLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ- 303 (397)
Q Consensus 226 ~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~- 303 (397)
.++-++|.|+..++....+. +.+.|+.|+++++.. ..++.+-++.+|.|+...+.......++..|+++.+-.+...
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~-~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk 295 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELN-KKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK 295 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred HHHHHHHHHhcCHHHHHHHh-ccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence 99999999999999999988 677999999999864 478899999999999988744477788888866666555544
Q ss_pred -CCHHHHHHHHHH
Q 015988 304 -GTPKSQTKARTL 315 (397)
Q Consensus 304 -~~~~~~~~A~~~ 315 (397)
.++++.+--..+
T Consensus 296 ~~Dedl~edl~~L 308 (312)
T PF03224_consen 296 WSDEDLTEDLEFL 308 (312)
T ss_dssp -SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 567766654433
No 29
>PRK09687 putative lyase; Provisional
Probab=99.18 E-value=7.1e-09 Score=95.19 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=148.5
Q ss_pred HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh
Q 015988 84 VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA 162 (397)
Q Consensus 84 v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 162 (397)
++.|...|.+++. ++..|++.|..+.. ...++.+..+++++++.++..++++|..|...+.. .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 7888899988554 78889999987753 23567788889999999999999999999754432 3
Q ss_pred cCCHHHHHHH-HhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccc
Q 015988 163 SGAIPLLVEI-LRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGR 241 (397)
Q Consensus 163 ~g~i~~L~~l-L~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~ 241 (397)
...++.|..+ ++++++.++..|+.+|.++....... ...+++.+...+.+. +..++..+..+|..+
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~------- 155 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDK--STNVRFAVAFALSVI------- 155 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCC--CHHHHHHHHHHHhcc-------
Confidence 3567888877 67789999999999999986532211 112344455555554 467888889998643
Q ss_pred hhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 242 IVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 242 ~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
.+..+++.|+.+|..+++.++..|+.+|..+...+ + .+++.|++.+.+.+..+|..|+..|..+..
T Consensus 156 ----~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~-~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 156 ----NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN-P---------DIREAFVAMLQDKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred ----CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC-H---------HHHHHHHHHhcCCChHHHHHHHHHHHccCC
Confidence 13458899999999999999999999999994332 1 357779999999999999999999977644
No 30
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.12 E-value=3.4e-09 Score=99.13 Aligned_cols=270 Identities=14% Similarity=0.151 Sum_probs=198.5
Q ss_pred cchhhhHHHHHHHhcCCCH--HHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcC--CChhHHHHHHHHHHhhhcC
Q 015988 38 SSASSAVHRALHLIQSDDP--DLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRA--PDSDHESALLALLNLAVKD 112 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~~~--~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~~ 112 (397)
+...|++..|++++.+.+. .+|.+|.+.|-.+... ++++.+... ...++.+-+. +...++..+..|.++.+++
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 3456889999999998865 4599999999888754 678777764 5555555554 2223778889999999999
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC--CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 113 EKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS--VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
++....+++.|++..++-..+..++.+..+++.+|.|++.+. ..+..+++..+-+.|+.+..+.+.-.+.+||.+...
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999876 468889999999999999888888999999999999
Q ss_pred hcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHH
Q 015988 191 LSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAV 270 (397)
Q Consensus 191 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~ 270 (397)
|+.+.+.-..+.+.|.+..+-.++.+.++. .. +.+.....+ -.....++.|+.+|++...+.+--++
T Consensus 334 lat~KE~E~~VrkS~TlaLVEPlva~~DP~-~F-----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~A 400 (832)
T KOG3678|consen 334 LATNKEVEREVRKSGTLALVEPLVASLDPG-RF-----------ARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGA 400 (832)
T ss_pred hhhhhhhhHHHhhccchhhhhhhhhccCcc-hh-----------hhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHH
Confidence 999888777777777666655566665332 21 111110000 00123478899999876655544333
Q ss_pred HHHHHHhccCchhhHHHHH-HcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 271 GALLMMCQSDRCKYREPIL-REGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~~i~-~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
--++.=+......++..+. +-|+|+.|.++..+.+...-.-|..+|..+...
T Consensus 401 F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 401 FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 3333322222234555554 589999999999877777777788899888654
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.3e-08 Score=93.95 Aligned_cols=286 Identities=14% Similarity=0.163 Sum_probs=205.4
Q ss_pred CCCCCccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-h-HHHHHHhhcCCChhHHHHHHHHHHhh
Q 015988 32 SFSSSSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ-A-VQPLVLMLRAPDSDHESALLALLNLA 109 (397)
Q Consensus 32 ~~~~~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~-v~~Lv~lL~~~~~~~~~a~~~L~~L~ 109 (397)
+++-..+...|.+++|++++...+++.+...+..+.+++..+ ..|..+.+ + +|.++.+|.+... +..|+..|..++
T Consensus 335 ~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~-~~iA~~~lYh~S 412 (791)
T KOG1222|consen 335 DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTK-HGIALNMLYHLS 412 (791)
T ss_pred ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCccc-chhhhhhhhhhc
Confidence 344456678899999999999999999999999999999876 56665555 4 9999999988444 566788888888
Q ss_pred hcChhhHHHHHHcCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHH--------------------
Q 015988 110 VKDEKNKIKIVEAGALEPIISFLQSP-DLNLQEYAAAALLTLSASSVNKPFISASGAIPL-------------------- 168 (397)
Q Consensus 110 ~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~-------------------- 168 (397)
- ++..+..+.-...|+.+.+.+-++ +.++-...+..-.|++.+..|...+.+..++..
T Consensus 413 ~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni 491 (791)
T KOG1222|consen 413 C-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI 491 (791)
T ss_pred c-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHh
Confidence 7 677888888888898888755433 333333334444566665555444444333332
Q ss_pred -----------------HHHHHhc-CCHHHHHHHHHHHHhhcCCchh-HHHHHhCCChHHHHHHhhhcccChHHHHHHHH
Q 015988 169 -----------------LVEILRY-GSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTS 229 (397)
Q Consensus 169 -----------------L~~lL~~-~~~~~~~~a~~aL~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~ 229 (397)
|...++. ++.+....++++|.||...+-. .+.+-+...+|-+-..|+.+....+++-...-
T Consensus 492 SqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi 571 (791)
T KOG1222|consen 492 SQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVI 571 (791)
T ss_pred hhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHH
Confidence 2222222 2355667899999999875444 45555678899888888776545566666666
Q ss_pred HHHHhcCCcccchhhhhccCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhccCchhhHHHHHH-cCChHHHHHHhhcCCH
Q 015988 230 LIESLVGFDEGRIVLTSEEGGVLAVVEVLEN--GSLQAREHAVGALLMMCQSDRCKYREPILR-EGVIPGLLELTIQGTP 306 (397)
Q Consensus 230 ~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~~~~~ 306 (397)
.+..++........+. ..|.|+.|+++|+. .+++..-..+.+...+..+. ..|..+++ ...-..|+.++++.+.
T Consensus 572 ~~GT~a~d~~cA~Lla-~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~ 648 (791)
T KOG1222|consen 572 ACGTMARDLDCARLLA-PAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNA 648 (791)
T ss_pred HhhhhhhhhHHHHHhC-ccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccH
Confidence 6666666665555554 88999999999985 45777778888888888873 45666665 5567789999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 015988 307 KSQTKARTLLQLLRDSP 323 (397)
Q Consensus 307 ~~~~~A~~~L~~l~~~~ 323 (397)
.+|+-.-.+|..++.+.
T Consensus 649 eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 649 EIRKVCDNALDIIAEHD 665 (791)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999888887776543
No 32
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.09 E-value=1.4e-08 Score=94.12 Aligned_cols=274 Identities=15% Similarity=0.063 Sum_probs=198.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-HHHh-HHHHHHhhcC---CChhHHHHHHHHHHhhhcChhhHHH
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQ-LAQA-VQPLVLMLRA---PDSDHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~-l~~~-v~~Lv~lL~~---~~~~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
-+..+.+|..+++-+...+.+.|..++......-.. -.+. ...|-..+++ ++. ...++++|..+.+ -++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~-~~~~~rcLQ~ll~-~~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDY-IQFAARCLQTLLR-VDEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCch-HHHHHHHHHHHhc-Ccchhhe
Confidence 446788888888888888999998888764332211 1111 4455555554 444 7778899999999 6789999
Q ss_pred HHHcCChHHHHHhhC--CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCc
Q 015988 119 IVEAGALEPIISFLQ--SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG-SQQAKFDAVMALSNLSTHP 195 (397)
Q Consensus 119 i~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~aL~nLs~~~ 195 (397)
++.++++..++..+. ..+.+++-..+-++|-|+.++...+.+...+.++.|..++++. ...+..-++.+++|+....
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999884 3477899999999999999888777777789999999999865 4677888999999998765
Q ss_pred -------hhHHHHHhCCChHHHHHHhhhcccChHHHH-------HHHHHHHHhcCCccc---------------------
Q 015988 196 -------DNLSIILGTNPIPSIVDLLIFCKKSSKTAE-------KCTSLIESLVGFDEG--------------------- 240 (397)
Q Consensus 196 -------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~-------~a~~~L~nL~~~~~~--------------------- 240 (397)
+.+..++..++.+.+-.|-....++.++.. .--.-...|+..++.
T Consensus 274 ~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 233455556666555555544444444432 222233344444321
Q ss_pred ---chhhhh-ccCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHH
Q 015988 241 ---RIVLTS-EEGGVLAVVEVLENGS-LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTL 315 (397)
Q Consensus 241 ---~~~~~~-~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~ 315 (397)
...+-. +...+..|+.+|+..+ |.+-.-|+.=+....+.. ++++..+.+.||=+.+.+++.+.+|.+|.+|..+
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y-P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY-PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC-chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 112210 1124788999998655 777777888888888877 5899999999999999999999999999999998
Q ss_pred HHHhh
Q 015988 316 LQLLR 320 (397)
Q Consensus 316 L~~l~ 320 (397)
+..|-
T Consensus 433 vQ~lm 437 (442)
T KOG2759|consen 433 VQKLM 437 (442)
T ss_pred HHHHH
Confidence 87763
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.06 E-value=5e-09 Score=98.29 Aligned_cols=222 Identities=20% Similarity=0.202 Sum_probs=158.3
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--------HHHHHHhhcCCCh-hHHHHHHHHHHhhhcC
Q 015988 44 VHRALHLIQ--SDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--------VQPLVLMLRAPDS-DHESALLALLNLAVKD 112 (397)
Q Consensus 44 l~~lv~lL~--s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--------v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~ 112 (397)
...++.+|+ +.++++....+..+..+...++.....+... ...++.++..+|. ++..|+..|..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 444555554 3678899999999999999887666665551 5778887777665 7888999999998754
Q ss_pred hhhHHHHHHcCChHHHHHhhCC----CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHH-----hc--CCHHHH
Q 015988 113 EKNKIKIVEAGALEPIISFLQS----PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEIL-----RY--GSQQAK 181 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL-----~~--~~~~~~ 181 (397)
+..... ...+.++.++.++.+ ++.+.+..++.+|.+|...++.|..+.+.++++.+..++ .+ .+...+
T Consensus 137 ~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 137 PKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred Cccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 443332 225566778877765 345667889999999999989999999999999999999 22 347889
Q ss_pred HHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc--cchhhhhccCcHHHHHHHHh
Q 015988 182 FDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE--GRIVLTSEEGGVLAVVEVLE 259 (397)
Q Consensus 182 ~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~~~~g~i~~Lv~lL~ 259 (397)
++++.++|-|+.+++....+...+.++.|+++++... ..++++-++.+|.||..... ....|+ ..|++ .+++.|.
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~~~~~mv-~~~~l-~~l~~L~ 292 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKSNIELMV-LCGLL-KTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHH-HH-HH-HHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHHHHHHHH-HccHH-HHHHHHh
Confidence 9999999999999999999999889999999999874 57999999999999987776 666666 55554 4444444
Q ss_pred c---CCHHHHHHH
Q 015988 260 N---GSLQAREHA 269 (397)
Q Consensus 260 ~---~~~~v~~~a 269 (397)
. .|+++.+-.
T Consensus 293 ~rk~~Dedl~edl 305 (312)
T PF03224_consen 293 ERKWSDEDLTEDL 305 (312)
T ss_dssp SS--SSHHHHHHH
T ss_pred cCCCCCHHHHHHH
Confidence 3 466665543
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.04 E-value=1.3e-07 Score=100.93 Aligned_cols=226 Identities=19% Similarity=0.130 Sum_probs=130.6
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
+...++.|++.|.++++.+|..|+..|..+... ..++.|+..|++++. ++..|+..|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~---------~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTPP---------GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcch---------hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence 556778899999999999999999999887521 236788888877443 68888888877643111
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc---
Q 015988 119 IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP--- 195 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~--- 195 (397)
..+.|...|+++++.++..++.+|..+.. +-...|+..|.++++.++..|+.+|..+...+
T Consensus 685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~ 748 (897)
T PRK13800 685 -----PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVA 748 (897)
T ss_pred -----chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHH
Confidence 12456666666677777776666665431 11233445555555555555555555431100
Q ss_pred --------hhHH----HHH-----hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHH
Q 015988 196 --------DNLS----IIL-----GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVL 258 (397)
Q Consensus 196 --------~~~~----~i~-----~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL 258 (397)
+.+. .+. ....++.|..++++. +..++..|+..|.++... ...+..++..|
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL 816 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDP--DPLVRAAALAALAELGCP----------PDDVAAATAAL 816 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCC--CHHHHHHHHHHHHhcCCc----------chhHHHHHHHh
Confidence 0000 000 011244555555443 245555556655543110 11223455556
Q ss_pred hcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 259 ENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
.++++.+|..|+.+|..+... ..++.|++++.+.+..+|..|+.+|..+
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 555666666666666554321 2357777777777778888887777665
No 35
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.00 E-value=2.8e-07 Score=88.39 Aligned_cols=317 Identities=13% Similarity=0.094 Sum_probs=206.2
Q ss_pred hhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChHHHHHHHHh-------HHHHHHhhcCCCh-hHHHHHHHHHHhhhc
Q 015988 41 SSAVHRALHLIQS-DDPDLKLEAAREIRRLTKTSQRCRRQLAQA-------VQPLVLMLRAPDS-DHESALLALLNLAVK 111 (397)
Q Consensus 41 ~~~l~~lv~lL~s-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-------v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~ 111 (397)
..++..++.+++. ..+++....+..+..+...++.....+.+. ...++.+|..+|. +...+...|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 4667778888864 456888888888999998876655554431 5667778877444 788899998888764
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC--CHHHHHHHHHHH
Q 015988 112 DEKNKIKIVEAGALEPIISFLQSP-DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG--SQQAKFDAVMAL 188 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~aL 188 (397)
+..+.......-....|...+++. +...+..++..|..|...++.|..+.+.++++.|+.+|+.. +...+++++-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 433211111111233455566554 46677788899999999999999998888999999999763 568999999999
Q ss_pred HhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-------cchhhhhccCcHHHHHHHHhc-
Q 015988 189 SNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-------GRIVLTSEEGGVLAVVEVLEN- 260 (397)
Q Consensus 189 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-------~~~~~~~~~g~i~~Lv~lL~~- 260 (397)
+-|+..++....+...+.|+.|+++++... ..++++-++.+|.||...+. ....++ +.|. +.++..|..
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv-~~~l-~~~l~~L~~r 288 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKKTAALQMV-QCKV-LKTLQSLEQR 288 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhhhHHHHHH-HcCh-HHHHHHHhcC
Confidence 999999887777777899999999999863 57899999999999977431 223444 4454 455555543
Q ss_pred --CCHHHHHHHHH-------HHHHHhccC--------------c--------hhhHHHHHHcC--ChHHHHHHhhc-CCH
Q 015988 261 --GSLQAREHAVG-------ALLMMCQSD--------------R--------CKYREPILREG--VIPGLLELTIQ-GTP 306 (397)
Q Consensus 261 --~~~~v~~~a~~-------~L~~L~~~~--------------~--------~~~r~~i~~~g--~v~~L~~ll~~-~~~ 306 (397)
.|+++.+..-. .+..+++.+ + .++-..+-+.+ .+..|++++.. .++
T Consensus 289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 34554433222 222233221 0 01113333322 57888888843 455
Q ss_pred HHHHHHHHHHHHhh-cCCCCCcccCcCchHHHHHHhhccCccchhhHHHHHHHHHH
Q 015988 307 KSQTKARTLLQLLR-DSPYPRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEM 361 (397)
Q Consensus 307 ~~~~~A~~~L~~l~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l 361 (397)
.+-.-|+.=+..+. ..|..+.++..-|.-..+..|..+.+.. -..+|...+..+
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~-Vr~eAL~avQkl 423 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPN-VRYEALLAVQKL 423 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHH-HHHHHHHHHHHH
Confidence 55555555455554 4466777776644444455666443322 226676666544
No 36
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.7e-07 Score=82.43 Aligned_cols=269 Identities=19% Similarity=0.216 Sum_probs=187.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH--h-HHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ--A-VQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~-v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
-+..+++++++.+|.+|..|+..+..++.. ..+..... . ++.+.+++...+. .+.|+.+|.|++. ++..+..+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq-~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQ-KEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHh-hHHHHHHH
Confidence 345789999999999999999999888865 33333333 2 8899999988554 6778899999998 67788877
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh---h---cCCHHHHHHHHhcC--CH-HHHHHHHHHHHh
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS---A---SGAIPLLVEILRYG--SQ-QAKFDAVMALSN 190 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~---~g~i~~L~~lL~~~--~~-~~~~~a~~aL~n 190 (397)
... .++.++..+.++.......++-+|.|++.+++....+. . ..++..++...-+. +. .-...-+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 776 77888888887766677778889999998775433332 1 13445555444322 21 223456668899
Q ss_pred hcCCchhHHHHHhCCCh--HHHHHHhhhcccChHH-HHHHHHHHHHhcCCcccchhhhhccC--cHHHHHH---------
Q 015988 191 LSTHPDNLSIILGTNPI--PSIVDLLIFCKKSSKT-AEKCTSLIESLVGFDEGRIVLTSEEG--GVLAVVE--------- 256 (397)
Q Consensus 191 Ls~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~-~~~a~~~L~nL~~~~~~~~~~~~~~g--~i~~Lv~--------- 256 (397)
|+.....|..+.+...+ +.++.+-. . +..+ .....+.|.|.|.....+..++. .+ .++.++-
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~-~--~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTS-E--DSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEELS 234 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccc-c--chhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccccC
Confidence 99998888888875422 22332222 2 2233 35678899999998888887773 22 2222221
Q ss_pred ------------HHh-----cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhh-cCCHHHHHHHHHHHHH
Q 015988 257 ------------VLE-----NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTI-QGTPKSQTKARTLLQL 318 (397)
Q Consensus 257 ------------lL~-----~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~ 318 (397)
+|- .+++.++..-+.+|.-||... .+|+.+++.|+-+.+-.+-. ..++.+++..-.+...
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~--~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR--AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh--HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 221 256899999999999999985 79999999887777666443 3677888888888888
Q ss_pred hhcC
Q 015988 319 LRDS 322 (397)
Q Consensus 319 l~~~ 322 (397)
+...
T Consensus 313 Lv~~ 316 (353)
T KOG2973|consen 313 LVRL 316 (353)
T ss_pred HHhc
Confidence 8654
No 37
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.5e-07 Score=91.82 Aligned_cols=291 Identities=14% Similarity=0.230 Sum_probs=215.5
Q ss_pred CccchhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHhhhChHHHHHHHH-hHHHHHHhhcC--CCh-hHHHHHHHHHHhhh
Q 015988 36 SSSSASSAVHRALHLIQSDD-PDLKLEAAREIRRLTKTSQRCRRQLAQ-AVQPLVLMLRA--PDS-DHESALLALLNLAV 110 (397)
Q Consensus 36 ~~~~~~~~l~~lv~lL~s~~-~~~~~~a~~~L~~l~~~~~~~~~~l~~-~v~~Lv~lL~~--~~~-~~~~a~~~L~~L~~ 110 (397)
+.......+++|+..+.+.+ .+.|+.|++.|-.+++ +.|..+.. ++++|++.|+. .|. ....++.++.++..
T Consensus 16 k~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 16 KQQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred ccccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 44456778999999987665 5899999999999885 56776665 49999999987 232 47788999999887
Q ss_pred cCh------hhH----------HHHH-HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC--CCchhhh-hcCCHHHHH
Q 015988 111 KDE------KNK----------IKIV-EAGALEPIISFLQSPDLNLQEYAAAALLTLSASS--VNKPFIS-ASGAIPLLV 170 (397)
Q Consensus 111 ~~~------~~~----------~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~-~~g~i~~L~ 170 (397)
.++ .-+ ..+. ..+.|..|+..+..-|..+|..+...+.++-..- +.+..+. .+-+|..|+
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 542 111 1222 3688999999999999999999999999987654 3455544 688999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh-CCChHHHHHHhhhcc--cChHHHHHHHHHHHHhcCCcccchhhhhc
Q 015988 171 EILRYGSQQAKFDAVMALSNLSTHPDNLSIILG-TNPIPSIVDLLIFCK--KSSKTAEKCTSLIESLVGFDEGRIVLTSE 247 (397)
Q Consensus 171 ~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 247 (397)
.+|.+....+|..++-.|..|+.+..+.+.++. .++++.|..++.... +..-+++.|+..|-||-.++.....++.+
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE 252 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE 252 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence 999999999999999999999998777666665 789999999998743 23467899999999998877666666668
Q ss_pred cCcHHHHHHHHhc---CCH--------H--HHHHHHHHHHHHhccCc-----hhhHHHHHHcCChHHHHHHhhcC--CHH
Q 015988 248 EGGVLAVVEVLEN---GSL--------Q--AREHAVGALLMMCQSDR-----CKYREPILREGVIPGLLELTIQG--TPK 307 (397)
Q Consensus 248 ~g~i~~Lv~lL~~---~~~--------~--v~~~a~~~L~~L~~~~~-----~~~r~~i~~~g~v~~L~~ll~~~--~~~ 307 (397)
.+.|+.|..+|.. ++. . -...++.++..+..-+. ..+++.+...+++..|..++.+. ...
T Consensus 253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~d 332 (970)
T KOG0946|consen 253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPAD 332 (970)
T ss_pred cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHh
Confidence 8999999988752 221 1 12345666666644221 23456777889999999988775 346
Q ss_pred HHHHHHHHHHHhhcCCC-CCccc
Q 015988 308 SQTKARTLLQLLRDSPY-PRSEL 329 (397)
Q Consensus 308 ~~~~A~~~L~~l~~~~~-~~~~~ 329 (397)
++..+.-++....++.. .+..|
T Consensus 333 IltesiitvAevVRgn~~nQ~~F 355 (970)
T KOG0946|consen 333 ILTESIITVAEVVRGNARNQDEF 355 (970)
T ss_pred HHHHHHHHHHHHHHhchHHHHHH
Confidence 67777666766655443 44333
No 38
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.90 E-value=1.6e-07 Score=91.59 Aligned_cols=146 Identities=14% Similarity=0.038 Sum_probs=115.4
Q ss_pred hcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-cchhhhhccCcH
Q 015988 174 RYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGV 251 (397)
Q Consensus 174 ~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i 251 (397)
...+...+..|+.++.+++.. ..-+..+-+..+++.|++++..+ ...+...++++|+|++..-. .+..++ ..|+|
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp--~~~i~~~~lgai~NlVmefs~~kskfl-~~ngI 463 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP--EIMIMGITLGAICNLVMEFSNLKSKFL-RNNGI 463 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc--chhHHHHHHHHHHHHHhhcccHHHHHH-HcCcH
Confidence 345677888888888888875 33343455577899999999664 56788999999999977554 555555 89999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 252 LAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 252 ~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
..+..++.+.++.++..++|+|.++..+.+++.+......=.-..+..+..+.+..+|+.+..+|+|+..+
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999987544444444433455667788889999999999999999766
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.89 E-value=4.4e-07 Score=96.88 Aligned_cols=230 Identities=19% Similarity=0.171 Sum_probs=151.4
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhc-------
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVK------- 111 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~------- 111 (397)
....++.|++.|+.+++.+|..|+.+|..+....+. .+.|...|++++. ++..|+..|..+...
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~ 721 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAA 721 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHH
Confidence 455678899999999999999999999877432110 1233344444222 344444444433211
Q ss_pred -----ChhhHHHHHH----cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHH
Q 015988 112 -----DEKNKIKIVE----AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKF 182 (397)
Q Consensus 112 -----~~~~~~~i~~----~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 182 (397)
++..|...+. .+..+.|..++.+++++++..++.+|..+... ....++.|..+++++++.+|.
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~ 793 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRA 793 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHH
Confidence 1111111111 12234455666666667777666666666431 123477888888888899999
Q ss_pred HHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC
Q 015988 183 DAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS 262 (397)
Q Consensus 183 ~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 262 (397)
.|+.+|.++.... ..+..+...+.++ +..++..|+.+|..+. ....++.|+.+|.+++
T Consensus 794 aA~~aLg~~g~~~---------~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~~L~D~~ 851 (897)
T PRK13800 794 AALAALAELGCPP---------DDVAAATAALRAS--AWQVRQGAARALAGAA-----------ADVAVPALVEALTDPH 851 (897)
T ss_pred HHHHHHHhcCCcc---------hhHHHHHHHhcCC--ChHHHHHHHHHHHhcc-----------ccchHHHHHHHhcCCC
Confidence 9998888774321 1235577777664 4578888999998542 3346799999999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 015988 263 LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQL 318 (397)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~ 318 (397)
..||..|+.+|..+.. + +. ..+.|...+.+.++.+|..|..+|..
T Consensus 852 ~~VR~~A~~aL~~~~~-~-~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 852 LDVRKAAVLALTRWPG-D-PA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHHhccCC-C-HH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999999722 2 11 46778899999999999999998863
No 40
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.88 E-value=5.1e-07 Score=88.16 Aligned_cols=326 Identities=15% Similarity=0.108 Sum_probs=202.0
Q ss_pred ccchhhhHHHHHHHhcCCC--HHHHHHHHHHHHHHhhhChHHHHHH-HHh-HHHHHHhhcCCC--hhHHHHHHHHHHhhh
Q 015988 37 SSSASSAVHRALHLIQSDD--PDLKLEAAREIRRLTKTSQRCRRQL-AQA-VQPLVLMLRAPD--SDHESALLALLNLAV 110 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~--~~~~~~a~~~L~~l~~~~~~~~~~l-~~~-v~~Lv~lL~~~~--~~~~~a~~~L~~L~~ 110 (397)
...+.|+++.+..+++..+ .+.+...+..+...+.+..+....+ ... .+.|.++|..+| .+.+..+++++++..
T Consensus 46 ~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ife 125 (678)
T KOG1293|consen 46 TNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFE 125 (678)
T ss_pred hhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHh
Confidence 4678899999999987654 4556667777777777664544444 444 899999999855 368889999999987
Q ss_pred cChhh--HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 111 KDEKN--KIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMAL 188 (397)
Q Consensus 111 ~~~~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL 188 (397)
-++.. .........+..+..++..+.......-+....+++...+.+..+...|..+.+..++..-+...|..|+..+
T Consensus 126 t~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~ 205 (678)
T KOG1293|consen 126 TSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCL 205 (678)
T ss_pred cccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHh
Confidence 44322 1122223344444444442444444444555556666666666667788887777666666677777777777
Q ss_pred H---hhcCCch-hH----HHHHhCCChH--HHHHHhhhcccChH------------------------------------
Q 015988 189 S---NLSTHPD-NL----SIILGTNPIP--SIVDLLIFCKKSSK------------------------------------ 222 (397)
Q Consensus 189 ~---nLs~~~~-~~----~~i~~~g~i~--~Lv~ll~~~~~~~~------------------------------------ 222 (397)
+ ++..+++ .. ......|+.+ .+.+++++++.+..
T Consensus 206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q 285 (678)
T KOG1293|consen 206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQ 285 (678)
T ss_pred hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHH
Confidence 7 5555432 11 1222234333 22233332211110
Q ss_pred --------------------------------------------------------------------------------
Q 015988 223 -------------------------------------------------------------------------------- 222 (397)
Q Consensus 223 -------------------------------------------------------------------------------- 222 (397)
T Consensus 286 ~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~ 365 (678)
T KOG1293|consen 286 YNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGL 365 (678)
T ss_pred HhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhc
Confidence
Q ss_pred ---------------------------HHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015988 223 ---------------------------TAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLM 275 (397)
Q Consensus 223 ---------------------------~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 275 (397)
...+|+.++.+++..-..-+.=.....+..+|++++..++..+...++++|+|
T Consensus 366 ~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~N 445 (678)
T KOG1293|consen 366 EISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICN 445 (678)
T ss_pred chhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHH
Confidence 11112222222211111000001145578889999988888899999999999
Q ss_pred HhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccC--cCchHHHHHHhhccCccchhh-H
Q 015988 276 MCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQ--PDTLENIVCNIISQIDGDEQS-G 352 (397)
Q Consensus 276 L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~--~~~~~~ll~~l~~~~~~~~~~-~ 352 (397)
+.-.- ...|..+.+.|+|..+.+++.+.++..+..+.|+|+++.-+......++ ...--..+..+. .+..... +
T Consensus 446 lVmef-s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~--nd~d~~Vqe 522 (678)
T KOG1293|consen 446 LVMEF-SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLI--NDPDWAVQE 522 (678)
T ss_pred HHhhc-ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHH--hCCCHHHHH
Confidence 98755 4789999999999999999999999999999999999987765222222 122122222232 2444344 9
Q ss_pred HHHHHHHHHHHHh
Q 015988 353 KAKKMLAEMVQVS 365 (397)
Q Consensus 353 ~A~~~L~~l~~~~ 365 (397)
.+.++|||+.-.+
T Consensus 523 q~fqllRNl~c~~ 535 (678)
T KOG1293|consen 523 QCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHHHhhcCc
Confidence 9999999997753
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.2e-07 Score=91.73 Aligned_cols=254 Identities=17% Similarity=0.178 Sum_probs=192.9
Q ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHHHhhh-ChHHHHHHH-Hh-HHHHHHhhcC-CCh-hHHHHHHHHHHhhhcChhh
Q 015988 42 SAVHRALHLIQSD-DPDLKLEAAREIRRLTKT-SQRCRRQLA-QA-VQPLVLMLRA-PDS-DHESALLALLNLAVKDEKN 115 (397)
Q Consensus 42 ~~l~~lv~lL~s~-~~~~~~~a~~~L~~l~~~-~~~~~~~l~-~~-v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~~~~~ 115 (397)
+-+.+|+..|... ++..|.+|+..|+.+..- +++.-..|. +. ||.|+.+|+. ... +...|+++|.+++.--|+.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3456677777655 888999999999888874 333333222 23 9999999998 222 5899999999999988999
Q ss_pred HHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 015988 116 KIKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~ 194 (397)
...++++++||.|++-|.. +-.++.+.++.+|-.++.. .-..+...|++-..+..|.==+..++..|+.+..|+|..
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987654 5568999999999999863 335677899999998888766788999999999999875
Q ss_pred --chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcC----CcccchhhhhccCcHHHHHHHHhcCC----HH
Q 015988 195 --PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG----FDEGRIVLTSEEGGVLAVVEVLENGS----LQ 264 (397)
Q Consensus 195 --~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~----~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~ 264 (397)
++.-..+++ .+|.|..+|+..+ .+.++.++.++..++. +++--.++. ..|.|.....+|.-.. ..
T Consensus 325 i~sd~f~~v~e--alPlL~~lLs~~D--~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 325 IRSDEFHFVME--ALPLLTPLLSYQD--KKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred CCCccchHHHH--HHHHHHHHHhhcc--chhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHHHhcCccccccc
Confidence 444455555 4899999998853 4667888777777744 333344555 7888999999886432 33
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc
Q 015988 265 AREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ 303 (397)
Q Consensus 265 v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~ 303 (397)
+....++.|..+|... +..+..+.+.++...|..++..
T Consensus 400 ~~~~vIrmls~msS~~-pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGS-PLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred chhHHHHHHHHHccCC-hHHHHHHHHhhHHHHHHHHHhc
Confidence 5566777888888876 4677788888988888888866
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.9e-07 Score=85.68 Aligned_cols=182 Identities=24% Similarity=0.283 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC-CchhhhhcCCHHHHHHHHhc
Q 015988 97 DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSV-NKPFISASGAIPLLVEILRY 175 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~L~~lL~~ 175 (397)
.++.|..-|..++. +-+|-..+...|++.+++..+.+.+..+|+.|++++...+.+.+ .+..+.+.|+++.|+..|.+
T Consensus 99 ~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~ 177 (342)
T KOG2160|consen 99 DKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS 177 (342)
T ss_pred HHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc
Confidence 37778888888887 67899999999999999999999999999999999999998774 78888899999999999976
Q ss_pred C-CHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHH
Q 015988 176 G-SQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLA 253 (397)
Q Consensus 176 ~-~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~ 253 (397)
. +..++..|+.++.+|-.+ ......+...++...|...+.+.....+++..++..+..|.........++...|....
T Consensus 178 ~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~ 257 (342)
T KOG2160|consen 178 DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRV 257 (342)
T ss_pred CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Confidence 4 467789999999999986 45567777777799999999997667889999999999997766555556656777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 254 VVEVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 254 Lv~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
+..+....+.++.+.++.++..+...
T Consensus 258 ~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 258 LENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHH
Confidence 88888888888889988888877654
No 43
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.4e-06 Score=86.58 Aligned_cols=294 Identities=18% Similarity=0.197 Sum_probs=205.2
Q ss_pred HhHHHHHHhhcC---CChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHHhcCCC-
Q 015988 82 QAVQPLVLMLRA---PDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSP--DLNLQEYAAAALLTLSASSV- 155 (397)
Q Consensus 82 ~~v~~Lv~lL~~---~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nLs~~~~- 155 (397)
+.|+.|+.-+.+ .+. ++.|+..|..+++ .+|..+.. -|+++|+..|+.+ |+++...++.++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eD-RR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLED-RRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhh-HHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 347888877766 344 8999999999987 46666654 4599999999864 88999999999999987663
Q ss_pred ------Cc----------hh-hhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chhHHHHHh-CCChHHHHHHhh
Q 015988 156 ------NK----------PF-ISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDNLSIILG-TNPIPSIVDLLI 215 (397)
Q Consensus 156 ------~~----------~~-i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~-~g~i~~Lv~ll~ 215 (397)
.+ +. +...+.|..|+..+...+..+|..++..|.+|-.. .+.+..+.. .-+|..|+.+|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 12 11 22467888999999999999999999999999764 455666655 568999999998
Q ss_pred hcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc-C---CHHHHHHHHHHHHHHhccCchhhHHHHHHc
Q 015988 216 FCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN-G---SLQAREHAVGALLMMCQSDRCKYREPILRE 291 (397)
Q Consensus 216 ~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-~---~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~ 291 (397)
+. ...++..++-.|..|+.+.....+++.=+++...|+.++.. + ...|.+-|+..|-||-.++. ..+..|.+.
T Consensus 177 Ds--rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~-SNQ~~FrE~ 253 (970)
T KOG0946|consen 177 DS--REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI-SNQNFFREG 253 (970)
T ss_pred hh--hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc-chhhHHhcc
Confidence 85 35678899999999999999888888667889999999974 2 24688999999999999873 577788888
Q ss_pred CChHHHHHHhhc---CCH----HHHHH------HHHHHHHhhcCCC-------CCcccCc-CchHHHHHHhhccCccchh
Q 015988 292 GVIPGLLELTIQ---GTP----KSQTK------ARTLLQLLRDSPY-------PRSELQP-DTLENIVCNIISQIDGDEQ 350 (397)
Q Consensus 292 g~v~~L~~ll~~---~~~----~~~~~------A~~~L~~l~~~~~-------~~~~~~~-~~~~~ll~~l~~~~~~~~~ 350 (397)
+-+|.|.+++.. ++. .-..+ |..+++.+..... +++++.. +.+..|. .+..+.+....
T Consensus 254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc-~il~~~~vp~d 332 (970)
T KOG0946|consen 254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLC-TILMHPGVPAD 332 (970)
T ss_pred ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHH-HHHcCCCCcHh
Confidence 899999988854 221 11112 2334444432211 3334433 5555554 44444432222
Q ss_pred h-HHHHHHHHHHHHHhHHHhHHHHHhhhhccCCCCC
Q 015988 351 S-GKAKKMLAEMVQVSMEQSLRHLQQRALVCTPADL 385 (397)
Q Consensus 351 ~-~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 385 (397)
. ..+.-.+...++ +-+.|...+.+-.-.+.|.|-
T Consensus 333 IltesiitvAevVR-gn~~nQ~~F~~v~~p~~~~Pr 367 (970)
T KOG0946|consen 333 ILTESIITVAEVVR-GNARNQDEFADVTAPSIPNPR 367 (970)
T ss_pred HHHHHHHHHHHHHH-hchHHHHHHhhccCCCCCCCc
Confidence 2 444445555554 444555555555555555433
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=4.1e-07 Score=88.77 Aligned_cols=304 Identities=13% Similarity=0.159 Sum_probs=205.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-H----HHh-HHHHHHhhcC-CChhHHHHHHHHHHhhhcCh
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQ-L----AQA-VQPLVLMLRA-PDSDHESALLALLNLAVKDE 113 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~-l----~~~-v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~ 113 (397)
...++.|.++|.+.+...++-|..+|.+++.++.+.-+. + .+. +|.++++.++ +..++..|+.++....-.
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-- 204 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-- 204 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec--
Confidence 467889999999999999999999999999887554322 1 122 8999999998 334688899888887652
Q ss_pred hhHHHHHH-cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 015988 114 KNKIKIVE-AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLS 192 (397)
Q Consensus 114 ~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs 192 (397)
..+..+.. ...++.+..+-...++++|...+.+|..|...-..|-.-.=.+.++.+++.-.+.+.++-..||.....++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 23344443 24567777777888999999999999998754332222223567778877778888999999999999999
Q ss_pred CCchhHHHHHh--CCChHHHHHHhhhcccCh-------------------------------------------------
Q 015988 193 THPDNLSIILG--TNPIPSIVDLLIFCKKSS------------------------------------------------- 221 (397)
Q Consensus 193 ~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~------------------------------------------------- 221 (397)
..+-.+..+.. ...+|.|+.-+.....+.
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 98754544444 345555554332211000
Q ss_pred -----HH---HHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhccCchhhHHHHH
Q 015988 222 -----KT---AEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE----NGSLQAREHAVGALLMMCQSDRCKYREPIL 289 (397)
Q Consensus 222 -----~~---~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~----~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~ 289 (397)
.+ ..+++.+|.|+ + ....++.++.+|+ +.+=.++|.++-+|..++.+. .+-+.
T Consensus 365 ~~~dWNLRkCSAAaLDVLanv----------f-~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc----M~g~~ 429 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANV----------F-GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC----MQGFV 429 (885)
T ss_pred ccccccHhhccHHHHHHHHHh----------h-HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH----hhhcc
Confidence 01 12233344432 2 3345566666665 444568999999999998642 33444
Q ss_pred H--cCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHH
Q 015988 290 R--EGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQV 364 (397)
Q Consensus 290 ~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~ 364 (397)
. ...+|.|+.++.+..+.+|...+|.|...+.--. .+..+-...+.+++..+. ++..+. +.|+.....+-+.
T Consensus 430 p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll---D~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL---DSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHh
Confidence 4 2378999999999999999999999988765322 234455566777776665 666666 7777776655443
No 45
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.72 E-value=5e-06 Score=83.99 Aligned_cols=298 Identities=18% Similarity=0.185 Sum_probs=200.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKIV 120 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~ 120 (397)
.+...+++++.+.+...++-+-.++..+...+++.-.. .+..+..-|.+++ .++..|+.+|.++.. ++....
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l---~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-- 114 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL---IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-- 114 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH---HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH--
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH---HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH--
Confidence 45667888888889999999999999998877662222 3666777777744 468889999999874 443333
Q ss_pred HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHH
Q 015988 121 EAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSI 200 (397)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~ 200 (397)
.++.+.+++.++++.+|..|+.++..+...++. .+... .++.+..+|.+.++.++..|+.++..+...++....
T Consensus 115 ---l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~ 188 (526)
T PF01602_consen 115 ---LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS 188 (526)
T ss_dssp ---HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred ---HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh
Confidence 377888999999999999999999999764322 22222 689999999999999999999999999111111111
Q ss_pred HHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q 015988 201 ILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 201 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~ 280 (397)
+. ...++.|.+++.. +++..+...+++|..++........ ....++.+..++.+.++.+...++.++..+....
T Consensus 189 ~~-~~~~~~L~~~l~~--~~~~~q~~il~~l~~~~~~~~~~~~---~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~ 262 (526)
T PF01602_consen 189 LI-PKLIRILCQLLSD--PDPWLQIKILRLLRRYAPMEPEDAD---KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP 262 (526)
T ss_dssp HH-HHHHHHHHHHHTC--CSHHHHHHHHHHHTTSTSSSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH
T ss_pred hH-HHHHHHhhhcccc--cchHHHHHHHHHHHhcccCChhhhh---HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch
Confidence 11 1223444444433 3566778888888877665443321 1357888999999888999999999999887653
Q ss_pred chhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCccchhh-HHHHHHHH
Q 015988 281 RCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLA 359 (397)
Q Consensus 281 ~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~ 359 (397)
. .-..+++.|.+++.+.++.++..+...|..+.... ...+. .....+. .+. .+..... .+|..+|.
T Consensus 263 --~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~-~~~~~~~-~l~--~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 263 --E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF-NQSLILF-FLL--YDDDPSIRKKALDLLY 329 (526)
T ss_dssp --H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG-THHHHHH-HHH--CSSSHHHHHHHHHHHH
T ss_pred --H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh-hhhhhhh-eec--CCCChhHHHHHHHHHh
Confidence 2 33457889999999888899999999998886654 12222 1111111 122 1222223 67777777
Q ss_pred HHHHHhHHHhHHHHH
Q 015988 360 EMVQVSMEQSLRHLQ 374 (397)
Q Consensus 360 ~l~~~~~~~~~~~~~ 374 (397)
.++... |.+.|+
T Consensus 330 ~l~~~~---n~~~Il 341 (526)
T PF01602_consen 330 KLANES---NVKEIL 341 (526)
T ss_dssp HH--HH---HHHHHH
T ss_pred hccccc---chhhHH
Confidence 776543 444444
No 46
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.9e-06 Score=77.96 Aligned_cols=186 Identities=18% Similarity=0.163 Sum_probs=151.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHH
Q 015988 135 PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDL 213 (397)
Q Consensus 135 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~l 213 (397)
.+.+-++.|+.-|-.+..+-+|...+...|++..++..+++.+.++|..|+++|...+.+ +..+..+.+.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 356777888888888888778999999999999999999999999999999999999986 6677888999999999999
Q ss_pred hhhcccChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhccCchhhHHHHHH
Q 015988 214 LIFCKKSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVVEVLEN--GSLQAREHAVGALLMMCQSDRCKYREPILR 290 (397)
Q Consensus 214 l~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~ 290 (397)
+.+++ ....+..|+.++..|..+.. +...+. ..++...|.+.+.+ .+...+..++..+..+..... ..+..+..
T Consensus 175 ls~~~-~~~~r~kaL~AissLIRn~~~g~~~fl-~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~ 251 (342)
T KOG2160|consen 175 LSSDD-PNTVRTKALFAISSLIRNNKPGQDEFL-KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASS 251 (342)
T ss_pred HccCC-CchHHHHHHHHHHHHHhcCcHHHHHHH-hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHH
Confidence 98754 34667899999999987665 566666 77889999999998 457788999999999988763 33444445
Q ss_pred cCChHHHHHHhhcCCHHHHHHHHHH-HHHhhcCC
Q 015988 291 EGVIPGLLELTIQGTPKSQTKARTL-LQLLRDSP 323 (397)
Q Consensus 291 ~g~v~~L~~ll~~~~~~~~~~A~~~-L~~l~~~~ 323 (397)
.|....+..+....+..+++.+... +..+....
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 7777777788888889999999765 44444433
No 47
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.71 E-value=2.8e-06 Score=85.76 Aligned_cols=254 Identities=17% Similarity=0.196 Sum_probs=175.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHHHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKIVE 121 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~ 121 (397)
.+..+.+-|.++++.+|..|+.+|.++.. ++..+ ..++.+..++.+++ .++..|+.++..+...+++. +..
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~---~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~ 151 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE---PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VED 151 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH---HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHG
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh---HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHH
Confidence 45567777888899999999999999873 23332 23677788888744 47999999999998866653 222
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHH-hcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHH
Q 015988 122 AGALEPIISFLQSPDLNLQEYAAAALLTL-SASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSI 200 (397)
Q Consensus 122 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~ 200 (397)
. .++.+..+|.+.++.++..|+.++..+ ..++... -.-...+..|.+++...++-.+...+.+|..++........
T Consensus 152 ~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~ 228 (526)
T PF01602_consen 152 E-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD 228 (526)
T ss_dssp G-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH
T ss_pred H-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh
Confidence 3 588999999999999999999999999 1111101 11234455556666778899999999999998875432221
Q ss_pred HHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q 015988 201 ILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 201 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~ 280 (397)
- ...++.+..++++. +..++..|..++..+..... . -..+++.|+.++.++++.++..++..|..++...
T Consensus 229 ~--~~~i~~l~~~l~s~--~~~V~~e~~~~i~~l~~~~~----~--~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 229 K--NRIIEPLLNLLQSS--SPSVVYEAIRLIIKLSPSPE----L--LQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp H--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSHH----H--HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred H--HHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhcchH----H--HHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 0 34566777777764 35677888888887766655 2 2357788999998888889999999999888764
Q ss_pred chhhHHHHHHcCChHHHHHHhh-cCCHHHHHHHHHHHHHhhcCCC
Q 015988 281 RCKYREPILREGVIPGLLELTI-QGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 281 ~~~~r~~i~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
...+. .....+..+. +.+..++..+..+|..++...+
T Consensus 299 ----~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n 336 (526)
T PF01602_consen 299 ----PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESN 336 (526)
T ss_dssp ----HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred ----chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence 11222 2222333444 6777888888888887766543
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.3e-05 Score=80.57 Aligned_cols=213 Identities=22% Similarity=0.248 Sum_probs=158.0
Q ss_pred hhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChHHHHHHHH--hHHHHHHhhcC---CChhHHHHHHHHHHhhhcCh
Q 015988 40 ASSAVHRALHLIQSD-DPDLKLEAAREIRRLTKTSQRCRRQLAQ--AVQPLVLMLRA---PDSDHESALLALLNLAVKDE 113 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~v~~Lv~lL~~---~~~~~~~a~~~L~~L~~~~~ 113 (397)
....++.|+.+|+.+ +.+++..|+++|.+++..-|..-..+.+ +||.|++-|.. -| +.+.++.+|-.+++..+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiD-vAEQ~LqALE~iSR~H~ 287 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYID-VAEQSLQALEKISRRHP 287 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcc
Confidence 345688899999865 7899999999999999876676666665 49999988877 34 48899999999998544
Q ss_pred hhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC--CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015988 114 KNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS--VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNL 191 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nL 191 (397)
..+.++|++...+..|..=....|..|+.+..|++..= +.-..+ ..++|.|..+|...+....+.++.++..+
T Consensus 288 ---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 288 ---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred ---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 56788999999999998777788999999999998632 222222 35799999999999999999999998888
Q ss_pred cCC----chhHHHHHhCCChHHHHHHhhhccc--ChHHHHHHHHHHHHhcCC-cccchhhhhccCcHHHHHHHHh
Q 015988 192 STH----PDNLSIILGTNPIPSIVDLLIFCKK--SSKTAEKCTSLIESLVGF-DEGRIVLTSEEGGVLAVVEVLE 259 (397)
Q Consensus 192 s~~----~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~nL~~~-~~~~~~~~~~~g~i~~Lv~lL~ 259 (397)
+.. ++--+++...|.|....+|+.-.+. ...+.....+.|..++.+ +....... ..++...|..+|.
T Consensus 363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQ 436 (1051)
T ss_pred HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHh
Confidence 753 3444778889999999998876421 123334555666666554 44444444 5556666666554
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=4.2e-06 Score=86.80 Aligned_cols=239 Identities=15% Similarity=0.141 Sum_probs=157.0
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH-HHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhH
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQR-CRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~-~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~ 116 (397)
+-...++.+-.+|.+.++..|..++.+|..++.+..+ .+..+.+.++..+..|++++. ++..|+.+++.++.+-...-
T Consensus 345 v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 345 VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 5556777888899999999999999999999987644 334444458888999998554 68889999999998655555
Q ss_pred HHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhh--hcCCHHHHH-HHHhcCCHHHHHHHHHHHHhhc
Q 015988 117 IKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFIS--ASGAIPLLV-EILRYGSQQAKFDAVMALSNLS 192 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~L~-~lL~~~~~~~~~~a~~aL~nLs 192 (397)
..-...-.++.|+..+.+ .++.++.+|+.++.|++.... +..+. =.+.+.+++ .++.++.+.+++.+..+|...+
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 555566778889998876 477999999999999986433 22222 145666344 4456788999999999999988
Q ss_pred CCchhHHHHHhCCChHHHHHHhhhcc--cChHHHHHHHHHHHHhcCCcccchhhhh-ccCcHHHHHHH---HhcCCHHHH
Q 015988 193 THPDNLSIILGTNPIPSIVDLLIFCK--KSSKTAEKCTSLIESLVGFDEGRIVLTS-EEGGVLAVVEV---LENGSLQAR 266 (397)
Q Consensus 193 ~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~-~~g~i~~Lv~l---L~~~~~~v~ 266 (397)
...+.+-.=.-...++.|.+.|.... +...++...+.++.-+ ...-++..+.. ....+..+..+ ....+...+
T Consensus 504 ~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli-~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~ 582 (1075)
T KOG2171|consen 504 DAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI-ARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLR 582 (1075)
T ss_pred HHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH-HHHhhhhhhhHhHHHHHHHHHhhcccchhhccccH
Confidence 75433322122456788888887764 2233444444443322 12222233321 01233333333 122345567
Q ss_pred HHHHHHHHHHhcc
Q 015988 267 EHAVGALLMMCQS 279 (397)
Q Consensus 267 ~~a~~~L~~L~~~ 279 (397)
+.......++|+.
T Consensus 583 sy~~~~warmc~i 595 (1075)
T KOG2171|consen 583 SYMIAFWARMCRI 595 (1075)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777764
No 50
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=6.7e-06 Score=73.72 Aligned_cols=275 Identities=19% Similarity=0.211 Sum_probs=179.5
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHH-cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh
Q 015988 85 QPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVE-AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA 162 (397)
Q Consensus 85 ~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 162 (397)
..++.+|++ +..++..|+..+..++.. ..+..... .-.++.+..++....+ .+.|+.+|.|++.+...+..+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 457888888 334588899888888874 33333322 3457778888887666 66788999999999888888877
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh-------CCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 163 SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILG-------TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 163 ~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
. .+..++.++.++....-...+..|.||+..++....+.. .|.++........+.....-..-..-++.||+
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 6 788888888877667777788899999998776544432 33444444444443221122356677889999
Q ss_pred CCcccchhhhhccCcH--HHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHc--CChHHHH-------------
Q 015988 236 GFDEGRIVLTSEEGGV--LAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILRE--GVIPGLL------------- 298 (397)
Q Consensus 236 ~~~~~~~~~~~~~g~i--~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~--g~v~~L~------------- 298 (397)
....+|..+. +...+ ..++.+-..++.-=+...+++|.|.|... .....+... ..+|.++
T Consensus 161 ~~~~gR~l~~-~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 161 QFEAGRKLLL-EPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred hhhhhhhHhc-chhhhhHhhhhcccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 9999998877 44432 22333333233333466889999988865 444444442 2333332
Q ss_pred --------HHhh-----cCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCccchhhHHHHHHHHHHHHHh
Q 015988 299 --------ELTI-----QGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVS 365 (397)
Q Consensus 299 --------~ll~-----~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~~~ 365 (397)
+++. +.++.++..-+.+|-.++.....|+.+...+++++++.+-......+..++.-++...+++..
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLE 317 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 3332 256889999999998888887788999999999999988433333322233334444555544
Q ss_pred HH
Q 015988 366 ME 367 (397)
Q Consensus 366 ~~ 367 (397)
+.
T Consensus 318 ~~ 319 (353)
T KOG2973|consen 318 PE 319 (353)
T ss_pred cc
Confidence 33
No 51
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=2.5e-05 Score=81.20 Aligned_cols=309 Identities=17% Similarity=0.163 Sum_probs=193.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTS-QRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
+.++.|..-.++.++..|+.|+..|..+...- ...+..+.+..+.+.+.+.+ ++.++..|++++...+...+.++...
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence 45666777778999999999999999988642 23333444445666666666 33379999999998887554444433
Q ss_pred HH-cCChHHHHHhh----CCCCHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 015988 120 VE-AGALEPIISFL----QSPDLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEILRYG--SQQAKFDAVMALSN 190 (397)
Q Consensus 120 ~~-~g~i~~L~~lL----~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~aL~n 190 (397)
-. ...+|.++..+ ..++.+....++.+|--+...+. .+..+ ...+...+.+..+. +..+|..|+..|..
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 33 23455555544 45666666777777777765443 12221 22444555555543 57899999999999
Q ss_pred hcCC-chhHHHHHh--CCChHHHHHHhhhcccC--------------hHHHHHHHHHHHHhcCCcccchhhhhccCcHHH
Q 015988 191 LSTH-PDNLSIILG--TNPIPSIVDLLIFCKKS--------------SKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLA 253 (397)
Q Consensus 191 Ls~~-~~~~~~i~~--~g~i~~Lv~ll~~~~~~--------------~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~ 253 (397)
++.. +..++.... ...++.++.++.....+ ...-..|.++|-.++.+-.+...+- -..+.
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p---~~~~~ 352 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP---PLFEA 352 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH---HHHHH
Confidence 9886 222222222 23455555555432111 1133556677776665554443322 24566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH-cCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC--CCCCcccC
Q 015988 254 VVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR-EGVIPGLLELTIQGTPKSQTKARTLLQLLRDS--PYPRSELQ 330 (397)
Q Consensus 254 Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~--~~~~~~~~ 330 (397)
+-.++.+.+..-|..++.+|..++.+.. +. .... ..+++.++..+.+.+|.||.+|+.++-.++.+ +..++...
T Consensus 353 l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~--m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 353 LEAMLQSTEWKERHAALLALSVIAEGCS-DV--MIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcccH-HH--HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 6777788899999999999999987752 21 1122 46888889999999999999999999999765 33555555
Q ss_pred cCchHHHHHHhhccCccchhhHHHHHHH
Q 015988 331 PDTLENIVCNIISQIDGDEQSGKAKKML 358 (397)
Q Consensus 331 ~~~~~~ll~~l~~~~~~~~~~~~A~~~L 358 (397)
+-..+.++..+-+..+...++.+|..++
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~ 457 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALV 457 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHH
Confidence 5566666655543223333335555555
No 52
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.52 E-value=8.9e-05 Score=70.75 Aligned_cols=233 Identities=17% Similarity=0.194 Sum_probs=162.6
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHH-HHhhcC---CChhHHHHHHHHHHhhhcCh
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPL-VLMLRA---PDSDHESALLALLNLAVKDE 113 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~L-v~lL~~---~~~~~~~a~~~L~~L~~~~~ 113 (397)
.-....+.+..++-+++.++|..+.+.++.+..+. +.-..+.+. ++.+ +.-|.. .+.-+++|++.++.+..-.
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~- 99 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK- 99 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-
Confidence 33445556665555666999999999999999876 444444443 4433 333433 3335788999888887632
Q ss_pred hhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 114 KNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
.... -...|.+..++.+..+.++..+..++.+|+-++..++ +.+...||+..|++.+-++..+..+..+.++..+-.
T Consensus 100 ~~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 100 KGPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred CCcc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 1111 2356788899999999999999999999999997543 456689999999999988887888889999999999
Q ss_pred CchhHHHHHhCCChHHHHHHhhhc-----ccCh--HHHHHHHHHHHHhcCCcccchhhhhcc-CcHHHHHHHHhcCCHHH
Q 015988 194 HPDNLSIILGTNPIPSIVDLLIFC-----KKSS--KTAEKCTSLIESLVGFDEGRIVLTSEE-GGVLAVVEVLENGSLQA 265 (397)
Q Consensus 194 ~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~--~~~~~a~~~L~nL~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~v 265 (397)
.+..|+.+...--++.+..-..+. .++. .....+..++..+-.+=.|.-.+..+. .++..|+..|..+++++
T Consensus 177 ~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~i 256 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEI 256 (371)
T ss_pred CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHH
Confidence 998888776633355554444332 1122 234555555555544444444443232 68999999999999999
Q ss_pred HHHHHHHHHHH
Q 015988 266 REHAVGALLMM 276 (397)
Q Consensus 266 ~~~a~~~L~~L 276 (397)
++..+.++..+
T Consensus 257 r~~Ildll~dl 267 (371)
T PF14664_consen 257 RKAILDLLFDL 267 (371)
T ss_pred HHHHHHHHHHH
Confidence 99999999977
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=98.39 E-value=0.00048 Score=71.38 Aligned_cols=184 Identities=15% Similarity=0.076 Sum_probs=123.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhC
Q 015988 125 LEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGT 204 (397)
Q Consensus 125 i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~ 204 (397)
++++.+.+.+.++-+|..|+-++.++-..++ ..+.+.|.++.|.++|.+.++.+..+|+.+|..+.......-. ...
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~ 218 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSN 218 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHH
Confidence 4556777888899999999999999865443 3344678899999999999999999999999999764332211 223
Q ss_pred CChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhh
Q 015988 205 NPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKY 284 (397)
Q Consensus 205 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (397)
+.+..|+..+.+.+ ...+...+.+|..... ...... ...+..+...|++.++.|.-.|+.++.++....+.+.
T Consensus 219 ~~~~~Ll~~L~e~~--EW~Qi~IL~lL~~y~P--~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~ 291 (746)
T PTZ00429 219 EWVNRLVYHLPECN--EWGQLYILELLAAQRP--SDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQEL 291 (746)
T ss_pred HHHHHHHHHhhcCC--hHHHHHHHHHHHhcCC--CCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHH
Confidence 34566777676543 3445566666654322 221111 2467788888889999999999999999986532222
Q ss_pred HHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 285 REPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 285 r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
...+.. ...+.|+.+ .+.++.+|..+..-+..+.
T Consensus 292 ~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 292 IERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence 222211 123555666 4567889988887665554
No 54
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.35 E-value=3.4e-06 Score=66.43 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=119.0
Q ss_pred CCHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccch
Q 015988 164 GAIPLLVEILR-YGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRI 242 (397)
Q Consensus 164 g~i~~L~~lL~-~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 242 (397)
+.+..|+.-.. ..+.+.+++...-|.|.+.++-|-..+....+++..++-+... +..+++-+.+.|+|+|.+..+.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~--ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ--NELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc--cHHHHHHhHHHHHhhccChHHHH
Confidence 34555554443 3688999999999999999999999999999999999988874 56889999999999999999999
Q ss_pred hhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHH
Q 015988 243 VLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQ 317 (397)
Q Consensus 243 ~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~ 317 (397)
.|. +.++++.++..+.++...+...++..+..|+.... .-|..+....++..+...-.+.+...+--|...|.
T Consensus 94 ~I~-ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R-t~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 94 FIR-EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER-TERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHH-HhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc-chhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 988 89999999999999999999999999999998763 45677776666666555543444444444444443
No 55
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.35 E-value=0.00031 Score=65.91 Aligned_cols=298 Identities=15% Similarity=0.145 Sum_probs=192.7
Q ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChHHHHHHHHh--------HHHHHHhhcC-CChhHHHHHHHHHHhhhc
Q 015988 42 SAVHRALHLIQSD-DPDLKLEAAREIRRLTKTSQRCRRQLAQA--------VQPLVLMLRA-PDSDHESALLALLNLAVK 111 (397)
Q Consensus 42 ~~l~~lv~lL~s~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--------v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~ 111 (397)
..+..++.+++.. .++.....+..+-.+.+.++..-..+... -...+.+|.. ...+...+.+.+..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 5566778877654 45667777777888887764333333331 4556777766 333555577777777653
Q ss_pred Chhh---HHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc--CCHHHHHHHH
Q 015988 112 DEKN---KIKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY--GSQQAKFDAV 185 (397)
Q Consensus 112 ~~~~---~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~ 185 (397)
.... ...-+..| .|-..+++ .+.+....++++|..+...++.|..++...++..++..+.+ .+..++++.+
T Consensus 145 g~~~~~~~e~~~~~~---~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 145 GNCKMELSELDVYKG---FLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred ccccccchHHHHHHH---HHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 2221 11111222 23344444 56667778889999999999999999999999999998843 4688999999
Q ss_pred HHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-------cchhhhhccCcHHHHHHHH
Q 015988 186 MALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-------GRIVLTSEEGGVLAVVEVL 258 (397)
Q Consensus 186 ~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-------~~~~~~~~~g~i~~Lv~lL 258 (397)
.+++-|+.++...+.+...+.|+.|.++++++. ..++.+-++.++.|+....+ ...+++ . +.++.-++.|
T Consensus 222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~-KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv-~-~~v~k~l~~L 298 (442)
T KOG2759|consen 222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKEST-KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV-L-CKVLKTLQSL 298 (442)
T ss_pred HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH-h-cCchHHHHHH
Confidence 999999999998888877899999999999874 46889999999999977663 334454 3 4455555666
Q ss_pred hc---CCHHHHH-------HHHHHHHHHhccCchhhH------------------------HHHHHc--CChHHHHHHhh
Q 015988 259 EN---GSLQARE-------HAVGALLMMCQSDRCKYR------------------------EPILRE--GVIPGLLELTI 302 (397)
Q Consensus 259 ~~---~~~~v~~-------~a~~~L~~L~~~~~~~~r------------------------~~i~~~--g~v~~L~~ll~ 302 (397)
.. .|+++.+ ..-.....|++.+ ++. ..+-+. .++..|++++.
T Consensus 299 ~~rkysDEDL~~di~~L~e~L~~svq~LsSFD--eY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe 376 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLTEKLKNSVQDLSSFD--EYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLE 376 (442)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHhhccHH--HHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHh
Confidence 53 3444333 2333333444432 222 222222 36788888887
Q ss_pred cCC-HHHHHHHHH-HHHHhhcCCCCCcccCc-CchHHHHHHhhccCccc
Q 015988 303 QGT-PKSQTKART-LLQLLRDSPYPRSELQP-DTLENIVCNIISQIDGD 348 (397)
Q Consensus 303 ~~~-~~~~~~A~~-~L~~l~~~~~~~~~~~~-~~~~~ll~~l~~~~~~~ 348 (397)
..+ |.+---|+. +=.-+...|..+.++.. ||-..+ ..|..+.++.
T Consensus 377 ~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~v-M~Llnh~d~~ 424 (442)
T KOG2759|consen 377 TSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERV-MNLLNHEDPE 424 (442)
T ss_pred cCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHH-HHHhcCCCch
Confidence 755 555444544 34444666777666666 555554 4666555443
No 56
>PF05536 Neurochondrin: Neurochondrin
Probab=98.28 E-value=0.00015 Score=72.72 Aligned_cols=234 Identities=17% Similarity=0.194 Sum_probs=155.8
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHhhhcChhh---HHHHHHcCChHHHHHhhCCC-------CHHHHHHHHHHHHHHhc
Q 015988 84 VQPLVLMLRA-PDSDHESALLALLNLAVKDEKN---KIKIVEAGALEPIISFLQSP-------DLNLQEYAAAALLTLSA 152 (397)
Q Consensus 84 v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~---~~~i~~~g~i~~L~~lL~~~-------~~~~~~~a~~~L~nLs~ 152 (397)
+...+.+|+. .|.-+..++..+.++...++.. +..++++-+.+-|-++|+.+ ....+..|+.+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5666777777 4444677777778887755532 44677887788888888862 34567789999999998
Q ss_pred CCCCchhhhhcCCHHHHHHHHhcCCH-HHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHH
Q 015988 153 SSVNKPFISASGAIPLLVEILRYGSQ-QAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLI 231 (397)
Q Consensus 153 ~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L 231 (397)
+++....-.-.+.||.|++.+.+.+. ++...++.+|..++..++.++.+++.|+++.|++.+.+. +...+.++.++
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~---~~~~E~Al~lL 163 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ---SFQMEIALNLL 163 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC---cchHHHHHHHH
Confidence 66543322224679999999988776 999999999999999999999999999999999999884 34568999999
Q ss_pred HHhcCCcccchhhhhcc----CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchh----hHHHHHHcCChHHHHHHhhc
Q 015988 232 ESLVGFDEGRIVLTSEE----GGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCK----YREPILREGVIPGLLELTIQ 303 (397)
Q Consensus 232 ~nL~~~~~~~~~~~~~~----g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~----~r~~i~~~g~v~~L~~ll~~ 303 (397)
.+++....... .-... ..++.+-..+.......+-..+..|..+-...+.. ....-+-..+..-+..++.+
T Consensus 164 ~~Lls~~~~~~-~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKS-WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhh-hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 99866443211 11111 23344444454444555667788888876554111 11122222333444455555
Q ss_pred -CCHHHHHHHHHHHHHhhc
Q 015988 304 -GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 304 -~~~~~~~~A~~~L~~l~~ 321 (397)
..+.-|..|..+...+.+
T Consensus 243 r~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 455666666666555543
No 57
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.00012 Score=66.31 Aligned_cols=297 Identities=15% Similarity=0.131 Sum_probs=192.8
Q ss_pred HHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhcChhh----HHHHHHcCChHHHHHhhCCCC
Q 015988 62 AAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVKDEKN----KIKIVEAGALEPIISFLQSPD 136 (397)
Q Consensus 62 a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~----~~~i~~~g~i~~L~~lL~~~~ 136 (397)
+..+|-.+.+.. +-...+.+.++.|-.-|.. .++++.-++..+..+..+++.| ...++++|..+.++..+..++
T Consensus 63 cVscLERLfkak-egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 63 CVSCLERLFKAK-EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred HHHHHHHHHhhc-cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 455555554432 1222222334555544544 4446777888888887766644 234557899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHH--HHHHhcCCHHHHHHHHHHHHhhcC-CchhHHHHHhCCChHHHHHH
Q 015988 137 LNLQEYAAAALLTLSASSVNKPFISASGAIPLL--VEILRYGSQQAKFDAVMALSNLST-HPDNLSIILGTNPIPSIVDL 213 (397)
Q Consensus 137 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L--~~lL~~~~~~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~l 213 (397)
.++...|...+..++.....-..+.+...+..+ ..+....+.-++......+..+.+ .++........|.++.|..=
T Consensus 142 deVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE 221 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE 221 (524)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence 999999999999999988877788777666544 334445566778888888887766 56666777778988888877
Q ss_pred hhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC--HHHHHHHHHHHHHHhccCc--hhhHHHHH
Q 015988 214 LIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS--LQAREHAVGALLMMCQSDR--CKYREPIL 289 (397)
Q Consensus 214 l~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~v~~~a~~~L~~L~~~~~--~~~r~~i~ 289 (397)
++.. ++.-++..++.....|+....++..+. +.|.|+.+-.++...+ |--+..++.....+-.... .-.-+++.
T Consensus 222 lkGt-eDtLVianciElvteLaeteHgrefla-QeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaic 299 (524)
T KOG4413|consen 222 LKGT-EDTLVIANCIELVTELAETEHGREFLA-QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAIC 299 (524)
T ss_pred hcCC-cceeehhhHHHHHHHHHHHhhhhhhcc-hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHH
Confidence 7764 345677889999999988888888776 8899999999997533 4444444444444332210 00112222
Q ss_pred Hc--CChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcC---chHHHHHHhhccCccchhhHHHHHHHHHHH
Q 015988 290 RE--GVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPD---TLENIVCNIISQIDGDEQSGKAKKMLAEMV 362 (397)
Q Consensus 290 ~~--g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~---~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~ 362 (397)
+. -.+....+++...+|..++.|+.++-.+..+.....++... ...+++.....+ +...+.+.|...|.++.
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq-nahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ-NAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc-cccchHHHHHHHHHHhh
Confidence 21 13444456677789999999999999997776655555543 345555444322 22222255555555554
No 58
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.21 E-value=1.5e-05 Score=62.95 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=98.6
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHH
Q 015988 124 ALEPIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIIL 202 (397)
Q Consensus 124 ~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~ 202 (397)
.+..|+.-.+ -.+.+.++....-|.|++.+..|-..+.+..+++.++.-|..++...++.+++.|+|+|.++.|++.|.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 3445555444 347788888888999999998899999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccc
Q 015988 203 GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGR 241 (397)
Q Consensus 203 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~ 241 (397)
+.++++.++..+.++. ...+..++..+..|+.....-
T Consensus 97 ea~g~plii~~lssp~--e~tv~sa~~~l~~l~~~~Rt~ 133 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPP--EITVHSAALFLQLLEFGERTE 133 (173)
T ss_pred HhcCCceEEeecCCCh--HHHHHHHHHHHHHhcCcccch
Confidence 9999999998888863 456788888898888766543
No 59
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.19 E-value=1.3e-05 Score=75.67 Aligned_cols=173 Identities=14% Similarity=0.133 Sum_probs=137.4
Q ss_pred chhhhhcCCHHHHHHHHhcCCHHH--HHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh
Q 015988 157 KPFISASGAIPLLVEILRYGSQQA--KFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 157 ~~~i~~~g~i~~L~~lL~~~~~~~--~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL 234 (397)
+..+...|++..|++++..++.+. +.+|...|..+.. .+|+..+.+.| +..++.+-+.. +..+.....+++|.|+
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~-e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER-EPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc-CcHHHHHHHHHHHHHH
Confidence 456677899999999999988665 8888888877654 46777787765 44555555443 3357788999999999
Q ss_pred cCCc-ccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHH
Q 015988 235 VGFD-EGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKAR 313 (397)
Q Consensus 235 ~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~ 313 (397)
-.+. +.+..++ ..|++..++-..+..+|.+-.+++-+|.|++-+...+++..+++..+-+.|..+..+.++..+.+|+
T Consensus 250 FKHSeet~~~Lv-aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLV-AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHH-hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 6655 4555666 8999999999888889999999999999998887678899999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccCcCc
Q 015988 314 TLLQLLRDSPYPRSELQPDT 333 (397)
Q Consensus 314 ~~L~~l~~~~~~~~~~~~~~ 333 (397)
-+++.+.-+.+.+..+...+
T Consensus 329 lAV~vlat~KE~E~~VrkS~ 348 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKSG 348 (832)
T ss_pred HHHhhhhhhhhhhHHHhhcc
Confidence 99988877766555554433
No 60
>PTZ00429 beta-adaptin; Provisional
Probab=98.18 E-value=0.00094 Score=69.24 Aligned_cols=255 Identities=13% Similarity=0.075 Sum_probs=171.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
.|-+..+-+.|.+.+...+..+++-+..+.....+.-.. .+..+.++.+++. .+.-..-.+.+.+..+++.-..
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~L----F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL- 105 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYL----FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL- 105 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHH----HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence 456677888888888888888887655544333233322 4455556666555 4555556677777655443222
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHH
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLS 199 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~ 199 (397)
++..|.+=+.++++.+|..|+++++++-.. .+ -.-.++.+.+.+.+.++-+|..|+.++.++-..+. .
T Consensus 106 ----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--e 173 (746)
T PTZ00429 106 ----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SV-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--Q 173 (746)
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--c
Confidence 355677777888999999999998887531 11 12245666777888999999999999999866422 2
Q ss_pred HHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 200 IILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 200 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
.+.+.|.++.|.+++.+. +..++..|+.+|..+.......-.+ ..+.+..|+..|..-++..+-..+.+|......
T Consensus 174 lv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~ 249 (746)
T PTZ00429 174 LFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECNEWGQLYILELLAAQRPS 249 (746)
T ss_pred cccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Confidence 334567888999988764 4678899999999986554332222 345677778878777788888777777553222
Q ss_pred CchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 280 DRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 280 ~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
+ .. .. ...+..+...+.+.++.|.-.|+.++..+...
T Consensus 250 ~---~~-e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 250 D---KE-SA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred C---cH-HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 1 11 11 34677778888888999999999988777644
No 61
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.14 E-value=4.7e-06 Score=52.67 Aligned_cols=40 Identities=48% Similarity=0.644 Sum_probs=38.0
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 015988 112 DEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLS 151 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs 151 (397)
+++++..+++.|++++|+.+|+++++++++.|+++|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999997
No 62
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00062 Score=68.18 Aligned_cols=312 Identities=13% Similarity=0.115 Sum_probs=189.9
Q ss_pred hhHHHHHHHhcCCCH-HHHHHHHHHHHHHhhh-ChHHHHHHHHh-HHHHHHhhcC--CCh-hHHHHHHHHHHhhhcChhh
Q 015988 42 SAVHRALHLIQSDDP-DLKLEAAREIRRLTKT-SQRCRRQLAQA-VQPLVLMLRA--PDS-DHESALLALLNLAVKDEKN 115 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~-~~~~~a~~~L~~l~~~-~~~~~~~l~~~-v~~Lv~lL~~--~~~-~~~~a~~~L~~L~~~~~~~ 115 (397)
+.+..++.+...+.+ .++..++.+|+.++.+ +|+.-..-.+. +..++.-.+. ++. ++..|..+|.+--.-...|
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n 208 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN 208 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 445566666655544 5889999999999986 34422222222 5556655554 332 6888888888754311112
Q ss_pred HHHHHH-cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-CCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 116 KIKIVE-AGALEPIISFLQSPDLNLQEYAAAALLTLSAS-SVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 116 ~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
...=.+ .-.+...++.-++++.+++..|..+|..+... .+.-....+...+..-+.-+++.++++..+++..=.+++.
T Consensus 209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 111112 22345667777888999999999999988642 2332333344455556667788999998888877666654
Q ss_pred C-chh---------------HHHHHh---CCChHHHHHHhhhcccC-----hHHHHHHHHHHHHhcCCcccchhhhhccC
Q 015988 194 H-PDN---------------LSIILG---TNPIPSIVDLLIFCKKS-----SKTAEKCTSLIESLVGFDEGRIVLTSEEG 249 (397)
Q Consensus 194 ~-~~~---------------~~~i~~---~g~i~~Lv~ll~~~~~~-----~~~~~~a~~~L~nL~~~~~~~~~~~~~~g 249 (397)
- .+. ...+.+ .+++|.|+++|...+++ -...+.|..+|.-++.. + ...
T Consensus 289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~-~D~ 360 (859)
T KOG1241|consen 289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------V-GDD 360 (859)
T ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------h-ccc
Confidence 2 110 011111 35678888888652111 12334444455433221 1 334
Q ss_pred cHHHHHHHHh----cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC-
Q 015988 250 GVLAVVEVLE----NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY- 324 (397)
Q Consensus 250 ~i~~Lv~lL~----~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~- 324 (397)
.+++.+.+++ +++-.-++.++.++..+-.++. ..+..-...+++|.++.++.+.+-.++..+.|.+..+++.-.
T Consensus 361 Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~-~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 361 IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE-PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc-hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 5555555554 5677778899999999988874 344444457889999999998888999999999998877643
Q ss_pred --CCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHHhH
Q 015988 325 --PRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQVSM 366 (397)
Q Consensus 325 --~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~~~ 366 (397)
...+.....++-++..| +..++. ..+++.+-.+++...
T Consensus 440 ~~~n~~~l~~~l~~l~~gL----~DePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGL----NDEPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred hcccHhhhhHHHHHHHHHh----hhCchHHHHHHHHHHHHHHHHH
Confidence 11222223333333322 333444 888888888887654
No 63
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00012 Score=70.37 Aligned_cols=199 Identities=10% Similarity=0.060 Sum_probs=146.0
Q ss_pred HHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-CCCchhhhhcCCHHHHHHHHhcCCHH
Q 015988 101 ALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSAS-SVNKPFISASGAIPLLVEILRYGSQQ 179 (397)
Q Consensus 101 a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L~~lL~~~~~~ 179 (397)
++.+|..+++.-.-.|.-+.++...++|+.+|+.++..+.--+...++|+... ...+..+.+.|.+..|+.++.+.+..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 34455566665455688888899999999999998777777788889998764 45678888999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchh--HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc----cchhhh---hccCc
Q 015988 180 AKFDAVMALSNLSTHPDN--LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE----GRIVLT---SEEGG 250 (397)
Q Consensus 180 ~~~~a~~aL~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~----~~~~~~---~~~g~ 250 (397)
.+.+..|.|+++..+.++ +-++...-++..++++..++ +-.+++.++++|+|+..+.. .+.... ...-.
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 999999999999987443 44455666788999988763 56789999999999965322 111111 01113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH-cCChHHHHHHhh
Q 015988 251 VLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR-EGVIPGLLELTI 302 (397)
Q Consensus 251 i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~ 302 (397)
...|++.+...+|-..+..+.+|.+++..++ +.+..+.+ ...+..+..++.
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~-~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDD-TLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccc-hHHHHHHhHHHHHHHHHHHHH
Confidence 4567777777787777777888988888773 56666655 455555555553
No 64
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.08 E-value=0.00079 Score=66.20 Aligned_cols=226 Identities=15% Similarity=0.102 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCC-----CHHHHHHHHHHHHHHhcCC-CCchhhh-hcCCHHHH
Q 015988 97 DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSP-----DLNLQEYAAAALLTLSASS-VNKPFIS-ASGAIPLL 169 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~nLs~~~-~~~~~i~-~~g~i~~L 169 (397)
+...|+++|.|+...++..|..+.+.|+.+.+++.|+.. +.++.-...++|.-++... ..+..+. +.+++..+
T Consensus 48 v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l 127 (446)
T PF10165_consen 48 VSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELL 127 (446)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHH
Confidence 689999999999999999999999999999999999876 6778888888888887644 4566665 46788877
Q ss_pred HHHHhc-----------------CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhc-------ccChHHHH
Q 015988 170 VEILRY-----------------GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFC-------KKSSKTAE 225 (397)
Q Consensus 170 ~~lL~~-----------------~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~~~ 225 (397)
...|.. .+......++..+.|+.........--..+.++.++.++..- .+......
T Consensus 128 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~ 207 (446)
T PF10165_consen 128 TEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHS 207 (446)
T ss_pred HHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHH
Confidence 776632 134556788999999987533222111233455555554432 22244567
Q ss_pred HHHHHHHHhcCCc-cc-------chh---hhhccCcHHHHHHHHhc----CC----HHHHHHHHHHHHHHhccCchhhHH
Q 015988 226 KCTSLIESLVGFD-EG-------RIV---LTSEEGGVLAVVEVLEN----GS----LQAREHAVGALLMMCQSDRCKYRE 286 (397)
Q Consensus 226 ~a~~~L~nL~~~~-~~-------~~~---~~~~~g~i~~Lv~lL~~----~~----~~v~~~a~~~L~~L~~~~~~~~r~ 286 (397)
.+..+|.|+-... +. ... .......+..|+.+|+. .. .+.....+.+|.+++... ...|+
T Consensus 208 ~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk 286 (446)
T PF10165_consen 208 HAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRK 286 (446)
T ss_pred HHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHH
Confidence 7788888772111 11 000 01133457888888863 11 356677888999998876 35666
Q ss_pred HHHHc----------------CChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 287 PILRE----------------GVIPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 287 ~i~~~----------------g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
.+... ..-..|++++.+..+.++..+...|..+++..
T Consensus 287 ~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 287 YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 55442 35678899998888999999999999887643
No 65
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00011 Score=70.93 Aligned_cols=321 Identities=14% Similarity=0.127 Sum_probs=195.2
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHH-
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTS-QRCRRQLAQAVQPLVLMLRAPDSDHESALLALLNLAVKDEKNKI- 117 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~- 117 (397)
..+.+++++.-++..+..+|..|+..+.++++-. .+....+.+....+..+-.++|.....++..|-.+.++-..-+.
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 3455667777777788899999999999998743 12222233335556666555554355566666665542111112
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh-hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCch
Q 015988 118 KIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPD 196 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~ 196 (397)
.+-=.+.||.|-+-+...++..+...+.-|..|-.. +..+.+. -+..++-|+.+|.+++++++..+=.+|.++-..-.
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 222234555555555566888888777766665332 2233333 35678889999999999998766665555432111
Q ss_pred hHHHHHh-CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCH-HHHHHHHH---
Q 015988 197 NLSIILG-TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSL-QAREHAVG--- 271 (397)
Q Consensus 197 ~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-~v~~~a~~--- 271 (397)
+.....+ ...++.++.-+.++ .+.++..|+..|..+..-....-... -.|++..++..+.+..+ .+++.+..
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~-~s~il~~iLpc~s~~e~~~i~~~a~~~n~ 317 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLY-LSGILTAILPCLSDTEEMSIKEYAQMVNG 317 (675)
T ss_pred cCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhh-hhhhhhhcccCCCCCccccHHHHHHHHHH
Confidence 1111213 34677788777775 46788888888888765443322222 35667777777765544 34444333
Q ss_pred HHHHHhccCchhhHHHHHH-cCChHHHHHHhhcCCHHHHHHHHHHHHHh-hcCCCCCcccCcCchHHHHHHhhccCccch
Q 015988 272 ALLMMCQSDRCKYREPILR-EGVIPGLLELTIQGTPKSQTKARTLLQLL-RDSPYPRSELQPDTLENIVCNIISQIDGDE 349 (397)
Q Consensus 272 ~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~~~~~~~~~~A~~~L~~l-~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 349 (397)
.|..++... ...+. ++ ..++..|.+.+.++..+.|-.+..=+..+ .+.+.---.......+.++..|. +.++
T Consensus 318 ~l~~l~s~~--~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs---d~sd 391 (675)
T KOG0212|consen 318 LLLKLVSSE--RLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS---DRSD 391 (675)
T ss_pred HHHHHHhhh--hhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc---Cchh
Confidence 344444432 33333 44 34788889999999999998886544444 45554334555667777776664 5555
Q ss_pred hh-HHHHHHHHHHHHHhHHHhH
Q 015988 350 QS-GKAKKMLAEMVQVSMEQSL 370 (397)
Q Consensus 350 ~~-~~A~~~L~~l~~~~~~~~~ 370 (397)
.. .++..++..+++.+...|.
T Consensus 392 ~vvl~~L~lla~i~~s~~~~~~ 413 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSNSPNL 413 (675)
T ss_pred HHHHHHHHHHHHHhcCcccccH
Confidence 56 9999999999887655443
No 66
>PF05536 Neurochondrin: Neurochondrin
Probab=98.06 E-value=0.00056 Score=68.76 Aligned_cols=190 Identities=18% Similarity=0.197 Sum_probs=138.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC----CchhhhhcCCHHHHHHHHhcC-------CHHHHHHHHHHHHhhcC
Q 015988 125 LEPIISFLQSPDLNLQEYAAAALLTLSASSV----NKPFISASGAIPLLVEILRYG-------SQQAKFDAVMALSNLST 193 (397)
Q Consensus 125 i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~----~~~~i~~~g~i~~L~~lL~~~-------~~~~~~~a~~aL~nLs~ 193 (397)
++.-+.+|+..+.+-+-.++..+.++...++ .+..+.+.=+...|-++|+++ ....+.-|+..|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 4556778888876667777778888876543 234566777788999999872 35667888899999999
Q ss_pred CchhH--HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHH
Q 015988 194 HPDNL--SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVG 271 (397)
Q Consensus 194 ~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~ 271 (397)
.++.+ ..++. -||.|++.+.+..+ ..+...|+.+|..++..++++..++ +.|+++.|.+.+.+ .+...+.++.
T Consensus 87 ~~~~a~~~~~~~--~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias~~~G~~aLl-~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 87 DPELASSPQMVS--RIPLLLEILSSSSD-LETVDDALQCLLAIASSPEGAKALL-ESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred ChhhhcCHHHHH--HHHHHHHHHHcCCc-hhHHHHHHHHHHHHHcCcHhHHHHH-hcCCHHHHHHHHHh-CcchHHHHHH
Confidence 87654 44444 38999999988643 4788999999999999999999999 89999999999987 5566899999
Q ss_pred HHHHHhccCchhhHHHHHH-----cCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 272 ALLMMCQSDRCKYREPILR-----EGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 272 ~L~~L~~~~~~~~r~~i~~-----~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
++.+++.... .+.+.+ ..+++.+.+.........+..++..|..+-..
T Consensus 162 lL~~Lls~~~---~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 162 LLLNLLSRLG---QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHhcc---hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 9999987642 111111 13445555555555556666667777666333
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0037 Score=64.89 Aligned_cols=294 Identities=15% Similarity=0.139 Sum_probs=175.9
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHH
Q 015988 42 SAVHRALHLIQ-SDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 42 ~~l~~lv~lL~-s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
|..+-+...|. .+++.++.-|+..+..+..+.+......... +..|+.+|.+ +.. +..++..|..|++ +++.-..
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~PS~-R~~vL~vLYAL~S-~~~i~ke 1848 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQPSM-RARVLDVLYALSS-NGQIGKE 1848 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcChHH-HHHHHHHHHHHhc-CcHHHHH
Confidence 44555555554 4577899999999988887765555554445 7889999999 665 9999999999998 6777677
Q ss_pred HHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCC--Cchhhhh------------cCCHHHHHHHHhc--CC----
Q 015988 119 IVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSV--NKPFISA------------SGAIPLLVEILRY--GS---- 177 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~--~~~~i~~------------~g~i~~L~~lL~~--~~---- 177 (397)
..+.|++..+..++.. ..++.+..++..+..|..+.- -|..|-- .+.-+..+.++.+ ++
T Consensus 1849 A~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELi 1928 (2235)
T KOG1789|consen 1849 ALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELI 1928 (2235)
T ss_pred HHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccc
Confidence 7788888888877764 467788899999999976441 1221110 1122344444433 22
Q ss_pred --HHHHHHHHHHHHhhcCC--------c-------h------------------hHHHHHh------------CCChHHH
Q 015988 178 --QQAKFDAVMALSNLSTH--------P-------D------------------NLSIILG------------TNPIPSI 210 (397)
Q Consensus 178 --~~~~~~a~~aL~nLs~~--------~-------~------------------~~~~i~~------------~g~i~~L 210 (397)
+..+...-..+..+... + + ++..+.. .|.++.+
T Consensus 1929 Wn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~ 2008 (2235)
T KOG1789|consen 1929 WNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKV 2008 (2235)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHH
Confidence 22233333333333211 0 0 1111111 1234445
Q ss_pred HHHhhhcccChHHHHHHHHHHHHhc-CCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHH
Q 015988 211 VDLLIFCKKSSKTAEKCTSLIESLV-GFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPIL 289 (397)
Q Consensus 211 v~ll~~~~~~~~~~~~a~~~L~nL~-~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~ 289 (397)
++++....+......--..++..|. ..+.-..++- ..|.+|.++.-+...+..+-..|+++|+.|+.+. -+.+++.
T Consensus 2009 lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip-~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~--~C~~AMA 2085 (2235)
T KOG1789|consen 2009 LELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLP-SLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ--FCCDAMA 2085 (2235)
T ss_pred HHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCC-CccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc--HHHHHHh
Confidence 5555544333333333333333343 3333344443 7789999999887655445578999999999874 6777887
Q ss_pred HcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc-CCC--CCcccCcCchHHHHHHh
Q 015988 290 REGVIPGLLELTIQGTPKSQTKARTLLQLLRD-SPY--PRSELQPDTLENIVCNI 341 (397)
Q Consensus 290 ~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~-~~~--~~~~~~~~~~~~ll~~l 341 (397)
....+..+++.+...-..+- -|+.+|..+-. +.. ..+.+..|-++.++.-|
T Consensus 2086 ~l~~i~~~m~~mkK~~~~~G-LA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LL 2139 (2235)
T KOG1789|consen 2086 QLPCIDGIMKSMKKQPSLMG-LAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLL 2139 (2235)
T ss_pred ccccchhhHHHHHhcchHHH-HHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHh
Confidence 75555557776654333333 56666655533 222 44566678888887655
No 68
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.01 E-value=0.0019 Score=62.47 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=39.1
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 249 GGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 249 g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
..+..|..+++.+. ++..++.+|..+-.. ..++.|+..+.+ +.+++.|..+++.++.-
T Consensus 240 ~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d--~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 240 DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMRE--PPWARLAGEAFSLITGM 297 (410)
T ss_pred hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcC--cHHHHHHHHHHHHhhCC
Confidence 34556666665433 666666666655432 368888888854 45999999999999763
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.005 Score=64.01 Aligned_cols=302 Identities=14% Similarity=0.178 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHhhhChHHHHHHHHh------HHHHHHhhcC-CC-hhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHH
Q 015988 58 LKLEAAREIRRLTKTSQRCRRQLAQA------VQPLVLMLRA-PD-SDHESALLALLNLAVKDEKNKIKIVEAGALEPII 129 (397)
Q Consensus 58 ~~~~a~~~L~~l~~~~~~~~~~l~~~------v~~Lv~lL~~-~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~ 129 (397)
-..-++.+|.++.+.+|+....+... .+.+...|.. .+ .++.-|+..+..++. +.+.-..+++.|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 34457889999999888666555432 6677777776 22 358888888888777 677888899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCc----hhHHHH---
Q 015988 130 SFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEIL-RYGSQQAKFDAVMALSNLSTHP----DNLSII--- 201 (397)
Q Consensus 130 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~aL~nLs~~~----~~~~~i--- 201 (397)
.+|.+. +..++.++.+|..|+.+.+.-..-.+.|++..+..++ .+..+..+.+++..+..|..++ ..+-.+
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 999874 5678999999999998887666667888888877766 5667889999999999997652 111111
Q ss_pred -----Hh--CCChHHHHHHhhhcccChHH------HHHHHHHHHHhcC--------Cc----------cc----------
Q 015988 202 -----LG--TNPIPSIVDLLIFCKKSSKT------AEKCTSLIESLVG--------FD----------EG---------- 240 (397)
Q Consensus 202 -----~~--~g~i~~Lv~ll~~~~~~~~~------~~~a~~~L~nL~~--------~~----------~~---------- 240 (397)
++ ....+..|+++....+++.+ ....-..+..+.. ++ .+
T Consensus 1899 LP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1899 LPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred chHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence 11 12236677777665444321 1222222222211 00 00
Q ss_pred ----chhhhhcc------------CcHHHHHHHHhcCC--HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhh
Q 015988 241 ----RIVLTSEE------------GGVLAVVEVLENGS--LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTI 302 (397)
Q Consensus 241 ----~~~~~~~~------------g~i~~Lv~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~ 302 (397)
.+.++.+. |.+..+++++..++ ...-+....++..|.+.. +.....+-..|-+|.++..+.
T Consensus 1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~h-P~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHH-PNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhC-cchhhhCCCccchHHHHHHHH
Confidence 00111111 22344444554333 223333444445554444 356666777899999999998
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCccc-CcCchHHHHHHhhccCccchhhHHHHHHHHHHHHHh
Q 015988 303 QGTPKSQTKARTLLQLLRDSPYPRSEL-QPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVS 365 (397)
Q Consensus 303 ~~~~~~~~~A~~~L~~l~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~~~ 365 (397)
..+..+-..|..+|..++.+.-+...+ +...+.+++..|..+.+ -.+-|++.|++++++.
T Consensus 2058 ~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~---~~GLA~EalkR~~~r~ 2118 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPS---LMGLAAEALKRLMKRN 2118 (2235)
T ss_pred hcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcch---HHHHHHHHHHHHHHHh
Confidence 877777788999999999988744433 33444444443432211 1257888888887744
No 70
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00065 Score=67.08 Aligned_cols=272 Identities=13% Similarity=0.080 Sum_probs=147.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhc--ChhhHHHH
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTS-QRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVK--DEKNKIKI 119 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~--~~~~~~~i 119 (397)
+|.|-+.|.++++.+|+.++.+|+.++.+. ...-..+.+.||.|+++|++ ...++..++|+|...+.. +.. +...
T Consensus 395 ~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~-~~~~ 473 (885)
T KOG2023|consen 395 LPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS-RDEY 473 (885)
T ss_pred HHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC-hHhh
Confidence 445566777889999999999999999763 11222233349999999988 333577888988877642 111 2222
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh--cCCHHHHHHHHh---cCCHHHHHHHHHHHHhhcCC
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA--SGAIPLLVEILR---YGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~L~~lL~---~~~~~~~~~a~~aL~nLs~~ 194 (397)
+. -++..|++.+-.++..+|+.|++++.-+-.+. ...++. .-.+..|+..+. ..|.-+.+.|+++|..=...
T Consensus 474 f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A--~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 474 FK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEA--GEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred hH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 11 12334455555778999999999998875432 122211 112222222222 24667788888888875543
Q ss_pred chhHHHHHhCCChHHHH------------------------HHhhhc--ccChHHHHHHHHHHHHh----cC--Cc----
Q 015988 195 PDNLSIILGTNPIPSIV------------------------DLLIFC--KKSSKTAEKCTSLIESL----VG--FD---- 238 (397)
Q Consensus 195 ~~~~~~i~~~g~i~~Lv------------------------~ll~~~--~~~~~~~~~a~~~L~nL----~~--~~---- 238 (397)
.-|+..-++ -.+++|+ ..|..+ +-...+-..|+.+|.+. +. .+
T Consensus 551 ~Ln~~~Yiq-iLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~ 629 (885)
T KOG2023|consen 551 ALNKPAYIQ-ILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVE 629 (885)
T ss_pred hcCcHHHHH-HhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence 222222111 0112222 111111 00122334444444422 11 11
Q ss_pred ----------------------ccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHH
Q 015988 239 ----------------------EGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPG 296 (397)
Q Consensus 239 ----------------------~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~ 296 (397)
.+...++...+....+..-+...-|+||..+...|..++..-.+..+-.+ +..++.
T Consensus 630 ~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~--~~fl~~ 707 (885)
T KOG2023|consen 630 APDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL--ADFLPI 707 (885)
T ss_pred CCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH--HHHHHH
Confidence 11222222334444444555566799999999999999875322221111 233444
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 297 LLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 297 L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
|..-+......+.-+|.|++-.++..
T Consensus 708 lg~Nl~~~~isv~nNA~WAiGeia~k 733 (885)
T KOG2023|consen 708 LGANLNPENISVCNNAIWAIGEIALK 733 (885)
T ss_pred HhhcCChhhchHHHHHHHHHHHHHHH
Confidence 44444445567888888888777543
No 71
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.92 E-value=0.0018 Score=61.96 Aligned_cols=207 Identities=21% Similarity=0.171 Sum_probs=152.1
Q ss_pred CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh
Q 015988 155 VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 155 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL 234 (397)
..+..+......+.+..++-+++.+++..+.++++.+..+.+..+.+...++--.++.-|..+.....=++.|+..++.+
T Consensus 16 ~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~ 95 (371)
T PF14664_consen 16 TLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAF 95 (371)
T ss_pred hhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHH
Confidence 34444444445566665666666999999999999999999998889887765556666655433322247899999988
Q ss_pred cCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHH
Q 015988 235 VGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKART 314 (397)
Q Consensus 235 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~ 314 (397)
.....+...+ ..|.+..++.+..+.++..+..|+.+|+.++-.++ +.+...||+..|.+.+.+++..+.+..+.
T Consensus 96 l~~~~~~~~~--~~~vvralvaiae~~~D~lr~~cletL~El~l~~P----~lv~~~gG~~~L~~~l~d~~~~~~~~l~~ 169 (371)
T PF14664_consen 96 LEIKKGPKEI--PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP----ELVAECGGIRVLLRALIDGSFSISESLLD 169 (371)
T ss_pred HHhcCCcccC--CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH----HHHHHcCCHHHHHHHHHhccHhHHHHHHH
Confidence 7776666554 56899999999999999999999999999998762 35678999999999998877778888888
Q ss_pred HHHHhhcCCCCCcccCc-CchHHHHHHhhcc----Cc-cc--hhhHHHHHHHHHHHHHhHH
Q 015988 315 LLQLLRDSPYPRSELQP-DTLENIVCNIISQ----ID-GD--EQSGKAKKMLAEMVQVSME 367 (397)
Q Consensus 315 ~L~~l~~~~~~~~~~~~-~~~~~ll~~l~~~----~~-~~--~~~~~A~~~L~~l~~~~~~ 367 (397)
++-.+-++|..++-+.. -.++.++...... .. .. ++...+..++-.+.+.|..
T Consensus 170 ~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G 230 (371)
T PF14664_consen 170 TLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG 230 (371)
T ss_pred HHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888887665554 4555555544322 11 12 2337788888888888864
No 72
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.00025 Score=68.34 Aligned_cols=256 Identities=11% Similarity=0.102 Sum_probs=171.1
Q ss_pred HHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHH
Q 015988 63 AREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNL 139 (397)
Q Consensus 63 ~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~ 139 (397)
+..|..+++.-.-.|.-+... +..|++.|+.|+. +...+...+.|+.......+..+.+.|.|..|+.++.+.+..+
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaL 489 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDAL 489 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhh
Confidence 334444444322334444444 7889999998776 5566778899998878888999999999999999999988899
Q ss_pred HHHHHHHHHHHhcCCCCc--hhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----chhHHHHHhCC----ChHH
Q 015988 140 QEYAAAALLTLSASSVNK--PFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH----PDNLSIILGTN----PIPS 209 (397)
Q Consensus 140 ~~~a~~~L~nLs~~~~~~--~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~----~~~~~~i~~~g----~i~~ 209 (397)
|....+++..+-.++++- -.+...-++..++.+.+++...++.+++..|+|+..+ .+.+..+.... ....
T Consensus 490 qans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~ 569 (743)
T COG5369 490 QANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKR 569 (743)
T ss_pred hhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHH
Confidence 999999999999877654 3455778899999999999999999999999999864 22333333322 2344
Q ss_pred HHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhcc-CcHHHHHHHHh-----------------------------
Q 015988 210 IVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEE-GGVLAVVEVLE----------------------------- 259 (397)
Q Consensus 210 Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~-g~i~~Lv~lL~----------------------------- 259 (397)
|.+.++... +-.....+-+|.+++..+++.+.++.+. ..+..+.++|.
T Consensus 570 l~~k~e~~n--p~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 570 LIDKYEENN--PMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHhcC--chhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 555555543 2334556777777777776665555322 22222222221
Q ss_pred ------------------------cCCHHHHHHHHHHHHHHhccCc--------hhhHHHHHHcCChHHHHHHhhcCCHH
Q 015988 260 ------------------------NGSLQAREHAVGALLMMCQSDR--------CKYREPILREGVIPGLLELTIQGTPK 307 (397)
Q Consensus 260 ------------------------~~~~~v~~~a~~~L~~L~~~~~--------~~~r~~i~~~g~v~~L~~ll~~~~~~ 307 (397)
.++.+.-....|.+.|+..... .+-.+.+...|.-..|.++..++++.
T Consensus 648 e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~ 727 (743)
T COG5369 648 ENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLI 727 (743)
T ss_pred ccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHH
Confidence 0122344445555556533210 01123344567778888888889999
Q ss_pred HHHHHHHHHHHhh
Q 015988 308 SQTKARTLLQLLR 320 (397)
Q Consensus 308 ~~~~A~~~L~~l~ 320 (397)
+++++-.+|.++.
T Consensus 728 vrek~~taL~~l~ 740 (743)
T COG5369 728 VREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988763
No 73
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.89 E-value=2.6e-05 Score=49.22 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=37.2
Q ss_pred hhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 282 CKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 282 ~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
++.++.+++.|++|.|++++.+.++.+++.|+++|++|+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3678999999999999999999999999999999999873
No 74
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00082 Score=66.78 Aligned_cols=269 Identities=14% Similarity=0.089 Sum_probs=154.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHHcCChH
Q 015988 47 ALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVEAGALE 126 (397)
Q Consensus 47 lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~ 126 (397)
+-.-|.+.++.-..-|+.++.++... ++++.+...|+.|+--=++.+.++..|+-+|..|.+.+++ .+-..+++.
T Consensus 116 iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~ 190 (938)
T KOG1077|consen 116 IKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQ 190 (938)
T ss_pred HHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHH
Confidence 33444556777777788888777643 5666665556644332222444688888888888886664 233346778
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc-------------CCHHHHHHHHHHHHhhcC
Q 015988 127 PIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY-------------GSQQAKFDAVMALSNLST 193 (397)
Q Consensus 127 ~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~-------------~~~~~~~~a~~aL~nLs~ 193 (397)
.++.+|...+-.+...+...+-.|+...+---...-.-.+..|.++... +.|=.+...+++|.++=.
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~ 270 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT 270 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC
Confidence 8888888877666666666666666533211111111223333332221 245566677777777633
Q ss_pred --CchhHHHHHhCCChHHHHHHhhhcccChHH-----HHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHH
Q 015988 194 --HPDNLSIILGTNPIPSIVDLLIFCKKSSKT-----AEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAR 266 (397)
Q Consensus 194 --~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~-----~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~ 266 (397)
++..+..+.+ +++.++...+.+....++ ....+--.-+|+..-+.-..++ ..++..|-.+|.+....+|
T Consensus 271 ~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~NiR 346 (938)
T KOG1077|consen 271 PEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNIR 346 (938)
T ss_pred CCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccch
Confidence 2333444333 244444444432211111 1122222223443333333332 2467788888888778888
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhh-cCCHHHHHHHHHHHHHhhcCCCCCcc
Q 015988 267 EHAVGALLMMCQSDRCKYREPILREGVIPGLLELTI-QGTPKSQTKARTLLQLLRDSPYPRSE 328 (397)
Q Consensus 267 ~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~ 328 (397)
.-++..++.|+... .....+..+ ...++..|+ +.+..+|++|+.+|..+++..++..+
T Consensus 347 YLaLEsm~~L~ss~--~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~I 405 (938)
T KOG1077|consen 347 YLALESMCKLASSE--FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQI 405 (938)
T ss_pred hhhHHHHHHHHhcc--chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHH
Confidence 88888888888764 334444444 667777776 57778888888888888877665433
No 75
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0096 Score=56.41 Aligned_cols=239 Identities=18% Similarity=0.161 Sum_probs=170.3
Q ss_pred ccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-----hHHHHHH----HHh--HHHHHHhhcC-CCh------hH
Q 015988 37 SSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTS-----QRCRRQL----AQA--VQPLVLMLRA-PDS------DH 98 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~-----~~~~~~l----~~~--v~~Lv~lL~~-~~~------~~ 98 (397)
..++..+++.++++|.+.+.++-...+..++.++..+ .+--+.+ .++ ++.|++-+.. .+. -.
T Consensus 120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv 199 (536)
T KOG2734|consen 120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV 199 (536)
T ss_pred HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence 3478899999999999999999999999999988643 2212222 223 7778877765 221 24
Q ss_pred HHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHHhcCCC-CchhhhhcCCHHHHHHHHh-
Q 015988 99 ESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSP--DLNLQEYAAAALLTLSASSV-NKPFISASGAIPLLVEILR- 174 (397)
Q Consensus 99 ~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~L~~lL~- 174 (397)
..++..+-|+..-.+.....+++.|.+..|+.-+... -..-...|..+|.-+-.+.. ++..+....++..+++-+.
T Consensus 200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 5667788888887888899999999888888855432 22345667777777776654 7888888899998887663
Q ss_pred --cC------CHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc---cchh
Q 015988 175 --YG------SQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE---GRIV 243 (397)
Q Consensus 175 --~~------~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~---~~~~ 243 (397)
.. ..+.-++-..+|+.+-..++|+..+....+++...=+++.. ......++++|-....+++ ++..
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K---k~sr~SalkvLd~am~g~~gt~~C~k 356 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK---KVSRGSALKVLDHAMFGPEGTPNCNK 356 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH---HHhhhhHHHHHHHHHhCCCchHHHHH
Confidence 11 24567788889999999999999999977777655555553 2445788899988866665 6777
Q ss_pred hhhccCcHHHHHHHHh-cC--------C-HHHHHHHHHHHHHHhcc
Q 015988 244 LTSEEGGVLAVVEVLE-NG--------S-LQAREHAVGALLMMCQS 279 (397)
Q Consensus 244 ~~~~~g~i~~Lv~lL~-~~--------~-~~v~~~a~~~L~~L~~~ 279 (397)
++ +.++...++.+.. .+ . .+.-++.+.+|+.+-.+
T Consensus 357 fV-e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 357 FV-EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HH-HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 77 7778777777654 21 1 44566777777766443
No 76
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.73 E-value=0.00071 Score=55.76 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=105.4
Q ss_pred hhhhhcCCHHHHHHHHhcCC------HHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHH
Q 015988 158 PFISASGAIPLLVEILRYGS------QQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLI 231 (397)
Q Consensus 158 ~~i~~~g~i~~L~~lL~~~~------~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L 231 (397)
..+...+|+..|++++.++. .+....++.++.+|......-........|..++..+.....+..+...++.+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 35667899999999999876 477788999999988765544556666788889998887654678899999999
Q ss_pred HHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH
Q 015988 232 ESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR 290 (397)
Q Consensus 232 ~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~ 290 (397)
-+++.+.......+.++=.++.|+.+|+.++++++.+++..+-.|-...++.-|+.+.+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99988887766666456678999999999999999999999999977654444544443
No 77
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.73 E-value=0.00023 Score=53.07 Aligned_cols=87 Identities=25% Similarity=0.380 Sum_probs=69.1
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh
Q 015988 125 LEPIISFL-QSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILG 203 (397)
Q Consensus 125 i~~L~~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~ 203 (397)
|+.|++.| +++++.++..++.+|..+ ....+++.|+.+++++++.++..|+.+|..+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57899988 888999999998888833 23467999999999999999999999999872 3
Q ss_pred CCChHHHHHHhhhcccChHHHHHHHHHHH
Q 015988 204 TNPIPSIVDLLIFCKKSSKTAEKCTSLIE 232 (397)
Q Consensus 204 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 232 (397)
...++.|.+++.+++ +..++..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 447899999998863 4455677777763
No 78
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0066 Score=55.41 Aligned_cols=280 Identities=14% Similarity=0.119 Sum_probs=182.5
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHH--HH-h-HHHHHHhhcC-CChhHHHHHHHHHHhhhcCh
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQ--RCRRQL--AQ-A-VQPLVLMLRA-PDSDHESALLALLNLAVKDE 113 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~--~~~~~l--~~-~-v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~ 113 (397)
...++.|-.-|..++..++.-++..+.-+..+.+ ...... .+ . .+.++..+-. .+.+...|...+..++. .+
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fp 159 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FP 159 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cH
Confidence 3445556666667778888889998888887654 222222 23 2 6777777766 44567788889999988 67
Q ss_pred hhHHHHHHcCChHHH--HHhhCCCCHHHHHHHHHHHHHHhc-CCCCchhhhhcCCHHHHHHHHhc-CCHHHHHHHHHHHH
Q 015988 114 KNKIKIVEAGALEPI--ISFLQSPDLNLQEYAAAALLTLSA-SSVNKPFISASGAIPLLVEILRY-GSQQAKFDAVMALS 189 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L--~~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~aL~ 189 (397)
..-..++++.....+ ..+--..+.-.+...+..+..+.. ...........|.+..|..-|+. .+.-++.+++....
T Consensus 160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 777777776655443 223233344455556666666654 33344455568888888777765 67778889999999
Q ss_pred hhcCCchhHHHHHhCCChHHHHHHhhhcccCh--HH--HHHHHHHHHHhcCCcccchhhhhcc--CcHHHHHHHHhcCCH
Q 015988 190 NLSTHPDNLSIILGTNPIPSIVDLLIFCKKSS--KT--AEKCTSLIESLVGFDEGRIVLTSEE--GGVLAVVEVLENGSL 263 (397)
Q Consensus 190 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~--~~--~~~a~~~L~nL~~~~~~~~~~~~~~--g~i~~Lv~lL~~~~~ 263 (397)
.|+.....++.+...|.|+.+..++...+.++ +. ..--...+.+.+..+-.-.+++ +. -+|..-++++...++
T Consensus 240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaic-ealiiaidgsfEmiEmnDp 318 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAIC-EALIIAIDGSFEMIEMNDP 318 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHH-HHHHHHHHhhHHhhhcCCc
Confidence 99998888888888999999999997654332 22 1111223333333332222222 11 134555667777899
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHcC--ChHHHHHHhhcCCH-HHHHHHHHHHHHhhcCCC
Q 015988 264 QAREHAVGALLMMCQSDRCKYREPILREG--VIPGLLELTIQGTP-KSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~~~r~~i~~~g--~v~~L~~ll~~~~~-~~~~~A~~~L~~l~~~~~ 324 (397)
+.++.|+.++..+.++. ++.+.+.+.| ...+++.-..+.+. .-++.+..+|.+++....
T Consensus 319 daieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelr 380 (524)
T KOG4413|consen 319 DAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELR 380 (524)
T ss_pred hHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcccc
Confidence 99999999999999876 7787777755 34555544444444 456777889999976543
No 79
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.71 E-value=0.013 Score=57.67 Aligned_cols=254 Identities=17% Similarity=0.148 Sum_probs=166.5
Q ss_pred CCCccchhhhHHHHHHHh----------cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCC------C
Q 015988 34 SSSSSSASSAVHRALHLI----------QSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAP------D 95 (397)
Q Consensus 34 ~~~~~~~~~~l~~lv~lL----------~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~------~ 95 (397)
+-.++....++..|.+.- ...++.+...|+++|+++...++..|..+.+. .+.++..|+.. .
T Consensus 14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~ 93 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS 93 (446)
T ss_pred cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence 345556667777777654 34578999999999999999999999888874 88888888761 2
Q ss_pred hhHHHHHHHHHHhhhcChhhHHHHHHc-CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHHhcCCCCc
Q 015988 96 SDHESALLALLNLAVKDEKNKIKIVEA-GALEPIISFLQS-----------------PDLNLQEYAAAALLTLSASSVNK 157 (397)
Q Consensus 96 ~~~~~a~~~L~~L~~~~~~~~~~i~~~-g~i~~L~~lL~~-----------------~~~~~~~~a~~~L~nLs~~~~~~ 157 (397)
.+.....+.|..++......+..+++. +++..++..|.. .+.+....++.++.|+..+....
T Consensus 94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~ 173 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS 173 (446)
T ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence 257778888888887777788777764 788877776631 13345677899999998765433
Q ss_pred hhhhhcCCHHHHHHHHhc---------CCHHHHHHHHHHHHhhcCC-chh-------HHHH----HhCCChHHHHHHhhh
Q 015988 158 PFISASGAIPLLVEILRY---------GSQQAKFDAVMALSNLSTH-PDN-------LSII----LGTNPIPSIVDLLIF 216 (397)
Q Consensus 158 ~~i~~~g~i~~L~~lL~~---------~~~~~~~~a~~aL~nLs~~-~~~-------~~~i----~~~g~i~~Lv~ll~~ 216 (397)
..-...+.++.++.++.. +..+...+++.+|.|+=.. .+. ...+ .....+..|+++|..
T Consensus 174 ~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~ 253 (446)
T PF10165_consen 174 VPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDK 253 (446)
T ss_pred cchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHH
Confidence 321234556666655432 2356677888888888221 010 0000 112345666766654
Q ss_pred c----c--cChHHHHHHHHHHHHhcCCcccchhhhh----------------ccCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 217 C----K--KSSKTAEKCTSLIESLVGFDEGRIVLTS----------------EEGGVLAVVEVLENGSLQAREHAVGALL 274 (397)
Q Consensus 217 ~----~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~----------------~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 274 (397)
. . .-.......+.+|.+++...+..+..+. ....-..|++++.++.+.++..+...|.
T Consensus 254 ~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf 333 (446)
T PF10165_consen 254 RLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLF 333 (446)
T ss_pred HHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2 1 1123456667777777665443332221 2234568999999888999999999999
Q ss_pred HHhccCchhhHHHHHHc
Q 015988 275 MMCQSDRCKYREPILRE 291 (397)
Q Consensus 275 ~L~~~~~~~~r~~i~~~ 291 (397)
.||..+ -..+++.
T Consensus 334 ~Lc~~d----~~~~v~~ 346 (446)
T PF10165_consen 334 VLCKED----ASRFVKY 346 (446)
T ss_pred HHHhhh----HHHHHHH
Confidence 999764 3355553
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.017 Score=56.62 Aligned_cols=279 Identities=17% Similarity=0.110 Sum_probs=151.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhh--------HH
Q 015988 47 ALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKN--------KI 117 (397)
Q Consensus 47 lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~--------~~ 117 (397)
|-.-|++..+.++.++++.++.++..+ -.-+.+...|..|-.+|+++.. .+..|++.|..++...|.. -.
T Consensus 269 L~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEs 347 (898)
T COG5240 269 LNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVES 347 (898)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHH
Confidence 333445556789999999999988764 2223334448888888888555 6889999999998755431 11
Q ss_pred HHHHc-C--ChHHHHHhhCCCCHHHHHHHHHHHHHHhcC--CCCchhhhh-------------cCCHHHHHHHH-hcCCH
Q 015988 118 KIVEA-G--ALEPIISFLQSPDLNLQEYAAAALLTLSAS--SVNKPFISA-------------SGAIPLLVEIL-RYGSQ 178 (397)
Q Consensus 118 ~i~~~-g--~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~-------------~g~i~~L~~lL-~~~~~ 178 (397)
.+-+. . ..-++..+|+-++.+....-...+.++..+ |..|..+.+ .-.+..|...| ..|..
T Consensus 348 LIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~ 427 (898)
T COG5240 348 LISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGL 427 (898)
T ss_pred HhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccc
Confidence 12111 1 112333444444433332222222222211 111111110 01222333322 33455
Q ss_pred HHHHHHHHHHHhhcC-CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHH
Q 015988 179 QAKFDAVMALSNLST-HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEV 257 (397)
Q Consensus 179 ~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~l 257 (397)
+.+..+..+|..+.. .++.++.. ++.|+..+.++ +..++....+++|+ .. +-+.-- -...+.++..-
T Consensus 428 eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc-ey~~I~vrIL~iLG---~E--gP~a~~-P~~yvrhIyNR 495 (898)
T COG5240 428 EFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC-EYHQITVRILGILG---RE--GPRAKT-PGKYVRHIYNR 495 (898)
T ss_pred hHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc-chhHHHHHHHHHhc---cc--CCCCCC-cchHHHHHHHH
Confidence 666666666655544 34444333 34466666554 23333333333332 11 111100 11235566665
Q ss_pred HhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCc---Cch
Q 015988 258 LENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQP---DTL 334 (397)
Q Consensus 258 L~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~---~~~ 334 (397)
+--.+..+|..|+.+|...+.+.. ..+....+...|...+.+.++++|..|.-+|+++.....+..++.. +-+
T Consensus 496 ~iLEN~ivRsaAv~aLskf~ln~~----d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~pl~~sd~~~di 571 (898)
T COG5240 496 LILENNIVRSAAVQALSKFALNIS----DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEPLFSSDELGDI 571 (898)
T ss_pred HHHhhhHHHHHHHHHHHHhccCcc----ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhccccccccCCc
Confidence 555677899999999988776542 1223334455666788889999999999999999877766665554 556
Q ss_pred HHHHHHhh
Q 015988 335 ENIVCNII 342 (397)
Q Consensus 335 ~~ll~~l~ 342 (397)
|.+...+.
T Consensus 572 psle~~l~ 579 (898)
T COG5240 572 PSLELELI 579 (898)
T ss_pred chhHHhhh
Confidence 66655553
No 81
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0044 Score=60.32 Aligned_cols=269 Identities=15% Similarity=0.090 Sum_probs=169.5
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHhHHHHHHhhcC-CChhHHHHHHH----HHHhhhcCh
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQ-RCRRQLAQAVQPLVLMLRA-PDSDHESALLA----LLNLAVKDE 113 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~-~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~----L~~L~~~~~ 113 (397)
-.+.++.|-+.+...++..|..-+..|..+-..++ +.-..+.+..+-|..+|.+ ++.++..+-.+ |..+.. +|
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s-~P 243 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS-SP 243 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 34556666667777788888888888877766531 2222333337888899988 44444333333 333332 33
Q ss_pred hhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCH-HHHHHHHH---HHH
Q 015988 114 KNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQ-QAKFDAVM---ALS 189 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~a~~---aL~ 189 (397)
..- --...++.++.-+.++++.++..|+.-+.-+..-....-...-+|.+..++..+.+..+ .+++.+.. .|.
T Consensus 244 ~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 244 SSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred ccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 221 12356788888999999999998876666655443333333456777777777765544 24433332 233
Q ss_pred hhcCCchhHHHHHhCC-ChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHH
Q 015988 190 NLSTHPDNLSIILGTN-PIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREH 268 (397)
Q Consensus 190 nLs~~~~~~~~i~~~g-~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~ 268 (397)
.+......... ++.| .++.+.+.+.++ .......++..+..|-....++.... .....+.|+.-|...++++...
T Consensus 321 ~l~s~~~~~~~-id~~~ii~vl~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tLsd~sd~vvl~ 396 (675)
T KOG0212|consen 321 KLVSSERLKEE-IDYGSIIEVLTKYLSDD--REETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTLSDRSDEVVLL 396 (675)
T ss_pred HHHhhhhhccc-cchHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhhcCchhHHHHH
Confidence 44443333333 4433 567777777775 34566788988888866666655544 5667889999999899999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 269 AVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 269 a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
++..+.++|..+. .... -..+..|+++..++......++.-+++.++.
T Consensus 397 ~L~lla~i~~s~~--~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 397 ALSLLASICSSSN--SPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHHHhcCcc--cccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 9999999999763 2211 1234556666666666777777777776654
No 82
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.006 Score=63.40 Aligned_cols=256 Identities=14% Similarity=0.068 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCC
Q 015988 57 DLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPD 136 (397)
Q Consensus 57 ~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~ 136 (397)
..|..|.........++..--+. +|..++.|=+ ...+..|+..|...-.-.+=....-..-|..|.++++|++..
T Consensus 451 teQLTAFevWLd~gse~r~PPeQ----LPiVLQVLLS-QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a 525 (1387)
T KOG1517|consen 451 TEQLTAFEVWLDYGSESRTPPEQ----LPIVLQVLLS-QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA 525 (1387)
T ss_pred HHHHHHHHHHHHhccccCCChHh----cchHHHHHHH-HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch
Confidence 45666777766666543111111 2333333221 112444555554443322223344455789999999999998
Q ss_pred HHHHHHHHHHHHH--HhcCCCCchhhhhcCCHHHHHHHHhc-C--CHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHH
Q 015988 137 LNLQEYAAAALLT--LSASSVNKPFISASGAIPLLVEILRY-G--SQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSI 210 (397)
Q Consensus 137 ~~~~~~a~~~L~n--Ls~~~~~~~~i~~~g~i~~L~~lL~~-~--~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~L 210 (397)
.+++-. +..+|. |+.+..++..++..++-...+++|.. + +++-+.-|+..|..+..+ .-.++...+.+.+..-
T Consensus 526 ~ELrpi-LVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iC 604 (1387)
T KOG1517|consen 526 RELRPI-LVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGIC 604 (1387)
T ss_pred Hhhhhh-HHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHH
Confidence 887754 345554 56777888899988888777777766 3 357888888899999887 3445666677777777
Q ss_pred HHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccC---chhhHHH
Q 015988 211 VDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSD---RCKYREP 287 (397)
Q Consensus 211 v~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~---~~~~r~~ 287 (397)
+..+.++. .+-+..=++-+|..|=.+.+..+-.-.+.++...|+.+|..+.++||..|+-+|..+..+. .++....
T Consensus 605 le~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~ 683 (1387)
T KOG1517|consen 605 LEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLV 683 (1387)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 77777652 3455566677777774444433333447889999999999999999999999999987742 1122211
Q ss_pred H------------HHcCCh---HHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 288 I------------LREGVI---PGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 288 i------------~~~g~v---~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
+ .+.-+. ..++.++..+++.++...+-.|..+
T Consensus 684 ~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 684 VEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred hhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 1 222222 3677788889999988877667655
No 83
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.015 Score=55.21 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC------CCc----hhhhhcCCHH
Q 015988 98 HESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS------VNK----PFISASGAIP 167 (397)
Q Consensus 98 ~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~------~~~----~~i~~~g~i~ 167 (397)
....+.-+.-++. -|+..-.+++.++++.|+.+|...|.++....+..|.-|+-.| +.. ..+++.++++
T Consensus 101 Lhd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla 179 (536)
T KOG2734|consen 101 LHDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA 179 (536)
T ss_pred HHHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence 3345566777777 7888889999999999999999999999999999999998533 111 2455677888
Q ss_pred HHHHHHhcCC------HHHHHHHHHHHHhhcC-CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-
Q 015988 168 LLVEILRYGS------QQAKFDAVMALSNLST-HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE- 239 (397)
Q Consensus 168 ~L~~lL~~~~------~~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~- 239 (397)
.|++-+..=+ ....++++..+.|+.. .++.+..+++.|.+.-|+.=+....+......-|..+|.-+-.+..
T Consensus 180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e 259 (536)
T KOG2734|consen 180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE 259 (536)
T ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch
Confidence 8887775432 2345678888899987 4778888888877776666444433344556778888887765554
Q ss_pred cchhhhhccCcHHHHHHHHh---cC------CHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHH
Q 015988 240 GRIVLTSEEGGVLAVVEVLE---NG------SLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQT 310 (397)
Q Consensus 240 ~~~~~~~~~g~i~~Lv~lL~---~~------~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~ 310 (397)
++... ....++..+++-+. .. ..+.-++...+||.+...+ ++|..+....+++.+.=+++. .-..+.
T Consensus 260 ~~~~~-~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~--~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~ 335 (536)
T KOG2734|consen 260 NRKLL-GPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP--ANRERFLKGEGLQLMNLMLRE-KKVSRG 335 (536)
T ss_pred hhhhh-cCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh--hhhhhhhccccHHHHHHHHHH-HHHhhh
Confidence 55444 37778888877653 11 2456677888888887775 789999998888877766665 455666
Q ss_pred HHHHHHHHhhcCCC
Q 015988 311 KARTLLQLLRDSPY 324 (397)
Q Consensus 311 ~A~~~L~~l~~~~~ 324 (397)
.|.++|....-++.
T Consensus 336 SalkvLd~am~g~~ 349 (536)
T KOG2734|consen 336 SALKVLDHAMFGPE 349 (536)
T ss_pred hHHHHHHHHHhCCC
Confidence 67788877755443
No 84
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.014 Score=59.24 Aligned_cols=241 Identities=15% Similarity=0.145 Sum_probs=125.7
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
.....+.+.++++..++-+|.+|+.+..++.+..|+.-+.+ ++....+|.+ +.-+...++..+..++..+++.-..
T Consensus 140 ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f---~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 140 ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF---VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh---hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHH
Confidence 34445556666667777777777777777766654443333 3444444444 2223555666666666665555444
Q ss_pred HHHcCChHHHHHhhCC---------------CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHH
Q 015988 119 IVEAGALEPIISFLQS---------------PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFD 183 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~---------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~ 183 (397)
+-+ .++-|+..|++ .+|-++...++.|.-|..+ +++....
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~-----------------------d~daSd~ 271 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN-----------------------DADASDL 271 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC-----------------------CccHHHH
Confidence 444 44445544431 1344555555555555444 4444444
Q ss_pred HHHHHHhhcCCch---hHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhh----------hccCc
Q 015988 184 AVMALSNLSTHPD---NLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLT----------SEEGG 250 (397)
Q Consensus 184 a~~aL~nLs~~~~---~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~----------~~~g~ 250 (397)
-...|..++.+-+ |...-+-+..+..+..+. +...++..|..+|+.+..++++....+ .+..+
T Consensus 272 M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~----~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~a 347 (866)
T KOG1062|consen 272 MNDILAQVATNTDSSKNAGNAILYECVRTIMDIR----SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTA 347 (866)
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHH
Confidence 4444444443211 111111111122222211 123344555555555444433322211 01112
Q ss_pred H----HHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 251 V----LAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 251 i----~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
+ ..+++.|+.+|+.++..|+..+..|...+ ..+. .++.|+.+|...++..+...+.-+..++
T Consensus 348 vqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 348 VQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVRV------MVKELLEFLESSDEDFKADIASKIAELA 413 (866)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 2 35677788899999999999999998765 4442 3566788888877777776665444443
No 85
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.52 E-value=0.012 Score=53.47 Aligned_cols=223 Identities=15% Similarity=0.069 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHhhhcChhhHHHHHH-cCChHHHHHhhCC--CCHHHHHHHHHHHHHHhcCCCCchhhhh-cCCHHHHHHH
Q 015988 97 DHESALLALLNLAVKDEKNKIKIVE-AGALEPIISFLQS--PDLNLQEYAAAALLTLSASSVNKPFISA-SGAIPLLVEI 172 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~L~~l 172 (397)
.+.-|+.++.++.. .++.|..+.. ...-..+++++++ +..++|-+.+-++|-++.+....+.+-. ...+..|+.+
T Consensus 165 Trlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i 243 (432)
T COG5231 165 TRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI 243 (432)
T ss_pred HHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 47778899999998 5677776654 4455778888886 4678999999999999987765544332 4456677777
Q ss_pred HhcC-CHHHHHHHHHHHHhhcCC-c-hhHHHHHhCCChHHHHHHhhh-cccChHHHHHHHH---HH----HHhcCC----
Q 015988 173 LRYG-SQQAKFDAVMALSNLSTH-P-DNLSIILGTNPIPSIVDLLIF-CKKSSKTAEKCTS---LI----ESLVGF---- 237 (397)
Q Consensus 173 L~~~-~~~~~~~a~~aL~nLs~~-~-~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~a~~---~L----~nL~~~---- 237 (397)
.+.. ...+..-+++++.|+... + +.-..+...|-+..-+++|.. ...+.+++...-. .| ..|+..
T Consensus 244 Vk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~ 323 (432)
T COG5231 244 VKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 7654 356777888999999873 2 222333334434444554443 3333333211111 11 111111
Q ss_pred -----------c---------ccchhhhh-ccCcHHHHHHHHhcCCHH-HHHHHHHHHHHHhccCchhhHHHHHHcCChH
Q 015988 238 -----------D---------EGRIVLTS-EEGGVLAVVEVLENGSLQ-AREHAVGALLMMCQSDRCKYREPILREGVIP 295 (397)
Q Consensus 238 -----------~---------~~~~~~~~-~~g~i~~Lv~lL~~~~~~-v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~ 295 (397)
+ .+...+.. ....+..|.++++..++. ...-|+.=+..+.+.. ++++..+.+.|+=+
T Consensus 324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~Kyg~k~ 402 (432)
T COG5231 324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS-PEINAVLSKYGVKE 402 (432)
T ss_pred HHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC-chHHHHHHHhhhHH
Confidence 1 12222221 123477888899876655 3344667777777766 58999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 296 GLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 296 ~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
.+..++.+++++++..|..+++.|..
T Consensus 403 ~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 403 IIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999887743
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.51 E-value=0.045 Score=53.11 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=73.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhC
Q 015988 125 LEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGT 204 (397)
Q Consensus 125 i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~ 204 (397)
+..|+..|.+.++.++..++.+|..+ ...+..+.|+.+|.+.++.++..++.++.. ...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~ 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRH 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hcc
Confidence 66677777777776777666666532 344566677777777777777666655544 111
Q ss_pred CChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015988 205 NPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMM 276 (397)
Q Consensus 205 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 276 (397)
...+.+..+|++ ++..+...|+.+|..+ .....++.|...+.+.++.|+..|+..+..+
T Consensus 147 ~~~~~L~~~L~d--~d~~Vra~A~raLG~l-----------~~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 147 DPGPALEAALTH--EDALVRAAALRALGEL-----------PRRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ChHHHHHHHhcC--CCHHHHHHHHHHHHhh-----------ccccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 234566666654 2456667777777643 1334556666667777777777777776555
No 87
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.47 E-value=0.0097 Score=56.42 Aligned_cols=187 Identities=21% Similarity=0.224 Sum_probs=134.3
Q ss_pred hHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh
Q 015988 83 AVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS 161 (397)
Q Consensus 83 ~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 161 (397)
.++.++..+.+++. ++..+...+..+.. .-.++.+..++...++.++..++.+|..+ .
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 37778888877533 56667766555433 34688899999999999999998866655 2
Q ss_pred hcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcc----------cChHHHHHHHHH
Q 015988 162 ASGAIPLLVEILR-YGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCK----------KSSKTAEKCTSL 230 (397)
Q Consensus 162 ~~g~i~~L~~lL~-~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~----------~~~~~~~~a~~~ 230 (397)
....++.|+..+. +++..++..++++|..+-.. ..+..++..+.+.. +...++..+...
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 3567899999998 58999999999998886542 23566666666532 111234445555
Q ss_pred HHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHH
Q 015988 231 IESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQT 310 (397)
Q Consensus 231 L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~ 310 (397)
|..+ .+...++.+..++...+..++..+..+|..+...+ ..+.+.+.+.+.+.+..++.
T Consensus 173 l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~ 231 (335)
T COG1413 173 LGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRK 231 (335)
T ss_pred HHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHH
Confidence 5432 24557889999999988999999999999988753 34567778888888888888
Q ss_pred HHHHHHHHhhc
Q 015988 311 KARTLLQLLRD 321 (397)
Q Consensus 311 ~A~~~L~~l~~ 321 (397)
.++..|..+..
T Consensus 232 ~~~~~l~~~~~ 242 (335)
T COG1413 232 AALLALGEIGD 242 (335)
T ss_pred HHHHHhcccCc
Confidence 88877765543
No 88
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.033 Score=55.12 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhc
Q 015988 138 NLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFC 217 (397)
Q Consensus 138 ~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~ 217 (397)
..+..++..+..++...+.+-...-+..+|.+.+.|.+..++++..+..+|..++..-+|... .. .++.|++-+..+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~--~ip~Lld~l~dp 345 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QK--IIPTLLDALADP 345 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HH--HHHHHHHHhcCc
Confidence 456778888888887777667777899999999999999999999999999999987666552 22 357777777765
Q ss_pred ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhccCchhhHHHHHH--c
Q 015988 218 KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE----NGSLQAREHAVGALLMMCQSDRCKYREPILR--E 291 (397)
Q Consensus 218 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~----~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~--~ 291 (397)
.. -..+++..|..-..-.. + +.-.+..++.+|. ..+..++..++.++.|+|.-- +-.+.+.. .
T Consensus 346 ~~---~~~e~~~~L~~ttFV~~-----V-~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv--eDp~~lapfl~ 414 (569)
T KOG1242|consen 346 SC---YTPECLDSLGATTFVAE-----V-DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV--EDPKDLAPFLP 414 (569)
T ss_pred cc---chHHHHHhhcceeeeee-----e-cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh--cCHHHHhhhHH
Confidence 31 12455555442211111 1 2233445555554 456778899999999999865 22334433 3
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHh
Q 015988 292 GVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNI 341 (397)
Q Consensus 292 g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l 341 (397)
..+|-|-..+.+..|++|.-+..+|..+-+.-..... +..++-+...+
T Consensus 415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f--~d~~p~l~e~~ 462 (569)
T KOG1242|consen 415 SLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF--DDLIPELSETL 462 (569)
T ss_pred HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc--cccccHHHHhh
Confidence 4667777777767899999999999655433221111 44555444433
No 89
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.45 E-value=0.00039 Score=43.50 Aligned_cols=39 Identities=36% Similarity=0.489 Sum_probs=36.1
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 015988 113 EKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLS 151 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs 151 (397)
++++..+.+.|++++|+.++.+++++++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347888999999999999999999999999999999987
No 90
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.026 Score=56.72 Aligned_cols=256 Identities=13% Similarity=0.123 Sum_probs=164.0
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
..+.-..++.+|++.-+=+|.+|+-.+..++.. .-+.++..+|.|++-|.++|. ++-.|+..++.|++.+|.|...
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLk---YPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLK---YPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh---hhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 344556788899999999999999999998854 334555668999999999665 7999999999999999987654
Q ss_pred HHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCC-HHHHHHHHHHHHh--hcCC
Q 015988 119 IVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGS-QQAKFDAVMALSN--LSTH 194 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~a~~aL~n--Ls~~ 194 (397)
+ -|.+.++|.. .|.=+....+..+.+|+.-++- .....+++|..++++.. ..+.+.+..++.. ++..
T Consensus 219 L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 219 L-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred c-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 4 4667777754 3444566677788888765431 12346889999998765 3455666665543 3332
Q ss_pred -chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 195 -PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGAL 273 (397)
Q Consensus 195 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 273 (397)
+++-..+.- +++.|-.++.+. ++.+..-++-++..+...... .++. --..++..|...|+.+|..|+..|
T Consensus 290 ~~d~~asiqL--CvqKLr~fieds--DqNLKYlgLlam~KI~ktHp~---~Vqa--~kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 290 MSDHSASIQL--CVQKLRIFIEDS--DQNLKYLGLLAMSKILKTHPK---AVQA--HKDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred CCCcHHHHHH--HHHHHhhhhhcC--CccHHHHHHHHHHHHhhhCHH---HHHH--hHHHHHHHhccCCchhHHHHHHHH
Confidence 222222211 245555556554 345667777777666443321 2211 224677888888999999999999
Q ss_pred HHHhccCchhhHHHHHHcCChHHHHHHhhc-CCHHHH-HHHHHHHHHhhcCCC
Q 015988 274 LMMCQSDRCKYREPILREGVIPGLLELTIQ-GTPKSQ-TKARTLLQLLRDSPY 324 (397)
Q Consensus 274 ~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~-~~~~~~-~~A~~~L~~l~~~~~ 324 (397)
..+.... ..+ + +++.|...+.. +....| +..-.++..|+.+.+
T Consensus 361 ~gmVskk--Nl~-e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 361 YGMVSKK--NLM-E-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred HHHhhhh--hHH-H-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 9998763 232 2 33444443322 222333 334456677766553
No 91
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.40 E-value=0.00026 Score=44.34 Aligned_cols=39 Identities=36% Similarity=0.512 Sum_probs=35.6
Q ss_pred CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 155 VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 155 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
+++..+.+.|+++.|++++.+++++++..++++|+||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467788899999999999999999999999999999974
No 92
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.016 Score=58.88 Aligned_cols=248 Identities=15% Similarity=0.099 Sum_probs=124.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHH
Q 015988 52 QSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKIVEAGALEPIIS 130 (397)
Q Consensus 52 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ 130 (397)
++.+.-++--|+.+|++++.. +.- ++..|.+.++|+..+ .++.+|+.+...+-+..|+.-..+ +++..+
T Consensus 117 ~s~nq~vVglAL~alg~i~s~--Ema---rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~ 186 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSP--EMA---RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRK 186 (866)
T ss_pred cCCCeeehHHHHHHhhccCCH--HHh---HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHH
Confidence 344444555555555555532 222 122333444444422 246666666666555455443333 333344
Q ss_pred hhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhc---------------CCHHHHHHHHHHHHhhcCC
Q 015988 131 FLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRY---------------GSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 131 lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~---------------~~~~~~~~a~~aL~nLs~~ 194 (397)
+|.+.+..+...++..+..++... +.-..+.+ .++.|+..|+. .+|=.+...+..|+-|..+
T Consensus 187 lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~ 264 (866)
T KOG1062|consen 187 LLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN 264 (866)
T ss_pred HHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC
Confidence 454444444444444444444321 11111111 34444444432 1455666666666666665
Q ss_pred chhHHHHHhCCChHHHHHHhhhccc----ChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHH
Q 015988 195 PDNLSIILGTNPIPSIVDLLIFCKK----SSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAV 270 (397)
Q Consensus 195 ~~~~~~i~~~g~i~~Lv~ll~~~~~----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~ 270 (397)
+......+. +.|.++....+. ...+..+|..++..+-....-+. -++..|-++|.+.+..++.-++
T Consensus 265 d~daSd~M~----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------lainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 265 DADASDLMN----DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------LAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred CccHHHHHH----HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------HHHHHHHHHhcCCccceeeeeh
Confidence 443332222 123333322211 12355556666554322222221 1456666777777777777777
Q ss_pred HHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCc
Q 015988 271 GALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRS 327 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~ 327 (397)
..|..+...++. ++.++ -..+++.+.+.++.+|++|..++..+.+..+.+.
T Consensus 335 n~L~r~V~~d~~----avqrH--r~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~ 385 (866)
T KOG1062|consen 335 NMLLRVVQQDPT----AVQRH--RSTILECLKDPDVSIKRRALELSYALVNESNVRV 385 (866)
T ss_pred hhHHhhhcCCcH----HHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH
Confidence 777777665531 11111 2456778888999999999999999888776543
No 93
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.35 E-value=0.0053 Score=54.78 Aligned_cols=175 Identities=17% Similarity=0.162 Sum_probs=106.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhhC--hHHHHHHHHh----HHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHHcCC
Q 015988 52 QSDDPDLKLEAAREIRRLTKTS--QRCRRQLAQA----VQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVEAGA 124 (397)
Q Consensus 52 ~s~~~~~~~~a~~~L~~l~~~~--~~~~~~l~~~----v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~ 124 (397)
.+.+|..|..|+..|..+..++ ......+.+. +..+...+.+ ...+...|+.++..++..-...-... -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5679999999999999999876 3333333333 3456666665 33357888888888887432222212 2356
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCC-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCch-hHHHHH
Q 015988 125 LEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGA-IPLLVEILRYGSQQAKFDAVMALSNLSTHPD-NLSIIL 202 (397)
Q Consensus 125 i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~-i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~-~~~~i~ 202 (397)
++.|+..+.+++..++..|..+|..+....... ... ++.+...+.+.++.+|..++..|..+...-. ....+.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 889999999999999999999999998754411 122 5666667788999999999999888866422 222222
Q ss_pred h----CCChHHHHHHhhhcccChHHHHHHHHHHHHh
Q 015988 203 G----TNPIPSIVDLLIFCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 203 ~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL 234 (397)
. ..+++.+...+.+. ++.++..|-.++..+
T Consensus 171 ~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA--DPEVREAARECLWAL 204 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHH
Confidence 2 22445566666654 567888888888876
No 94
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.34 E-value=0.0067 Score=54.10 Aligned_cols=185 Identities=17% Similarity=0.136 Sum_probs=110.4
Q ss_pred hcCCHHHHHHHHHHHHhhcCCc---hhHHHHHh--CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhcc
Q 015988 174 RYGSQQAKFDAVMALSNLSTHP---DNLSIILG--TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEE 248 (397)
Q Consensus 174 ~~~~~~~~~~a~~aL~nLs~~~---~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 248 (397)
.+.+.+.+..++.-|..+.... +....+.. ...+..+...+.+. +..+...|+.++..|+..-...-.-. -.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPY-AD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence 4578999999999999987644 33344433 24556666666653 46788999999999876544432222 23
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC-CCc
Q 015988 249 GGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY-PRS 327 (397)
Q Consensus 249 g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~-~~~ 327 (397)
..++.|+..+.++...+++.|..+|..++.... +-..+ .++.+.....+.++.+|..++..+..+..... ...
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 467888888888889999999999999998752 11111 15666778888999999999998888866544 334
Q ss_pred ccCcCc----hHHHHHHhhccCccchhh-HHHHHHHHHHHHHhHHHh
Q 015988 328 ELQPDT----LENIVCNIISQIDGDEQS-GKAKKMLAEMVQVSMEQS 369 (397)
Q Consensus 328 ~~~~~~----~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~~~~~~ 369 (397)
.+.... +.+.+.... .++.+.+ +.|..++..+.+.+++..
T Consensus 168 ~l~~~~~~~~l~~~l~~~l--~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLL--SDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp GG--HHHHHHHHHHHHHHH--TSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhcccchHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 444432 333333333 3666666 778888888888776654
No 95
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.32 E-value=0.058 Score=51.12 Aligned_cols=187 Identities=25% Similarity=0.265 Sum_probs=130.7
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIV 120 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~ 120 (397)
..++.+++.+.+.++.+|..++..+..+... ..++.+..+|.+.+. ++..|+.+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~---------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE---------EAVPLLRELLSDEDPRVRDAAADALGELGD---------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH---------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------
Confidence 4677888888888889999998886555422 237888999988443 68888887777643
Q ss_pred HcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHH------------HHHHHHHH
Q 015988 121 EAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQ------------AKFDAVMA 187 (397)
Q Consensus 121 ~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~------------~~~~a~~a 187 (397)
...++.|+.++. +++..++..+..+|..+-. ...+..++..+.+.... ++..+...
T Consensus 104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 104 -PEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 236888999998 5888999999999887743 33477788888765532 23333333
Q ss_pred HHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHH
Q 015988 188 LSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQARE 267 (397)
Q Consensus 188 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~ 267 (397)
|.. +.....++.+...+.... ..++..+...|..+.... ......+...+..++..++.
T Consensus 173 l~~----------~~~~~~~~~l~~~l~~~~--~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~ 231 (335)
T COG1413 173 LGE----------LGDPEAIPLLIELLEDED--ADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRK 231 (335)
T ss_pred HHH----------cCChhhhHHHHHHHhCch--HHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHH
Confidence 222 223446778888887753 467788888888654333 24567788888888888988
Q ss_pred HHHHHHHHHhcc
Q 015988 268 HAVGALLMMCQS 279 (397)
Q Consensus 268 ~a~~~L~~L~~~ 279 (397)
.++..|..+-..
T Consensus 232 ~~~~~l~~~~~~ 243 (335)
T COG1413 232 AALLALGEIGDE 243 (335)
T ss_pred HHHHHhcccCcc
Confidence 888888776543
No 96
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.054 Score=54.83 Aligned_cols=305 Identities=14% Similarity=0.164 Sum_probs=172.4
Q ss_pred CHHHHHHHHHHHHHHhhhChHH--HHHHHHh-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHH
Q 015988 55 DPDLKLEAAREIRRLTKTSQRC--RRQLAQA-VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIIS 130 (397)
Q Consensus 55 ~~~~~~~a~~~L~~l~~~~~~~--~~~l~~~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ 130 (397)
+..+|..|+.+|.+-......+ ++.=++. +...++.-.++|. ++..|..+|..+..-..+.-..-........-+.
T Consensus 187 s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~ 266 (859)
T KOG1241|consen 187 SAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLA 266 (859)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776655321100 0000111 3344444444565 6888888888887643332222223334455556
Q ss_pred hhCCCCHHHHHHHHHHHHHHhcCC------------CCch----hhh---hcCCHHHHHHHHhcC-------CHHHHHHH
Q 015988 131 FLQSPDLNLQEYAAAALLTLSASS------------VNKP----FIS---ASGAIPLLVEILRYG-------SQQAKFDA 184 (397)
Q Consensus 131 lL~~~~~~~~~~a~~~L~nLs~~~------------~~~~----~i~---~~g~i~~L~~lL~~~-------~~~~~~~a 184 (397)
-+++.++++...+...-.+++..+ .... .+. -.+++|.|+++|... +...-..|
T Consensus 267 amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAA 346 (859)
T KOG1241|consen 267 AMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAA 346 (859)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHH
Confidence 667889999888888777666321 1111 111 136788888888541 23455555
Q ss_pred HHHHHhhcCCchhHHHHHhCCChHHHHHHhhhc--ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC
Q 015988 185 VMALSNLSTHPDNLSIILGTNPIPSIVDLLIFC--KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS 262 (397)
Q Consensus 185 ~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 262 (397)
-.+|.-++.. +...+++.+..+++.. .++.+-++.+.-++..+-.+++.....-.-.++++.++.++..++
T Consensus 347 g~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 347 GVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred HHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 5566655442 2233455555555532 234455677777777665555432222224689999999999888
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC------CCcccCcCchHH
Q 015988 263 LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY------PRSELQPDTLEN 336 (397)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~------~~~~~~~~~~~~ 336 (397)
--++..+.|.|..++..-.+..-......+.++.++.=+. +.|.+-.+++|++-.|++..+ .+..+...-.+.
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ 498 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEA 498 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHH
Confidence 8889999999999998763222222223444555555443 568999999999988864321 122233344455
Q ss_pred HHHHhhc---cCccchhh--HHHHHHHHHHHHHhHH
Q 015988 337 IVCNIIS---QIDGDEQS--GKAKKMLAEMVQVSME 367 (397)
Q Consensus 337 ll~~l~~---~~~~~~~~--~~A~~~L~~l~~~~~~ 367 (397)
++..|.. ..+|.+-- -.|=+.|..+++.++.
T Consensus 499 ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 499 IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 5555532 12322222 3455677777776655
No 97
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.25 E-value=0.01 Score=48.99 Aligned_cols=121 Identities=8% Similarity=0.057 Sum_probs=93.8
Q ss_pred hHHHHHhCCChHHHHHHhhhccc----ChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcC--CHHHHHHHH
Q 015988 197 NLSIILGTNPIPSIVDLLIFCKK----SSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENG--SLQAREHAV 270 (397)
Q Consensus 197 ~~~~i~~~g~i~~Lv~ll~~~~~----~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~v~~~a~ 270 (397)
...++++.+|+..|++++.++.. ...+...++.++..|-..+-.-=..+ +...|..++.++... ++.+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHH
Confidence 35678888999999999998753 24566778888888766544222333 566788888888753 588999999
Q ss_pred HHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 271 GALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
.+|.++..++ +.....+.++=-++.|+..+...++.+|.+|..++..+
T Consensus 82 aILEs~Vl~S-~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 82 AILESIVLNS-PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHHHHhCC-HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999987 35555666677899999999999999999999988766
No 98
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.20 E-value=0.0029 Score=47.00 Aligned_cols=85 Identities=31% Similarity=0.414 Sum_probs=65.1
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHH
Q 015988 44 VHRALHLI-QSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVE 121 (397)
Q Consensus 44 l~~lv~lL-~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~ 121 (397)
++.|++.| ++.++.+|..++..|+.+... +.++.|+.++++++. ++..|+++|..+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP---------EAIPALIELLKDEDPMVRRAAARALGRIGD----------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------
Confidence 57889988 788999999999999854321 348899999987554 79999999998842
Q ss_pred cCChHHHHHhhCCC-CHHHHHHHHHHHH
Q 015988 122 AGALEPIISFLQSP-DLNLQEYAAAALL 148 (397)
Q Consensus 122 ~g~i~~L~~lL~~~-~~~~~~~a~~~L~ 148 (397)
...++.|.+++.++ +..++..|..+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34789999999876 4556888877763
No 99
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.18 E-value=0.4 Score=50.09 Aligned_cols=162 Identities=17% Similarity=0.112 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHHHhhhC-hHHHHHHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhh
Q 015988 54 DDPDLKLEAAREIRRLTKTS-QRCRRQLAQAVQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFL 132 (397)
Q Consensus 54 ~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL 132 (397)
.|.++++.|+.+++.+..+- +..+..+...++.+++-|.. +..+-.|++++..++...-..-..-.-..+++.+..++
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n-EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~fl 660 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN-EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFL 660 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHH
Confidence 36799999999988887542 12222222225555555554 44588899999998873222111111234577788888
Q ss_pred CCCCHHHHHHHHHHHHHHhcCC--CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHH
Q 015988 133 QSPDLNLQEYAAAALLTLSASS--VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSI 210 (397)
Q Consensus 133 ~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~L 210 (397)
+.....++...+.++-.|..+. ...... -.-++..+..++...+..+...|..+|..+.........-...-+++.+
T Consensus 661 rK~~r~lr~~~l~a~~~L~~~~~~~~~~~~-~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~i 739 (1233)
T KOG1824|consen 661 RKNQRALRLATLTALDKLVKNYSDSIPAEL-LEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEI 739 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHH
Confidence 7766667777776666665432 111111 1224445555566666777778888888877765444433444566666
Q ss_pred HHHhhhc
Q 015988 211 VDLLIFC 217 (397)
Q Consensus 211 v~ll~~~ 217 (397)
+.+++++
T Consensus 740 i~ll~Sp 746 (1233)
T KOG1824|consen 740 IRLLRSP 746 (1233)
T ss_pred HHHhhCc
Confidence 6666664
No 100
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.066 Score=53.92 Aligned_cols=225 Identities=15% Similarity=0.172 Sum_probs=143.4
Q ss_pred CCCCccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC--CChhHHHHHHHHHHhhh
Q 015988 33 FSSSSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA--PDSDHESALLALLNLAV 110 (397)
Q Consensus 33 ~~~~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~--~~~~~~~a~~~L~~L~~ 110 (397)
+..++.+-...+++|++.|..+|+.++..|+..++.+++.+|++.-.+. |.+..+|-+ ++-+...-+..+.+|+-
T Consensus 172 FLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA---P~ffkllttSsNNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 172 FLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA---PLFYKLLVTSSNNWVLIKLLKLFAALTP 248 (877)
T ss_pred HHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc---HHHHHHHhccCCCeehHHHHHHHhhccc
Confidence 3445566677889999999999999999999999999999888765554 666677755 22247777788888876
Q ss_pred cChhhHHHHHHcCChHHHHHhhCCCCH-HHHHHHHHHHHH--HhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHH
Q 015988 111 KDEKNKIKIVEAGALEPIISFLQSPDL-NLQEYAAAALLT--LSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMA 187 (397)
Q Consensus 111 ~~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~n--Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~a 187 (397)
-.|+.... .+++|.+++.+... .+.-.+..++.. ++..-++...- ..-++..|-.++.+.++..++-++.+
T Consensus 249 lEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~as-iqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 249 LEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSAS-IQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred cCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHH-HHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 66655444 47889998887643 233333333332 22211111111 12256777778888999999999999
Q ss_pred HHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC-HHH
Q 015988 188 LSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS-LQA 265 (397)
Q Consensus 188 L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v 265 (397)
+..+... +... ... -+.+++.|.+. +..++..|+.+|.-+..- +|... .+..|+..+...+ ...
T Consensus 323 m~KI~ktHp~~V---qa~--kdlIlrcL~Dk--D~SIRlrALdLl~gmVsk-kNl~e------IVk~LM~~~~~ae~t~y 388 (877)
T KOG1059|consen 323 MSKILKTHPKAV---QAH--KDLILRCLDDK--DESIRLRALDLLYGMVSK-KNLME------IVKTLMKHVEKAEGTNY 388 (877)
T ss_pred HHHHhhhCHHHH---HHh--HHHHHHHhccC--CchhHHHHHHHHHHHhhh-hhHHH------HHHHHHHHHHhccchhH
Confidence 9988864 3211 111 24556666664 356778899988865322 12111 3455555554433 356
Q ss_pred HHHHHHHHHHHhccC
Q 015988 266 REHAVGALLMMCQSD 280 (397)
Q Consensus 266 ~~~a~~~L~~L~~~~ 280 (397)
+...+.-+..+|+.+
T Consensus 389 rdell~~II~iCS~s 403 (877)
T KOG1059|consen 389 RDELLTRIISICSQS 403 (877)
T ss_pred HHHHHHHHHHHhhhh
Confidence 666666666677654
No 101
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.15 Score=50.34 Aligned_cols=261 Identities=17% Similarity=0.140 Sum_probs=134.3
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh
Q 015988 84 VQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA 162 (397)
Q Consensus 84 v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 162 (397)
.|.|-..|++ -+.+...+++.+..++..+ .-..+++ ..+..|-.+|.+.....+-.|.++|..|+...+.+.....
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 5666666666 4566888888888877633 1112221 2466777788898888999999999999875543322211
Q ss_pred c------------CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhcccChHHHHHHH
Q 015988 163 S------------GAIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCT 228 (397)
Q Consensus 163 ~------------g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 228 (397)
. -..-.+..+|+.|+.+....-...+-++..+ ++.+..+++ +++.|.-+.-+. ...-+
T Consensus 343 ~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~id--a~rsLsl~Fp~k------~~s~l 414 (898)
T COG5240 343 KEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAID--ALRSLSLLFPSK------KLSYL 414 (898)
T ss_pred hhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHH--HHHHHHhhCcHH------HHHHH
Confidence 1 1223344455555544444444444443332 111211121 122222211111 01122
Q ss_pred HHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc-hhhHHHHH----HcC--------ChH
Q 015988 229 SLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDR-CKYREPIL----REG--------VIP 295 (397)
Q Consensus 229 ~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~r~~i~----~~g--------~v~ 295 (397)
..|.+.-....+-. + ..-.+..+.++++ .+|+.+|.|+..||..-.... .++.-.|. ++| -+.
T Consensus 415 ~FL~~~L~~eGg~e-F--K~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvr 490 (898)
T COG5240 415 DFLGSSLLQEGGLE-F--KKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVR 490 (898)
T ss_pred HHHHHHHHhcccch-H--HHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHH
Confidence 22222211111110 0 1112445555554 357778888888887754331 12222222 111 233
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHH
Q 015988 296 GLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQ 363 (397)
Q Consensus 296 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~ 363 (397)
++..-+--.+.-+|-.|+.+|..+.-+. ...+....+..++.... .+..+.. +.|.-+|++|..
T Consensus 491 hIyNR~iLEN~ivRsaAv~aLskf~ln~--~d~~~~~sv~~~lkRcl--nD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 491 HIYNRLILENNIVRSAAVQALSKFALNI--SDVVSPQSVENALKRCL--NDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccCc--cccccHHHHHHHHHHHh--hcccHHHHHHHHHHHHhhhh
Confidence 4444333467888999999998886654 23444455566666655 2444445 788888888763
No 102
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.10 E-value=0.042 Score=54.36 Aligned_cols=263 Identities=16% Similarity=0.114 Sum_probs=154.5
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC---hHHHHHHHHhHHHHHHhhcC--CChhHHHHHHHHHHhhhcChhh
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTS---QRCRRQLAQAVQPLVLMLRA--PDSDHESALLALLNLAVKDEKN 115 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~---~~~~~~l~~~v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~~~~~ 115 (397)
...+..++.+|++..+.+|.+|+.....++.-- .+.+ .+...=..|-+-|.. ++. .-..+.++..+... -..
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~-~l~klg~iLyE~lge~ypEv-Lgsil~Ai~~I~sv-~~~ 679 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK-ELAKLGNILYENLGEDYPEV-LGSILKAICSIYSV-HRF 679 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH-HHHHHhHHHHHhcCcccHHH-HHHHHHHHHHHhhh-hcc
Confidence 345667788899999999999998877776421 1111 111111123333333 333 22223333333221 111
Q ss_pred HHHH-HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh-hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 116 KIKI-VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 116 ~~~i-~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
+..- --.|.+|.|..+|++....+..+....+..++...+...... +...--.|+.+|++-+.+++.+|..++..++.
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1100 125789999999999999999999999999887654322222 23445567888999999999999988877665
Q ss_pred CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 194 HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGAL 273 (397)
Q Consensus 194 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 273 (397)
. ++-..++..|++-|+.. +-+...+..++ ++...+.+- -..++|.|+.=-..++..++...+.++
T Consensus 760 a------iGPqdvL~~LlnnLkvq----eRq~Rvctsva-I~iVae~cg----pfsVlP~lm~dY~TPe~nVQnGvLkam 824 (975)
T COG5181 760 A------IGPQDVLDILLNNLKVQ----ERQQRVCTSVA-ISIVAEYCG----PFSVLPTLMSDYETPEANVQNGVLKAM 824 (975)
T ss_pred h------cCHHHHHHHHHhcchHH----HHHhhhhhhhh-hhhhHhhcC----chhhHHHHHhcccCchhHHHHhHHHHH
Confidence 3 11123344444444432 11122222211 111111111 112455555555567888999999988
Q ss_pred HHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 274 LMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 274 ~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
+.+-..-++..+..+ .-+.|.|-..+.+.++.-|+.|..++++++-++
T Consensus 825 ~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 825 CFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 888655322222222 346677778888889999999999999998875
No 103
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.09 E-value=0.11 Score=48.45 Aligned_cols=232 Identities=16% Similarity=0.158 Sum_probs=128.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh--hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---chhHHHHH
Q 015988 128 IISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS--ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH---PDNLSIIL 202 (397)
Q Consensus 128 L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~---~~~~~~i~ 202 (397)
.+..+.......|+.++..+.++.........+. ....+..+.+.++.+..+-+..|+.++.-++.. .+....+.
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 3444455567888999888888765443333332 234677788888888876677777776666543 23445555
Q ss_pred hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc-chhhhhccCcHHHHHHH--Hhc----------CCHHHHHHH
Q 015988 203 GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG-RIVLTSEEGGVLAVVEV--LEN----------GSLQAREHA 269 (397)
Q Consensus 203 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~~g~i~~Lv~l--L~~----------~~~~v~~~a 269 (397)
+ ...+.|...+..+.....++..|+.+|+-++..... ...+..-...+..+... .+. +++.+...|
T Consensus 128 ~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 128 E-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred H-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 5 356788888887654555556666666654332111 11111000122211111 111 124567777
Q ss_pred HHHHHHHhccCch-hhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC-CCcccCcCc---hHHHHHHhhcc
Q 015988 270 VGALLMMCQSDRC-KYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY-PRSELQPDT---LENIVCNIISQ 344 (397)
Q Consensus 270 ~~~L~~L~~~~~~-~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~---~~~ll~~l~~~ 344 (397)
+.+-.-|...-+. ... ..+ ...++.|..+|.+.+..+|-.|..+|..|-.... ...-+.... +...+..|...
T Consensus 207 L~aW~lLlt~~~~~~~~-~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~d 284 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLE-DLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATD 284 (309)
T ss_pred HHHHHHHHhcCCHHHHH-HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHh
Confidence 7666666544321 122 222 3469999999999999999999988887733221 111232223 34444445432
Q ss_pred CccchhhHHHHHHHHHHHH
Q 015988 345 IDGDEQSGKAKKMLAEMVQ 363 (397)
Q Consensus 345 ~~~~~~~~~A~~~L~~l~~ 363 (397)
+ +..+++|-++-+|...+
T Consensus 285 S-~K~~sKkdrk~qRs~Fr 302 (309)
T PF05004_consen 285 S-SKSRSKKDRKQQRSSFR 302 (309)
T ss_pred c-cCccchhHHHHHHHHHH
Confidence 2 33333555555554443
No 104
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.12 Score=50.77 Aligned_cols=270 Identities=13% Similarity=0.075 Sum_probs=160.8
Q ss_pred hhHHHHHHHhcCCCH-HHHHHHHHHHHHHhhh-ChHHHHHHHHh-HHHH-HHhhcC-CCh-hHHHHHHHHHHhhhcChhh
Q 015988 42 SAVHRALHLIQSDDP-DLKLEAAREIRRLTKT-SQRCRRQLAQA-VQPL-VLMLRA-PDS-DHESALLALLNLAVKDEKN 115 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~-~~~~~a~~~L~~l~~~-~~~~~~~l~~~-v~~L-v~lL~~-~~~-~~~~a~~~L~~L~~~~~~~ 115 (397)
|.+..++++...+.| ..+.+++.++..++.. +|+.--...+. +-.+ ..-++. ++. ++-.|+.+|.+-.. ..
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv 209 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FV 209 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HH
Confidence 445566666655544 6788888899888875 34332222233 2233 333444 443 67778888777221 11
Q ss_pred HHHHHHc----CChHHHHHhhCCCCHHHHHHHHHHHHHHhc-CCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 116 KIKIVEA----GALEPIISFLQSPDLNLQEYAAAALLTLSA-SSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 116 ~~~i~~~----g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
+..+... -.+...++.-+.++.+++..+-.+|..+-. .......+.+.-......+.+++.+.++...|...-..
T Consensus 210 ~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWst 289 (858)
T COG5215 210 QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWST 289 (858)
T ss_pred HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 2222221 224556667778899999999999988754 22333344455555666778889999988887765444
Q ss_pred hcCC-ch----hHH---------HHH---hCCChHHHHHHhhhcccC-----hHHHHHHHHHHHHhcCCcccchhhhhcc
Q 015988 191 LSTH-PD----NLS---------IIL---GTNPIPSIVDLLIFCKKS-----SKTAEKCTSLIESLVGFDEGRIVLTSEE 248 (397)
Q Consensus 191 Ls~~-~~----~~~---------~i~---~~g~i~~Lv~ll~~~~~~-----~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 248 (397)
++.. .+ .+. -+. -..++|.|+++|....++ -.....|..+|.-.+... ..
T Consensus 290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--------gd 361 (858)
T COG5215 290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--------GD 361 (858)
T ss_pred HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--------hh
Confidence 4321 00 000 011 134678899999762221 123344444444322211 11
Q ss_pred CcHHHHHHHH----hcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 249 GGVLAVVEVL----ENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 249 g~i~~Lv~lL----~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
..+.+.+.++ .+++-.-++.++.++..+-.++....+..++ +.++|.+...+.+..-.++..++|++..++++-
T Consensus 362 ~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 362 KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 2333444444 4566667899999999998887544554444 567899888888777899999999998887653
No 105
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.05 E-value=0.06 Score=54.42 Aligned_cols=259 Identities=15% Similarity=0.128 Sum_probs=156.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH-HHHHHHhH-HHHHHhhcC--CCh--hHHHHHHHHHHhhhcChhhHH
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTSQRC-RRQLAQAV-QPLVLMLRA--PDS--DHESALLALLNLAVKDEKNKI 117 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~-~~~l~~~v-~~Lv~lL~~--~~~--~~~~a~~~L~~L~~~~~~~~~ 117 (397)
+..++..|++.++.+|.+|+..+..++.-=... .+.+...+ -.|-+.|.. ++. -...|+.++.|... -.
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig-----m~ 875 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG-----MT 875 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc-----cc
Confidence 445666788889999999999888877421111 11111111 234444544 333 12334444444321 00
Q ss_pred HHH--HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh-hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 015988 118 KIV--EAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 118 ~i~--~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~ 194 (397)
.+. -.|.+|.|..+|++....+++++...+..++....-..... +...--.|+++|++-+.+++.+|..++..++..
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 111 25788999999999999999999999999987553221111 234445677888899999999999888876652
Q ss_pred chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 195 PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALL 274 (397)
Q Consensus 195 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 274 (397)
|+-..++..|++-|+.. +-+...+..++ ++...+.+.-+ .++|.|+.=-..++..++...+.+|+
T Consensus 956 ------IGPqdVLatLlnnLkvq----eRq~RvcTtva-IaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkals 1020 (1172)
T KOG0213|consen 956 ------IGPQDVLATLLNNLKVQ----ERQNRVCTTVA-IAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALS 1020 (1172)
T ss_pred ------cCHHHHHHHHHhcchHH----HHHhchhhhhh-hhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHH
Confidence 22223344444444432 11122222221 11112222111 24566666666788889999999998
Q ss_pred HHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC
Q 015988 275 MMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 275 ~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
.+-..-++..+..+- -+.|.|-..|.+.++.-|+.|..++++++-++.
T Consensus 1021 f~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1021 FMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 886654333333333 367778888888889999999999999988753
No 106
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.028 Score=55.58 Aligned_cols=261 Identities=13% Similarity=0.076 Sum_probs=152.2
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-h-HHHHHHhhcC-CCh-hHHHHHHHHHHhhhcChh
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ-A-VQPLVLMLRA-PDS-DHESALLALLNLAVKDEK 114 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~-v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~~~~ 114 (397)
......+.+.+++.+.+...|..+...++.+..+... ..+.+ . +..|-....+ ... .++.+..+....+..-.
T Consensus 131 ~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg- 207 (569)
T KOG1242|consen 131 SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG- 207 (569)
T ss_pred CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-
Confidence 3445667778888877788888888888888876521 11111 1 5555555555 221 12222222222221100
Q ss_pred hHHHHHHcCChHHHHHhhC---CCCHHHHHHHHHHHHHHhc-CCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 115 NKIKIVEAGALEPIISFLQ---SPDLNLQEYAAAALLTLSA-SSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~---~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
..++.+.++.+-.++. +....++..+..+...+-. .+.. .-.-.++.++.-+....+..+..++..|..
T Consensus 208 ---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~----aVK~llpsll~~l~~~kWrtK~aslellg~ 280 (569)
T KOG1242|consen 208 ---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY----AVKLLLPSLLGSLLEAKWRTKMASLELLGA 280 (569)
T ss_pred ---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc----hhhHhhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 1223444555544443 4456677766655555432 1111 112235555554544577888899999998
Q ss_pred hcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHH
Q 015988 191 LSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAV 270 (397)
Q Consensus 191 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~ 270 (397)
|+......-......++|.+.+.|-+. ...+++.+..+|.+++..-++-. |. -.++.|++-+..++..+ ..++
T Consensus 281 m~~~ap~qLs~~lp~iiP~lsevl~DT--~~evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~~~-~e~~ 353 (569)
T KOG1242|consen 281 MADCAPKQLSLCLPDLIPVLSEVLWDT--KPEVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSCYT-PECL 353 (569)
T ss_pred HHHhchHHHHHHHhHhhHHHHHHHccC--CHHHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCcccch-HHHH
Confidence 888766666666678899999998775 46889999999999877666554 21 36778888887655332 2333
Q ss_pred HHHHHHhccCchhhHHHHHHcCC----hHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 271 GALLMMCQSDRCKYREPILREGV----IPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~~i~~~g~----v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
..|..-+.-. .+++-. +|.|.+-+...+...++.++.+..|++.-.
T Consensus 354 ~~L~~ttFV~-------~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 354 DSLGATTFVA-------EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred Hhhcceeeee-------eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 3333222211 122233 444445555567888899999999997654
No 107
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.04 E-value=0.33 Score=49.32 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=65.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHH-HcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPIL-REGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSE 328 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~-~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~ 328 (397)
.+..++..|.++++.++.+|+..+..++..-....-+++. ..|+ .|.+.+....|++---..++++.+...-..-+.
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 4567777888999999999999999887643111112222 2343 467888888898888878887777554332222
Q ss_pred cCc--CchHHHHHHhhccCccchhh-HHHHHHHHHHHHHh
Q 015988 329 LQP--DTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQVS 365 (397)
Q Consensus 329 ~~~--~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~~ 365 (397)
+.. +.+|.+...|. +..++. +....++..|+.++
T Consensus 878 ~pPi~dllPrltPILk---nrheKVqen~IdLvg~Iadrg 914 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILK---NRHEKVQENCIDLVGTIADRG 914 (1172)
T ss_pred CCChhhhcccchHhhh---hhHHHHHHHHHHHHHHHHhcC
Confidence 222 34444443232 333344 45555566555543
No 108
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.92 E-value=0.12 Score=45.45 Aligned_cols=178 Identities=17% Similarity=0.131 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCC-----CCHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHH
Q 015988 98 HESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQS-----PDLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLV 170 (397)
Q Consensus 98 ~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~ 170 (397)
.-.|+..|..++. .++.|..|.++..--.|-.+|.- +.+-+|..+++++..|..+++ .-..+...+++|..+
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3445555555565 78999999998765556666642 356689999999999998664 334555899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh--------CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccch
Q 015988 171 EILRYGSQQAKFDAVMALSNLSTHPDNLSIILG--------TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRI 242 (397)
Q Consensus 171 ~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 242 (397)
+.+..|+...+..|..++..+-.++..-.-+.. ...+..++..+.+. ++.++.+.++++..+|+.++..+.
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~-ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM-PSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999988776654333322 22333444444333 467889999999999999987776
Q ss_pred hhhhc--cCcHH-HHHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 243 VLTSE--EGGVL-AVVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 243 ~~~~~--~g~i~-~Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
.+-.. .+.-. .+-.++ .+|+..+..-...+.|++.
T Consensus 254 aL~~clPd~Lrd~tfs~~l-~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 254 ALRSCLPDQLRDGTFSLLL-KDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHhhCcchhccchHHHHH-hcChhHHHHHHHHHHHhcc
Confidence 65310 01111 122223 3456666666666666654
No 109
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.84 E-value=0.0017 Score=49.53 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHh--hcCCHHHHHHHHHHHHHhhcCCC-CCccc
Q 015988 265 AREHAVGALLMMCQSDRCKYREPILREGVIPGLLELT--IQGTPKSQTKARTLLQLLRDSPY-PRSEL 329 (397)
Q Consensus 265 v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll--~~~~~~~~~~A~~~L~~l~~~~~-~~~~~ 329 (397)
.+...+.+|.|+|..+ ...+..+.+.|++|.++... ++.+|-++|+|..++++++.+.. .++.+
T Consensus 2 ~K~~lvrlianl~~~~-~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKN-KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3567899999999988 58999999999999999854 66889999999999999987643 55443
No 110
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.02 Score=56.98 Aligned_cols=257 Identities=17% Similarity=0.097 Sum_probs=157.6
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcC-CChhHHHHHHHHHHhhhcC-----h
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRA-PDSDHESALLALLNLAVKD-----E 113 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~-----~ 113 (397)
.+....++.+.+..|..+|.+|+..|..+.... .+.++ ....+..+++ .+.++..|+..+.-.+.-. .
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344444888888899999999999998887532 23344 6778888887 3335666655444333211 1
Q ss_pred h-hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 015988 114 K-NKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAK-FDAVMALSN 190 (397)
Q Consensus 114 ~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~-~~a~~aL~n 190 (397)
+ ...... -.++..++..++...-.++..|+.+|..+..-. +.-....+..++.. ++. .... +..-....+
T Consensus 272 e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~----lRR--kr~ahkrpk~l~s~ 344 (823)
T KOG2259|consen 272 ESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSR----LRR--KRTAHKRPKALYSS 344 (823)
T ss_pred hhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhh----hhh--hhhcccchHHHHhc
Confidence 1 111221 235666777777777777777777776664311 11000001111110 000 0000 111111111
Q ss_pred h--cC------------CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHH
Q 015988 191 L--ST------------HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVE 256 (397)
Q Consensus 191 L--s~------------~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~ 256 (397)
- ++ +++...-|+..|+.-.+++-+.+. .-+++.+|...++.|+.+...-. ...+..|++
T Consensus 345 GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvD 417 (823)
T KOG2259|consen 345 GEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFA-----VRALDFLVD 417 (823)
T ss_pred CCcccCccccccCchhhccccccccccccccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHH
Confidence 1 11 122334566778888888877663 46788999999999977654422 246788999
Q ss_pred HHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 257 VLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 257 lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
++......+|..|..+|..++.+- .++ +..++.+.+.+.+.++.+|+..-.+|.+..-+.
T Consensus 418 MfNDE~~~VRL~ai~aL~~Is~~l--~i~-----eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d 477 (823)
T KOG2259|consen 418 MFNDEIEVVRLKAIFALTMISVHL--AIR-----EEQLRQILESLEDRSVDVREALRELLKNARVSD 477 (823)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHh--eec-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCc
Confidence 998877999999999999998763 233 345778889999999999999998888765443
No 111
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.73 E-value=0.0018 Score=43.62 Aligned_cols=55 Identities=24% Similarity=0.197 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015988 137 LNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNL 191 (397)
Q Consensus 137 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nL 191 (397)
+.+|..|+.+|.+++........-....+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578889999998776544333334678899999999999999999999999875
No 112
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.63 E-value=0.0097 Score=45.36 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC---CChhHHHHHHHHHHhhhcChhhHHHHHH
Q 015988 59 KLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA---PDSDHESALLALLNLAVKDEKNKIKIVE 121 (397)
Q Consensus 59 ~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~---~~~~~~~a~~~L~~L~~~~~~~~~~i~~ 121 (397)
+...++.|.++++.++.++..+++. ++.+++...- +..+++.|++++++|+.++++|+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5667899999999999999999984 9999988765 2337999999999999999999999876
No 113
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.58 E-value=0.0042 Score=41.76 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 263 LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
+.+|..|+++|.+++.......+ -....+++.|+.++.++++.||..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~--~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ--PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH--HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999998876532222 23457899999999999999999999998754
No 114
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.51 E-value=0.19 Score=46.01 Aligned_cols=224 Identities=16% Similarity=0.135 Sum_probs=138.7
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHH-HH-h-HHHHHHhhcC--C-ChhHHHHHHHHHHhhhcChhhHHHHHH-c
Q 015988 50 LIQSDDPDLKLEAAREIRRLTKTSQRCRRQL-AQ-A-VQPLVLMLRA--P-DSDHESALLALLNLAVKDEKNKIKIVE-A 122 (397)
Q Consensus 50 lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l-~~-~-v~~Lv~lL~~--~-~~~~~~a~~~L~~L~~~~~~~~~~i~~-~ 122 (397)
++++-++..+.-|+.++.++.... +.|..+ .+ . -..+++.++. . -..|...+-++..++. ++.....+-+ -
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 334556677788888888887654 555443 22 2 5677788876 2 2258888888888888 5555544444 2
Q ss_pred CChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCCCchhhhh---cCCHHHHHHHHhcC---CHHHHHH------------
Q 015988 123 GALEPIISFLQSP-DLNLQEYAAAALLTLSASSVNKPFISA---SGAIPLLVEILRYG---SQQAKFD------------ 183 (397)
Q Consensus 123 g~i~~L~~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~---~g~i~~L~~lL~~~---~~~~~~~------------ 183 (397)
..+.-|+.+.+.. .+.+...+++++.|+... ..|..|.. .|-+.+-+++|... +.+++..
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 5566777777654 345667788888888752 23333333 34344555655431 2222211
Q ss_pred ---HHH--HHHhh-----cCC---------chhHHHHHh--CCChHHHHHHhhhcccChHHHHHHHHHHHHhc-CCcccc
Q 015988 184 ---AVM--ALSNL-----STH---------PDNLSIILG--TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV-GFDEGR 241 (397)
Q Consensus 184 ---a~~--aL~nL-----s~~---------~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~-~~~~~~ 241 (397)
+.. -+..| ... .+|.+.+.+ ..++..|.++++...++.. +.-|+.=|..+. ..++.+
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~-i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTW-ICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCce-EeeeHhhHHHHHHhCchHH
Confidence 000 01111 111 235566655 4578889999988755433 344555555554 456666
Q ss_pred hhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 242 IVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 242 ~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
..+. ..|+=..+++++.+++++++-.|+.++..+-.
T Consensus 393 ~vl~-Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 393 AVLS-KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHH-HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 6655 89999999999999999999999999887654
No 115
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.46 E-value=0.11 Score=46.42 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCC-----HHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHH
Q 015988 140 QEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGS-----QQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVD 212 (397)
Q Consensus 140 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~-----~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ 212 (397)
..+|+..|-.++.+++.|..+.+....-.|..+|+..+ +..|..+++.+..|... .+....+...++++..++
T Consensus 67 VcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 67 VCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 45677788888999999999999888877778886543 45788899999999874 344566677899999999
Q ss_pred HhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccC-------cHHHHHH-HHhcCCHHHHHHHHHHHHHHhccCchhh
Q 015988 213 LLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEG-------GVLAVVE-VLENGSLQAREHAVGALLMMCQSDRCKY 284 (397)
Q Consensus 213 ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g-------~i~~Lv~-lL~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (397)
.+..+++ --...|.-++..+-.++.|...+.+... ++..++. +...+++..-++++++-..|+.++ +.
T Consensus 147 ~me~Gse--lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--ra 222 (262)
T PF04078_consen 147 IMEFGSE--LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RA 222 (262)
T ss_dssp HHHHS-H--HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--TH
T ss_pred HHHhccH--HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HH
Confidence 9988743 3345677777777777666554442222 2333333 234578889999999999999886 67
Q ss_pred HHHHHHcCChHHHH-----HHhhcCCHHHHHHHHHHHHHhh
Q 015988 285 REPILREGVIPGLL-----ELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 285 r~~i~~~g~v~~L~-----~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
|.++.. .+|..+ .-+..+++.+++.-..++.++.
T Consensus 223 r~aL~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 223 REALRQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp HHHHHH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HHHHHH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 877764 222211 1222356777777777777653
No 116
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.11 Score=54.54 Aligned_cols=156 Identities=14% Similarity=0.136 Sum_probs=122.5
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-h-HHHHHHhhcC----CChhHHHHHHHHHHhhhcC
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ-A-VQPLVLMLRA----PDSDHESALLALLNLAVKD 112 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~-v~~Lv~lL~~----~~~~~~~a~~~L~~L~~~~ 112 (397)
..-|..|-.+++|++...+.|-.-+.+..++..-++.++.-+.+ . -...++.|.. ++..+..|+..|..++.+.
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 35678888999999998889888888888888876666655444 2 5555666654 3233666888899999988
Q ss_pred hhhHHHHHHcCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCC-CchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 113 EKNKIKIVEAGALEPIISFLQSP-DLNLQEYAAAALLTLSASSV-NKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
...+....+.+.+..=++.|.++ .+=++...+-+|..|-.+.+ +|..=...++.+.|+.+|.++.+++|..|..+|..
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 88888888999888888888885 46678888888888877554 55554578899999999999999999999999998
Q ss_pred hcCC
Q 015988 191 LSTH 194 (397)
Q Consensus 191 Ls~~ 194 (397)
+..+
T Consensus 669 fl~~ 672 (1387)
T KOG1517|consen 669 FLSN 672 (1387)
T ss_pred Hhcc
Confidence 8764
No 117
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.42 E-value=0.61 Score=41.27 Aligned_cols=178 Identities=13% Similarity=0.155 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC-----CHHHHHHHHHHHHhhcCCch--hHHHHHhCCChHHHHH
Q 015988 140 QEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG-----SQQAKFDAVMALSNLSTHPD--NLSIILGTNPIPSIVD 212 (397)
Q Consensus 140 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~a~~aL~nLs~~~~--~~~~i~~~g~i~~Lv~ 212 (397)
..+++..|..++.+.+.|..+.....--.+..+|... .+-.|..+++.|..|...++ .-..+...++++..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4578888888899999999999877666666677542 35678899999999987643 3355567899999999
Q ss_pred HhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCc-------HHH-HHHHHhcCCHHHHHHHHHHHHHHhccCchhh
Q 015988 213 LLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGG-------VLA-VVEVLENGSLQAREHAVGALLMMCQSDRCKY 284 (397)
Q Consensus 213 ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~-------i~~-Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (397)
.+..+++ .-..-|.-++..+-.++.+-.-+.+...- +.. +..+.+.+++....+++++..+|+.++ +.
T Consensus 176 ime~GSe--lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp--ra 251 (293)
T KOG3036|consen 176 IMESGSE--LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP--RA 251 (293)
T ss_pred HHhcccH--HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH--HH
Confidence 9988754 33467778888887777765554432222 222 222334578899999999999999875 67
Q ss_pred HHHHHH--c-CChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 285 REPILR--E-GVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 285 r~~i~~--~-g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
|..+.. . +.-..-...+-.+++..++.-..++.++..
T Consensus 252 r~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 252 RAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 777664 1 221222333444667777777777777654
No 118
>PRK14707 hypothetical protein; Provisional
Probab=96.41 E-value=1.2 Score=50.60 Aligned_cols=297 Identities=16% Similarity=0.120 Sum_probs=165.5
Q ss_pred hhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChHHHHHHHH-hHHHHHHhhcC-CCh-hHHHHHHHHHHhhhcChhh
Q 015988 40 ASSAVHRALHLIQS-DDPDLKLEAAREIRRLTKTSQRCRRQLAQ-AVQPLVLMLRA-PDS-DHESALLALLNLAVKDEKN 115 (397)
Q Consensus 40 ~~~~l~~lv~lL~s-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~~~~~ 115 (397)
+..+|..++.-++. .+......++..|..........+..+.. +|...++.|+. ++. ....++..|..-...++..
T Consensus 203 ~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l 282 (2710)
T PRK14707 203 DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGL 282 (2710)
T ss_pred chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHH
Confidence 33444444444432 22233444445554444433344433332 26666776665 444 4555555554433335555
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHH-HHhcCCCCchhhhhcCCHHHHHHHHhc-C-CHHHHHHHHHHHHhhc
Q 015988 116 KIKIVEAGALEPIISFLQSPDLNLQEYAAAALL-TLSASSVNKPFISASGAIPLLVEILRY-G-SQQAKFDAVMALSNLS 192 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-nLs~~~~~~~~i~~~g~i~~L~~lL~~-~-~~~~~~~a~~aL~nLs 192 (397)
+..+-..++-..|-.+-+-.+..+-..|+..|. .|..+.+.+..+ +.-.+...++-|.. + +...+..|...-..|+
T Consensus 283 ~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 283 RKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 555544444444444445555555444444443 344332333332 33334444444433 3 4455555555555667
Q ss_pred CCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHH-HhcCCcccchhhhhccCcHHHHHHHHhc-CCHHHHHHHH
Q 015988 193 THPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIE-SLVGFDEGRIVLTSEEGGVLAVVEVLEN-GSLQAREHAV 270 (397)
Q Consensus 193 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~a~ 270 (397)
.+++.++.+- ..++..+++-++.+++. .....+...|. .+..+.+-++.+ +...|..+++-|.. ++..+...++
T Consensus 362 ~d~~l~~~l~-~q~~a~~lNalsKWp~~-~~c~~aa~~LA~~l~~d~~l~~~~--~~Q~van~lnalsKWPd~~~C~~aa 437 (2710)
T PRK14707 362 ADPELRKDLE-PQGVSSVLNALSKWPDT-PVCAAAASALAEHVVDDLELRKGL--DPQGVSNALNALAKWPDLPICGQAV 437 (2710)
T ss_pred cCHhhhcccc-hhHHHHHHhhhhcCCCc-hHHHHHHHHHHHHhccChhhhhhc--chhhHHHHHHHhhcCCcchhHHHHH
Confidence 7766665554 34577788888887544 44444444444 556666666655 55667777777754 6777777777
Q ss_pred HHHHHHhccCchhhHHHHHHcCChHHHHHHhhc--CCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhc
Q 015988 271 GALLMMCQSDRCKYREPILREGVIPGLLELTIQ--GTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIIS 343 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~ 343 (397)
..|..-..++ .+.++.+--.+ |...+..+.. +++..++.|..+...+.+.++.++.|....+...+..|..
T Consensus 438 ~~lA~~la~d-~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK 510 (2710)
T PRK14707 438 SALAGRLAHD-TELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSK 510 (2710)
T ss_pred HHHHHHHhcc-HHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhc
Confidence 7777665555 46776665444 4444554444 6677778888888899988888888887777766766643
No 119
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.086 Score=53.77 Aligned_cols=202 Identities=15% Similarity=0.073 Sum_probs=137.8
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHH-HHhcCCCCchhhhhcCCHHHHHHHHhcCC-HHHHHHHHHHHH
Q 015988 112 DEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALL-TLSASSVNKPFISASGAIPLLVEILRYGS-QQAKFDAVMALS 189 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-nLs~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~a~~aL~ 189 (397)
...-+...++.|+.+.|+++.....+..+..+..+|. .+..... ....+++.+...+.... ..-...++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4445667788999999999999888888888887777 2221111 12345555555554432 334567889999
Q ss_pred hhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhc-cCcHHHHHHHHhcCCHHHHH
Q 015988 190 NLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSE-EGGVLAVVEVLENGSLQARE 267 (397)
Q Consensus 190 nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~v~~ 267 (397)
||+.. ...++.+...-.++.+-.++.. ++...+..++..+.||..++......+.+ ....+.....+...+.....
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~e--e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTE--ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhc--ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 99985 4456667775555555555544 34678899999999999888766665544 33455555556655566667
Q ss_pred HHHHHHHHHhccCchhhHHHHHH-cCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 268 HAVGALLMMCQSDRCKYREPILR-EGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 268 ~a~~~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
.+++++..++... +..+..+.+ ..+...++.++.+.++.+|........++..
T Consensus 646 A~a~a~a~I~sv~-~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 646 AGAGALAAITSVV-ENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred hccccccchhhcc-hhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 7778887777766 244543444 5678999999999999999999876655533
No 120
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.076 Score=53.01 Aligned_cols=180 Identities=19% Similarity=0.210 Sum_probs=102.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-------hHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhcChh
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTS-------QRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVKDEK 114 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~-------~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~ 114 (397)
.....++.++.++..+|..|++.++-+..-- .+.++....+...++..+++ +-.++..|+..|+.+-.-+++
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 4667788888888899999988777666532 12233333347778888877 333577777776665443333
Q ss_pred hHHHHHH--------------------------------------------------cCChHHHHHhhCCCCHHHHHHHH
Q 015988 115 NKIKIVE--------------------------------------------------AGALEPIISFLQSPDLNLQEYAA 144 (397)
Q Consensus 115 ~~~~i~~--------------------------------------------------~g~i~~L~~lL~~~~~~~~~~a~ 144 (397)
.-.+-.+ .|+-..++.-|..+-.+++..|+
T Consensus 315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHH
Confidence 2111111 11122222222222246778888
Q ss_pred HHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHH
Q 015988 145 AALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTA 224 (397)
Q Consensus 145 ~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 224 (397)
..++.|+.+.+. .....+..|+.+++++...+|..|+.+|..++..-. +++.-++.+.+.|.+. ..+++
T Consensus 395 ~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~--s~dvR 463 (823)
T KOG2259|consen 395 ASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDR--SVDVR 463 (823)
T ss_pred HHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhc--CHHHH
Confidence 888888765432 123357778888888878888888888877776522 1222344455555443 23444
Q ss_pred HHHHHHHHH
Q 015988 225 EKCTSLIES 233 (397)
Q Consensus 225 ~~a~~~L~n 233 (397)
+..-.+|.+
T Consensus 464 e~l~elL~~ 472 (823)
T KOG2259|consen 464 EALRELLKN 472 (823)
T ss_pred HHHHHHHHh
Confidence 444444443
No 121
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.34 E-value=0.029 Score=48.38 Aligned_cols=120 Identities=14% Similarity=0.046 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHhcCCcccchhhhh---------------ccCcHHHHHHHHhc------CCHHHHHHHHHHHHHHhcc
Q 015988 221 SKTAEKCTSLIESLVGFDEGRIVLTS---------------EEGGVLAVVEVLEN------GSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 221 ~~~~~~a~~~L~nL~~~~~~~~~~~~---------------~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~L~~~ 279 (397)
......++.+|.||+..++++..+++ +...+..|++.+.. ....-..+.+.++.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 34567888899999888887765442 12246778887765 2245578899999999998
Q ss_pred CchhhHHHHHH--cCC--hHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC-CCcccCc---CchHHHHHHhh
Q 015988 280 DRCKYREPILR--EGV--IPGLLELTIQGTPKSQTKARTLLQLLRDSPY-PRSELQP---DTLENIVCNII 342 (397)
Q Consensus 280 ~~~~~r~~i~~--~g~--v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~---~~~~~ll~~l~ 342 (397)
+ ++|+.+.+ .+. +..|+.++.+.+..-|.-++++++||+-... ....+.+ ..++.++..|.
T Consensus 89 ~--~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 P--EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred H--HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 5 89999986 345 7888888888877777778899999987755 4555553 45666665553
No 122
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.24 E-value=0.14 Score=53.29 Aligned_cols=237 Identities=14% Similarity=0.083 Sum_probs=131.8
Q ss_pred CccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHh-hcCCChhHHHHHHHHHHhhhcChh
Q 015988 36 SSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLM-LRAPDSDHESALLALLNLAVKDEK 114 (397)
Q Consensus 36 ~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~l-L~~~~~~~~~a~~~L~~L~~~~~~ 114 (397)
+...+...+..++++|...+.++|-.|+++|+-+.+.-++. .+...+..|+.- ++..+..+..+.-.|.....+-+.
T Consensus 41 d~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~--~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 41 DDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED--QLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred cccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH--HHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 44456788899999999999999999999999998543222 122224444433 333222122222222211111111
Q ss_pred hHHHHHHcCChHHHHHhhCC-----C-CHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHH
Q 015988 115 NKIKIVEAGALEPIISFLQS-----P-DLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMA 187 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~~-----~-~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~a 187 (397)
....+....+.+.+...+.. + ...++..++..+.-+-..- ..-.. ...+.+..++.-|.+....++..|+.+
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~ 197 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITA 197 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 12223333444444444432 2 2235666666555543311 11111 345566677777778888999999999
Q ss_pred HHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHH---hcCCHH
Q 015988 188 LSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVL---ENGSLQ 264 (397)
Q Consensus 188 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL---~~~~~~ 264 (397)
|..|+..... ..-.++++.|++=|... ........-..+|..++.....+.--- -...++.+.++. ...+++
T Consensus 198 l~~la~~~~~---~ly~~li~~Ll~~L~~~-~q~~~~rt~Iq~l~~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~dDE 272 (1233)
T KOG1824|consen 198 LGHLASSCNR---DLYVELIEHLLKGLSNR-TQMSATRTYIQCLAAICRQAGHRFGSH-LDKIVPLVADYCNKIEEDDDE 272 (1233)
T ss_pred HHHHHHhcCH---HHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHHHHHhcchhhcc-cchhhHHHHHHhcccccCcHH
Confidence 9999875211 11123344555544443 223334445555555554443332211 234678888888 667899
Q ss_pred HHHHHHHHHHHHhccC
Q 015988 265 AREHAVGALLMMCQSD 280 (397)
Q Consensus 265 v~~~a~~~L~~L~~~~ 280 (397)
.++.++.++..+-...
T Consensus 273 LrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 273 LREYCLQALESFLRRC 288 (1233)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999998876543
No 123
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.20 E-value=0.15 Score=49.86 Aligned_cols=166 Identities=16% Similarity=0.100 Sum_probs=115.8
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCH----HHHHHHHHHHHhhcCCchhHHH
Q 015988 125 LEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQ----QAKFDAVMALSNLSTHPDNLSI 200 (397)
Q Consensus 125 i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~----~~~~~a~~aL~nLs~~~~~~~~ 200 (397)
...+.+++.+++...+..++..|..++.+-.....+....++..|..+..+++. +.....+.++..|-...-....
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456778888888888888888888888877777788888999999999988753 5555666666655433221112
Q ss_pred HHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q 015988 201 ILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 201 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~ 280 (397)
.+...++..+..+..-...+..+...|+..|-++..+.....+.+.++--+..|+..+...+..++..|...+-.+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 22233444444444333333456689999999998887766666657778999999999999888888888888876554
Q ss_pred chhhHHHHHH
Q 015988 281 RCKYREPILR 290 (397)
Q Consensus 281 ~~~~r~~i~~ 290 (397)
+++-|..+.+
T Consensus 245 ~~~~R~~~~~ 254 (713)
T KOG2999|consen 245 PDDKRFEMAK 254 (713)
T ss_pred ChHHHHHHHH
Confidence 3344544444
No 124
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.19 E-value=0.059 Score=54.90 Aligned_cols=195 Identities=21% Similarity=0.179 Sum_probs=132.4
Q ss_pred CCccchhhhHHHHHHHhcCCCHHHHHHHHHHHHH-HhhhChHHHHHHHHhHHHHHHhhcC-CCh-hHHHHHHHHHHhhhc
Q 015988 35 SSSSSASSAVHRALHLIQSDDPDLKLEAAREIRR-LTKTSQRCRRQLAQAVQPLVLMLRA-PDS-DHESALLALLNLAVK 111 (397)
Q Consensus 35 ~~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~-l~~~~~~~~~~l~~~v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~ 111 (397)
....+..|+.+.|+++.....+.-+.+...+|.. +.... .+ ..+.++++.+.++. ... -...++.++.||+..
T Consensus 497 ~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~--~~--~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~ 572 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG--ER--SYEVVKPLDSALHNDEKGLENFEALEALTNLASI 572 (748)
T ss_pred cCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC--Cc--hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCc
Confidence 3445677888888888877777777777777762 11111 00 01114555555544 222 345688899999998
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCC-chhhhh-cCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 112 DEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVN-KPFISA-SGAIPLLVEILRYGSQQAKFDAVMALS 189 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~aL~ 189 (397)
++..|..+.+.-+++.+-.++..+++..+..++..+.||...+.. ...+++ ...++.....+..........+++++.
T Consensus 573 s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a 652 (748)
T KOG4151|consen 573 SESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALA 652 (748)
T ss_pred chhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcccccc
Confidence 888898999888888777788888999999999999999987753 344444 556666666666667777778888888
Q ss_pred hhcCCchh-HHHHHh-CCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 190 NLSTHPDN-LSIILG-TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 190 nLs~~~~~-~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
-++...++ +..+.+ ....+.++.++.+. +..++...+..+.|+.
T Consensus 653 ~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~--~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 653 AITSVVENHCSRILELLEWLEILVRAIQDE--DDEIQHRGLVIILNLF 698 (748)
T ss_pred chhhcchhhhhhHHHhhcchHHHHHhhcCc--hhhhhhhhhhhhhhHH
Confidence 66665444 443433 55677888888775 3466777777777653
No 125
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.16 E-value=0.19 Score=49.22 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=114.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhccc--ChHHHHHHHHHHHHhcCCcccch
Q 015988 165 AIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKK--SSKTAEKCTSLIESLVGFDEGRI 242 (397)
Q Consensus 165 ~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~nL~~~~~~~~ 242 (397)
....+.+++.+++...+..+...|..++.+......+++..++..|..++.++.. ...+...++.++..+-...-.-=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4556778888999989888999999999999999999999999999999998754 34455555665554422221111
Q ss_pred hhhhccCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 243 VLTSEEGGVLAVVEVLEN--GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 243 ~~~~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
..+ ...+|.....+..- -+..+-..|+..|.++..++. ..+..+.++--+..|+..+..++..++..|..++..+-
T Consensus 164 ~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~-~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSD-TLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh-HHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 111 23345555555432 235567889999999988873 56777888889999999999999999999999888774
Q ss_pred c
Q 015988 321 D 321 (397)
Q Consensus 321 ~ 321 (397)
.
T Consensus 242 ~ 242 (713)
T KOG2999|consen 242 R 242 (713)
T ss_pred h
Confidence 3
No 126
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.14 E-value=0.075 Score=52.64 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=97.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCC---chhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHH
Q 015988 124 ALEPIISFLQSPDLNLQEYAAAALLTLSASSVN---KPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSI 200 (397)
Q Consensus 124 ~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~---~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~ 200 (397)
.+...+.+|++..+.+++.|+.....|+.-=.+ -..+...|.+ |.+-|....+++.-..+.+++.+......+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 355677888999999999999888887642111 1111222222 33444556788887777777776654332211
Q ss_pred HH-hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 201 IL-GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 201 i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
-= -.|++|.|..+|++. +.+++......+..++.......-.-.=....-.|+++|++-+.+++.+|...+..++.
T Consensus 683 qpPi~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNK--HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhh--hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 11 258899999999985 46788888888877766544321111001245678888998899999999888887765
No 127
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.11 E-value=0.22 Score=47.00 Aligned_cols=197 Identities=12% Similarity=0.076 Sum_probs=141.8
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH-----HHHHHHh----HHHHHHhhcCCChhHHHHHHHHHHhhh
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRC-----RRQLAQA----VQPLVLMLRAPDSDHESALLALLNLAV 110 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~-----~~~l~~~----v~~Lv~lL~~~~~~~~~a~~~L~~L~~ 110 (397)
..+.+..|+..|..-+.+.|..+...+.++.+..... ...+... +..|+...+.++. ...+-..|+...+
T Consensus 74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di-al~~g~mlRec~k 152 (335)
T PF08569_consen 74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI-ALNCGDMLRECIK 152 (335)
T ss_dssp HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT-HHHHHHHHHHHTT
T ss_pred HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc-cchHHHHHHHHHh
Confidence 5577888999999999999999999999998864333 3334332 4555555555666 6666677888887
Q ss_pred cChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhc-CCCCchhhhh---cCCHHHHHHHHhcCCHHHHHHHHH
Q 015988 111 KDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSA-SSVNKPFISA---SGAIPLLVEILRYGSQQAKFDAVM 186 (397)
Q Consensus 111 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~---~g~i~~L~~lL~~~~~~~~~~a~~ 186 (397)
.+.....+.....+..+......++-++...|..++.-+-. +......+.. ...+.....+|.+++.-++.+++.
T Consensus 153 -~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 153 -HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp -SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred -hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 56677778888888889999999999999999999888643 3333233332 346677888999999999999999
Q ss_pred HHHhhcCCchhHHHHHh----CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc
Q 015988 187 ALSNLSTHPDNLSIILG----TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG 240 (397)
Q Consensus 187 aL~nLs~~~~~~~~i~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~ 240 (397)
.|..|-.+..|...+.. ..-+..++.+|++. +..++-+|..+..-.+.++..
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHhCCCC
Confidence 99999999888877665 23466778888875 467889999998876655543
No 128
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.16 Score=51.68 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=85.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
.+++..+++-..+.+|.+|..|++.++.+-- .........++...+++.+. ++..++....++-. .+....
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-----~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~ 156 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRV-----DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLV 156 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEee-----hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhc
Confidence 3444444444445555555555554433321 11222236778888887333 57777777777754 455677
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCch-hhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKP-FISASGAIPLLVEILRYGSQQAKFDAVMALSNLS 192 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~-~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs 192 (397)
.+.|.++.|-.++.++++.+..+|+.+|..+...+.+.. .......+..++..+...+.=.+...+.++.+-.
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV 230 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC
Confidence 789999999999999999999999999999986554321 1123344555555554433333333444444433
No 129
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.05 E-value=0.13 Score=45.97 Aligned_cols=218 Identities=16% Similarity=0.167 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHh---HHHHH----Hhhc---CCC-----hh-HHHHHHHHHHhhhcChhhHH
Q 015988 54 DDPDLKLEAAREIRRLTKTSQRCRRQLAQA---VQPLV----LMLR---APD-----SD-HESALLALLNLAVKDEKNKI 117 (397)
Q Consensus 54 ~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~---v~~Lv----~lL~---~~~-----~~-~~~a~~~L~~L~~~~~~~~~ 117 (397)
-+++.|..|+..|.+--...++....+=.. +..|+ +... .+. +. .-.|+..|..++. +++.|.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 367889999888876655444444444332 33332 2222 111 11 3345555666666 799999
Q ss_pred HHHHcCChHHHHHhhCCC-----CHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 118 KIVEAGALEPIISFLQSP-----DLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
.+.++...-.|..+|+.. -+.++..++++++.|...++ .-..+.+.+.+|..++.++.|+.-.+.-|..++..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999877777777643 24688899999999987543 34455589999999999999999999999999998
Q ss_pred hcCCchhHHHHHh--------CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHH-HHH----H
Q 015988 191 LSTHPDNLSIILG--------TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLA-VVE----V 257 (397)
Q Consensus 191 Ls~~~~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~-Lv~----l 257 (397)
+-.++..-..+.. ..++..++.-+... +++++.+...++...|+.++..+..+.. .+|. |-+ -
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~-pS~RLLKhIIrCYlRLsdnprar~aL~~---~LP~~Lrd~~f~~ 241 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQ-PSPRLLKHIIRCYLRLSDNPRAREALRQ---CLPDQLRDGTFSN 241 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTSTTHHHHHHH---HS-GGGTSSTTTT
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccC-CChhHHHHHHHHHHHHccCHHHHHHHHH---hCcHHHhcHHHHH
Confidence 8777654433332 22344455544443 4678999999999999999987776541 2221 111 1
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q 015988 258 LENGSLQAREHAVGALLMM 276 (397)
Q Consensus 258 L~~~~~~v~~~a~~~L~~L 276 (397)
+-.+|+.++..-...+.|+
T Consensus 242 ~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 242 ILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp GGCS-HHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 1124677777766666665
No 130
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.99 E-value=0.84 Score=40.87 Aligned_cols=191 Identities=18% Similarity=0.192 Sum_probs=117.4
Q ss_pred HHHHHHhhcC--CC-hhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC-----
Q 015988 84 VQPLVLMLRA--PD-SDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSV----- 155 (397)
Q Consensus 84 v~~Lv~lL~~--~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~----- 155 (397)
|+.|+..|.. .+ .++..|..+|..+.. + +..+.|-+..+.+-..+++.+..++..+-..+.
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~ 137 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIA 137 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccccc
Confidence 8888888877 22 257788888888763 2 234455555555555666666666666543221
Q ss_pred Cchhh--------hhcCCHHHHHHHHhcCCHH--HHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHH
Q 015988 156 NKPFI--------SASGAIPLLVEILRYGSQQ--AKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAE 225 (397)
Q Consensus 156 ~~~~i--------~~~g~i~~L~~lL~~~~~~--~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 225 (397)
+.... ...+-+..|-..|.+.+.. -++.|...|+|+... ..|..+.+-+..+ +.-.+.
T Consensus 138 ~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~--Salfrh 205 (289)
T KOG0567|consen 138 NSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADD--SALFRH 205 (289)
T ss_pred ccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccc--hHHHHH
Confidence 01111 1223355555555544322 245666666664322 1233333333332 345667
Q ss_pred HHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc--CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc
Q 015988 226 KCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN--GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ 303 (397)
Q Consensus 226 ~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~ 303 (397)
.+.-+++.| +..-.|+.|.+.|.. .++-+|..|+.+|..++.. + .++.|.+++.+
T Consensus 206 EvAfVfGQl-----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~e~~~D 262 (289)
T KOG0567|consen 206 EVAFVFGQL-----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLKEYLGD 262 (289)
T ss_pred HHHHHHhhc-----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHHHHcCC
Confidence 777777754 255678999998864 5688999999999998864 2 46777888888
Q ss_pred CCHHHHHHHHHHHHHhh
Q 015988 304 GTPKSQTKARTLLQLLR 320 (397)
Q Consensus 304 ~~~~~~~~A~~~L~~l~ 320 (397)
..+-+++.+..+|..+.
T Consensus 263 ~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 263 EERVVRESCEVALDMLE 279 (289)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 88888998888888774
No 131
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.95 E-value=0.42 Score=50.13 Aligned_cols=238 Identities=13% Similarity=0.166 Sum_probs=140.0
Q ss_pred HHHcCChHHHHHhhCC-----CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh----cCC----HHHHHHHH
Q 015988 119 IVEAGALEPIISFLQS-----PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR----YGS----QQAKFDAV 185 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~----~~~----~~~~~~a~ 185 (397)
+.+.||+..|+.++.. ...++....+..|...+.-..||..+.+.|+++.|+..|. .+. .++-+.-+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 4568999999999975 3445666777888888888889999999999999998885 333 56667777
Q ss_pred HHHHhhcCCchhH-----HHHHh-CC----C---hHHHHHHhhhc--ccChHHHHHHHHHHHHhcCCcccchhhhhccCc
Q 015988 186 MALSNLSTHPDNL-----SIILG-TN----P---IPSIVDLLIFC--KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGG 250 (397)
Q Consensus 186 ~aL~nLs~~~~~~-----~~i~~-~g----~---i~~Lv~ll~~~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~ 250 (397)
.++..|....... ..... .| . +..+++.+.+. ..+..+....+++|-+|+.+.+.....+
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L----- 267 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL----- 267 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH-----
Confidence 6666665431110 00011 11 2 44455555543 2246788999999999988776554433
Q ss_pred HHHHHHHHh--c----CCHHHHHHHHHHHHHHhcc-----CchhhHHHHHHcCChHHHHHHhhcCCH--------HHHHH
Q 015988 251 VLAVVEVLE--N----GSLQAREHAVGALLMMCQS-----DRCKYREPILREGVIPGLLELTIQGTP--------KSQTK 311 (397)
Q Consensus 251 i~~Lv~lL~--~----~~~~v~~~a~~~L~~L~~~-----~~~~~r~~i~~~g~v~~L~~ll~~~~~--------~~~~~ 311 (397)
+..+-.+++ . ..++- ..-+..++.++.. +....|+.+++.|++...++++...-| +-++.
T Consensus 268 v~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~ 346 (802)
T PF13764_consen 268 VEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF 346 (802)
T ss_pred HHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence 222222221 1 11111 1224444444332 124688999999999999998866433 23332
Q ss_pred --------HHHHHHHhhcCCC-CCcccCcCchHHHHHHhhccCccchhhHHHHHHHHHHHH
Q 015988 312 --------ARTLLQLLRDSPY-PRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQ 363 (397)
Q Consensus 312 --------A~~~L~~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~ 363 (397)
+..+|.-|+.... .+..+....+ ++++.|..-.+..+.+.-|-.+|..+..
T Consensus 347 l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 347 LSRPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred hcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 3445555555433 5666666666 5667763212222233445555554444
No 132
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.2 Score=50.98 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=114.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchh-HHHHH
Q 015988 124 ALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN-LSIIL 202 (397)
Q Consensus 124 ~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~-~~~i~ 202 (397)
.+.+|.+.++..++.++..++-.+.++ +..+.....+.|.++.|-.++.+.++.+..+|+.+|..+.....+ -....
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l 199 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL 199 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence 356788889999999998887666665 345556667899999999999999999999999999999875432 11111
Q ss_pred hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCch
Q 015988 203 GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRC 282 (397)
Q Consensus 203 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~ 282 (397)
....+..++..+....+. .+...+..+.+-...+. + .. ...+..+...|.+.++.+.-.++.++..+...-.
T Consensus 200 ~~~~~~~lL~al~ec~EW--~qi~IL~~l~~y~p~d~-~-ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~- 271 (734)
T KOG1061|consen 200 NPQLINKLLEALNECTEW--GQIFILDCLAEYVPKDS-R-EA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYLK- 271 (734)
T ss_pred cHHHHHHHHHHHHHhhhh--hHHHHHHHHHhcCCCCc-h-hH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH-
Confidence 122344455555444322 22334444443333332 1 11 2356777778888888888888888888876542
Q ss_pred hhHHHHHHcCChHHHHHHhhcCCHHHHHHHHH
Q 015988 283 KYREPILREGVIPGLLELTIQGTPKSQTKART 314 (397)
Q Consensus 283 ~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~ 314 (397)
. .....-...-+.|+.++...+ +.+.-|..
T Consensus 272 ~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLr 301 (734)
T KOG1061|consen 272 Q-VNELLFKKVAPPLVTLLSSES-EIQYVALR 301 (734)
T ss_pred H-HHHHHHHHhcccceeeecccc-hhhHHHHh
Confidence 2 223333456667777776655 66666544
No 133
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=1 Score=46.18 Aligned_cols=260 Identities=19% Similarity=0.165 Sum_probs=154.8
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhh-
Q 015988 38 SSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKN- 115 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~- 115 (397)
.......+.+-..+++.+..+..+|++++..+.... -+.+..++..|-.+++++.. .+..|++.|..++...+..
T Consensus 241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~---~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN---SRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccC---HhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 344556667777888889999999999998887543 22233357777777887655 6888999999998755442
Q ss_pred ----H---HHHHHc---CChHHHHHhhCCCCHHH----HHHHHHHHHHHhcCCCCchhhh-------------hcCCHHH
Q 015988 116 ----K---IKIVEA---GALEPIISFLQSPDLNL----QEYAAAALLTLSASSVNKPFIS-------------ASGAIPL 168 (397)
Q Consensus 116 ----~---~~i~~~---g~i~~L~~lL~~~~~~~----~~~a~~~L~nLs~~~~~~~~i~-------------~~g~i~~ 168 (397)
+ ..|-+. -...+...+|+-++... ........++++ +++|..++ ..+.+..
T Consensus 318 ~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~F 395 (865)
T KOG1078|consen 318 TVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNF 395 (865)
T ss_pred cccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHH
Confidence 1 111111 11223334444443322 222223333332 23332111 2345556
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhhcC-CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhh
Q 015988 169 LVEILRY-GSQQAKFDAVMALSNLST-HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTS 246 (397)
Q Consensus 169 L~~lL~~-~~~~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 246 (397)
|..+|+. |..+.+.....++..+.. +++.| +.++..|+..+.++. ...-+.++|.-|-.. +-....
T Consensus 396 L~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDce----~~~i~~rILhlLG~E--gP~a~~- 463 (865)
T KOG1078|consen 396 LSNMLREEGGFEFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDCE----FTQIAVRILHLLGKE--GPKAPN- 463 (865)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhcc----chHHHHHHHHHHhcc--CCCCCC-
Confidence 6666654 445666666666665554 34433 234566777777652 234555555544221 111221
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 247 EEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 247 ~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
....+..+.+.+.-.+..++..|+.+|.++...+ +..+ ..+.-.|...+.+.++++|++|...|..+.
T Consensus 464 Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~-~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 464 PSKYIRFIYNRVILENAIVRAAAVSALAKFGAQD-VVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCC-CCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3445667777666667889999999999998554 2222 345556677888899999999999999887
No 134
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.81 E-value=0.066 Score=46.18 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=66.6
Q ss_pred ChHHHHHhhCC------CCHHHHHHHHHHHHHHhcCCCCchhhhh--cCC--HHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 124 ALEPIISFLQS------PDLNLQEYAAAALLTLSASSVNKPFISA--SGA--IPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 124 ~i~~L~~lL~~------~~~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~--i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
.+..|+.++.. ....-..+.+.+|.|++...+.|..+.+ .+. +..|+.++.+.+..-|.-++++|+|+|.
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF 132 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Confidence 45566666654 1233456788999999999999998885 344 7788888888888888999999999999
Q ss_pred CchhHHHHHhC---CChHHHHHHhh
Q 015988 194 HPDNLSIILGT---NPIPSIVDLLI 215 (397)
Q Consensus 194 ~~~~~~~i~~~---g~i~~Lv~ll~ 215 (397)
+.+....+... ++++.|+--|.
T Consensus 133 d~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 133 DTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cHhHHHHhcCchhhhhHHHHHhhcc
Confidence 87777666653 34444443333
No 135
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.81 E-value=2.3 Score=44.78 Aligned_cols=235 Identities=17% Similarity=0.146 Sum_probs=130.4
Q ss_pred HHHHHHhhcC-CC-----hhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhC----CCC----HHHHHHHHHHHHH
Q 015988 84 VQPLVLMLRA-PD-----SDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQ----SPD----LNLQEYAAAALLT 149 (397)
Q Consensus 84 v~~Lv~lL~~-~~-----~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~----~~~----~~~~~~a~~~L~n 149 (397)
+..+++++.+ .+ ......+..|...++ -+.||..+.+.|+++.|+..+. .+. .++.+..+.++-.
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ 197 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIES 197 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHH
Confidence 6666666665 21 124445566666666 6899999999999999998875 333 4566666655555
Q ss_pred HhcCCC---C---chhhhhc-------CCHHHHHHHHhc----CCHHHHHHHHHHHHhhcCCchhH-HHHHhCCChHHHH
Q 015988 150 LSASSV---N---KPFISAS-------GAIPLLVEILRY----GSQQAKFDAVMALSNLSTHPDNL-SIILGTNPIPSIV 211 (397)
Q Consensus 150 Ls~~~~---~---~~~i~~~-------g~i~~L~~lL~~----~~~~~~~~a~~aL~nLs~~~~~~-~~i~~~g~i~~Lv 211 (397)
+..... . ....... .-+..+++.+.+ .++.+....+++|-+|+...+.+ +.+++. +...+
T Consensus 198 ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~l 275 (802)
T PF13764_consen 198 LLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPYL 275 (802)
T ss_pred HHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHhc
Confidence 543221 1 1100111 125555555554 36788888999999999875543 444442 22222
Q ss_pred HHhhhc---ccChHHH-HHHHHHHHHhcCCc---ccchhhhhccCcHHHHHHHHhcC--------CHHHH--------HH
Q 015988 212 DLLIFC---KKSSKTA-EKCTSLIESLVGFD---EGRIVLTSEEGGVLAVVEVLENG--------SLQAR--------EH 268 (397)
Q Consensus 212 ~ll~~~---~~~~~~~-~~a~~~L~nL~~~~---~~~~~~~~~~g~i~~Lv~lL~~~--------~~~v~--------~~ 268 (397)
++=+-+ .++.... +.-+.+..++-.+. .-+..++ +.|++...+++|... +++.+ ..
T Consensus 276 ~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il-~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~ 354 (802)
T PF13764_consen 276 DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKIL-ESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPY 354 (802)
T ss_pred ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHH
Confidence 211111 1112222 22222333332222 2344555 889999999998642 23332 34
Q ss_pred HHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcC-CHHHHHHHHHHHHHhhcCCC
Q 015988 269 AVGALLMMCQSDRCKYREPILREGVIPGLLELTIQG-TPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 269 a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~ 324 (397)
++..|.-|+.+. .-.+.+...++++.+-.+=... ...+-..|-.+|..+..++.
T Consensus 355 iL~lL~GLa~gh--~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 355 ILRLLRGLARGH--EPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred HHHHHHHHHhcC--HHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 777888888775 2233445566664444333222 34666677777777777653
No 136
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.76 E-value=0.029 Score=43.95 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=57.4
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 250 GVLAVVEVLE-NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 250 ~i~~Lv~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
.+..|+.+|. +.++.+..-|+.=|..+++.. +++|..+-+.|+-..+.+++.+.++.++..|..+++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5789999995 446777778889999999887 58898887899999999999999999999999998866
No 137
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.71 E-value=0.58 Score=44.82 Aligned_cols=213 Identities=20% Similarity=0.206 Sum_probs=122.6
Q ss_pred HhHHHHHHhhcC--CChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCC-CHHHHHHHHHHHHHH-hcCCCCc
Q 015988 82 QAVQPLVLMLRA--PDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSP-DLNLQEYAAAALLTL-SASSVNK 157 (397)
Q Consensus 82 ~~v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nL-s~~~~~~ 157 (397)
+.|..+++-+.+ +..++..++-.|..-+. ++..|..+...|.++.+++.+... +..+...+..++..+ +.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 337777777775 33467778778888777 789999999999999999999543 332444443344433 3333333
Q ss_pred hhhhhcCCHHHHHHHHhc-------C-------------------------------------CHHHHHHHHHHHHhhc-
Q 015988 158 PFISASGAIPLLVEILRY-------G-------------------------------------SQQAKFDAVMALSNLS- 192 (397)
Q Consensus 158 ~~i~~~g~i~~L~~lL~~-------~-------------------------------------~~~~~~~a~~aL~nLs- 192 (397)
..+.+.+.+..++.++.. . ....+.-|..+|..++
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~ 179 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVR 179 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHH
Confidence 333344444444555540 0 0111223444444442
Q ss_pred -----------C---CchhHHHHHhCCChHHHHHHhhh----c-----ccC-----hHHHHHHHHHHHHhcCCc-ccchh
Q 015988 193 -----------T---HPDNLSIILGTNPIPSIVDLLIF----C-----KKS-----SKTAEKCTSLIESLVGFD-EGRIV 243 (397)
Q Consensus 193 -----------~---~~~~~~~i~~~g~i~~Lv~ll~~----~-----~~~-----~~~~~~a~~~L~nL~~~~-~~~~~ 243 (397)
. .+..++.+.+.|+++.+++++.. . +.. ......++.+|-|.+... +++..
T Consensus 180 ~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~ 259 (361)
T PF07814_consen 180 SLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSY 259 (361)
T ss_pred HHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 0 12245666677889999998862 1 001 124577888888886544 34443
Q ss_pred hhhc-cCcHHHHHH-HHhc---CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHH
Q 015988 244 LTSE-EGGVLAVVE-VLEN---GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPG 296 (397)
Q Consensus 244 ~~~~-~g~i~~Lv~-lL~~---~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~ 296 (397)
...- .+....+.. ++.. ........+++++.|++.++ +..+..+...+....
T Consensus 260 l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~~ 316 (361)
T PF07814_consen 260 LLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQQ 316 (361)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhccc
Confidence 3321 222333332 2322 22445678999999999987 467777776554333
No 138
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.68 E-value=0.059 Score=40.93 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=53.9
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH--cCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 015988 249 GGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR--EGVIPGLLELTIQGTPKSQTKARTLLQL 318 (397)
Q Consensus 249 g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~ 318 (397)
..+++++..+..++..+|..|+.+|.|++... +..+.. ..+...|.+++.+.++.||..|.-+-+.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~----~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA----RGEILPYFNEIFDALCKLSADPDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 47788888898999999999999999999753 455554 5688899999999999999888554443
No 139
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.64 E-value=1.3 Score=41.17 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=109.8
Q ss_pred hhHHHHH-HHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhcCh-hhHHH
Q 015988 42 SAVHRAL-HLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVKDE-KNKIK 118 (397)
Q Consensus 42 ~~l~~lv-~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~-~~~~~ 118 (397)
+.++.++ .-+++.++.+|..|+.+|+-.+--+. +.-.+.++.+...++. ++.++..|+.++..+....+ ..-..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 5666665 67789999999999999999987653 2222236777777755 44478889998888765322 11111
Q ss_pred -------HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC----CHHHHHHHHHH
Q 015988 119 -------IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG----SQQAKFDAVMA 187 (397)
Q Consensus 119 -------i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~----~~~~~~~a~~a 187 (397)
......+..+...+.+.+++++..++..++.|-..+.... .+..+..|+-+-.++ +...+..-...
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 1123456678888888999999999999999987654332 244555665544432 34555444446
Q ss_pred HHhhcCCchhHHHHHhCCChHHHHHHhhhc
Q 015988 188 LSNLSTHPDNLSIILGTNPIPSIVDLLIFC 217 (397)
Q Consensus 188 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~ 217 (397)
+-..+......+..+....++.+-.+....
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 667777654444455555677777666654
No 140
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=3.2 Score=44.30 Aligned_cols=246 Identities=19% Similarity=0.172 Sum_probs=140.5
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-C-ChhHHHHHHHHHHhhhcChhhHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-P-DSDHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~-~~~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
.+.++.|...+++.+..+|..|+..+..++...| .....+.|...++++.. + +..-..++-+|..++...--.-..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 3566677777788889999999999999998875 44444457777776655 2 333446777888887632111111
Q ss_pred HHHcCChHHHHHhhC--------CCCHHHHHHHHHHHHHHhcCCCCc--hhhhhcCCHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 119 IVEAGALEPIISFLQ--------SPDLNLQEYAAAALLTLSASSVNK--PFISASGAIPLLVEILRYGSQQAKFDAVMAL 188 (397)
Q Consensus 119 i~~~g~i~~L~~lL~--------~~~~~~~~~a~~~L~nLs~~~~~~--~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL 188 (397)
+ ..++|.++.-|. +....+|..|+-++|.++...+.. ..+...=.-..|+..+.+....+|..|..++
T Consensus 418 l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 418 L--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred H--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 1 123444444443 123568999999999998643211 1122222222334455677888898888887
Q ss_pred HhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHH-----hcCCH
Q 015988 189 SNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVL-----ENGSL 263 (397)
Q Consensus 189 ~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL-----~~~~~ 263 (397)
........|. .-|++.+ .....- ....+.+|..-|..- +..-.|....+++.+ .+=+.
T Consensus 496 qE~VGR~~n~-----p~Gi~Li-s~~dy~--sV~~rsNcy~~l~~~---------ia~~~~y~~~~f~~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 496 QENVGRQGNF-----PHGISLI-STIDYF--SVTNRSNCYLDLCVS---------IAEFSGYREPVFNHLLTKKVCHWDV 558 (1133)
T ss_pred HHHhccCCCC-----CCchhhh-hhcchh--hhhhhhhHHHHHhHH---------HHhhhhHHHHHHHHHHhcccccccH
Confidence 6543321111 1122221 111111 012223333333321 111233444444443 34578
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHH
Q 015988 264 QAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKA 312 (397)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A 312 (397)
.+++.++++|..|+... -+....+.++.+++.....+...+.-.
T Consensus 559 ~irelaa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGV 602 (1133)
T ss_pred HHHHHHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhh
Confidence 99999999999988653 234556788888888877777666554
No 141
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.54 E-value=0.12 Score=46.56 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhc-CCCCchhhhhcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhcC-CchhHHHHHhCCChHHHHHHhh
Q 015988 139 LQEYAAAALLTLSA-SSVNKPFISASGAIPLLVEILR-YGSQQAKFDAVMALSNLST-HPDNLSIILGTNPIPSIVDLLI 215 (397)
Q Consensus 139 ~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~ll~ 215 (397)
....|+.+|--++. +.+.|..+.....+..++.+|. ...+.++..++.+|..+.. ++.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567788888775 5678888889999999999994 4678899999998777654 6889998989999999999999
Q ss_pred hcccChHHHHHHHHHHHHh
Q 015988 216 FCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 216 ~~~~~~~~~~~a~~~L~nL 234 (397)
+...+..+...++..|.-.
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 8766667777777776644
No 142
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=3.7 Score=41.88 Aligned_cols=305 Identities=13% Similarity=0.103 Sum_probs=152.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHHcCCh
Q 015988 47 ALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVEAGAL 125 (397)
Q Consensus 47 lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i 125 (397)
-+++|++.--..+.-.-.++.-+...+.+ .+...+..+..-|.+ ++..+.-|+.++.|+.. .+++..+.. -|
T Consensus 79 aV~LLss~kysEKqIGYl~is~L~n~n~d---l~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~--DI 151 (938)
T KOG1077|consen 79 AVNLLSSNKYSEKQIGYLFISLLLNENSD---LMKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD--DI 151 (938)
T ss_pred HHHHhhcCCccHHHHhHHHHHHHHhcchH---HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh--hh
Confidence 34555544333333344444444433322 222224445555555 44456778889988864 345555432 23
Q ss_pred HHHHHhhCCCC--HHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-ch-hHHHH
Q 015988 126 EPIISFLQSPD--LNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PD-NLSII 201 (397)
Q Consensus 126 ~~L~~lL~~~~--~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~-~~~~i 201 (397)
+ ++|.+++ .-++..|+-+|..|-.. +-..+-..+...+++.+|.+.+..+...+...+.-|+.. ++ .+..+
T Consensus 152 ~---KlLvS~~~~~~vkqkaALclL~L~r~--spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~ 226 (938)
T KOG1077|consen 152 P---KLLVSGSSMDYVKQKAALCLLRLFRK--SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL 226 (938)
T ss_pred H---HHHhCCcchHHHHHHHHHHHHHHHhc--CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH
Confidence 3 5555553 33555555555555332 112222345778888888887777777777777777763 32 22221
Q ss_pred HhCCChHHHHHHhhh-----------cccChHHHHHHHHHHHHhcCCcc--cchhhhhccCcHHHHHHHHhcC--CHH--
Q 015988 202 LGTNPIPSIVDLLIF-----------CKKSSKTAEKCTSLIESLVGFDE--GRIVLTSEEGGVLAVVEVLENG--SLQ-- 264 (397)
Q Consensus 202 ~~~g~i~~Lv~ll~~-----------~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~~~~g~i~~Lv~lL~~~--~~~-- 264 (397)
.. .+..|..+... .-|.+.++...+++|.++-...+ .+.+.. .+...++...+.+ +..
T Consensus 227 ~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~---evl~~iLnk~~~~~~~k~vq 301 (938)
T KOG1077|consen 227 PL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN---EVLERILNKAQEPPKSKKVQ 301 (938)
T ss_pred HH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH---HHHHHHHhccccCccccchH
Confidence 11 12222222211 12345677888888887732222 222211 2333333333311 111
Q ss_pred ---HHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHh
Q 015988 265 ---AREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNI 341 (397)
Q Consensus 265 ---v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l 341 (397)
++...+--..+++.+-+++ .+.+. ..+..|.+++.+..+.+|.-|..-++.++-+......+... ...++..|
T Consensus 302 ~~na~naVLFeaI~l~~h~D~e-~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sL 377 (938)
T KOG1077|consen 302 HSNAKNAVLFEAISLAIHLDSE-PELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSL 377 (938)
T ss_pred hhhhHHHHHHHHHHHHHHcCCc-HHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHh
Confidence 2222222233333332111 22222 24667778888888888888887777776554333333322 33333333
Q ss_pred hccCccchhhHHHHHHHHHHHHHhHHHhHHHHHhh
Q 015988 342 ISQIDGDEQSGKAKKMLAEMVQVSMEQSLRHLQQR 376 (397)
Q Consensus 342 ~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~ 376 (397)
.... ...-.++|.++|=.+++++ |.+.|+..
T Consensus 378 kter-DvSirrravDLLY~mcD~~---Nak~IV~e 408 (938)
T KOG1077|consen 378 KTER-DVSIRRRAVDLLYAMCDVS---NAKQIVAE 408 (938)
T ss_pred cccc-chHHHHHHHHHHHHHhchh---hHHHHHHH
Confidence 2111 1112288999999998887 88888854
No 143
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=1.1 Score=46.01 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCCCccchhhhHHHHHH----HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCChhH
Q 015988 23 RACSPSSSSSFSSSSSSASSAVHRALH----LIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDSDH 98 (397)
Q Consensus 23 ~~c~~~~~~~~~~~~~~~~~~l~~lv~----lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~~~ 98 (397)
+.|......++-+.+.+....+..|++ +|.+.++.+...++...++++-.+ .+...++.|+++|.++..++
T Consensus 264 ~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-----~~~~i~kaLvrLLrs~~~vq 338 (968)
T KOG1060|consen 264 RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-----QVTKIAKALVRLLRSNREVQ 338 (968)
T ss_pred ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-----HHHHHHHHHHHHHhcCCcch
Confidence 666665555544555444444445444 677889999999999999998543 12222788999998844436
Q ss_pred HHHHHHHHHhhhc
Q 015988 99 ESALLALLNLAVK 111 (397)
Q Consensus 99 ~~a~~~L~~L~~~ 111 (397)
...+..+..++..
T Consensus 339 yvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 339 YVVLQNIATISIK 351 (968)
T ss_pred hhhHHHHHHHHhc
Confidence 6655555555543
No 144
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=1.1 Score=48.03 Aligned_cols=218 Identities=17% Similarity=0.147 Sum_probs=127.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHH----HHHHhhcC-CChhHHHHHHHHHHhhhcCh-hhHHHHHHcCCh
Q 015988 52 QSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQ----PLVLMLRA-PDSDHESALLALLNLAVKDE-KNKIKIVEAGAL 125 (397)
Q Consensus 52 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~----~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~-~~~~~i~~~g~i 125 (397)
++.+..+|.++.+.|..++.. +.......+-+. .|..-.++ ...++...+.+|..+....+ +....+. . .|
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HH
Confidence 456889999999999999987 233333333333 44444444 33467777888887776544 2222222 2 34
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhc----CCCCchhhhhcCCHHHHHHHHhcC--CHHHHHHHH--HHHHhhcCCchh
Q 015988 126 EPIISFLQSPDLNLQEYAAAALLTLSA----SSVNKPFISASGAIPLLVEILRYG--SQQAKFDAV--MALSNLSTHPDN 197 (397)
Q Consensus 126 ~~L~~lL~~~~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~--~aL~nLs~~~~~ 197 (397)
+-++-.++..+...+..+..+|..+.. .++..+. ....+...+.++..+ ....+..+. -++..+.. .
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e 815 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---E 815 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---H
Confidence 444444477788888888888888872 1111111 222566666666554 333333333 23333222 1
Q ss_pred HHHHHhC----CChHHHHHHhhhcccChHHHHHHHHHHHHhcCC-cccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHH
Q 015988 198 LSIILGT----NPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGF-DEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGA 272 (397)
Q Consensus 198 ~~~i~~~----g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~ 272 (397)
...+++. +.++.+...|.+. .++++..|.+.+..++.. ++.+..-. ....++.++.+++.....++..+-..
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1222222 3344455555553 478899999999988554 44333322 23467888888887778888888888
Q ss_pred HHHHhccC
Q 015988 273 LLMMCQSD 280 (397)
Q Consensus 273 L~~L~~~~ 280 (397)
|..|++.-
T Consensus 893 lekLirkf 900 (1176)
T KOG1248|consen 893 LEKLIRKF 900 (1176)
T ss_pred HHHHHHHh
Confidence 88887754
No 145
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.31 E-value=0.19 Score=42.00 Aligned_cols=145 Identities=17% Similarity=0.066 Sum_probs=93.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh-cCCcccch
Q 015988 166 IPLLVEILR--YGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL-VGFDEGRI 242 (397)
Q Consensus 166 i~~L~~lL~--~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL-~~~~~~~~ 242 (397)
+..++..|. ..++++|..+.-++..+- +..++...+ -+-+.+-.++.....+ -...+..++..| -..++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d--~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMD--SLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCC--HHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccch--hHHHHHHHHHHHhCCCHHHHH
Confidence 334444443 356778888888887773 223333322 1223344444443332 235666777666 44555666
Q ss_pred hhhhccCcHHHHHHHHh--cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhh-cCCHH-HHHHHHHHHHH
Q 015988 243 VLTSEEGGVLAVVEVLE--NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTI-QGTPK-SQTKARTLLQL 318 (397)
Q Consensus 243 ~~~~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~-~~~~~-~~~~A~~~L~~ 318 (397)
.++..+|..+.++.++. ..+..++..++.+|..-|.. ...|..|.+.| ++.|.++.. +.++. +|..|+-.|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhc
Confidence 67768899999999999 77889999999999988876 36666666655 999999995 45555 78888766653
No 146
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.77 Score=49.15 Aligned_cols=223 Identities=15% Similarity=0.063 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHhhhcChhhHHHHHH--cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh
Q 015988 97 DHESALLALLNLAVKDEKNKIKIVE--AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR 174 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~ 174 (397)
+|..+...|..++.. +.......+ ......|..-+++.....+...+.+|..+-..-+.-..-.-...|+.++-.++
T Consensus 670 vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~K 748 (1176)
T KOG1248|consen 670 VQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLK 748 (1176)
T ss_pred HHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcc
Confidence 577777777777763 332222211 11223344444444455566666666555432121111111233444444557
Q ss_pred cCCHHHHHHHHHHHHhhcCCchhHHHHHh---CCChHHHHHHhhhc--ccChHHHHHHHHHHHHhcCCcccchhhhhccC
Q 015988 175 YGSQQAKFDAVMALSNLSTHPDNLSIILG---TNPIPSIVDLLIFC--KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEG 249 (397)
Q Consensus 175 ~~~~~~~~~a~~aL~nLs~~~~~~~~i~~---~g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g 249 (397)
..+...+.+|..+|..++.. ......++ ...+...+..+..+ .+.......-+-++..+.....+...-..-.+
T Consensus 749 e~n~~aR~~Af~lL~~i~~i-~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 749 EVNVKARRNAFALLVFIGAI-QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred cccHHHHhhHHHHHHHHHHH-HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 77888999999999988730 00000011 11344444444433 11111111112233333222221110000123
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
.+..+..+|.+.+++++..|++.+..++..-+ +..-.-...-.++.+..++++.+..++.+...+|..|...
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~p-e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFP-EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC-HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45555666778899999999999999998763 3333333345889999999988999999999999887543
No 147
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.28 E-value=0.2 Score=41.77 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=96.6
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHhhhChHHHHHHHHhH-HHHHHhhcC--CChhHHHHHHHHHHhhhcChhhHHHH
Q 015988 45 HRALHLIQ--SDDPDLKLEAAREIRRLTKTSQRCRRQLAQAV-QPLVLMLRA--PDSDHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 45 ~~lv~lL~--s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v-~~Lv~lL~~--~~~~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
..++..|. ..++++|..+..++.++. +..+..+.+.+ ..+-..+.. .+. ...++.++..+.-.-++.-..+
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~~~~~i~~~~~~~~~d~-~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEKISDFIESLLDEGEMDS-LIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCHHCCH-HHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHccccchh-HHHHHHHHHHHhCCCHHHHHHH
Confidence 34555554 357789999999998885 34555555543 333344444 455 7778888888877777776666
Q ss_pred H-HcCChHHHHHhhC--CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh-cCCHH-HHHHHHHHHHhh
Q 015988 120 V-EAGALEPIISFLQ--SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR-YGSQQ-AKFDAVMALSNL 191 (397)
Q Consensus 120 ~-~~g~i~~L~~lL~--~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~-~~~~~-~~~~a~~aL~nL 191 (397)
+ ..|.++.++.+.. ..+..++..++.+|..-+.+...|..+ ...+++.|-+.++ +++.. ++..|+-.|..|
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 6 4688888888888 778888888888877777655555554 4557888888885 45555 788888777643
No 148
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=1.5 Score=44.81 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhh
Q 015988 137 LNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIF 216 (397)
Q Consensus 137 ~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~ 216 (397)
+.++...+..+...+...+. .....+..+..+|.+.++.++..|+++|.+|+.++..-+.-. ..+++++-.
T Consensus 220 ~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa-----~~~i~l~~k 290 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANPA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAA-----STYIDLLVK 290 (948)
T ss_pred HHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHH-----HHHHHHHHh
Confidence 34444444444444432211 134568888999999999999999999999999876443322 345555544
Q ss_pred cccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 217 CKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 217 ~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
.+++ .+..-.+.-|..+. .....++ .|.+..++.+|.+++-+++..++.+...|...
T Consensus 291 esdn-nvklIvldrl~~l~---~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 291 ESDN-NVKLIVLDRLSELK---ALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred ccCc-chhhhhHHHHHHHh---hhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 3221 22222222333332 3334444 36788888999999999999999988888764
No 149
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.23 E-value=2.8 Score=39.59 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=140.4
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCch--hh--hhcCCHHHHHHHHh-cCCHHHHHHHHHHHHhh
Q 015988 118 KIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKP--FI--SASGAIPLLVEILR-YGSQQAKFDAVMALSNL 191 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~--~i--~~~g~i~~L~~lL~-~~~~~~~~~a~~aL~nL 191 (397)
.+...+.+..|+..|..-+.+.+..+..+..++-... +.+. .+ .....-+.+..++. .+++++-..+-..|+..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 4566788999999999999999999999888887643 2322 11 11111222222232 24667777888889999
Q ss_pred cCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh-cCCcccchhhhhccC---cHHHHHHHHhcCCHHHHH
Q 015988 192 STHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL-VGFDEGRIVLTSEEG---GVLAVVEVLENGSLQARE 267 (397)
Q Consensus 192 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL-~~~~~~~~~~~~~~g---~i~~Lv~lL~~~~~~v~~ 267 (397)
...+...+.+.....+..+.+.+..+ .-++...|...+..+ ..+.......+ ..+ .+...-.+|.+++=-++.
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl-~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFL-SNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHccCCCeEeeh
Confidence 99888888888888888888888764 457888888888886 44444444444 332 356777788889989999
Q ss_pred HHHHHHHHHhccCc-hhhHHHHH-HcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC
Q 015988 268 HAVGALLMMCQSDR-CKYREPIL-REGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 268 ~a~~~L~~L~~~~~-~~~r~~i~-~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
.++..|..+-.... -......+ +..-+..+..+|.+.+..+|..|-.+...+..+|.
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 99999999987541 11222223 34568888999999999999999999999998886
No 150
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.22 E-value=3.7 Score=40.91 Aligned_cols=273 Identities=14% Similarity=0.035 Sum_probs=146.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHH-HHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTS-QRCRRQ-LAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~-~~~~~~-l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
.++..+-..++++++.-|..|+.+++....+. ...+.. +.+++|.+..+..++-. ++..++|+++.++.+ .-..
T Consensus 366 pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~ 442 (858)
T COG5215 366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMI 442 (858)
T ss_pred HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHh
Confidence 34555556778999999999999999999875 233333 44458888888775332 688899999999863 2233
Q ss_pred HHHcCChHHHHHhhCC---CCHHHHHHHHHHHHHHhcCCC--C--chhhhh---cCCHHHHHHHHh--cCCHHHHHHHHH
Q 015988 119 IVEAGALEPIISFLQS---PDLNLQEYAAAALLTLSASSV--N--KPFISA---SGAIPLLVEILR--YGSQQAKFDAVM 186 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~nLs~~~~--~--~~~i~~---~g~i~~L~~lL~--~~~~~~~~~a~~ 186 (397)
+-..|-++..+.-... +.+....+..+..-|+..+-. . .+.+.. ...+..|+..-. .++...|..+..
T Consensus 443 i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fs 522 (858)
T COG5215 443 ISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFS 522 (858)
T ss_pred cCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 3345555555543332 245566677788888765321 1 111111 122233332211 123445555555
Q ss_pred HHHhhcCC-chhHHHHHh----------CCChHHHHHHhhhcc--cChHHHHHHHHHHHHhcCCc-ccchhhhhccCcHH
Q 015988 187 ALSNLSTH-PDNLSIILG----------TNPIPSIVDLLIFCK--KSSKTAEKCTSLIESLVGFD-EGRIVLTSEEGGVL 252 (397)
Q Consensus 187 aL~nLs~~-~~~~~~i~~----------~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~g~i~ 252 (397)
+|..|... ++....+.. ...+..+-+.+...+ ...+++.+-+.+|..+.... ...+. + +.....
T Consensus 523 aLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v-~D~lm~ 600 (858)
T COG5215 523 ALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-V-EDQLME 600 (858)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-H-HHHHHH
Confidence 55554332 222111111 111222222222110 01345556666666654322 22222 1 334567
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 253 AVVEVLENGSL-QAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 253 ~Lv~lL~~~~~-~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
.++++|++.++ .+-+....++.+|+..-+ + +=+..-...+|-|.+-+...+..+.-.|++++.-+++
T Consensus 601 Lf~r~les~~~t~~~~dV~~aIsal~~sl~-e-~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlan 668 (858)
T COG5215 601 LFIRILESTKPTTAFGDVYTAISALSTSLE-E-RFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLAN 668 (858)
T ss_pred HHHHHHhccCCchhhhHHHHHHHHHHHHHH-H-HHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 78888887643 344567777777776431 1 1112225678888887776666777777776666554
No 151
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.16 E-value=0.47 Score=42.69 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC--CChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhC
Q 015988 58 LKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA--PDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQ 133 (397)
Q Consensus 58 ~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~ 133 (397)
....|+..|..++--.|..|..+... +..++.+|.. +..++..++.+|..+..+++.|...|-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45568899999999888999998875 9999999965 3336888999999988889999999999999999999998
Q ss_pred CC--CHHHHHHHHHHHHHHhcCC
Q 015988 134 SP--DLNLQEYAAAALLTLSASS 154 (397)
Q Consensus 134 ~~--~~~~~~~a~~~L~nLs~~~ 154 (397)
+. +.+++-..+..|.-...++
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred cccccHHHhHHHHHHHHHHHccc
Confidence 65 6678888888887766544
No 152
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=1.5 Score=42.73 Aligned_cols=157 Identities=12% Similarity=0.049 Sum_probs=92.0
Q ss_pred hcCCHHHHHHHH----hcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcC
Q 015988 162 ASGAIPLLVEIL----RYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG 236 (397)
Q Consensus 162 ~~g~i~~L~~lL----~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~ 236 (397)
+.|.+..++..+ .+++...+..|+..|.|++.. ++-+..... -.++.++.-|-++ .+..++-.++.+|..+..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~-~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDD-LNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcC-CccHHHHHHHHHHHHHHH
Confidence 456666555554 356778899999999999887 443322222 1233444444343 235778888888877654
Q ss_pred CcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH--cCChHHHHHHhhcCCHHHHHHHHH
Q 015988 237 FDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR--EGVIPGLLELTIQGTPKSQTKART 314 (397)
Q Consensus 237 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~--~g~v~~L~~ll~~~~~~~~~~A~~ 314 (397)
.-.+....-.=-.+.-.+..++++.+++++-.+...+..|+...+...+..+.+ .+....++-.+.+.+|.+-.+.-.
T Consensus 330 ~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~ 409 (533)
T KOG2032|consen 330 KASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRS 409 (533)
T ss_pred hhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHH
Confidence 443333211001234467777888889999888887777766543345555554 233444444555566666555555
Q ss_pred HHHHhh
Q 015988 315 LLQLLR 320 (397)
Q Consensus 315 ~L~~l~ 320 (397)
.++.+.
T Consensus 410 ~~~~c~ 415 (533)
T KOG2032|consen 410 ELRTCY 415 (533)
T ss_pred HHHhcC
Confidence 555543
No 153
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.00 E-value=0.82 Score=47.39 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=76.8
Q ss_pred HHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh
Q 015988 84 VQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA 162 (397)
Q Consensus 84 v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 162 (397)
++.+..-+.+++ .+|-.|++++..+=. ++.- ...++++.+++.++++.+|..|+-++.++=. -.+..+.+
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~ 164 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHE 164 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhc
Confidence 555666666633 367777777776632 1111 2357889999999999999999999988853 33455667
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 015988 163 SGAIPLLVEILRYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 163 ~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~ 194 (397)
.|.+..+..++.+.+|.+..+|+.+|..+-..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 88999999999999999999999999988654
No 154
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.95 E-value=1.9 Score=36.71 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC
Q 015988 97 DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG 176 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~ 176 (397)
++..++.+++-++...+. ++ ...++.+...|+++++.+|..|+.+|..|...+-.|.. ...+..++..+.++
T Consensus 4 vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLVDE 75 (178)
T ss_pred HHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHcCC
Confidence 477788888888874442 22 23478899999999999999999999999876544332 22347788888999
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 015988 177 SQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 177 ~~~~~~~a~~aL~nLs~~ 194 (397)
+++++..|..++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998875
No 155
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.90 E-value=0.1 Score=40.92 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=56.1
Q ss_pred HHHHHHhhcC-CCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 015988 84 VQPLVLMLRA-PDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLS 151 (397)
Q Consensus 84 v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs 151 (397)
+..|+.+|.. .|. +..-|+.-|+.+++..|..|..+-+.|+-..+++++.++|++++..|+.++..+-
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7889999966 333 4566888899999989999999988999999999999999999999999887764
No 156
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.90 E-value=4.1 Score=39.73 Aligned_cols=187 Identities=14% Similarity=0.142 Sum_probs=117.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHhcCCC----CchhhhhcCCHHHHHHHHhcCC-------HHHHHHHHHHHHhhcCCch
Q 015988 128 IISFLQSPDLNLQEYAAAALLTLSASSV----NKPFISASGAIPLLVEILRYGS-------QQAKFDAVMALSNLSTHPD 196 (397)
Q Consensus 128 L~~lL~~~~~~~~~~a~~~L~nLs~~~~----~~~~i~~~g~i~~L~~lL~~~~-------~~~~~~a~~aL~nLs~~~~ 196 (397)
+..++.-.+.+-+-.++-.+..+...++ +|..+.+.-+.+.+-++|.+++ .-.+.-++..|.-.++.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 3445554555556667777777776543 5677888888899989987532 2345566677888888877
Q ss_pred hH--HHHHhCCChHHHHHHhhhccc-C----hHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC-HHHHHH
Q 015988 197 NL--SIILGTNPIPSIVDLLIFCKK-S----SKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS-LQAREH 268 (397)
Q Consensus 197 ~~--~~i~~~g~i~~Lv~ll~~~~~-~----~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~ 268 (397)
.. +.+++. ||.|..++....+ + ..+++.+..+|..++..+.+...++ ..|+++.+-++-..++ ..-..-
T Consensus 96 lAsh~~~v~~--IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 96 LASHEEMVSR--IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-ASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hccCHHHHHh--hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hcCchHHHHHHHhCCCCchhHHH
Confidence 43 556654 8899998876422 1 2367899999999999999998888 8899999998865433 222233
Q ss_pred HHHHHHHHhccCc--hhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 269 AVGALLMMCQSDR--CKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 269 a~~~L~~L~~~~~--~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
++.++.-+...-. .+.-..+.. .+..+..-+...+...+...+.+|..+
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444443332210 111122222 233444333445566677777777744
No 157
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=5.8 Score=41.07 Aligned_cols=286 Identities=14% Similarity=0.078 Sum_probs=150.7
Q ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCC-ChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHh
Q 015988 53 SDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAP-DSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISF 131 (397)
Q Consensus 53 s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~-~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l 131 (397)
..++-+|..|+.+|-++-+-+++.+..+.+.|. .+|.+. ..+.-.|+.+.-.+|- +.-..| .+-..+|+.+
T Consensus 154 D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~---~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~l 225 (968)
T KOG1060|consen 154 DPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK---KLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRL 225 (968)
T ss_pred CCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH---HHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhh
Confidence 345677777777777777666565554443333 344442 2245566666666543 333333 2346667777
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCC---CCc----------------------hhhh-hcC---CHHHHHHHHhcCCHHHHH
Q 015988 132 LQSPDLNLQEYAAAALLTLSASS---VNK----------------------PFIS-ASG---AIPLLVEILRYGSQQAKF 182 (397)
Q Consensus 132 L~~~~~~~~~~a~~~L~nLs~~~---~~~----------------------~~i~-~~g---~i~~L~~lL~~~~~~~~~ 182 (397)
|..-++=-|...+..|..-+.+. +.. ..+. +.+ .++..-.+|.+.++.+..
T Consensus 226 l~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVm 305 (968)
T KOG1060|consen 226 LPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVM 305 (968)
T ss_pred ccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHH
Confidence 76554444444555554443211 100 0011 111 122223466778899999
Q ss_pred HHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHH-hcC
Q 015988 183 DAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVL-ENG 261 (397)
Q Consensus 183 ~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL-~~~ 261 (397)
.++.+.+.|+...+.. .+++.|+++|++... .+...+..+..++.-. ..++ -|++-.+. .+.
T Consensus 306 A~aql~y~lAP~~~~~------~i~kaLvrLLrs~~~---vqyvvL~nIa~~s~~~---~~lF-----~P~lKsFfv~ss 368 (968)
T KOG1060|consen 306 AVAQLFYHLAPKNQVT------KIAKALVRLLRSNRE---VQYVVLQNIATISIKR---PTLF-----EPHLKSFFVRSS 368 (968)
T ss_pred HHHhHHHhhCCHHHHH------HHHHHHHHHHhcCCc---chhhhHHHHHHHHhcc---hhhh-----hhhhhceEeecC
Confidence 9999999999865322 346789999998643 3444444444432211 1111 12222221 223
Q ss_pred C-HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHH
Q 015988 262 S-LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCN 340 (397)
Q Consensus 262 ~-~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~ 340 (397)
| ..++..=+.+|.+|+... .... +++-+...+.+.+-.+--.|+.++..|+... ..+....+.+|+.-
T Consensus 369 Dp~~vk~lKleiLs~La~es--ni~~------ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~---~sv~~tCL~gLv~L 437 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNLANES--NISE------ILRELQTYIKSSDRSFAAAAVKAIGRCASRI---GSVTDTCLNGLVQL 437 (968)
T ss_pred CHHHHHHHHHHHHHHHhhhc--cHHH------HHHHHHHHHhcCchhHHHHHHHHHHHHHHhh---CchhhHHHHHHHHH
Confidence 3 344555666777776653 2222 2333445555544444444444555444332 45556667777754
Q ss_pred hhccCccchhh-HHHHHHHHHHHHHhHHHhHHHHHhhh
Q 015988 341 IISQIDGDEQS-GKAKKMLAEMVQVSMEQSLRHLQQRA 377 (397)
Q Consensus 341 l~~~~~~~~~~-~~A~~~L~~l~~~~~~~~~~~~~~~~ 377 (397)
|..+ .+.. .+|.-.++.|.+..+.+..+-|.+-|
T Consensus 438 lssh---de~Vv~eaV~vIk~Llq~~p~~h~~ii~~La 472 (968)
T KOG1060|consen 438 LSSH---DELVVAEAVVVIKRLLQKDPAEHLEILFQLA 472 (968)
T ss_pred Hhcc---cchhHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 4432 2233 66777777777777777666665443
No 158
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.79 E-value=0.84 Score=49.00 Aligned_cols=260 Identities=13% Similarity=0.055 Sum_probs=134.5
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhh---cChhhHHH
Q 015988 44 VHRALHLIQS-DDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAV---KDEKNKIK 118 (397)
Q Consensus 44 l~~lv~lL~s-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~---~~~~~~~~ 118 (397)
+..+..-+++ ...+.+..|+..|..++..- ..-..+.-.+|.++.++.+++. ++..|+.+|..+.. +-+..-..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 3444444433 35578899999999998753 2222233348999999998444 57778877766543 23333344
Q ss_pred HHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchh
Q 015988 119 IVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
++-.-.+|.|-.++.+ ....++..-+..|..|+... ..+.+.+.-.....++++++.+ ..-+.. ....
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA---~rFle~~q~~~~~g~~n~~nse-------t~~~~~-~~~~ 571 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA---YRFLELTQELRQAGMLNDPNSE-------TAPEQN-YNTE 571 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH---HHHHHHHHHHHhcccccCcccc-------cccccc-cchH
Confidence 4444556667777766 33344544444555544211 1111111111111122222221 000000 0111
Q ss_pred HHHHHhCCChHH-HHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015988 198 LSIILGTNPIPS-IVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMM 276 (397)
Q Consensus 198 ~~~i~~~g~i~~-Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 276 (397)
.+.+.. .++. ++.++.+. .+-+...-+..|.-||..-.-.+. +.-.+++|+.+|...+...|-.-...+..+
T Consensus 572 ~~~L~~--~V~~~v~sLlsd~--~~~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLNDkDw~LR~aFfdsI~gv 644 (1431)
T KOG1240|consen 572 LQALHH--TVEQMVSSLLSDS--PPIVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLNDKDWRLRGAFFDSIVGV 644 (1431)
T ss_pred HHHHHH--HHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhcCccHHHHHHHHhhccce
Confidence 122221 1333 33344433 233444445556655543322211 223567788888777777776666666655
Q ss_pred hccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCC
Q 015988 277 CQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPR 326 (397)
Q Consensus 277 ~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 326 (397)
|..-. ..-+++..+|.|.+-+.+..+.|-..|.++|..|.+....+
T Consensus 645 si~VG----~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~ 690 (1431)
T KOG1240|consen 645 SIFVG----WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLR 690 (1431)
T ss_pred EEEEe----eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccc
Confidence 55421 12245667788888888788888888888888777766433
No 159
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.79 E-value=0.81 Score=49.13 Aligned_cols=254 Identities=12% Similarity=0.087 Sum_probs=138.1
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhh----ChHHHHHHHHh-HHHHHHhhcC--CChhHHHHHHHHHHhhhcChh
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKT----SQRCRRQLAQA-VQPLVLMLRA--PDSDHESALLALLNLAVKDEK 114 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~----~~~~~~~l~~~-v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~~~~ 114 (397)
-.+|.++.++......+|..|+.+|..+... ++..-..+.+- .|.|-.++.+ +..++..=+..|..|+.. .
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t--A 539 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT--A 539 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH--H
Confidence 4566677777777788888888888777653 12233334443 6777777665 222455555666666651 1
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 015988 115 NKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~ 194 (397)
+ .|.+.+.-.....+++..+.+. ......+ ....++ -.++=.....+|.++.+-++..-+..|.-|+.
T Consensus 540 ~--rFle~~q~~~~~g~~n~~nset-------~~~~~~~-~~~~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~- 607 (1431)
T KOG1240|consen 540 Y--RFLELTQELRQAGMLNDPNSET-------APEQNYN-TELQAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCV- 607 (1431)
T ss_pred H--HHHHHHHHHHhcccccCccccc-------ccccccc-hHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-
Confidence 1 2222221111222333322210 0000000 000000 01122233344555555555555555555543
Q ss_pred chhHHHHHh---C-CChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHH
Q 015988 195 PDNLSIILG---T-NPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAV 270 (397)
Q Consensus 195 ~~~~~~i~~---~-g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~ 270 (397)
.+++ . =+++.|...|.+. +..++..=..-|.-++..-..+. + +++.+|.|.+-|..+.+-|...|+
T Consensus 608 -----FFGk~ksND~iLshLiTfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs--~-seyllPLl~Q~ltD~EE~Viv~aL 677 (1431)
T KOG1240|consen 608 -----FFGKEKSNDVILSHLITFLNDK--DWRLRGAFFDSIVGVSIFVGWRS--V-SEYLLPLLQQGLTDGEEAVIVSAL 677 (1431)
T ss_pred -----HhhhcccccchHHHHHHHhcCc--cHHHHHHHHhhccceEEEEeeee--H-HHHHHHHHHHhccCcchhhHHHHH
Confidence 2222 2 2456677777664 33443333333333333322222 1 566778888888888899999999
Q ss_pred HHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 271 GALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
++|..|+... -.|+..+ -..++....+|-+.+..+|+.++.++....+.
T Consensus 678 ~~ls~Lik~~--ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 678 GSLSILIKLG--LLRKPAV-KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHhc--ccchHHH-HHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 9999999875 4444333 23677777888899999999999988776543
No 160
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.75 E-value=0.045 Score=47.07 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=66.1
Q ss_pred HHHHHhCCChHHHHHHhhhcc-------cChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHH
Q 015988 198 LSIILGTNPIPSIVDLLIFCK-------KSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAV 270 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~ 270 (397)
.+.+++.||+..|+++|.... .+......++.+|..+.....|...++...+++..|...|.+++..++..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 466777888999988886521 2246778999999999999999999997889999999999999999999999
Q ss_pred HHHHHHhc
Q 015988 271 GALLMMCQ 278 (397)
Q Consensus 271 ~~L~~L~~ 278 (397)
.+|..+|.
T Consensus 180 eiL~~lc~ 187 (187)
T PF06371_consen 180 EILAALCL 187 (187)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 99999873
No 161
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=94.58 E-value=0.52 Score=43.08 Aligned_cols=185 Identities=15% Similarity=0.097 Sum_probs=110.7
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHHcC--ChHHHHHhhCC----CCHHHHHHHHHHHHHHhcCCCC
Q 015988 84 VQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVEAG--ALEPIISFLQS----PDLNLQEYAAAALLTLSASSVN 156 (397)
Q Consensus 84 v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g--~i~~L~~lL~~----~~~~~~~~a~~~L~nLs~~~~~ 156 (397)
...+...+.. +...+.-++..++-++. ++.....+...+ ....+..++.. ..+..+-.++++++|+-.+...
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 5666666666 44448888988888887 566655555443 24444444432 4667788899999999998888
Q ss_pred chhhhhc-C-CHHHHHHHHhcC----CHHHHHHHHHHHHhhcCCc-hhH-HHHHhCCChHHHHHHhhhcccChHHHHHHH
Q 015988 157 KPFISAS-G-AIPLLVEILRYG----SQQAKFDAVMALSNLSTHP-DNL-SIILGTNPIPSIVDLLIFCKKSSKTAEKCT 228 (397)
Q Consensus 157 ~~~i~~~-g-~i~~L~~lL~~~----~~~~~~~a~~aL~nLs~~~-~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 228 (397)
+..+... + .+...+..+... +..++..++..+.|++... ..+ ..=.....+..+.+.+.....+.+....++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 8777643 2 333333333333 6788999999999998631 111 000011234555554433334678889999
Q ss_pred HHHHHhcCCcccchhhhhccCcHHHHHHHHh-cCCHHHHHHH
Q 015988 229 SLIESLVGFDEGRIVLTSEEGGVLAVVEVLE-NGSLQAREHA 269 (397)
Q Consensus 229 ~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~a 269 (397)
.+|++|...+..........|+-..+-..-. ..++.+++-+
T Consensus 224 vAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 224 VALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 9999999777766666633344333333332 3345555433
No 162
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.49 E-value=0.94 Score=38.64 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHH
Q 015988 221 SKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLEL 300 (397)
Q Consensus 221 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~l 300 (397)
+.++..++.+++-|+....+ ++ +..++.+...|.++++.+|..|+.+|..|...+. .+ ++...+..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~---~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~--ik---~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN---LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM--IK---VKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH---HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc--ee---ehhhhhHHHHHH
Confidence 35667788888877654443 22 3467899999999999999999999999987652 11 112234788888
Q ss_pred hhcCCHHHHHHHHHHHHHhhcC
Q 015988 301 TIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 301 l~~~~~~~~~~A~~~L~~l~~~ 322 (397)
+.+.++.++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999888765
No 163
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.42 E-value=0.68 Score=35.13 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhC-hHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHH--cCChHHHHHhhCC
Q 015988 59 KLEAAREIRRLTKTS-QRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVE--AGALEPIISFLQS 134 (397)
Q Consensus 59 ~~~a~~~L~~l~~~~-~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~--~g~i~~L~~lL~~ 134 (397)
|..++..|...+..- ......+.+.+++++..+.+++. ++..|+.+|.++++. .+..+.. ...+..|.+++..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcC
Confidence 556677777776543 23444455559999999988655 799999999999873 2344443 4667888888888
Q ss_pred CCHHHHHHHHHHHHHH
Q 015988 135 PDLNLQEYAAAALLTL 150 (397)
Q Consensus 135 ~~~~~~~~a~~~L~nL 150 (397)
.++.++..| ..|-++
T Consensus 80 ~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRL 94 (97)
T ss_pred CchhHHHHH-HHHHHH
Confidence 888888765 444433
No 164
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.37 E-value=4.2 Score=39.23 Aligned_cols=148 Identities=12% Similarity=0.080 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhc-CCCCch---hhhh-cCCHHHHHHHHhcCC---HHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHH
Q 015988 141 EYAAAALLTLSA-SSVNKP---FISA-SGAIPLLVEILRYGS---QQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIV 211 (397)
Q Consensus 141 ~~a~~~L~nLs~-~~~~~~---~i~~-~g~i~~L~~lL~~~~---~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv 211 (397)
...+.++..+.. ...... .+.+ ...+..|-.++.+.. +.+-..|+..+..+..+ |..-..+.+.|.++.++
T Consensus 78 K~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 78 KSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 334444544545 232222 2334 444555666666543 67778888888888876 56667888899999999
Q ss_pred HHhh-hc-ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC-------HHHHHHHHHHHHHHhccCch
Q 015988 212 DLLI-FC-KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS-------LQAREHAVGALLMMCQSDRC 282 (397)
Q Consensus 212 ~ll~-~~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~v~~~a~~~L~~L~~~~~~ 282 (397)
+.+. .. .+..++....-.+|..||-+..+.+.+. +.+.++.+++++.+++ .+.....-..+..|.++. +
T Consensus 158 ~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~-~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~-p 235 (379)
T PF06025_consen 158 DAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVK-SSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH-P 235 (379)
T ss_pred HHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHH-hcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC-H
Confidence 9887 43 3456777777888999999999999988 7899999999987643 134445556677778876 4
Q ss_pred hhHHHHHH
Q 015988 283 KYREPILR 290 (397)
Q Consensus 283 ~~r~~i~~ 290 (397)
..|..+++
T Consensus 236 ~Lk~~i~~ 243 (379)
T PF06025_consen 236 SLKPDIID 243 (379)
T ss_pred HHHHHHHH
Confidence 67766665
No 165
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.30 E-value=0.93 Score=47.26 Aligned_cols=195 Identities=12% Similarity=0.143 Sum_probs=123.6
Q ss_pred HHHHhhhcChhhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHH--HHHHHHhcCC-HH
Q 015988 104 ALLNLAVKDEKNKIKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASGAIP--LLVEILRYGS-QQ 179 (397)
Q Consensus 104 ~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~--~L~~lL~~~~-~~ 179 (397)
+|.+....++++...+.+.|++..+..+++. ...+++..+++.+.|++...+.+..+.....+. .+-.++..-+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 6778888899999999999999999999984 567789999999999998665554443222222 3333444444 48
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHH-HHHHH
Q 015988 180 AKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLA-VVEVL 258 (397)
Q Consensus 180 ~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~-Lv~lL 258 (397)
.-+.|++.|..+..+.+. ....+.-+.+-.++... +.........+. -...+.+ +..++
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l~e~----------------i~~~~~~~~~~~-~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELLVEA----------------ISRWLTSEIRVI-NDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHHHHH----------------hhccCccceeeh-hhhhcchhHHHHh
Confidence 888999999988776443 11222222222222111 111111111111 1222333 55555
Q ss_pred hc-CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc-CCHHHHHHHHHHHHHh
Q 015988 259 EN-GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ-GTPKSQTKARTLLQLL 319 (397)
Q Consensus 259 ~~-~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l 319 (397)
.. ..+..+..|++++.+++...+ ++++.+.+.|+++.+.++-.. ....+++.+...+..+
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNK-EYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcCh-hhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 43 457788999999999999884 688888889999988775433 2455566666555443
No 166
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.27 E-value=2.7 Score=39.37 Aligned_cols=149 Identities=20% Similarity=0.197 Sum_probs=81.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcC--C-CCchhhhhcCCHHHHHHHHhcCC--HHHHHHHHHHHHhhcCC----c
Q 015988 125 LEPIISFLQSPDLNLQEYAAAALLTLSAS--S-VNKPFISASGAIPLLVEILRYGS--QQAKFDAVMALSNLSTH----P 195 (397)
Q Consensus 125 i~~L~~lL~~~~~~~~~~a~~~L~nLs~~--~-~~~~~i~~~g~i~~L~~lL~~~~--~~~~~~a~~aL~nLs~~----~ 195 (397)
+..+.+.++.+..+-+..|+.++.-++.. . .....+. ....|.|.+.+.+++ +.+|..++.+|.-++.. .
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 44455666666555555666666666554 1 2223332 346778888887654 45666666666665542 2
Q ss_pred hhHHHHHhCCChHHHHH--Hhhhc--------ccChHHHHHHHHHHHHhcC-Cccc-chhhhhccCcHHHHHHHHhcCCH
Q 015988 196 DNLSIILGTNPIPSIVD--LLIFC--------KKSSKTAEKCTSLIESLVG-FDEG-RIVLTSEEGGVLAVVEVLENGSL 263 (397)
Q Consensus 196 ~~~~~i~~~g~i~~Lv~--ll~~~--------~~~~~~~~~a~~~L~nL~~-~~~~-~~~~~~~~g~i~~Lv~lL~~~~~ 263 (397)
+......+ .++.+.. ..+.+ .+...++..|+..-.-|.. .+.. ..... ...++.|..+|++++.
T Consensus 167 ~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~ 242 (309)
T PF05004_consen 167 EETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDV 242 (309)
T ss_pred hHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCH
Confidence 22221111 1221111 11211 1124566666665554433 2221 22222 4578999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 015988 264 QAREHAVGALLMMCQ 278 (397)
Q Consensus 264 ~v~~~a~~~L~~L~~ 278 (397)
++|..|-.+|.-|..
T Consensus 243 ~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 243 DVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888877744
No 167
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.20 E-value=3.6 Score=42.86 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=104.5
Q ss_pred hCCCCHHHHHHHH-HHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHH
Q 015988 132 LQSPDLNLQEYAA-AALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSI 210 (397)
Q Consensus 132 L~~~~~~~~~~a~-~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~L 210 (397)
+.+.+..-+..|. .++..|+..++. .-.++.+++...+.|.+++.-.--=|.+.+........+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 4444444444443 456666655441 123455556566677777776666666666643311111 13344
Q ss_pred HHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH
Q 015988 211 VDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR 290 (397)
Q Consensus 211 v~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~ 290 (397)
.+=+++ +++.++..|++.+..+= ...++ ...++.+.+++.++++-||..|+-++..+-+.+ +..+.+
T Consensus 98 ~kDl~d--~N~~iR~~AlR~ls~l~-----~~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld----~~l~~~ 164 (757)
T COG5096 98 QKDLQD--PNEEIRGFALRTLSLLR-----VKELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD----KDLYHE 164 (757)
T ss_pred HhhccC--CCHHHHHHHHHHHHhcC-----hHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC----Hhhhhc
Confidence 444444 35677788888777441 11122 235677778888888888888888888887654 345567
Q ss_pred cCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 291 EGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 291 ~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
.|.+..+..++.+.+|.+..+|...|..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 77888888888888888888888888777544
No 168
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.92 E-value=0.12 Score=30.08 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 251 VLAVVEVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 251 i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
+|.+++++.++++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999753
No 169
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.90 E-value=3 Score=40.23 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=75.7
Q ss_pred HHHHHHhhcCC----ChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhC-CC---CHHHHHHHHHHHHHHhcCCC
Q 015988 84 VQPLVLMLRAP----DSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQ-SP---DLNLQEYAAAALLTLSASSV 155 (397)
Q Consensus 84 v~~Lv~lL~~~----~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~-~~---~~~~~~~a~~~L~nLs~~~~ 155 (397)
...|...++.. ..+--.|+..+..+....|..-..+.++|.++.++.-+. .+ +.++....-.+|..++.+..
T Consensus 108 ~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~ 187 (379)
T PF06025_consen 108 LSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNR 187 (379)
T ss_pred HHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH
Confidence 55566666652 224667888899999888999999999999999999887 43 56777777889999999999
Q ss_pred CchhhhhcCCHHHHHHHHhcC
Q 015988 156 NKPFISASGAIPLLVEILRYG 176 (397)
Q Consensus 156 ~~~~i~~~g~i~~L~~lL~~~ 176 (397)
..+.+.+.+.++.+++++.++
T Consensus 188 Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 188 GLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHHhcChHHHHHHHhCCH
Confidence 999999999999999988653
No 170
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.81 E-value=0.24 Score=35.30 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCC
Q 015988 224 AEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN-GSLQAREHAVGALLMMCQSDRCKYREPILREGV 293 (397)
Q Consensus 224 ~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~ 293 (397)
.+.|+.++.+++..+.+...+- +.+.++.++++..+ +...+|-.|..+|.-+++.. ++++.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~--~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE--EGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH--HHHHHHHHcCC
Confidence 4789999999999998888765 78999999999875 55889999999999999874 78887777764
No 171
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=3.3 Score=43.16 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=111.7
Q ss_pred ccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChh
Q 015988 37 SSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRAPDS-DHESALLALLNLAVKDEK 114 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~ 114 (397)
...+...++..+..+..+-+.+|-.++..|+++..+.........+. +...+..|++.|. +--.|+..+..||.-
T Consensus 722 ~s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--- 798 (982)
T KOG4653|consen 722 YSVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--- 798 (982)
T ss_pred ccccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---
Confidence 34556667788888888888999999999999998653333334444 7888999998554 566777777777652
Q ss_pred hHHHHHHcCChHHHHHhhCCC----CHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 115 NKIKIVEAGALEPIISFLQSP----DLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALS 189 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~~~----~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~ 189 (397)
.....+|.|.+.-.+. .++.+...-.++.++...- +......+ ..+...+...++++...|..++..+.
T Consensus 799 -----y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 799 -----YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLG 872 (982)
T ss_pred -----cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHH
Confidence 3345666777644322 1233333335555554311 11111111 23444445556667777888888888
Q ss_pred hhcCCchhH--HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcC
Q 015988 190 NLSTHPDNL--SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG 236 (397)
Q Consensus 190 nLs~~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~ 236 (397)
+|+.--..+ ..+. .++..++.+.+.+ ....++++|..++..+-.
T Consensus 873 ~Lcq~~a~~vsd~~~--ev~~~Il~l~~~d-~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 873 QLCQLLAFQVSDFFH--EVLQLILSLETTD-GSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHhhhhhHHHH--HHHHHHHHHHccC-CchhhHHHHHHHHHHHHh
Confidence 887632211 1111 2344455555554 245667778888776644
No 172
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=2.8 Score=44.73 Aligned_cols=254 Identities=16% Similarity=0.141 Sum_probs=147.6
Q ss_pred HHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCC-----
Q 015988 63 AREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSP----- 135 (397)
Q Consensus 63 ~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~----- 135 (397)
-..|..+.+++.++...+.++ +..++.++-+ |..+-..++.+..|...++.. +...-+-.|+..|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin-dehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN-DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec-hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceecc
Confidence 445677788888899988886 6666666633 222444455555555434331 1122344566666653
Q ss_pred ---C----HHHHHHHHHHHHHHhcC-CCCchhhhhcCCHHHHHHHHhc----------CCHHHHHHHHHHHHh---h--c
Q 015988 136 ---D----LNLQEYAAAALLTLSAS-SVNKPFISASGAIPLLVEILRY----------GSQQAKFDAVMALSN---L--S 192 (397)
Q Consensus 136 ---~----~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L~~lL~~----------~~~~~~~~a~~aL~n---L--s 192 (397)
+ ..+.....+++|.+..- ...+..+.+.+++..|...|.. ++.-+-..-...|.. + +
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 1 23566677888888753 3577888899998888877742 121111222222222 2 2
Q ss_pred CCchhHHHHHhCCChHHHHHHhhhcc-----cC-----------------hHHH--HHHHHHHHHhcC-----------C
Q 015988 193 THPDNLSIILGTNPIPSIVDLLIFCK-----KS-----------------SKTA--EKCTSLIESLVG-----------F 237 (397)
Q Consensus 193 ~~~~~~~~i~~~g~i~~Lv~ll~~~~-----~~-----------------~~~~--~~a~~~L~nL~~-----------~ 237 (397)
.++.|+..+-..-.-+....+|+... .. +.+. ..|+.-+..+-. .
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 33444433322111122222222210 00 0010 122222222211 1
Q ss_pred cccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhh---cCCHHHHHHHHH
Q 015988 238 DEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTI---QGTPKSQTKART 314 (397)
Q Consensus 238 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~---~~~~~~~~~A~~ 314 (397)
......+. ..|++..+++.+-...+..+..-+..+..+++.+ +.+.+.....|.++.|++++. +++...-.+|..
T Consensus 898 npdk~~iy-nagavRvlirslLlnypK~qlefl~lleSlaRas-pfnaelltS~gcvellleIiypflsgsspfLshalk 975 (2799)
T KOG1788|consen 898 NPDKQKIY-NAGAVRVLIRSLLLNYPKLQLEFLNLLESLARAS-PFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALK 975 (2799)
T ss_pred CchHhhhc-ccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC-CCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHH
Confidence 12344555 7899999999988778999999999999999987 467776777999999988773 366677788888
Q ss_pred HHHHhhcCC
Q 015988 315 LLQLLRDSP 323 (397)
Q Consensus 315 ~L~~l~~~~ 323 (397)
++..++..+
T Consensus 976 IvemLgayr 984 (2799)
T KOG1788|consen 976 IVEMLGAYR 984 (2799)
T ss_pred HHHHHhhcc
Confidence 888886654
No 173
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=2.6 Score=41.07 Aligned_cols=142 Identities=12% Similarity=-0.008 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHH-hhCCCCHHHHHHHHHHHHHHhcCCCCchhhh-hcCCHHHHHHHHh
Q 015988 97 DHESALLALLNLAVKDEKNKIKIVEAGALEPIIS-FLQSPDLNLQEYAAAALLTLSASSVNKPFIS-ASGAIPLLVEILR 174 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~L~~lL~ 174 (397)
.+..|+..|.+.+...|.-....... .+..++. +.+..+.+++..+..+|..+.....++.... --.+.-.+..+..
T Consensus 274 ~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~ 352 (533)
T KOG2032|consen 274 SRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFD 352 (533)
T ss_pred HHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHH
Confidence 67889999999998645433333222 2333444 4445567888888888887765433322211 1223345666788
Q ss_pred cCCHHHHHHHHHHHHhhcCC--chhHHHHHh--CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccch
Q 015988 175 YGSQQAKFDAVMALSNLSTH--PDNLSIILG--TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRI 242 (397)
Q Consensus 175 ~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 242 (397)
+.+++.+..|...+..|+.. ..-+..+.+ .+....++-.|.+. .+. +..|++.....+..+-.++
T Consensus 353 se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~--~p~-va~ACr~~~~~c~p~l~rk 421 (533)
T KOG2032|consen 353 SEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDP--NPY-VARACRSELRTCYPNLVRK 421 (533)
T ss_pred hcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCC--ChH-HHHHHHHHHHhcCchhHHH
Confidence 99999999999888887753 222333332 22223333334443 233 3566666665555544443
No 174
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.59 E-value=4.8 Score=38.09 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=110.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhh-hChHH-HHHHHHh---HHHHHHhhcC-----CC---------hhHHHHHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTK-TSQRC-RRQLAQA---VQPLVLMLRA-----PD---------SDHESALL 103 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~-~~~~~-~~~l~~~---v~~Lv~lL~~-----~~---------~~~~~a~~ 103 (397)
.+..+.+.|++.....+..+++.|..+.. .+... ++.+..- .+.+..++.. .+ .++...+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 46778888888888888899999999998 55344 4444442 6677777643 11 44667776
Q ss_pred HHHHh-hhcChhhHHHHHH-cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-----CCchhhhhcCCHHHHHHHHhcC
Q 015988 104 ALLNL-AVKDEKNKIKIVE-AGALEPIISFLQSPDLNLQEYAAAALLTLSASS-----VNKPFISASGAIPLLVEILRYG 176 (397)
Q Consensus 104 ~L~~L-~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-----~~~~~i~~~g~i~~L~~lL~~~ 176 (397)
.+..+ ...++..+..+.+ .+.+..+.+-|..+++++....+.+|+.=...+ ..|..+.....+..|..+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 65544 4456667777765 567888999999999999999999999644333 2355666778899999977666
Q ss_pred CH----HHHHHHHHHHHhhcCCch
Q 015988 177 SQ----QAKFDAVMALSNLSTHPD 196 (397)
Q Consensus 177 ~~----~~~~~a~~aL~nLs~~~~ 196 (397)
++ .+...+-..|..++.++.
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCC
Confidence 66 778888888888887654
No 175
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.45 E-value=3.1 Score=43.58 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=115.8
Q ss_pred cCCHHHHHHHHHHHHhhcCCchhHHHHHh--CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHH
Q 015988 175 YGSQQAKFDAVMALSNLSTHPDNLSIILG--TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVL 252 (397)
Q Consensus 175 ~~~~~~~~~a~~aL~nLs~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~ 252 (397)
+..+.++..|+.+++..+.. +.+.. .++++.|.++.... ...+....+.+|.-.+..+....... +....|
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild~L~qlas~~--s~evl~llmE~Ls~vv~~dpef~as~-~skI~P 574 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKV----KVLLSLQPMILDGLLQLASKS--SDEVLVLLMEALSSVVKLDPEFAASM-ESKICP 574 (1005)
T ss_pred CCCCchhHHHHHHHHhccCc----eeccccchHHHHHHHHHcccc--cHHHHHHHHHHHHHHhccChhhhhhh-hcchhH
Confidence 34567788888888877721 11222 45666777776654 24566777778887777766655555 666777
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCC----HHHHHHHHHHHHHhhcC-CC-
Q 015988 253 AVVEVLE--NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGT----PKSQTKARTLLQLLRDS-PY- 324 (397)
Q Consensus 253 ~Lv~lL~--~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~----~~~~~~A~~~L~~l~~~-~~- 324 (397)
.++.++. +.+|-+...+-.++..++... .+. .=...-.+|.++..+.... +...-.|..+|..+.++ +.
T Consensus 575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~~--~~~-g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 575 LTINLFLKYSEDPQVASLAQDLFEELLQIA--ANY-GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHH--Hhh-cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC
Confidence 7777754 456777777777777776642 222 2222346999999997755 56677777888866444 33
Q ss_pred CCcccCcCchHHHHHHhhccCccchhhHHHHHHHHHHHHHhHH
Q 015988 325 PRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVSME 367 (397)
Q Consensus 325 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~~~~~ 367 (397)
....+-.-..|++ .++..|.+..+....|.++||.+..+.++
T Consensus 652 L~~~l~~~~FpaV-ak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 652 LPNLLICYAFPAV-AKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred ccHHHHHHHhHHh-HhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 3333334445544 45666666665558888999988887655
No 176
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.30 E-value=7.3 Score=37.35 Aligned_cols=236 Identities=19% Similarity=0.201 Sum_probs=127.5
Q ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC-CCh--hHHHHHHHHHHhhhcChhh
Q 015988 42 SAVHRALHLIQSD-DPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA-PDS--DHESALLALLNLAVKDEKN 115 (397)
Q Consensus 42 ~~l~~lv~lL~s~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~-~~~--~~~~a~~~L~~L~~~~~~~ 115 (397)
+.+..+++-+.++ +..+|+.++..|+.-+.+ ++.+..++.. +..++..+.. ++. ....++.++.-++. +..+
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~-d~~~ 98 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR-DGLN 98 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc-CCcc
Confidence 3455666666633 457888888888888775 5788777764 8888888855 322 22233333444443 2222
Q ss_pred HHHHHHcCChHHHHHhhC--CC------------------------------------------CHHHHHHHHHHHHHHh
Q 015988 116 KIKIVEAGALEPIISFLQ--SP------------------------------------------DLNLQEYAAAALLTLS 151 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~--~~------------------------------------------~~~~~~~a~~~L~nLs 151 (397)
-..+.+.+....++.++. .. ...-+..|+.++-.++
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~ 178 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLV 178 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHH
Confidence 222223333444344444 00 0011122333333331
Q ss_pred ------------c---CCCCchhhhhcCCHHHHHHHHhc----C------------CHHHHHHHHHHHHhhcCC-chhHH
Q 015988 152 ------------A---SSVNKPFISASGAIPLLVEILRY----G------------SQQAKFDAVMALSNLSTH-PDNLS 199 (397)
Q Consensus 152 ------------~---~~~~~~~i~~~g~i~~L~~lL~~----~------------~~~~~~~a~~aL~nLs~~-~~~~~ 199 (397)
. .+..|+.+...|++..++.++.. . +......++.+|.|.+.. .+|+.
T Consensus 179 ~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~ 258 (361)
T PF07814_consen 179 RSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQS 258 (361)
T ss_pred HHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchH
Confidence 0 12346777788899999998862 1 123456788888888864 56666
Q ss_pred HHHh--CCChHH-HHHHhhhcc-cChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHH-------HHHh-------c
Q 015988 200 IILG--TNPIPS-IVDLLIFCK-KSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVV-------EVLE-------N 260 (397)
Q Consensus 200 ~i~~--~g~i~~-Lv~ll~~~~-~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv-------~lL~-------~ 260 (397)
.+.. .+.+.. +..++.... ....+...+++++.|++.++. .+..+. ..+....+. .++. .
T Consensus 259 ~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~-s~~l~~~~~~i~~~~~~~~~~~~~~~~~ 337 (361)
T PF07814_consen 259 YLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA-SPKLGQQLGLIVTSFFCVLSLPNYVPEE 337 (361)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh-hhHhccchHHHHHhhccccccccccccc
Confidence 6655 333333 333333321 123446788999999988763 333322 222211111 1111 1
Q ss_pred CCHHHHHHHHHHHHHHhccC
Q 015988 261 GSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 261 ~~~~v~~~a~~~L~~L~~~~ 280 (397)
..-+..--++++|.||+.++
T Consensus 338 ~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 338 SSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccchHHHHHHHhHHHheeeC
Confidence 12356677899999998876
No 177
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.24 E-value=7 Score=41.03 Aligned_cols=296 Identities=14% Similarity=0.133 Sum_probs=173.1
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcC
Q 015988 16 DTNPDTPRACSPSSSS-SFSSSSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRA 93 (397)
Q Consensus 16 ~~~~~~~~~c~~~~~~-~~~~~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~ 93 (397)
+..+....+|..+... ...+...+.....+..-++-+.+++.+|..++.-+..++..-+. ...... ++.+.++..+
T Consensus 210 d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~D 287 (759)
T KOG0211|consen 210 DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRD 287 (759)
T ss_pred hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhc
Confidence 3334444455433322 11122334444444444555566788899888888888875322 222223 7788888877
Q ss_pred -CChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHH
Q 015988 94 -PDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEI 172 (397)
Q Consensus 94 -~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~l 172 (397)
.+.++..|...+..+..--+. ..=...-..+.++.....++..++.......+-+...= .........++....+
T Consensus 288 dqdsVr~~a~~~~~~l~~l~~~--~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~~l 363 (759)
T KOG0211|consen 288 DQDSVREAAVESLVSLLDLLDD--DDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV--GPSATRTQLVPPVSNL 363 (759)
T ss_pred chhhHHHHHHHHHHHHHHhcCC--chhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh--ccccCcccchhhHHHH
Confidence 566788888777776542111 10112345677888888888777777766666665311 1122334567777888
Q ss_pred HhcCCHHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCc
Q 015988 173 LRYGSQQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGG 250 (397)
Q Consensus 173 L~~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~ 250 (397)
++....+.+..++.-...++.. .+....+....+++.+-.++.+.. ..+.......+.++...-. ...-+ .-.
T Consensus 364 ~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~--~~vr~a~a~~~~~~~p~~~-k~~ti--~~l 438 (759)
T KOG0211|consen 364 LKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA--LHVRSALASVITGLSPILP-KERTI--SEL 438 (759)
T ss_pred hcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc--chHHHHHhccccccCccCC-cCcCc--ccc
Confidence 8887777877777666666543 233444455555677777766643 3333333333443322221 11111 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 251 VLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 251 i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
.+.++..++...+.++......+..+-..++ ...........+|.+..+.....-+++.+....+..++...
T Consensus 439 lp~~~~~l~de~~~V~lnli~~ls~~~~v~~-v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~ 510 (759)
T KOG0211|consen 439 LPLLIGNLKDEDPIVRLNLIDKLSLLEEVND-VIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL 510 (759)
T ss_pred ChhhhhhcchhhHHHHHhhHHHHHHHHhccC-cccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh
Confidence 5666667777789999998877766644442 33344556667888888877666777777777776665544
No 178
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.04 E-value=0.23 Score=28.77 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTK 71 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~ 71 (397)
++.++++++++++++|..|+.+|..+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6788899999999999999999998875
No 179
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.02 E-value=6.6 Score=38.38 Aligned_cols=133 Identities=10% Similarity=0.154 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCc----hhHHHHHhCCChHHHHHHhhhc---ccChH--HHHHHHHHHHHhcC
Q 015988 166 IPLLVEILRYGSQQAKFDAVMALSNLSTHP----DNLSIILGTNPIPSIVDLLIFC---KKSSK--TAEKCTSLIESLVG 236 (397)
Q Consensus 166 i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~----~~~~~i~~~g~i~~Lv~ll~~~---~~~~~--~~~~a~~~L~nL~~ 236 (397)
...+..+++..+.+-+..|+.....+..+. .+++.+.++-+++.+-+++.+. .+.++ ...-++.+|..+|.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 334666777778888888888888888754 3677788877788888888763 11222 33556778888888
Q ss_pred Ccc--cchhhhhccCcHHHHHHHHhcC-CH------HHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc
Q 015988 237 FDE--GRIVLTSEEGGVLAVVEVLENG-SL------QAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ 303 (397)
Q Consensus 237 ~~~--~~~~~~~~~g~i~~Lv~lL~~~-~~------~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~ 303 (397)
.++ ...+++ ..||.|.+++..+ ++ .+.+.+-.+|..++... .+...++..|+++.+.++-..
T Consensus 93 ~pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e--~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 93 VPELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE--AGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred ChhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC--chhHHHHhcCchHHHHHHHhC
Confidence 887 455555 5899999999742 23 37888999999999874 688899999999999875544
No 180
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.90 E-value=14 Score=38.92 Aligned_cols=216 Identities=13% Similarity=0.124 Sum_probs=138.2
Q ss_pred HHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCH
Q 015988 100 SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQ 178 (397)
Q Consensus 100 ~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~ 178 (397)
.+.+++...+.....+...+.. .+...+..+. +..+.++..|+.+++..+....... ..++.+..|.++....+.
T Consensus 469 Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~ 544 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSD 544 (1005)
T ss_pred HHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHcccccH
Confidence 5666666555432222221111 1222333333 3455677777777777662111111 146778888888877777
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHH
Q 015988 179 QAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVL 258 (397)
Q Consensus 179 ~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL 258 (397)
++......+|...+..+.......++.+.|....+.....+++.+...+-.++..|+....+...+. +-.+|.++..|
T Consensus 545 evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~--e~~iPslisil 622 (1005)
T KOG2274|consen 545 EVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ--ERLIPSLISVL 622 (1005)
T ss_pred HHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHH
Confidence 8887778888888875544444455667777777766655667777777777777777555555543 46899999999
Q ss_pred hcCC----HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHh-hcCCHHHHHHHHHHHHHhhcC
Q 015988 259 ENGS----LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELT-IQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 259 ~~~~----~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll-~~~~~~~~~~A~~~L~~l~~~ 322 (397)
..+. +....-++.+|..+.++.++..-+.+.. -+.|.+.+.. ++++...-+.+..+|+.+...
T Consensus 623 ~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 623 QLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred cCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 8755 6677788888888877765555555554 3567777754 557778888999999887544
No 181
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.83 E-value=1.3 Score=44.56 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=80.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVE 121 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~ 121 (397)
....++... .++...+.-|+..|..+.+.-|+..+ +++..++.++.+.|. ++..|+..|-.+|+++++....+
T Consensus 24 ~y~~il~~~-kg~~k~K~Laaq~I~kffk~FP~l~~---~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 24 DYKEILDGV-KGSPKEKRLAAQFIPKFFKHFPDLQE---EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHHHHGG-GS-HHHHHHHHHHHHHHHCC-GGGHH---HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 344455544 46788888999999999887666553 247788888888665 89999999999999877777766
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh---cCCHHHHHHHHHHHH
Q 015988 122 AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR---YGSQQAKFDAVMALS 189 (397)
Q Consensus 122 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~---~~~~~~~~~a~~aL~ 189 (397)
+..|+.+|..+++.-...+-.+|..+-..+ ..+.+..++..+. +++..+|+.++..|.
T Consensus 98 ---aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ---ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp ---HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 457889999887654444444444443211 1344555555554 567777888877664
No 182
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=2.2 Score=44.56 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=80.8
Q ss_pred HHHHhCCChHHHHHHhhhc------ccChHHHHHHHHHHHHhcCCcccchhhhhcc-------CcHHHHHHHHh----cC
Q 015988 199 SIILGTNPIPSIVDLLIFC------KKSSKTAEKCTSLIESLVGFDEGRIVLTSEE-------GGVLAVVEVLE----NG 261 (397)
Q Consensus 199 ~~i~~~g~i~~Lv~ll~~~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~-------g~i~~Lv~lL~----~~ 261 (397)
..+...+++..++.+.... .+..++...|+++|+-+..-++.+.++.... .+|..++..-. -.
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 3344455556666665543 1224566777888777766676666654211 12333333221 13
Q ss_pred CHHHHHHHHHHHHHHhccCchhhH-----------------------------------HHHHHcCChHHHHHHhhcCC-
Q 015988 262 SLQAREHAVGALLMMCQSDRCKYR-----------------------------------EPILREGVIPGLLELTIQGT- 305 (397)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~r-----------------------------------~~i~~~g~v~~L~~ll~~~~- 305 (397)
+|+++..|+.+|.|+...+ ++.| .++...+||..|++++.-..
T Consensus 675 Dpei~~~AL~vIincVc~p-p~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPP-PTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred CHHHHHHHHhhhheeecCC-CCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 6999999999999985543 1222 33344679999999997744
Q ss_pred ----HHHHHHHHHHHHHhhcCCCCCccc
Q 015988 306 ----PKSQTKARTLLQLLRDSPYPRSEL 329 (397)
Q Consensus 306 ----~~~~~~A~~~L~~l~~~~~~~~~~ 329 (397)
+.+|.-|+.+|--|++++..++++
T Consensus 754 ~t~aD~IRalAc~~L~GLaR~~tVrQIl 781 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLARDDTVRQIL 781 (1516)
T ss_pred CCcHHHHHHHHHHHHhccccCcHHHHHH
Confidence 377888889998888888755443
No 183
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.70 E-value=0.73 Score=39.43 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=62.2
Q ss_pred ccchhhhhccCcHHHHHHHHhc---------CCHHHHHHHHHHHHHHhccCchhhHHHHHH-cCChHHHHHHhhcCCHHH
Q 015988 239 EGRIVLTSEEGGVLAVVEVLEN---------GSLQAREHAVGALLMMCQSDRCKYREPILR-EGVIPGLLELTIQGTPKS 308 (397)
Q Consensus 239 ~~~~~~~~~~g~i~~Lv~lL~~---------~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~~~~~~~ 308 (397)
.-...++ +.||+..|+++|.. .+......++.+|..|.... .++..+.+ .+.+..|+..+.+.+..+
T Consensus 98 ~Wv~~Fl-~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~--~G~~~v~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 98 SWVQEFL-ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK--YGLEAVLSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH--HHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred hHHHHhc-cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH--HHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence 3455666 78999999998853 23577888999999999874 67888886 789999999999999999
Q ss_pred HHHHHHHHHHhh
Q 015988 309 QTKARTLLQLLR 320 (397)
Q Consensus 309 ~~~A~~~L~~l~ 320 (397)
+..+..+|..++
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 184
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=1.2 Score=46.30 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHH
Q 015988 134 SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDL 213 (397)
Q Consensus 134 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~l 213 (397)
++-..++..++..|..+......+..+...+++...+..|++.++-+--+|+..+..|+.. ....+++.+.+.
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~ 810 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEE 810 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHH
Confidence 3445577888888888887655566667888999999999999888888888877777664 123456666553
Q ss_pred hhhcc--cChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH
Q 015988 214 LIFCK--KSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR 290 (397)
Q Consensus 214 l~~~~--~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~ 290 (397)
-.+.+ ...+-+.....++.++...-. -.... .+-.+..++..+++++...|..++..+.++|.-..-.+...+
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y--~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-- 886 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY--KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-- 886 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHH--HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH--
Confidence 32211 112222333455555422111 10000 011334444555566667789999999999986521222222
Q ss_pred cCChHHHHHHhh-cCCHHHHHHHHHHHHHhhcCC
Q 015988 291 EGVIPGLLELTI-QGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 291 ~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~ 323 (397)
..++..++.+.. ++++.+|+.|+.++..+-.+.
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 224555555543 478899999999999886654
No 185
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=15 Score=38.16 Aligned_cols=245 Identities=14% Similarity=0.158 Sum_probs=112.4
Q ss_pred ChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCch---------hhhhc--
Q 015988 95 DSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKP---------FISAS-- 163 (397)
Q Consensus 95 ~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~---------~i~~~-- 163 (397)
+.+...|+.++..+...+ -..+.. .+..|-.+++++...+|-.|.++|..++...+.+. .+.+.
T Consensus 259 emV~~EaArai~~l~~~~---~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~Nr 333 (865)
T KOG1078|consen 259 EMVIYEAARAIVSLPNTN---SRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNR 333 (865)
T ss_pred HHHHHHHHHHHhhccccC---Hhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhccccc
Confidence 335666777777765422 222222 66777778888888999999999999886433221 11111
Q ss_pred -CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc
Q 015988 164 -GAIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG 240 (397)
Q Consensus 164 -g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~ 240 (397)
=....+..+|+.++..-...-..-+.+...+ ++++...++ .+..|.. .. +.-...-+..|.++-....+
T Consensus 334 sIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvd--ai~sLc~---~f---p~k~~~~m~FL~~~Lr~eGg 405 (865)
T KOG1078|consen 334 SIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVD--AIRSLCL---KF---PRKHTVMMNFLSNMLREEGG 405 (865)
T ss_pred chhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHH--HHHHHHh---hc---cHHHHHHHHHHHHHHHhccC
Confidence 1334555666666654444444344433332 233222221 1222211 11 01111122222222111111
Q ss_pred chhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc-hhhHHHH------------HHcCChHHHHHHhhcCCHH
Q 015988 241 RIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDR-CKYREPI------------LREGVIPGLLELTIQGTPK 307 (397)
Q Consensus 241 ~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~r~~i------------~~~g~v~~L~~ll~~~~~~ 307 (397)
-.. ....+..++..+.. +++.++.++.-|+..-.... .+.--.+ ....-+..+...+.-.+..
T Consensus 406 ~e~---K~aivd~Ii~iie~-~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~i 481 (865)
T KOG1078|consen 406 FEF---KRAIVDAIIDIIEE-NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAI 481 (865)
T ss_pred chH---HHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhh
Confidence 110 00112333333332 33444544444444422210 0000011 1112344444544457889
Q ss_pred HHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHH
Q 015988 308 SQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMV 362 (397)
Q Consensus 308 ~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~ 362 (397)
+|-.|+.+|..+.... ......++.++..... +..+.. +.|.-.|+.+.
T Consensus 482 vRaaAv~alaKfg~~~----~~l~~sI~vllkRc~~--D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 482 VRAAAVSALAKFGAQD----VVLLPSILVLLKRCLN--DSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hHHHHHHHHHHHhcCC----CCccccHHHHHHHHhc--CchHHHHHHHHHHHHHhh
Confidence 9999999999998322 2222334444444442 334444 66777777766
No 186
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.48 E-value=1.5 Score=44.91 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=84.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc-----------CCHHHHHHHHHHHHhhc
Q 015988 124 ALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY-----------GSQQAKFDAVMALSNLS 192 (397)
Q Consensus 124 ~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~~~~~a~~aL~nLs 192 (397)
.+--++++|++++-+++..++.....|.. ..-+..++.+|+. .+.+.|..-..+|+..+
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvs----------srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVS----------SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhh----------hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 34445566677777777777776666653 3334455555532 23455666677777777
Q ss_pred CC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc-CCHHHHHHHH
Q 015988 193 TH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN-GSLQAREHAV 270 (397)
Q Consensus 193 ~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~a~ 270 (397)
.. ++. .+.+++.|++.+.+.. +......+..+.....-..+. ....+..|++-+.. .+.++.+.++
T Consensus 388 v~Fp~~-----aatvV~~ll~fisD~N--~~aas~vl~FvrE~iek~p~L-----r~~ii~~l~~~~~~irS~ki~rgal 455 (948)
T KOG1058|consen 388 VKFPEV-----AATVVSLLLDFISDSN--EAAASDVLMFVREAIEKFPNL-----RASIIEKLLETFPQIRSSKICRGAL 455 (948)
T ss_pred hcChHH-----HHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHhCchH-----HHHHHHHHHHhhhhhcccccchhHH
Confidence 64 432 2346778888887753 222222222222221111111 22345566665543 4567788999
Q ss_pred HHHHHHhccCchhhHH--HHHH--cCChHHHH
Q 015988 271 GALLMMCQSDRCKYRE--PILR--EGVIPGLL 298 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~--~i~~--~g~v~~L~ 298 (397)
|++..-|... .+++. .+++ -|-+|.+.
T Consensus 456 wi~GeYce~~-~~i~~~~k~i~~slGEvp~~~ 486 (948)
T KOG1058|consen 456 WILGEYCEGL-SEIQSVIKIIRQSLGEVPIVC 486 (948)
T ss_pred HHHHHHHhhh-HHHHHHHHHHHHhccccceeh
Confidence 9999998876 34554 2332 56666654
No 187
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.44 E-value=3.1 Score=41.84 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHH
Q 015988 135 PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDL 213 (397)
Q Consensus 135 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~l 213 (397)
++...+..|+..+.....+-+. ....++..++.++.+++..+|.+|+..|-.+|.+ ++....+ .+.|+++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHH
Confidence 4566777777777776543322 2344688899999999999999999999999986 4554444 4578888
Q ss_pred hhhcccC-hHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 015988 214 LIFCKKS-SKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE---NGSLQAREHAVGALLM 275 (397)
Q Consensus 214 l~~~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~---~~~~~v~~~a~~~L~~ 275 (397)
|.++++. ..++..++..|..+ .-.+.+..+...+. +++..+|+.++..|..
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~-----------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQ-----------DPKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 9875321 23344444444321 12345566666665 5677889998887754
No 188
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=92.29 E-value=11 Score=36.14 Aligned_cols=263 Identities=16% Similarity=0.137 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC------CChhHHHHHHHHHHhhhcChhhHHH-HHHcCCh
Q 015988 55 DPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA------PDSDHESALLALLNLAVKDEKNKIK-IVEAGAL 125 (397)
Q Consensus 55 ~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~------~~~~~~~a~~~L~~L~~~~~~~~~~-i~~~g~i 125 (397)
+..+...++.+|+++..+++..+....+. ...+++.+.. +......-++.|..+..-.+..|.. +++.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 34788999999999999998888776654 4444444422 2223555566666666555566665 4568999
Q ss_pred HHHHHhhCCC---------CH------HHHHHHHHHHHHHhcCCCCchhhh---hcCCHHHHHH----HHhc--CCHHHH
Q 015988 126 EPIISFLQSP---------DL------NLQEYAAAALLTLSASSVNKPFIS---ASGAIPLLVE----ILRY--GSQQAK 181 (397)
Q Consensus 126 ~~L~~lL~~~---------~~------~~~~~a~~~L~nLs~~~~~~~~i~---~~g~i~~L~~----lL~~--~~~~~~ 181 (397)
+.+..++... ++ +....++.++.|++.+..--...- ....+..+.+ .+.. .+.++.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elh 269 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELH 269 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHh
Confidence 9999998632 11 234567788888876543211111 1111111111 1111 122222
Q ss_pred HHHHHHHHh--------hcCC--chhHHH-H--HhCCChHHHHHHhhhc-------ccChHHHHHHHHHHHHhcCCcccc
Q 015988 182 FDAVMALSN--------LSTH--PDNLSI-I--LGTNPIPSIVDLLIFC-------KKSSKTAEKCTSLIESLVGFDEGR 241 (397)
Q Consensus 182 ~~a~~aL~n--------Ls~~--~~~~~~-i--~~~g~i~~Lv~ll~~~-------~~~~~~~~~a~~~L~nL~~~~~~~ 241 (397)
.++..-|.| ++.. .++..+ + .+..-++.+..+|... ......+...+.+|..++......
T Consensus 270 shav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~ 349 (532)
T KOG4464|consen 270 SHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVM 349 (532)
T ss_pred hccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHH
Confidence 222222222 1211 122222 1 1122344455555332 112345677888999999999888
Q ss_pred hhhhhccCcHHHHHHHHhcCC--HHHHHHHHHHHHHHhccCchhhHHHH--HH-cCChHHHHHHhhcCCHHHHHHHHHHH
Q 015988 242 IVLTSEEGGVLAVVEVLENGS--LQAREHAVGALLMMCQSDRCKYREPI--LR-EGVIPGLLELTIQGTPKSQTKARTLL 316 (397)
Q Consensus 242 ~~~~~~~g~i~~Lv~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~r~~i--~~-~g~v~~L~~ll~~~~~~~~~~A~~~L 316 (397)
+... ...++|+|.+.-+.+. ..+|...++.+......-+ +...++ += .--++.+++..--++...-.++.++|
T Consensus 350 Rkyl-r~qVLPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K-~vaAEfLFvLCKesV~rmIKYtGyGnaAGllA~rGll 427 (532)
T KOG4464|consen 350 RKYL-RQQVLPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVK-DVAAEFLFVLCKESVNRMIKYTGYGNAAGLLAARGLL 427 (532)
T ss_pred HHHH-HHhcCCchhhhhcCcchhHHHHHhhHhheeccchhhh-hhhHHHHHHHhhcchhhhhhhcccccHHHHHHhhhhh
Confidence 8877 5568888876655433 3444444444444322111 111111 10 22366677777667766666666666
Q ss_pred HHh
Q 015988 317 QLL 319 (397)
Q Consensus 317 ~~l 319 (397)
.-.
T Consensus 428 ~~~ 430 (532)
T KOG4464|consen 428 AGG 430 (532)
T ss_pred ccC
Confidence 544
No 189
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.17 E-value=0.91 Score=40.15 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCcccchhhhhccCc-------HHHHHHHHh-cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCCh
Q 015988 223 TAEKCTSLIESLVGFDEGRIVLTSEEGG-------VLAVVEVLE-NGSLQAREHAVGALLMMCQSDRCKYREPILREGVI 294 (397)
Q Consensus 223 ~~~~a~~~L~nL~~~~~~~~~~~~~~g~-------i~~Lv~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v 294 (397)
-+.-|+.+|+.|+..+.|...+. ..+- +..|+++|. ..++..||-|+-+|.+||..+..-.|..-.+.+.|
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliL-aTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLIL-ATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhheeccCcceee-eCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 35889999999999999988877 5543 334444443 35688999999999999998854344444468899
Q ss_pred HHHHHHhhcCCHHHHHH
Q 015988 295 PGLLELTIQGTPKSQTK 311 (397)
Q Consensus 295 ~~L~~ll~~~~~~~~~~ 311 (397)
..|+.++.......+..
T Consensus 219 ~~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 219 SHLIAFIEDAEQNAHQV 235 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999997755544433
No 190
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.15 E-value=0.45 Score=33.92 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccC
Q 015988 181 KFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEG 249 (397)
Q Consensus 181 ~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g 249 (397)
.+.|++++.+++..+.....+-+.++++.++++..+. +...++-.|..+|.-++...++.+.+- +.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s-~v~siRGT~fy~Lglis~T~~G~~~L~-~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENS-PVLSIRGTCFYVLGLISSTEEGAEILD-ELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhC-CccchHHHHHHHHHHHhCCHHHHHHHH-HcC
Confidence 4679999999999888777777889999999999886 356788899999998898888887654 544
No 191
>PRK14707 hypothetical protein; Provisional
Probab=91.99 E-value=29 Score=40.39 Aligned_cols=281 Identities=15% Similarity=0.101 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHH-hHHHHHHhhcC-CCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHh
Q 015988 55 DPDLKLEAAREIRRLTKTSQRCRRQLAQ-AVQPLVLMLRA-PDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISF 131 (397)
Q Consensus 55 ~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l 131 (397)
+..+...|+..|..-...+++.+..+.. ++...++-|+. ++. ....|+..|..-..++++.+..+-..|+-..|-.+
T Consensus 345 d~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnal 424 (2710)
T PRK14707 345 DNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNAL 424 (2710)
T ss_pred CchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHh
Confidence 4455555666665555555566655543 37777777776 554 56667777766666688888888777766666666
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhc-CCHHHHHHHHHH-HHhhcCCchhHHHHHhCCChH
Q 015988 132 LQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRY-GSQQAKFDAVMA-LSNLSTHPDNLSIILGTNPIP 208 (397)
Q Consensus 132 L~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~a-L~nLs~~~~~~~~i~~~g~i~ 208 (397)
-+-++..+-..++..|.--..++ +.+..+--.+ +...+..|.. ++..+-..++.. ...|+...+.++.+--.++ .
T Consensus 425 sKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~-~ 502 (2710)
T PRK14707 425 AKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEV-V 502 (2710)
T ss_pred hcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHH-H
Confidence 66677666666666665543333 4444443333 3333344433 444444444444 4456666665544433332 3
Q ss_pred HHHHHhhhcccChHHHHHHHHHHH-HhcCCcccchhhhhccCcHHHHHHHH-hcCCHHHHHHHHHHHHHHhccCchhhHH
Q 015988 209 SIVDLLIFCKKSSKTAEKCTSLIE-SLVGFDEGRIVLTSEEGGVLAVVEVL-ENGSLQAREHAVGALLMMCQSDRCKYRE 286 (397)
Q Consensus 209 ~Lv~ll~~~~~~~~~~~~a~~~L~-nL~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~~L~~L~~~~~~~~r~ 286 (397)
.-++-|+..+ +......++..|. .+. .+......+ ...-+..+++-| +.++....+.++..|..+.... ...+.
T Consensus 503 ~~L~aLSK~P-d~~~c~~A~~~lA~rl~-~~~~l~~~~-~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~-~~~~~ 578 (2710)
T PRK14707 503 IALHSLSKWP-DTPICAEAASALAERVV-DELQLRKAF-DAHQVVNTLKALSKWPDKQLCAVAASGLAERLADE-PQLPK 578 (2710)
T ss_pred HHHHHhhcCC-CcHHHHHHHHHHHHHhc-cchhhhhhh-hhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcc-hhhHH
Confidence 3334455543 3333333333333 333 222222222 122233344444 3455556667777777765544 24444
Q ss_pred HHHHcCChHHHHHHhhc--CCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhh
Q 015988 287 PILREGVIPGLLELTIQ--GTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNII 342 (397)
Q Consensus 287 ~i~~~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~ 342 (397)
.+- .-.|..++..+.. +++..++.+.++-..+...+..+..+....+..++..+.
T Consensus 579 ~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~q~lan~lNALS 635 (2710)
T PRK14707 579 DLH-RQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKELDPVDVTNVLNALS 635 (2710)
T ss_pred hhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhh
Confidence 443 4457777777755 566777777777778888777777888888888877774
No 192
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.76 E-value=2.5 Score=41.39 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=76.3
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhhcChhh-------------HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015988 84 VQPLVLMLRAPDSDHESALLALLNLAVKDEKN-------------KIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTL 150 (397)
Q Consensus 84 v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~-------------~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL 150 (397)
+..|+++|.+++. ...++..+.-+..+.+.. |++++. ..+|+|++..+..+.+.+..-+.+|.++
T Consensus 273 ~~~L~~lL~~~~~-g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 273 LDKLLELLSSPEL-GQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred HHHHHHHhCChhh-HHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 5556666666444 777888888887752332 223322 3467777777777766788888888888
Q ss_pred hcCCCCchhhhh-cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc
Q 015988 151 SASSVNKPFISA-SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195 (397)
Q Consensus 151 s~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~ 195 (397)
..+-+....+-+ ...+|.|++-|..++.+++..++.+|..+....
T Consensus 351 l~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 351 LKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 775553333223 568889999999999999999999999887754
No 193
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=4 Score=37.55 Aligned_cols=138 Identities=21% Similarity=0.275 Sum_probs=94.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-HHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQ-LAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIV 120 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~-l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~ 120 (397)
.+...+..|.+++|+....++..|..++...++...- +.+.|-.+++-+++... +...|+.++..++.. ....+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~---ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSS---LNNSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 4566788889999999999999999999876554433 44448888888888444 677888888888762 222333
Q ss_pred HcCChHHHHHhh-C---CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015988 121 EAGALEPIISFL-Q---SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNL 191 (397)
Q Consensus 121 ~~g~i~~L~~lL-~---~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nL 191 (397)
+ ....++..| . .++.-+++.|-.+|..+..+-.- ..+++.|+..+...++.++..++.+..+.
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 2 333344333 2 33556888888899888754321 23567777778888888888887665554
No 194
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.15 E-value=0.72 Score=40.21 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc-----CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHH
Q 015988 223 TAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN-----GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGL 297 (397)
Q Consensus 223 ~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L 297 (397)
-+-.++.+|..++..++.+..++ ++...-.+..+|.. +..-.|..+++++..|..+++.+.-..+....++|.+
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl-~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFL-DAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeee-ecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 45778888988999999999988 67665556666542 2256788899999999998876666666778999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 298 LELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 298 ~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
++++..++..-+.-|..++..+-.+.
T Consensus 195 LrIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998885554
No 195
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=91.10 E-value=10 Score=36.34 Aligned_cols=150 Identities=13% Similarity=0.167 Sum_probs=90.6
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhhhChHHHHHH-HHhHHHHHHhhc--C--------CCh-hHHHHHHHHHHhhhc
Q 015988 45 HRALHLIQSDD-PDLKLEAAREIRRLTKTSQRCRRQL-AQAVQPLVLMLR--A--------PDS-DHESALLALLNLAVK 111 (397)
Q Consensus 45 ~~lv~lL~s~~-~~~~~~a~~~L~~l~~~~~~~~~~l-~~~v~~Lv~lL~--~--------~~~-~~~~a~~~L~~L~~~ 111 (397)
..+.+-|..+. ..-+..++..+.-++++........ .+.+..|+.+-+ . +|. +...+..+|.|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34555555554 3445667777777776531111111 111333332221 1 233 578899999999999
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCC-----CHHHHHHHHHHHHHHhcCC-CCchhh-hhcCCHHHHHHHHhcC--------
Q 015988 112 DEKNKIKIVEAGALEPIISFLQSP-----DLNLQEYAAAALLTLSASS-VNKPFI-SASGAIPLLVEILRYG-------- 176 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~nLs~~~-~~~~~i-~~~g~i~~L~~lL~~~-------- 176 (397)
+...|..+.+......+++.+... ..++...-++.|.-++.-. +.|..+ .+.++++.+.+.|.+.
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 999999999988777777766422 2234555556666655433 445544 4789999999988652
Q ss_pred -C------HHHHHHHHHHHHhhcCC
Q 015988 177 -S------QQAKFDAVMALSNLSTH 194 (397)
Q Consensus 177 -~------~~~~~~a~~aL~nLs~~ 194 (397)
+ ......++.++.|++.+
T Consensus 208 ~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHhheeec
Confidence 1 13345677788888765
No 196
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.76 E-value=3.3 Score=44.63 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcC-CCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHH
Q 015988 53 SDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRA-PDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPII 129 (397)
Q Consensus 53 s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~ 129 (397)
..+|++|..|..+|+++.--+ ..+.+. .|.|+..+.. +.. ++-+++-+++-++...+..-. -+.+.|.
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iS----a~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly 1004 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCIS----AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLY 1004 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc-----hhhHHHH
Confidence 347899999999999988543 233343 8999999985 433 688888888888875553222 2456788
Q ss_pred HhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 015988 130 SFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 130 ~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~ 194 (397)
+.|..+++.++..|+-+|.+|-.++-. .-.|.++.+...+.+++.+++.-|=.....|+..
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILndmi----KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILNDMI----KVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhhhh----HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 899999999999999999999876543 3469999999999999999998888777777653
No 197
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.62 E-value=7.7 Score=36.05 Aligned_cols=162 Identities=15% Similarity=0.083 Sum_probs=97.0
Q ss_pred HhhcCCC-hhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC--Cch-------
Q 015988 89 LMLRAPD-SDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSV--NKP------- 158 (397)
Q Consensus 89 ~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~------- 158 (397)
..+++++ .+++.|+.+|+..+--+.+.-. ..++.+...++.+++.++..|+.++..+...-. .-.
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 4555533 3799999999998875542221 236667777777889999999999999865221 111
Q ss_pred hhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcc--cChHHHHHHHHH-HHHhc
Q 015988 159 FISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCK--KSSKTAEKCTSL-IESLV 235 (397)
Q Consensus 159 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~~-L~nL~ 235 (397)
.......+..+.+.+.+.+++++..|+..+..|--...... ...++..|+-+-.++. ++..+ ..++.. +-..+
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~L-rQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRL-RQCLSVFFPVYA 184 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHH-HHHHHHHHHHHH
Confidence 12234567778888888999999999988888754322111 1233444444433332 12333 344443 33445
Q ss_pred CCcccchhhhhccCcHHHHHHHHhc
Q 015988 236 GFDEGRIVLTSEEGGVLAVVEVLEN 260 (397)
Q Consensus 236 ~~~~~~~~~~~~~g~i~~Lv~lL~~ 260 (397)
.........+ ....++.+..+...
T Consensus 185 ~s~~~~Q~~l-~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 185 SSSPENQERL-AEAFLPTLRTLSNA 208 (298)
T ss_pred cCCHHHHHHH-HHHHHHHHHHHHhC
Confidence 5554444444 45666776666654
No 198
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.30 E-value=13 Score=33.44 Aligned_cols=207 Identities=18% Similarity=0.216 Sum_probs=116.8
Q ss_pred CCCCccchhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhh
Q 015988 33 FSSSSSSASSAVHRALHLIQS--DDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLA 109 (397)
Q Consensus 33 ~~~~~~~~~~~l~~lv~lL~s--~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~ 109 (397)
+.-..+.+...++.++.-+.. ..+.+|..|..+|..+... +.. +.+-...+.+-. +++....++..+-
T Consensus 58 y~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~--~~~-------~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 58 YVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP--ESL-------EILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred hhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcch--hhH-------HHHHHHhcCCccccchHHHHHHHHHH
Confidence 334556677889999887764 4678889999999988732 222 333333323111 2444444455444
Q ss_pred hcChhhHH----HH--------HHcCChHHHHHhhCCCCHH-H-HHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc
Q 015988 110 VKDEKNKI----KI--------VEAGALEPIISFLQSPDLN-L-QEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY 175 (397)
Q Consensus 110 ~~~~~~~~----~i--------~~~g~i~~L~~lL~~~~~~-~-~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~ 175 (397)
+.+.-.+. -. ...+-+..|-..|...+.. . +..+.-.|.|+ .....+..+++-+..
T Consensus 129 ~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 129 WKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLAD 198 (289)
T ss_pred HhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhccc
Confidence 32110000 00 0001122222222111111 1 11111111111 112245555666666
Q ss_pred CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHH
Q 015988 176 GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVV 255 (397)
Q Consensus 176 ~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv 255 (397)
++.-.|..++.++.-|- ..-.|+.|.+.|....+.+-++..|..+|..+ . ++.++..|.
T Consensus 199 ~SalfrhEvAfVfGQl~----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI----------a-~e~~~~vL~ 257 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQ----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAI----------A-DEDCVEVLK 257 (289)
T ss_pred chHHHHHHHHHHHhhcc----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhh----------c-CHHHHHHHH
Confidence 66677777776655432 23468899998888777788889999999853 3 566889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 256 EVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 256 ~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
+++..+++.+++.+.-+|..+-..
T Consensus 258 e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHh
Confidence 999888889999888888776544
No 199
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=90.16 E-value=2.7 Score=44.11 Aligned_cols=185 Identities=14% Similarity=0.152 Sum_probs=112.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhhcChhh-------------HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015988 84 VQPLVLMLRAPDSDHESALLALLNLAVKDEKN-------------KIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTL 150 (397)
Q Consensus 84 v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~-------------~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL 150 (397)
...++.+|+.++. -..++..+.-+..+++.. |++++ ...+|.|++.....+...+..-+.+|.+.
T Consensus 817 a~klld~Ls~~~~-g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 817 AEKLLDLLSGPST-GSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHHhcCCccc-cchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 4566777766443 334444444444433322 22222 35678888888755555555556666666
Q ss_pred hcCCCCchhhh--hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccC-hHHHHHH
Q 015988 151 SASSVNKPFIS--ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKS-SKTAEKC 227 (397)
Q Consensus 151 s~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~~~a 227 (397)
-.+-+ +..+. -+..+|.|++.|.-++..+|..+..+|.-+..-.+.-..---.-.++.++.+=++.+.+ ..+++.|
T Consensus 895 l~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~A 973 (1030)
T KOG1967|consen 895 LTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDA 973 (1030)
T ss_pred HhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHH
Confidence 54322 22222 14567888888888999999999988877654322111111123456666655554322 5678899
Q ss_pred HHHHHHhcC-CcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHH
Q 015988 228 TSLIESLVG-FDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGA 272 (397)
Q Consensus 228 ~~~L~nL~~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~ 272 (397)
+++|..|.. .+...-.-. ...++..|...|+++-..+|+.|+.+
T Consensus 974 LqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 974 LQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 999999987 444444333 55688899999987777788888764
No 200
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.09 E-value=24 Score=36.02 Aligned_cols=175 Identities=18% Similarity=0.179 Sum_probs=102.3
Q ss_pred chhhhHHHHHHHhcCCC--------------------HHHHHHHHHHHHHHhhhChHHHHHHH-----HhHHHHHHhhcC
Q 015988 39 SASSAVHRALHLIQSDD--------------------PDLKLEAAREIRRLTKTSQRCRRQLA-----QAVQPLVLMLRA 93 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~--------------------~~~~~~a~~~L~~l~~~~~~~~~~l~-----~~v~~Lv~lL~~ 93 (397)
.+...++.++.+++..+ ++++..|+.+|+-+..+..-+-..+. +.+..++..+..
T Consensus 521 d~~~~~eeil~li~~s~~~~~e~~~~l~~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~ 600 (745)
T KOG0301|consen 521 DEINGLEEILSLIKNSSHYSSEVLQSLLALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNA 600 (745)
T ss_pred chhhhHHHHHHhhcCCCCccchhHHHHHHHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhccccc
Confidence 34556777777776543 23344566666666554322222111 114455555543
Q ss_pred CChhHHHHHHHHHHhhhcChhhHHHHHHc--CChHHHHHhhCCCCHHHHHHHHHHHHHHhc--CCCCchhhhhcCCHHHH
Q 015988 94 PDSDHESALLALLNLAVKDEKNKIKIVEA--GALEPIISFLQSPDLNLQEYAAAALLTLSA--SSVNKPFISASGAIPLL 169 (397)
Q Consensus 94 ~~~~~~~a~~~L~~L~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~L 169 (397)
....+..++++|.|+.. ++.++..+... -.+..+...-...+..++...+....|.+. ...+- +.++.+.|
T Consensus 601 ~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l 675 (745)
T KOG0301|consen 601 DPANQLLVVRCLANLFS-NPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVL 675 (745)
T ss_pred chhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHH
Confidence 22247889999999998 57788777653 122222222223445666655555556543 11111 14555555
Q ss_pred HHHHhc-----CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcc
Q 015988 170 VEILRY-----GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCK 218 (397)
Q Consensus 170 ~~lL~~-----~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~ 218 (397)
...+.. .+.+.....+.+|.+|+..+....++...-.++.+++-+++..
T Consensus 676 ~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 676 LSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhc
Confidence 554432 3456777888999999999888888888667888888887753
No 201
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=89.71 E-value=5.8 Score=40.62 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=88.8
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCchhHHH
Q 015988 122 AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEIL-RYGSQQAKFDAVMALSNLSTHPDNLSI 200 (397)
Q Consensus 122 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~aL~nLs~~~~~~~~ 200 (397)
...+|.|..-++..+..+|+.++..+...+..-+ ..++..-.+|.+-.+. +..+..++.+++.++..+.. .
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q------~ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ------R 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH------H
Confidence 4456677777778888999999998888875333 3344555677776654 45678899999999998882 2
Q ss_pred HHhCCChHHHHHHhhhc-ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC
Q 015988 201 ILGTNPIPSIVDLLIFC-KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS 262 (397)
Q Consensus 201 i~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 262 (397)
+-...+++.+.-+++.. ..++.++...+++..++.....+...++ .+.++|.++.+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~-~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVM-AENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeee-hhhhhhhhhhhhhccc
Confidence 22334455555555443 3356788888888888866555532233 4678888888877655
No 202
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.64 E-value=1.8 Score=35.43 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=63.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc-CCHHHHHHHHHHHHHhhcC
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ-GTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~ 322 (397)
++..|..-|.++++.++..|+.+|..+..+.+......+.+...+..|++++.. .++.++++...++...+..
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 567777888889999999999999999988766788888888999999999988 7889999999998877543
No 203
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.89 E-value=2.1 Score=37.89 Aligned_cols=80 Identities=26% Similarity=0.211 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhcCCHHH-------HHHHHh-cCCHHHHHHHHHHHHhhcCCchhH-HHHH-hCCCh
Q 015988 138 NLQEYAAAALLTLSASSVNKPFISASGAIPL-------LVEILR-YGSQQAKFDAVMALSNLSTHPDNL-SIIL-GTNPI 207 (397)
Q Consensus 138 ~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~-------L~~lL~-~~~~~~~~~a~~aL~nLs~~~~~~-~~i~-~~g~i 207 (397)
.-|..|+.+|+.|+..+.|...+...+-... |+++|. .+++..|+-|+..|.+|+..++.. ..+. ..+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3588999999999999999888887664333 333332 367889999999999999876543 3333 47899
Q ss_pred HHHHHHhhhc
Q 015988 208 PSIVDLLIFC 217 (397)
Q Consensus 208 ~~Lv~ll~~~ 217 (397)
..|+.++...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 204
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.77 E-value=0.31 Score=47.10 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCCCchhhh-hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-----ch---hHHHHHhCCChHHHHH
Q 015988 142 YAAAALLTLSASSVNKPFIS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-----PD---NLSIILGTNPIPSIVD 212 (397)
Q Consensus 142 ~a~~~L~nLs~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-----~~---~~~~i~~~g~i~~Lv~ 212 (397)
.|.+++.-+..+...+.... -..+...++..+.+.....++.++|++.|++.. +. ....+... .+..+..
T Consensus 410 aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~ 488 (728)
T KOG4535|consen 410 AASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLR 488 (728)
T ss_pred HHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHH
Confidence 33344333344443333222 334445555566666778899999999998742 22 11222211 2233333
Q ss_pred Hh-hhcccChHHHHHHHHHHHHhcCCcc-----cchhhhhccCcHHHHHHH-HhcCCHHHHHHHHHHHHHHhccCchhhH
Q 015988 213 LL-IFCKKSSKTAEKCTSLIESLVGFDE-----GRIVLTSEEGGVLAVVEV-LENGSLQAREHAVGALLMMCQSDRCKYR 285 (397)
Q Consensus 213 ll-~~~~~~~~~~~~a~~~L~nL~~~~~-----~~~~~~~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~L~~~~~~~~r 285 (397)
.- ..+.+..++...+.+.|.|+...-. +-..+ .+|.+..++.- .-.+...|+=+++.++.||-.+..-..+
T Consensus 489 ~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~--~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 489 SAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEI--IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHH--HHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 22 2233446788899999998865332 11111 12222222222 1234577899999999999987521122
Q ss_pred HHHHHcCChHHHHHHhhc-CCHHHHHHHHHHHHHh
Q 015988 286 EPILREGVIPGLLELTIQ-GTPKSQTKARTLLQLL 319 (397)
Q Consensus 286 ~~i~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l 319 (397)
..=+..-+.+.|..++.+ .+-.+|-+|+++|..-
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 222333466777777755 5668888888887543
No 205
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=88.72 E-value=12 Score=38.34 Aligned_cols=140 Identities=12% Similarity=0.111 Sum_probs=97.9
Q ss_pred hhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc
Q 015988 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG 240 (397)
Q Consensus 161 ~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~ 240 (397)
+...+++.|..-+++.+..+++.++..+..++..-+ ...++.-+++.|.++-... ....++..++-++..+. +.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~t-t~~~vkvn~L~c~~~l~---q~ 459 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKT-TNLYVKVNVLPCLAGLI---QR 459 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcc-cchHHHHHHHHHHHHHH---HH
Confidence 344567777777788889999999999988887544 3345555677777774333 45677788888888776 11
Q ss_pred chhhhhccCcHHHHHHHHh---cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHH
Q 015988 241 RIVLTSEEGGVLAVVEVLE---NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKA 312 (397)
Q Consensus 241 ~~~~~~~~g~i~~Lv~lL~---~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A 312 (397)
.+...+++.+..+++ ..++.+....+.+..++....+ .+ ..+.-+.++|.++.+.....-...++.
T Consensus 460 ----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~ 528 (700)
T KOG2137|consen 460 ----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY-SG-VEVMAENVLPLLIPLSVAPSLNGEQYN 528 (700)
T ss_pred ----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cc-eeeehhhhhhhhhhhhhcccccHHHHH
Confidence 123345555555554 5789999999999999887653 22 455667889999998877765566655
No 206
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.55 E-value=8.3 Score=39.16 Aligned_cols=167 Identities=14% Similarity=0.127 Sum_probs=96.6
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHH---cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh
Q 015988 86 PLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVE---AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA 162 (397)
Q Consensus 86 ~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~---~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 162 (397)
.|-.+++.+...+.-|+.+|+.+..+...+-..+.. ...+..++..+. .++..+..++++|.|+-.+..++..+..
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 333444445555888999999998855444333332 234555555555 4566677889999999887666665543
Q ss_pred cCCHHHHHHHH---hc-CCHHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhc---ccChHHHHHHHHHHHH
Q 015988 163 SGAIPLLVEIL---RY-GSQQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFC---KKSSKTAEKCTSLIES 233 (397)
Q Consensus 163 ~g~i~~L~~lL---~~-~~~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~n 233 (397)
. ...+...+ ++ .+..++...+....|++.. .++-+ .|+.+.|...+... .++-......+.+|.+
T Consensus 628 ~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Algt 701 (745)
T KOG0301|consen 628 R--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGT 701 (745)
T ss_pred H--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Confidence 3 22222221 22 2345555444445555532 11111 45555555555432 1222345667888889
Q ss_pred hcCCcccchhhhhccCcHHHHHHHHhc
Q 015988 234 LVGFDEGRIVLTSEEGGVLAVVEVLEN 260 (397)
Q Consensus 234 L~~~~~~~~~~~~~~g~i~~Lv~lL~~ 260 (397)
|+..+....++. ..-.+..+..-+++
T Consensus 702 L~t~~~~~~~~A-~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 702 LMTVDASVIQLA-KNRSVDSIAKKLKE 727 (745)
T ss_pred hccccHHHHHHH-HhcCHHHHHHHHHH
Confidence 998888888877 44566777777664
No 207
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.91 E-value=2.7 Score=34.19 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=60.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc------CCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ------GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 321 (397)
++..+..-|.++++.++..|+.+|..+..+-+......|.+.+.+.-|++++.. .++.|+++...++..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999999887666788888888999999999953 567999999998876654
No 208
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.80 E-value=3.2 Score=33.44 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=60.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc---CCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ---GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~---~~~~~~~~A~~~L~~l~~ 321 (397)
++..|...|+++++.++..|+.+|..+..+.+......+.+...+..|++++.. .++.+++++..++.....
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 567888888899999999999999999988765577888887777789999875 577999999999887754
No 209
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.76 E-value=15 Score=38.94 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=110.5
Q ss_pred CCccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh---HHHHHHhh-cCCCh-hHHHHHHHHHHhh
Q 015988 35 SSSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA---VQPLVLML-RAPDS-DHESALLALLNLA 109 (397)
Q Consensus 35 ~~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~---v~~Lv~lL-~~~~~-~~~~a~~~L~~L~ 109 (397)
++..+.....+.+-..+.+.+|..|.+|+..+.....+.. ....... +..+.... .+.+. +...|+..|..++
T Consensus 246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia 323 (815)
T KOG1820|consen 246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIA 323 (815)
T ss_pred chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 3333444445566666778899999999999999998753 1111111 33333332 23333 5777888888888
Q ss_pred hcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 110 VKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALS 189 (397)
Q Consensus 110 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~ 189 (397)
........ =+..+..+.++..+......++..+..++-.... ...-...++.+..+++++++.++..+...+.
T Consensus 324 ~~lr~~~~-~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~ 396 (815)
T KOG1820|consen 324 KKLRPLFR-KYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLD 396 (815)
T ss_pred HhcchhhH-HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 74433311 1224677888888887777777766665555443 1112345677778889999999888766655
Q ss_pred hhcCCchh--HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh
Q 015988 190 NLSTHPDN--LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 190 nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL 234 (397)
......+. ...-.-.+.++.++....+. +..++..+..++.-+
T Consensus 397 r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~--~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 397 RKLRKLGPKTVEKETVKTLVPHLIKHINDT--DKDVRKAALEAVAAV 441 (815)
T ss_pred HHHhhcCCcCcchhhHHHHhHHHhhhccCC--cHHHHHHHHHHHHHH
Confidence 54432221 11111123455555555443 345666666665533
No 210
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.51 E-value=3.6 Score=30.81 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=53.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcCh
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDE 113 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~ 113 (397)
..++..+..+.++.+.+|-+++..|+++..........+...+..+...|+++|. +--.|+..|..|+...+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 4566788888888899999999999999987641111222226777788888665 67889999999987544
No 211
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.37 E-value=3 Score=34.11 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=61.6
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc-CCHHHHHHHHHHHHHhhc
Q 015988 249 GGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ-GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 249 g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 321 (397)
.++..|..-|.++++.++..|+.+|..+..+.+......+.+.+.+..|++++.. .++.+++++..++..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4677888888899999999999999999887655677888888999999998864 677999999998877754
No 212
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.22 E-value=52 Score=37.09 Aligned_cols=237 Identities=17% Similarity=0.152 Sum_probs=118.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHhHHHHHHhhcC-CChhHHH---HHHHHHHhhhc--Ch
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQ--RCRRQLAQAVQPLVLMLRA-PDSDHES---ALLALLNLAVK--DE 113 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~--~~~~~l~~~v~~Lv~lL~~-~~~~~~~---a~~~L~~L~~~--~~ 113 (397)
..++.|+..+.+..|.+|+.++.+|..+.++.+ +..+.+.+.-..+.+..++ .+.+++. ++.+|..++.. +.
T Consensus 1039 eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1039 EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 345567777778889999999999999998742 2222233223333444444 3344444 34455554431 11
Q ss_pred hh--HHHHHHcCChHHHHH--hhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHH-H------
Q 015988 114 KN--KIKIVEAGALEPIIS--FLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAK-F------ 182 (397)
Q Consensus 114 ~~--~~~i~~~g~i~~L~~--lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~-~------ 182 (397)
.+ +..-+-...+|.|+. ++ +.-++++..++.++..|+.+....-+-.-+..++.|++....-.+.+. +
T Consensus 1119 ~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~ 1197 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLI 1197 (1702)
T ss_pred CCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhh
Confidence 11 000001112233322 12 446789999999999998765432222234556666666554333221 2
Q ss_pred ----HHHHHHH-hhcCCchh------HHHHHh----CCChHHHHHHhhhcccChHHHHHHHHHHHHhcC-Ccccchhhhh
Q 015988 183 ----DAVMALS-NLSTHPDN------LSIILG----TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG-FDEGRIVLTS 246 (397)
Q Consensus 183 ----~a~~aL~-nLs~~~~~------~~~i~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~-~~~~~~~~~~ 246 (397)
+|+..++ +.+.+... +-..++ ...+|.+.++++++- .-.....|...+.-|+. .....+-.
T Consensus 1198 ~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV-gl~Tkvg~A~fI~~L~~r~~~emtP~-- 1274 (1702)
T KOG0915|consen 1198 NIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV-GLGTKVGCASFISLLVQRLGSEMTPY-- 1274 (1702)
T ss_pred hhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-CCCcchhHHHHHHHHHHHhccccCcc--
Confidence 2222222 12222111 111111 234566666666541 11122333333333322 11111111
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCch
Q 015988 247 EEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRC 282 (397)
Q Consensus 247 ~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~ 282 (397)
....+..++..++..++.++...+.++..|.....+
T Consensus 1275 sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1275 SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 122456666666777888888888888888877643
No 213
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.17 E-value=4.7 Score=43.49 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=101.8
Q ss_pred CHHHHHHHHhc----CCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc
Q 015988 165 AIPLLVEILRY----GSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE 239 (397)
Q Consensus 165 ~i~~L~~lL~~----~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~ 239 (397)
..|.+++.++. ++|+++..|.-+|..+..- .+. .+ .-++.|...+... +.+.++.++.-.++-|+..-.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ce-s~l~llftimeks-p~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CE-SHLPLLFTIMEKS-PSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HH-HHHHHHHHHHhcC-CCceeeecchheccchhhhcc
Confidence 45555566633 5789999999899887653 332 22 2367788888764 456677777777777765544
Q ss_pred cchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 240 GRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 240 ~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
+-.. -.-+.|...|...++.+|+.|+.+|.+|-..+ .|.-.|.++.+...+.++++.++.-|-.-..-+
T Consensus 994 nlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 994 NLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred cccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 4322 24468888888999999999999999998764 344479999999999999999999998555555
Q ss_pred hcC
Q 015988 320 RDS 322 (397)
Q Consensus 320 ~~~ 322 (397)
+..
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 443
No 214
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.03 E-value=2.3 Score=44.37 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=102.5
Q ss_pred hhhcCCHHHHHHHHhc--------CCHHHHHHHHHHHHhhcCCchhHHHHHh--------CCChHHHHHHhhh--cccCh
Q 015988 160 ISASGAIPLLVEILRY--------GSQQAKFDAVMALSNLSTHPDNLSIILG--------TNPIPSIVDLLIF--CKKSS 221 (397)
Q Consensus 160 i~~~g~i~~L~~lL~~--------~~~~~~~~a~~aL~nLs~~~~~~~~i~~--------~g~i~~Lv~ll~~--~~~~~ 221 (397)
+...+++..++.+..- +..+....|+..|+-+...++.+..+.. ..+|..++..-.. ...++
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 3344555566665542 2346677889999888888888877764 1244444443221 22257
Q ss_pred HHHHHHHHHHHHhcCCc-ccchh----------------------------------hhhccCcHHHHHHHHhcCC----
Q 015988 222 KTAEKCTSLIESLVGFD-EGRIV----------------------------------LTSEEGGVLAVVEVLENGS---- 262 (397)
Q Consensus 222 ~~~~~a~~~L~nL~~~~-~~~~~----------------------------------~~~~~g~i~~Lv~lL~~~~---- 262 (397)
.++..|+++|-|+...+ +++.. .++...+|..|+.+|....
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~ 756 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT 756 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence 89999999999985544 33222 2335678999999998543
Q ss_pred -HHHHHHHHHHHHHHhccCchhhHHHHHHcCChH--HHHHHhhc--------CCHHHHHHHHHHHHHhhcC
Q 015988 263 -LQAREHAVGALLMMCQSDRCKYREPILREGVIP--GLLELTIQ--------GTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 263 -~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~--~L~~ll~~--------~~~~~~~~A~~~L~~l~~~ 322 (397)
..++..|+.+|.-|++.+ ..|+.+.+.-.+. .+..++.+ ......+.|+.+|......
T Consensus 757 aD~IRalAc~~L~GLaR~~--tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~~g~ 825 (1516)
T KOG1832|consen 757 ADCIRALACRVLLGLARDD--TVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEAQGT 825 (1516)
T ss_pred HHHHHHHHHHHHhccccCc--HHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHHhCC
Confidence 568899999999999987 7888777643222 22223322 1234455677788877655
No 215
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.84 E-value=51 Score=35.87 Aligned_cols=248 Identities=18% Similarity=0.194 Sum_probs=138.2
Q ss_pred hhhhHHHHHH-HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC-CChhHHHHHHHHHHhhhc--Ch
Q 015988 40 ASSAVHRALH-LIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA-PDSDHESALLALLNLAVK--DE 113 (397)
Q Consensus 40 ~~~~l~~lv~-lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~--~~ 113 (397)
+-.+++.|-. +|++.+.+.+...+..+..+....+++.....+. +|.++.-+.. |..++..-+..|-..... .-
T Consensus 464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncv 543 (2799)
T KOG1788|consen 464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCV 543 (2799)
T ss_pred chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccC
Confidence 3445555555 5677888899999999999998888888887775 8988888877 666565555544332220 00
Q ss_pred hhHHHHHHcCChHHHHHhhCCC-CHHHHHHHHHHHHHHhc-CCCCchhhhhcCCHHHHHHHHhcC---------------
Q 015988 114 KNKIKIVEAGALEPIISFLQSP-DLNLQEYAAAALLTLSA-SSVNKPFISASGAIPLLVEILRYG--------------- 176 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~L~~lL~~~--------------- 176 (397)
..+. +-.|+-+|+.+ ...+....+.....|.. +...|..+.+-|+++.|...++..
T Consensus 544 PeqE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvseh 616 (2799)
T KOG1788|consen 544 PEQE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEH 616 (2799)
T ss_pred cHHH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHH
Confidence 1111 12355566654 23344445555555544 445778888888888887666430
Q ss_pred ------CHHHHHH--------------------------------HHHHHHhhcC-CchhHHHHHhCCChHHHHHHhhhc
Q 015988 177 ------SQQAKFD--------------------------------AVMALSNLST-HPDNLSIILGTNPIPSIVDLLIFC 217 (397)
Q Consensus 177 ------~~~~~~~--------------------------------a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~ 217 (397)
++..+.+ ...+|..|-. +.+|.+.+.++.++..++.++-++
T Consensus 617 ydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflind 696 (2799)
T KOG1788|consen 617 YDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIND 696 (2799)
T ss_pred hhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeech
Confidence 1111110 0112222222 233444444433333333333221
Q ss_pred ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC------------HHHHHHHHHHHHHHhccCchhhH
Q 015988 218 KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS------------LQAREHAVGALLMMCQSDRCKYR 285 (397)
Q Consensus 218 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~------------~~v~~~a~~~L~~L~~~~~~~~r 285 (397)
..+...++++..|...+..+. +..-+.++++.|+++- ........++++.+...+. ..|
T Consensus 697 ----ehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvng-saq 767 (2799)
T KOG1788|consen 697 ----EHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNG-SAQ 767 (2799)
T ss_pred ----HHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCc-hhe
Confidence 123344555555543332211 2345667888887631 2234456677777776653 567
Q ss_pred HHHHHcCChHHHHHHhhc
Q 015988 286 EPILREGVIPGLLELTIQ 303 (397)
Q Consensus 286 ~~i~~~g~v~~L~~ll~~ 303 (397)
..+.++|+...|...+..
T Consensus 768 rvFgeatGFslLlttLht 785 (2799)
T KOG1788|consen 768 RVFGEATGFSLLLTTLHT 785 (2799)
T ss_pred eehhccccHHHHHHHHHH
Confidence 788899998888876643
No 216
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=86.38 E-value=18 Score=38.07 Aligned_cols=188 Identities=13% Similarity=0.030 Sum_probs=102.3
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchh
Q 015988 118 KIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
.......++.+..+-....-.++......++-++.... ..+...-.-+.+..-+.+...+++..|+..+..++.....
T Consensus 474 ~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 474 STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc
Confidence 33344445555555444445556666666666654322 1222211111112223333467888888877777653221
Q ss_pred HHHHHhCCChHHHHHHhhhc-ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015988 198 LSIILGTNPIPSIVDLLIFC-KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMM 276 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 276 (397)
... ....++.++.....+ .-.......++..|..+.+.+-. ....++.+..+...+.+.||.+++..|.-+
T Consensus 552 ~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~------~~~Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 552 EWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT------CEDLLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred chh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH------HHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 111 112244444443332 11223334455555554443322 234567888888888899999999999998
Q ss_pred hccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 277 CQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 277 ~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
...-. ....+.-+.|.+..+..+.+..++..|.-+...+
T Consensus 624 ~~~L~----~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 624 LKLLD----ESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred Hhhcc----hHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 77542 2445555677777777777778888776655444
No 217
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.19 E-value=13 Score=31.20 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=69.0
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHH-HHh---HHHHHHhhcCCCh--hHHHHHHHHHHhh---h
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQL-AQA---VQPLVLMLRAPDS--DHESALLALLNLA---V 110 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l-~~~---v~~Lv~lL~~~~~--~~~~a~~~L~~L~---~ 110 (397)
-...+..+..+|++.++..|..++..+...+..++ .+.+ ..+ +..++..|+.++. +.+.++.+|..+. .
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34556678889999999999999999998887641 3444 333 8889999988332 5666666665554 4
Q ss_pred cChhhHHHHHH---cCChHHHHHhhCCCCHHHHHHHHHHHHHHhc
Q 015988 111 KDEKNKIKIVE---AGALEPIISFLQSPDLNLQEYAAAALLTLSA 152 (397)
Q Consensus 111 ~~~~~~~~i~~---~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~ 152 (397)
+.++....+.- .+.++.++.+++. ......++.+|..+-.
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 45554444433 2345555555554 3445555566655543
No 218
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.00 E-value=40 Score=34.81 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-CCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHh
Q 015988 54 DDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-PDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISF 131 (397)
Q Consensus 54 ~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l 131 (397)
.+++.|..|...|.++.--+ -.+..+..|.|+..+.. ++. ++..|+-.|+.++..... +++. -...|.+-
T Consensus 908 sd~~lq~aA~l~L~klMClS---~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----~~de-~t~yLyrr 979 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLS---FEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----TADE-HTHYLYRR 979 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh----hhHH-HHHHHHHH
Confidence 47888988888887776432 12223348889888874 443 577888777776653221 2221 24567778
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 015988 132 LQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 132 L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~ 194 (397)
|...+.+++..++-++.+|-.....| -.|-++.+...|.+++.++..-|-..+..++..
T Consensus 980 L~De~~~V~rtclmti~fLilagq~K----VKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 980 LGDEDADVRRTCLMTIHFLILAGQLK----VKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred hcchhhHHHHHHHHHHHHHHHcccee----eccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 88888999999999999987644332 357788889999999988888887777777764
No 219
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.81 E-value=12 Score=36.56 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=78.8
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH-------------HHHHHH-hHHHHHHhhcC-CChhHHHHHHH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRC-------------RRQLAQ-AVQPLVLMLRA-PDSDHESALLA 104 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~-------------~~~l~~-~v~~Lv~lL~~-~~~~~~~a~~~ 104 (397)
....+..++++|.+ +++...++..+.-+..+.++. |..+.. .+|.|++..+. .+..+..-+.+
T Consensus 269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~A 346 (415)
T PF12460_consen 269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Confidence 34556777887755 677888888888888763232 333333 38999988887 43346777788
Q ss_pred HHHhhhcChhhHHHHHH-cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC
Q 015988 105 LLNLAVKDEKNKIKIVE-AGALEPIISFLQSPDLNLQEYAAAALLTLSASS 154 (397)
Q Consensus 105 L~~L~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~ 154 (397)
|.++..+-|.. ...-+ ...+|.|++-|..++.+++..++.+|..+..+.
T Consensus 347 Ls~ll~~vP~~-vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 347 LSHLLKNVPKS-VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHhhCCHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88888755522 22222 457888999999999999999999999988654
No 220
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=85.79 E-value=14 Score=33.64 Aligned_cols=152 Identities=19% Similarity=0.211 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHh----HHHHHHhhcC-----CChhHHHHHHHHHHhhhcChhhHHHHHHc-C-Ch
Q 015988 57 DLKLEAAREIRRLTKTSQRCRRQLAQA----VQPLVLMLRA-----PDSDHESALLALLNLAVKDEKNKIKIVEA-G-AL 125 (397)
Q Consensus 57 ~~~~~a~~~L~~l~~~~~~~~~~l~~~----v~~Lv~lL~~-----~~~~~~~a~~~L~~L~~~~~~~~~~i~~~-g-~i 125 (397)
+.+..++..++-++.+. ..-..+... ...+...+.. +...+..+++.+.|+.. ++..+..+.+. + .+
T Consensus 78 ~~~fP~lDLlRl~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHP-PASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS-HPPGRQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCCCH-CHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT-SCCCHHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHhCc-cHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC-CCccHHHHHhcccchH
Confidence 44555566665555543 222233221 2333333332 22367889999999988 67788887764 3 45
Q ss_pred HHHHHhhCCC----CHHHHHHHHHHHHHHhcCCC-Cc-hhhhhcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhcCCchh
Q 015988 126 EPIISFLQSP----DLNLQEYAAAALLTLSASSV-NK-PFISASGAIPLLVEILRY--GSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 126 ~~L~~lL~~~----~~~~~~~a~~~L~nLs~~~~-~~-~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
...+..+... +..++..++.++.|++..-. .+ ..=.....+..+++.+.. .++++.+..+.+|.+|...+..
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 4444444443 67889999999999985221 11 000112245555554332 6899999999999999987766
Q ss_pred HHHHHh-CCChHHH
Q 015988 198 LSIILG-TNPIPSI 210 (397)
Q Consensus 198 ~~~i~~-~g~i~~L 210 (397)
...... .|+-..+
T Consensus 236 ~~~~~~~l~~~~~~ 249 (268)
T PF08324_consen 236 AKQLAKSLDVKSVL 249 (268)
T ss_dssp HHHHCCCCTHHHHH
T ss_pred HHHHHHHcChHHHH
Confidence 666655 3433333
No 221
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.36 E-value=8.6 Score=35.44 Aligned_cols=139 Identities=19% Similarity=0.211 Sum_probs=90.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchh
Q 015988 165 AIPLLVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIV 243 (397)
Q Consensus 165 ~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~ 243 (397)
++...+..|.+.+++.+..++..|+.|+.. ++....... .+|-.+++-+++. ++.+...|+.++..+...-.+...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888999999999999999874 333222222 3455666666653 467778888888877443332221
Q ss_pred hhhccCcHHHHHHH-Hhc---CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 244 LTSEEGGVLAVVEV-LEN---GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 244 ~~~~~g~i~~Lv~l-L~~---~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
+ -...++.. +.. ++.-+++.|-.+|..+..+-.+ ..+++.|+..+.+.++.++..+..+..++
T Consensus 166 ---~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 ---Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred ---H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 1 22333333 332 3456889999999998876421 23578888889999999998887665444
No 222
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.77 E-value=4.8 Score=32.45 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=58.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCC--HHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGT--PKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~--~~~~~~A~~~L~~l~~ 321 (397)
++..|..-|.++++.++..|+.+|..+..+.+......+.+.+.+..|++++.... +.+++++..++..-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 56778888889999999999999999988865677788888889999999887733 3489999888876644
No 223
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.60 E-value=9.1 Score=40.40 Aligned_cols=145 Identities=16% Similarity=0.136 Sum_probs=100.5
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH---hHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ---AVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~---~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~ 116 (397)
...+|.+++.+.+.+...+..=+.+|.+...+-|. ...+.+ ..|.|++.|+-+|. ++..+..++.-+....+...
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 35678888888867777777788888888876543 222222 27888888887665 56788888877766554432
Q ss_pred HHHHHcCChHHHHHhhCCCC---HHHHHHHHHHHHHHhcCCC-CchhhhhcCCHHHHHHHHhcCCHHHHHHHHHH
Q 015988 117 IKIVEAGALEPIISFLQSPD---LNLQEYAAAALLTLSASSV-NKPFISASGAIPLLVEILRYGSQQAKFDAVMA 187 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~---~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~a 187 (397)
..=+ .-.+|.++.+=++.+ ..+|+.|+..|..|...-+ ..-....+.++..|...|.++..-+|..|..+
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2221 234677776666554 5689999999999987333 33333467789999999988888888888866
No 224
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=84.03 E-value=23 Score=33.53 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=110.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcC-Cc-hhHHHHHh--CCChHHHHHHhhhcc---cC--------hHHHHHHHHH
Q 015988 166 IPLLVEILRYGSQQAKFDAVMALSNLST-HP-DNLSIILG--TNPIPSIVDLLIFCK---KS--------SKTAEKCTSL 230 (397)
Q Consensus 166 i~~L~~lL~~~~~~~~~~a~~aL~nLs~-~~-~~~~~i~~--~g~i~~Lv~ll~~~~---~~--------~~~~~~a~~~ 230 (397)
+..+.+.|.+....+...++..|..+.. +. .....+.+ .=-.+.+.+++.... +. ..++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888899999999988 54 44555554 223445666653211 11 1556666666
Q ss_pred HHHhc--CCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHH-HhccCc--hhhHHHHHHcCChHHHHHHhhcCC
Q 015988 231 IESLV--GFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLM-MCQSDR--CKYREPILREGVIPGLLELTIQGT 305 (397)
Q Consensus 231 L~nL~--~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~-L~~~~~--~~~r~~i~~~g~v~~L~~ll~~~~ 305 (397)
+..+. .++..+..++.+.+.+..+...|..+++++....+.+|.. +..... ...+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 55553 3555777888677778889999988889999999999985 433321 245566667778999999887777
Q ss_pred H----HHHHHHHHHHHHhhcCC
Q 015988 306 P----KSQTKARTLLQLLRDSP 323 (397)
Q Consensus 306 ~----~~~~~A~~~L~~l~~~~ 323 (397)
+ .+.+.+-..|..++-++
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 7 88888888777766444
No 225
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=83.80 E-value=46 Score=32.68 Aligned_cols=170 Identities=18% Similarity=0.117 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhhh-cChhhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc
Q 015988 98 HESALLALLNLAV-KDEKNKIKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY 175 (397)
Q Consensus 98 ~~~a~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~ 175 (397)
+..|+.-|..+.. ++-..+...+. ..+..+++.|+. .++..+..|+++|..+..+...+-.=...-++..+++.-.+
T Consensus 304 ~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d 382 (516)
T KOG2956|consen 304 RKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD 382 (516)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC
Confidence 5667765555544 32223332222 124567778876 67788999999999998654322111123356666666666
Q ss_pred CCHHHHHHHHH-HHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc--cchhhhhccCcHH
Q 015988 176 GSQQAKFDAVM-ALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE--GRIVLTSEEGGVL 252 (397)
Q Consensus 176 ~~~~~~~~a~~-aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~~~~g~i~ 252 (397)
...++...|.. ++.-++.....+ .|.-+..++.+. +.+....++..+..++..-. .-..++ ....|
T Consensus 383 s~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP 451 (516)
T KOG2956|consen 383 SQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTA--DEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAP 451 (516)
T ss_pred CchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhh
Confidence 66666555554 455555542211 122333334332 22333444545554433221 111122 34667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 253 AVVEVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 253 ~Lv~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
.+++-..+.+..+|..++.+|..+...
T Consensus 452 ~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 452 CVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 777778888899999999999888654
No 226
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.80 E-value=31 Score=30.73 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=91.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHH
Q 015988 50 LIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPI 128 (397)
Q Consensus 50 lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L 128 (397)
.-+..++..+...+..|..++.++. ......+..|..+.+.+.. .+.-+.+.+..+...++... +.+..+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~---~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~ 79 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN---VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPL 79 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc---cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHH
Confidence 3345688999999999999998751 1122225556666655333 23345566666655433222 344444
Q ss_pred HHhh--C------C--CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCchh
Q 015988 129 ISFL--Q------S--PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEIL-RYGSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 129 ~~lL--~------~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
+..+ + + ...+.....+..+..++...++ .....++.+..+| ++.++.++..++.+|..|+.
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~---- 151 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE---- 151 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----
Confidence 4441 1 1 1223334444566666655444 3455788888888 77888889999999999882
Q ss_pred HHHHHh-CCChHHHHHHhhhcccChHHHHHHHHHHHH
Q 015988 198 LSIILG-TNPIPSIVDLLIFCKKSSKTAEKCTSLIES 233 (397)
Q Consensus 198 ~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n 233 (397)
..+++ ......+..-+..+ .++.+.+..+..+..
T Consensus 152 -~~vvd~~s~w~vl~~~l~~~-~rp~v~~~l~~l~~l 186 (234)
T PF12530_consen 152 -AEVVDFYSAWKVLQKKLSLD-YRPLVLKSLCSLFAL 186 (234)
T ss_pred -HhhccHHHHHHHHHHhcCCc-cchHHHHHHHHHHHH
Confidence 22222 22334444444332 344554544444443
No 227
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.79 E-value=30 Score=30.51 Aligned_cols=142 Identities=13% Similarity=0.135 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhhChHHHHHHHHh-HHH-HHHhh---cC---CChhHHHHHHHHHHhhhcChhhHH-HHHHcCChHHHHHh
Q 015988 61 EAAREIRRLTKTSQRCRRQLAQA-VQP-LVLML---RA---PDSDHESALLALLNLAVKDEKNKI-KIVEAGALEPIISF 131 (397)
Q Consensus 61 ~a~~~L~~l~~~~~~~~~~l~~~-v~~-Lv~lL---~~---~~~~~~~a~~~L~~L~~~~~~~~~-~i~~~g~i~~L~~l 131 (397)
.|+..|+-++++ |+.+..+.++ +|. +-.+| ++ .+..+..++..+..|.+.+..... .+.....+|..+++
T Consensus 119 naL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 355555555655 5888888886 442 22333 33 233688899999999985554433 44456889999999
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCCCCchhhhh--------cCCHHHHHHH-HhcCCHHHHHHHHHHHHhhcCCchhHHHHH
Q 015988 132 LQSPDLNLQEYAAAALLTLSASSVNKPFISA--------SGAIPLLVEI-LRYGSQQAKFDAVMALSNLSTHPDNLSIIL 202 (397)
Q Consensus 132 L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~--------~g~i~~L~~l-L~~~~~~~~~~a~~aL~nLs~~~~~~~~i~ 202 (397)
+..+++-.+..|+-++..+-.+|..-..+.+ .-++..++.. ...+.....++++++-..|+.+++.+..+.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~ 277 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLS 277 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHh
Confidence 9999888888888888888777765443332 1223333322 234667778889999888998888776665
Q ss_pred h
Q 015988 203 G 203 (397)
Q Consensus 203 ~ 203 (397)
.
T Consensus 278 ~ 278 (315)
T COG5209 278 S 278 (315)
T ss_pred c
Confidence 4
No 228
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.57 E-value=13 Score=38.40 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=61.0
Q ss_pred CChHHHHHhhC----CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCc
Q 015988 123 GALEPIISFLQ----SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG---SQQAKFDAVMALSNLSTHP 195 (397)
Q Consensus 123 g~i~~L~~lL~----~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~~~~a~~aL~nLs~~~ 195 (397)
..++.|...+. .++.+-+..++.+|.|+.. ...++.|...+... +..+|..|+++|+.++...
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 45666666655 4466777888899999853 34567777766655 5788899999999885542
Q ss_pred hhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHH
Q 015988 196 DNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIES 233 (397)
Q Consensus 196 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~n 233 (397)
.. .+.+.+..+..+..++..++..|..+|..
T Consensus 556 ~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 556 PE-------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 21 23456777777766677787777777663
No 229
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.56 E-value=12 Score=31.38 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=75.2
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcC--ChHHHHHHhhcC-CHHHHHHHHHHHHHh----hc
Q 015988 249 GGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREG--VIPGLLELTIQG-TPKSQTKARTLLQLL----RD 321 (397)
Q Consensus 249 g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g--~v~~L~~ll~~~-~~~~~~~A~~~L~~l----~~ 321 (397)
..+..+..+|.++++..+-.++..+..++..+ ..+.+.+.+ .+..|++++... .+.+.+.++.+|..+ .+
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~---~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQC---SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 46678888999988888989999999988764 134554533 688888888774 457788888877766 34
Q ss_pred CCCCCcccCcCchHHHHHHhhccCccchhhHHHHHHHHHHHHHhH
Q 015988 322 SPYPRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVSM 366 (397)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~~~~ 366 (397)
.+.....+....+++++..+..-.+.....+.+...|+.+....+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 454322333444666665553211222233788888888877543
No 230
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.33 E-value=46 Score=34.39 Aligned_cols=169 Identities=17% Similarity=0.139 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCC----CCHHHHHHHHHHHHHHhc----CC-
Q 015988 84 VQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQS----PDLNLQEYAAAALLTLSA----SS- 154 (397)
Q Consensus 84 v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~nLs~----~~- 154 (397)
+..+.+++...+.....|...|..+...-..-- ...+..+..+++. .++.++..|+-++..+.. ..
T Consensus 397 v~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~ 471 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSD 471 (618)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccc
Confidence 566666666633324445555555544220111 1224445555553 345566666666666543 21
Q ss_pred -----CCchhhhhcCCHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhc-ccChHHH
Q 015988 155 -----VNKPFISASGAIPLLVEILR----YGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFC-KKSSKTA 224 (397)
Q Consensus 155 -----~~~~~i~~~g~i~~L~~lL~----~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~ 224 (397)
..+........++.+...|. .++.+.+.-++.+|.|+.. ...++.|..++... .....++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R 541 (618)
T PF01347_consen 472 SAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIR 541 (618)
T ss_dssp ---------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHH
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHH
Confidence 11122223445666666655 3567788889999999754 23466677766664 2335667
Q ss_pred HHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 015988 225 EKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN--GSLQAREHAVGALLM 275 (397)
Q Consensus 225 ~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~ 275 (397)
..|+.+|..++... ...+.+.|+.++.. .+.++|-.|+.+|..
T Consensus 542 ~~Ai~Alr~~~~~~--------~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 542 VAAIQALRRLAKHC--------PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHTTTTGGGT---------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC--------cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 77787777552221 12345677788765 347788777766655
No 231
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=83.14 E-value=65 Score=33.90 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=91.1
Q ss_pred HHHhhcC-CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHH--HHHHHHhcCC-
Q 015988 187 ALSNLST-HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVL--AVVEVLENGS- 262 (397)
Q Consensus 187 aL~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~--~Lv~lL~~~~- 262 (397)
+|++++. .+++++.+.+.|++..+.+.++.- ....+...+++.+.|++...+.+...... ..+. .+-.++..-+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~-~~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELLMIF-EFIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHhhcch
Confidence 7888887 488999999999999999999876 45678999999999998877655443311 1222 3333444333
Q ss_pred HHHHHHHHHHHHHHhccCch--------hhHHHHHHc--------------CChHH-HHHHhh-cCCHHHHHHHHHHHHH
Q 015988 263 LQAREHAVGALLMMCQSDRC--------KYREPILRE--------------GVIPG-LLELTI-QGTPKSQTKARTLLQL 318 (397)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~--------~~r~~i~~~--------------g~v~~-L~~ll~-~~~~~~~~~A~~~L~~ 318 (397)
.+....++.+|..+....+. ...+.+++. ..... +.+++. ...+..+..|++.+.+
T Consensus 572 ~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~ 651 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKN 651 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHH
Confidence 47778888888888775310 111111110 11111 333332 2456777777777777
Q ss_pred hhcC-CC-CCcccCcCchHHH
Q 015988 319 LRDS-PY-PRSELQPDTLENI 337 (397)
Q Consensus 319 l~~~-~~-~~~~~~~~~~~~l 337 (397)
+... +. ++.+...++++-+
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~ 672 (699)
T KOG3665|consen 652 VLEQNKEYCKLVRESNGFELI 672 (699)
T ss_pred HHHcChhhhhhhHhccchhhh
Confidence 7543 33 4445555555543
No 232
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.09 E-value=72 Score=34.32 Aligned_cols=261 Identities=15% Similarity=0.133 Sum_probs=136.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhc-CCCh-hHHHHHHHHHHhhhcChhhHHHHHH--cCCh
Q 015988 50 LIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLR-APDS-DHESALLALLNLAVKDEKNKIKIVE--AGAL 125 (397)
Q Consensus 50 lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~-~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~--~g~i 125 (397)
.+++.---.|..|++.+..++..+=.....+.+++....+.|. +++. ++..|+-+|..+.++.+.....+-. .+.+
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m 549 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM 549 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence 3445555678889999999996543344445555666666666 4443 7889999999998866555443432 2344
Q ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHHhcC-CCCchhhhhcCCHHHHHHHHhc------CCHHHHHHHHHHHHhhcC---C
Q 015988 126 EPIISFLQSP-DLNLQEYAAAALLTLSAS-SVNKPFISASGAIPLLVEILRY------GSQQAKFDAVMALSNLST---H 194 (397)
Q Consensus 126 ~~L~~lL~~~-~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~a~~aL~nLs~---~ 194 (397)
+.|+.+.+.- +..+....=..++..+.. .+....+. ........+++.. ++.+-...|.++|..+++ .
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s 628 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLS 628 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 5555555432 222222222222222210 01111111 1122333344432 123444556666666543 2
Q ss_pred chhHHHHHh--CC-ChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHHHHHhcCCHHHHHHHH
Q 015988 195 PDNLSIILG--TN-PIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVVEVLENGSLQAREHAV 270 (397)
Q Consensus 195 ~~~~~~i~~--~g-~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~ 270 (397)
-++...+.. +. +++.+-.+++++ -.+.-++++.++.++..... --..|. |..+.+.+.+....-+--....
T Consensus 629 ~e~~p~vl~~le~~~l~vi~~iL~~~--i~dfyeE~~ei~~~~t~~~~~Isp~mW---~ll~li~e~~~~~~~dyf~d~~ 703 (1010)
T KOG1991|consen 629 LENHPEVLKQLEPIVLPVIGFILKND--ITDFYEELLEIVSSLTFLSKEISPIMW---GLLELILEVFQDDGIDYFTDMM 703 (1010)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhhhhhcccCHHHH---HHHHHHHHHHhhhhHHHHHHHH
Confidence 334433332 33 334444445543 35677888888888755443 333344 6677777777766666667778
Q ss_pred HHHHHHhccCchhhHHHHHHcC-ChH----HHHHHhhc--CCHHHHHHHHHHHHHhh
Q 015988 271 GALLMMCQSDRCKYREPILREG-VIP----GLLELTIQ--GTPKSQTKARTLLQLLR 320 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~~i~~~g-~v~----~L~~ll~~--~~~~~~~~A~~~L~~l~ 320 (397)
-+|.|....+. ..+.+.+ -.. .+.+.+.+ ....-.+.|..++..+.
T Consensus 704 ~~l~N~vt~g~----~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~ii 756 (1010)
T KOG1991|consen 704 PALHNYVTYGT----PSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVII 756 (1010)
T ss_pred HHHhhheeeCc----hhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 88888876542 2333322 222 22233333 33444555677666553
No 233
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=82.92 E-value=37 Score=32.63 Aligned_cols=163 Identities=14% Similarity=0.065 Sum_probs=82.1
Q ss_pred HHHHhcCCCCchhhhhcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCchh-HHHHHhCCChHHHHH-HhhhcccChHH
Q 015988 147 LLTLSASSVNKPFISASGAIPLLVEILRYG-SQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVD-LLIFCKKSSKT 223 (397)
Q Consensus 147 L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~aL~nLs~~~~~-~~~i~~~g~i~~Lv~-ll~~~~~~~~~ 223 (397)
+-||+..++.. .+.+..-.+.+-+-+... ....+..|+..|..|+...+. ...++- +.+..++. .-.++..+.+-
T Consensus 194 ~Pnl~~~e~D~-ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 194 FPNLCLREEDE-ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp HHHHS--HHHH-HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHH
T ss_pred cCccCCCHHHH-HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHH
Confidence 45666544332 223334444444444322 345677888899999864221 111111 12222222 11223334466
Q ss_pred HHHHHHHHHHhcCCcccch----hhhhccCcHH----HHHHHHh---cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcC
Q 015988 224 AEKCTSLIESLVGFDEGRI----VLTSEEGGVL----AVVEVLE---NGSLQAREHAVGALLMMCQSDRCKYREPILREG 292 (397)
Q Consensus 224 ~~~a~~~L~nL~~~~~~~~----~~~~~~g~i~----~Lv~lL~---~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g 292 (397)
...|+.++..|+....... ..-.--.... .++.-|. +..|-++..|++.+...-..-+ ++.+ .+
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l--~~ 346 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQL--LQ 346 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHH--HH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHH--HH
Confidence 7888888888876554322 1100001111 2222233 2447788888888887765431 2233 34
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHH
Q 015988 293 VIPGLLELTIQGTPKSQTKARTLL 316 (397)
Q Consensus 293 ~v~~L~~ll~~~~~~~~~~A~~~L 316 (397)
++|.++..|.+.+..+.-+|+.++
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhhC
Confidence 899999999999999999998764
No 234
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.03 E-value=24 Score=35.60 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=74.0
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcC-CChhHHHHHHHHHHhhh--cChh
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRA-PDSDHESALLALLNLAV--KDEK 114 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~-~~~~~~~a~~~L~~L~~--~~~~ 114 (397)
.-.|.+.-+++.+.+.+..+|..++..|..+...-.+.-+.+.++ +..|.+-+-+ ...++..|+.+|..+-. .+++
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 445666667777788899999999999998886544555566665 5555555444 44579999999988764 2333
Q ss_pred hHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhh
Q 015988 115 NKIKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFIS 161 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~ 161 (397)
|+. ...|..++++ ++.+++.. ++.|+..+......+.
T Consensus 168 n~~-------~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p~Il 205 (885)
T COG5218 168 NRI-------VNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYPCIL 205 (885)
T ss_pred HHH-------HHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcchhHH
Confidence 322 2356666664 45567764 4677776665555444
No 235
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.72 E-value=4 Score=33.22 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=58.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCC-HH---HHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGT-PK---SQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~-~~---~~~~A~~~L~~l~~ 321 (397)
++..|..-|.++++.++..|+.+|..+..+.+...+..+.+...+..|.+++.... .. |++++..++..-..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 56778888889999999999999999998876677888887788999999887633 33 89999888876643
No 236
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=81.68 E-value=45 Score=31.00 Aligned_cols=196 Identities=12% Similarity=0.115 Sum_probs=132.5
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH---h-HHHHHHhhcC-CChhHHHHH---HHHHHhhhc
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ---A-VQPLVLMLRA-PDSDHESAL---LALLNLAVK 111 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~---~-v~~Lv~lL~~-~~~~~~~a~---~~L~~L~~~ 111 (397)
.+|.+..++..+...+.+.+..++....++.+.....|....+ + ...+-.+++. .+. .+.|+ ..|+...+
T Consensus 77 ~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~-~~iaL~cg~mlrEcir- 154 (342)
T KOG1566|consen 77 NADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENT-PEIALTCGNMLRECIR- 154 (342)
T ss_pred hCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccc-hHHHHHHHHHHHHHHh-
Confidence 5577788888888888889999999888888765444443333 1 3444444444 221 33333 33455444
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhc-CCCCchhhhhc---CC-HHHHHHHHhcCCHHHHHHHHH
Q 015988 112 DEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSA-SSVNKPFISAS---GA-IPLLVEILRYGSQQAKFDAVM 186 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~---g~-i~~L~~lL~~~~~~~~~~a~~ 186 (397)
.+.....+.+...........+.++-++...|..+...+.. +......+... .. .+.--.++++++.-++.++..
T Consensus 155 he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~k 234 (342)
T KOG1566|consen 155 HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLK 234 (342)
T ss_pred hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHH
Confidence 56677778888888889999999988888888888877653 22222222221 12 333556788999999999999
Q ss_pred HHHhhcCCchhHHHHHh----CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc
Q 015988 187 ALSNLSTHPDNLSIILG----TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE 239 (397)
Q Consensus 187 aL~nLs~~~~~~~~i~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~ 239 (397)
.|..+-.+..|-..+.. ..-+..++.+|+... ..++-+|..+.+-...++.
T Consensus 235 llg~llldr~N~~~M~kYiss~enLKlmM~llrdks--kniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 235 LLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS--KNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred hHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc--ccchHHHHHHHHHHhcCCC
Confidence 99999888777665554 345778889998853 5678889888886655443
No 237
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.37 E-value=55 Score=32.16 Aligned_cols=129 Identities=16% Similarity=0.070 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHHhhhChHH-HHHHHHhHHHHHHhhcC-CCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHh
Q 015988 55 DPDLKLEAAREIRRLTKTSQRC-RRQLAQAVQPLVLMLRA-PDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISF 131 (397)
Q Consensus 55 ~~~~~~~a~~~L~~l~~~~~~~-~~~l~~~v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l 131 (397)
++..+..|++.|..++.+.+.. ......+|..+++.-++ .+. ....+-.++.-++...+..+. ..+..+
T Consensus 343 ~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I--------~~i~~~ 414 (516)
T KOG2956|consen 343 DEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI--------VNISPL 414 (516)
T ss_pred hhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH--------HHHhhH
Confidence 4445555666666666543211 11111113333333333 222 222333345555554443322 223334
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCCCCchhhh--hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 015988 132 LQSPDLNLQEYAAAALLTLSASSVNKPFIS--ASGAIPLLVEILRYGSQQAKFDAVMALSNLS 192 (397)
Q Consensus 132 L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs 192 (397)
+...+......++..+..+...= .++.+. -....|.+++...+.+..+|+.|.-+|..+.
T Consensus 415 Ilt~D~~~~~~~iKm~Tkl~e~l-~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 415 ILTADEPRAVAVIKMLTKLFERL-SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HhcCcchHHHHHHHHHHHHHhhc-CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 44444444444444444444311 122222 3567888888888888899998888877653
No 238
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=79.92 E-value=45 Score=34.36 Aligned_cols=187 Identities=11% Similarity=0.094 Sum_probs=120.1
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHH
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLS 199 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~ 199 (397)
+..+.+|.|++++...+..+|..-+.=+-+.. +..-..+.+...++.+..-+.+.++.++++++.++..|+..-..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 55678999999999999888864443332222 234455667888999999999999999999999988887642211
Q ss_pred HHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 200 IILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 200 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
-.....+..+.++-- +++..++....-+|..++.+..... ++.-.+..+..-++++-...|..++.+++..+..
T Consensus 404 -~Ln~Ellr~~ar~q~--d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQP--DEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred -hhcHHHHHHHHhhCc--cccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 112222333333332 2344555666666666655432221 1222344555556666566788888888887765
Q ss_pred CchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 280 DRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 280 ~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
.+ . .=+...++|.++.+.-+.+..++..|..++..+
T Consensus 478 ~~--~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 478 FD--Q--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred cc--h--hhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 42 1 123356889999988888889999998776655
No 239
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=79.57 E-value=92 Score=33.31 Aligned_cols=189 Identities=13% Similarity=0.122 Sum_probs=108.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh--CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-cchhh
Q 015988 168 LLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILG--TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-GRIVL 244 (397)
Q Consensus 168 ~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~ 244 (397)
.+..-+.+.++.-+..|+.-+........ ..+.. .|.+-.+.+....+ .+..+...++.+|..++..-. .....
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kD-aN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKD-ANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccC-cchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 33334456677788888876666555433 11211 34444455555444 345667777777777754322 22222
Q ss_pred hhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC
Q 015988 245 TSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 245 ~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
..+..+.+++.+...-+.+++.++.++..++.... -....+.+...+.+++|.++......+..+-....
T Consensus 334 --~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 334 --AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred --HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 23677889999988888888888888887776431 12346677888999999999887666655533322
Q ss_pred CCcccCcCchHHHHHHhhccCccchhh--HHHHHHHHHHHHHhHHHhH
Q 015988 325 PRSELQPDTLENIVCNIISQIDGDEQS--GKAKKMLAEMVQVSMEQSL 370 (397)
Q Consensus 325 ~~~~~~~~~~~~ll~~l~~~~~~~~~~--~~A~~~L~~l~~~~~~~~~ 370 (397)
. .....+.+..++..+..+.+..... ..|.+.+..+.+..-+.-+
T Consensus 404 ~-~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 404 P-KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred C-cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1 2333344444444444444333333 4455566655555444333
No 240
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.55 E-value=54 Score=33.24 Aligned_cols=127 Identities=15% Similarity=0.045 Sum_probs=78.2
Q ss_pred HHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHH
Q 015988 103 LALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKF 182 (397)
Q Consensus 103 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 182 (397)
..+.....++|+.-..+ .|.+..+++-+.+.+..++...+..|.-++..-.--......|.+..|..-+.+-.+.++.
T Consensus 73 ~f~~Y~~~~dpeg~~~V--~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~ 150 (885)
T COG5218 73 RFFEYDMPDDPEGEELV--AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRR 150 (885)
T ss_pred HHHHhcCCCChhhhHHH--HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 33443444456553332 4567778888889999999999999988874322222344567777777777777889999
Q ss_pred HHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc
Q 015988 183 DAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE 239 (397)
Q Consensus 183 ~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~ 239 (397)
.|..+|..+-....|-+.. ....|+.+++.+ |+..++..| |.|+..++.
T Consensus 151 eAv~~L~~~Qe~~~neen~----~~n~l~~~vqnD-PS~EVRr~a---llni~vdns 199 (885)
T COG5218 151 EAVKVLCYYQEMELNEENR----IVNLLKDIVQND-PSDEVRRLA---LLNISVDNS 199 (885)
T ss_pred HHHHHHHHHHhccCChHHH----HHHHHHHHHhcC-cHHHHHHHH---HHHeeeCCC
Confidence 9999998875432222111 223566666665 344444433 345544443
No 241
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.11 E-value=85 Score=32.64 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=79.6
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHH
Q 015988 122 AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSII 201 (397)
Q Consensus 122 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i 201 (397)
.|.+..+++-..+.+..++...+..|..+.....-...-+-.+....+..-+.+..+.+|.+|..+|..+=.++.+-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 35566677777788889999999999888763333334444566777777777888999999999999987543211
Q ss_pred HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhh
Q 015988 202 LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLT 245 (397)
Q Consensus 202 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 245 (397)
+..+...+..+++.+ |++.++..|+ .|++.++.....++
T Consensus 161 -e~~v~n~l~~liqnD-pS~EVRRaaL---snI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQND-PSDEVRRAAL---SNISVDNSTLPCIV 199 (892)
T ss_pred -cccHHHHHHHHHhcC-CcHHHHHHHH---HhhccCcccchhHH
Confidence 245667788888886 4667766654 45555555444443
No 242
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.92 E-value=1.1e+02 Score=33.10 Aligned_cols=277 Identities=14% Similarity=0.105 Sum_probs=149.3
Q ss_pred ccchhhhHHHHHHHhc------CC--CHHHHHHHHHHHHHHhhh---ChHHHHHHHHh-HHHHHHhhcCCCh-hHHHHHH
Q 015988 37 SSSASSAVHRALHLIQ------SD--DPDLKLEAAREIRRLTKT---SQRCRRQLAQA-VQPLVLMLRAPDS-DHESALL 103 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~------s~--~~~~~~~a~~~L~~l~~~---~~~~~~~l~~~-v~~Lv~lL~~~~~-~~~~a~~ 103 (397)
...=.+.++.++..|. .. ++.-..-|++.++.+++. +...+..+... ++.+...++++-- .+-.|+|
T Consensus 405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW 484 (1010)
T ss_pred hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence 3344566777777665 22 344455578887777742 33344445444 5666666666333 6888999
Q ss_pred HHHHhhhcChhhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCC-Cchhhhh--cCCHHHHHHHHhcCCHH
Q 015988 104 ALLNLAVKDEKNKIKIVEAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSV-NKPFISA--SGAIPLLVEILRYGSQQ 179 (397)
Q Consensus 104 ~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~--~g~i~~L~~lL~~~~~~ 179 (397)
.+...+..+=.....+ ..+++.....|. +..-.++..|+-+|..+-.+.+ +..++.. ++.++.|+.+.+.-+.+
T Consensus 485 vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End 562 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND 562 (1010)
T ss_pred HHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence 9999984221111112 223445566666 5566788888888888876654 5555553 56777777777664444
Q ss_pred HHHHHHHH-HHhhcCC-chhHHHHHhCCChHHHHHHhhh----cccChHHHHHHHHHHHHhcC---Ccccchhhhhc-cC
Q 015988 180 AKFDAVMA-LSNLSTH-PDNLSIILGTNPIPSIVDLLIF----CKKSSKTAEKCTSLIESLVG---FDEGRIVLTSE-EG 249 (397)
Q Consensus 180 ~~~~a~~a-L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~nL~~---~~~~~~~~~~~-~g 249 (397)
.....+.. +...+.- ......+.. .......+++.. ...+..-...|.++|..+.. .-++...+..+ +.
T Consensus 563 ~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~ 641 (1010)
T KOG1991|consen 563 DLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEP 641 (1010)
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 44444432 2222221 112222222 123445555553 11122234556666654432 23333333321 22
Q ss_pred c-HHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 250 G-VLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 250 ~-i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
. .+.+-.+|++.-.++-+.++.++.+++...+ ++--.++ |..+.+.+.+......--....-+|.|.
T Consensus 642 ~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~-~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 642 IVLPVIGFILKNDITDFYEELLEIVSSLTFLSK-EISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNY 709 (1010)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhc-ccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 3 3444444555557788888888888877652 4555555 3566666666554444444444556655
No 243
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=77.92 E-value=53 Score=29.89 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=70.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc--CCHHHHHHHHHHHHhhcCCchhHHHHHhC
Q 015988 127 PIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY--GSQQAKFDAVMALSNLSTHPDNLSIILGT 204 (397)
Q Consensus 127 ~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~a~~aL~nLs~~~~~~~~i~~~ 204 (397)
.|=..|.++++..|..|+..|......-+ .......-+..|+..+-+ .+......++..+..|....... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp--~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-----~ 75 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLP--PDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-----P 75 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCC--HhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-----h
Confidence 34456778889999999888887654221 111222224555555432 35555544455555554321110 0
Q ss_pred CChHHHHHHhhh----cccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Q 015988 205 NPIPSIVDLLIF----CKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN-GSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 205 g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~ 278 (397)
+....+++-+.. ..-....+..+..+|..|.........-+ ..+.+..+++.++. .||..-..+...+..+..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 112222222211 11112345667777776644322111111 23456667776653 567766666666666644
No 244
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=77.76 E-value=20 Score=27.21 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=56.7
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 015988 247 EEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQL 318 (397)
Q Consensus 247 ~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~ 318 (397)
..+.+..|++.+..++....+.++..|..+...+ .+...+.+-|++.-|-++-...++..+...-.++..
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~--~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP--YAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc--HHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 4567788888888777778899999999999986 567778889999998888877888888777766653
No 245
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.10 E-value=14 Score=29.78 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=58.8
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCch--hHHHHHhCCChHHHHHHhhhc-ccChHHHHHHHHHHHHhcCCc
Q 015988 164 GAIPLLVEILRYGSQQAKFDAVMALSNLSTHPD--NLSIILGTNPIPSIVDLLIFC-KKSSKTAEKCTSLIESLVGFD 238 (397)
Q Consensus 164 g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~~a~~~L~nL~~~~ 238 (397)
.++..|-+-|.++++.++..|+..|-.+..+.. ....+.....+..|++++... ..+..+...++.++.+.+..-
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 457777788889999999999999999998643 556677767888899999764 345678899999988775543
No 246
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.37 E-value=1.5e+02 Score=33.87 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=110.8
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhhhC-hHHHHHHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHH
Q 015988 44 VHRALHLIQS-DDPDLKLEAAREIRRLTKTS-QRCRRQLAQAVQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVE 121 (397)
Q Consensus 44 l~~lv~lL~s-~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~ 121 (397)
+=++..+-++ ..+..+.-|+..+..++... .+.+..+.+.||.|.+.=-+|+.-...|...+.+.-..+...-..-+-
T Consensus 958 VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~ 1037 (1702)
T KOG0915|consen 958 VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL 1037 (1702)
T ss_pred HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 3344444432 35666666888888888754 334445555578777775567763444555555543323222111111
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh-cCCHHHHHHHHhcCCHHHHH---HHHHHHHhhcCC---
Q 015988 122 AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA-SGAIPLLVEILRYGSQQAKF---DAVMALSNLSTH--- 194 (397)
Q Consensus 122 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~---~a~~aL~nLs~~--- 194 (397)
.....-|+.-+.+..=.+|+.++.+|..|-...++-...-. +.....+++...+=...+|+ .++.+|..|+..
T Consensus 1038 neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1038 NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 23334444444555567999999999999875433221111 23444444444443344444 445556665431
Q ss_pred chh---HHHHHhCCChHHHHH--HhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHH
Q 015988 195 PDN---LSIILGTNPIPSIVD--LLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQA 265 (397)
Q Consensus 195 ~~~---~~~i~~~g~i~~Lv~--ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v 265 (397)
..+ .+++.+ .++|.|.+ .+ + .-..++.-++..+..|+.+......-. -...|+.|++.+..-++.+
T Consensus 1118 ~~~~~~~~~~l~-~iLPfLl~~gim-s--~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1118 VTNGAKGKEALD-IILPFLLDEGIM-S--KVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred cCCcccHHHHHH-HHHHHHhccCcc-c--chHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHH
Confidence 111 122222 23344332 12 1 124677888899988876554422211 2345666666665544443
No 247
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.97 E-value=17 Score=37.34 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=59.0
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC
Q 015988 248 EGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 248 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
.|.+.++++-..+++..||..++.+|.-+..... + +..-+-.+....|..-+.+..|.+|..|+.+|+.+.+.+.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-E-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-c-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 4677777777788899999999999999987542 2 3333445677788888888899999999999999986553
No 248
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=75.39 E-value=18 Score=28.06 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=53.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHh------hcCCHHHHHHHHHHHHHh
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELT------IQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll------~~~~~~~~~~A~~~L~~l 319 (397)
++..|..-|.++++.++..++.+|..+..+.++.....+.+...+..++++. ...+..+|+++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 5677777788889999999999999999988777777777766665555431 123679999998887654
No 249
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=75.02 E-value=1.3e+02 Score=32.77 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=93.9
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccch
Q 015988 163 SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRI 242 (397)
Q Consensus 163 ~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 242 (397)
.++++.|+..|++.+..++-.|+.-+..++.... ..+.+ .++..+++++.-.. +...-..++-+|+.|+...--..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e-~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAE-DDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCC-chhHHHHHHHHHHHHHhcCCcch
Confidence 3577778888888888999999998888887533 22222 34555666444332 22333578888888866543333
Q ss_pred hhhhccCcHHHHHHHHhc--------CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHH
Q 015988 243 VLTSEEGGVLAVVEVLEN--------GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKART 314 (397)
Q Consensus 243 ~~~~~~g~i~~Lv~lL~~--------~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~ 314 (397)
..+ ..+++.++.-|.- ....+|..|+.+++.+++...+..-+.+.+.=.-..|+..+.+....+|+.|..
T Consensus 416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 222 2345555544431 235689999999999988764332233333333344456667777888999988
Q ss_pred HHHHh
Q 015988 315 LLQLL 319 (397)
Q Consensus 315 ~L~~l 319 (397)
++.-.
T Consensus 494 AlqE~ 498 (1133)
T KOG1943|consen 494 ALQEN 498 (1133)
T ss_pred HHHHH
Confidence 76544
No 250
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.07 E-value=90 Score=35.38 Aligned_cols=108 Identities=11% Similarity=0.119 Sum_probs=67.7
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHH--HHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRR--QLAQAVQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~--~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
+++..++..|...-..+|.+|+++|..+...++.... .+..+| --++.++.-.+++.|+..++...-..++.-...
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V--h~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV--HGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH--HHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 4567788888888889999999999999987754331 121111 112233333468888888886655444443333
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCC
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVN 156 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~ 156 (397)
+ ..+.+-+......+|..+...++.++...++
T Consensus 894 Y-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 894 Y-----DQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred H-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 2 2234444455567888888888888764443
No 251
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=73.95 E-value=65 Score=28.70 Aligned_cols=175 Identities=17% Similarity=0.127 Sum_probs=95.8
Q ss_pred HHHHH-hhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh
Q 015988 126 EPIIS-FLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILG 203 (397)
Q Consensus 126 ~~L~~-lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~ 203 (397)
+.|+. .-+..+++.+...+.+|+.++.++ .+... ++..|..+...+..+.+.-+.+.+..+-...+-.-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34444 344568889999999999999876 33322 35555566666666665555555555543322110
Q ss_pred CCChHHHHHH--hh------hcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHH-hcCCHHHHHHHHHHHH
Q 015988 204 TNPIPSIVDL--LI------FCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVL-ENGSLQAREHAVGALL 274 (397)
Q Consensus 204 ~g~i~~Lv~l--l~------~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~~L~ 274 (397)
+.+..++.. ++ +..............+..+|...+++ -...++.+...| +..++.++..++.+|.
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 223333332 11 11111223334345666666655551 223678888888 6777889999999999
Q ss_pred HHhccCchhhHHHHHH-cCChHHHHHHh-hcCCHHHHHHHHHHHHHhhcC
Q 015988 275 MMCQSDRCKYREPILR-EGVIPGLLELT-IQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 275 ~L~~~~~~~~r~~i~~-~g~v~~L~~ll-~~~~~~~~~~A~~~L~~l~~~ 322 (397)
.+|... +++ ...-..+.+-+ .+..|.+.+..+..+..+...
T Consensus 148 ~Lc~~~-------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 148 PLCEAE-------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred HHHHHh-------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccc
Confidence 999542 121 11223333333 224455555555555555433
No 252
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=72.78 E-value=15 Score=29.18 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=51.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH-cCChHHHHHHhhc--------CCHHHHHHHHHHHHHhh
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR-EGVIPGLLELTIQ--------GTPKSQTKARTLLQLLR 320 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~~--------~~~~~~~~A~~~L~~l~ 320 (397)
++..|..-|...++.|+..++.+|..+|....+..+..+.+ .-.|..+..+-.. .+..||..|-.++..+-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 45677777778889999999999999999876666666665 3355555554431 22478888888887764
Q ss_pred c
Q 015988 321 D 321 (397)
Q Consensus 321 ~ 321 (397)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 3
No 253
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=72.09 E-value=1.1e+02 Score=30.41 Aligned_cols=276 Identities=16% Similarity=0.058 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCC-hhHHHHHHHHHHhhhc-----ChhhHHHHHHcC-----
Q 015988 55 DPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPD-SDHESALLALLNLAVK-----DEKNKIKIVEAG----- 123 (397)
Q Consensus 55 ~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~-----~~~~~~~i~~~g----- 123 (397)
...+|.+|+..|..+++.-.-.+..+.+....+..-+-..+ .++..+...+..+..+ .++..+.=...|
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 34689999999999987654444444443333333333322 2477777777666442 111111111111
Q ss_pred ----ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC----CC-ch---hhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015988 124 ----ALEPIISFLQSPDLNLQEYAAAALLTLSASS----VN-KP---FISASGAIPLLVEILRYGSQQAKFDAVMALSNL 191 (397)
Q Consensus 124 ----~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~----~~-~~---~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nL 191 (397)
..+.+ .-++.-+..+...+.++.++.... +| +. .+...|.- .+.+.-++..|.+++..+
T Consensus 348 ~l~~p~~~~--~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~Vy 418 (728)
T KOG4535|consen 348 MLNGPLPRA--LYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALGVY 418 (728)
T ss_pred HccCCChhh--hhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhceeE
Confidence 11111 112223446677777888876421 11 11 11111111 223344566666666666
Q ss_pred cCCchhHHHHHh-CCChHHHHHHhhhcccChHHHHHHHHHHHHhcC----Cccc-chhhhhccC-cHHHHHHHHh---cC
Q 015988 192 STHPDNLSIILG-TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG----FDEG-RIVLTSEEG-GVLAVVEVLE---NG 261 (397)
Q Consensus 192 s~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~----~~~~-~~~~~~~~g-~i~~Lv~lL~---~~ 261 (397)
.-++..+..... ..+...+...+.+. .-..++++.+.+.|++. ...+ +....+-.| .+..++..-. ..
T Consensus 419 VLHp~lr~d~~fv~~aa~~il~sl~d~--~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad 496 (728)
T KOG4535|consen 419 VLHPCLRQDVIFVADAANAILMSLEDK--SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASAD 496 (728)
T ss_pred EeccchhhhHHHHHHHHHHHHHHhhhH--hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 655555533322 33445555555443 23456788888888742 1222 111110011 1222322211 23
Q ss_pred CHHHHHHHHHHHHHHhccCch--hhHHHHHHcCChHHHHH-HhhcCCHHHHHHHHHHHHHhhcCCCC--CcccCcCchHH
Q 015988 262 SLQAREHAVGALLMMCQSDRC--KYREPILREGVIPGLLE-LTIQGTPKSQTKARTLLQLLRDSPYP--RSELQPDTLEN 336 (397)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~--~~r~~i~~~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~~~~~~~~ 336 (397)
+..|+.+++++|.|+...-.+ +.-......|.+..++. ....+...+|=+|+.++.|+-.++.. +..--.+.+..
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~ 576 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFN 576 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHH
Confidence 478999999999999764210 01111112232333332 23346678999999999999888752 22222344444
Q ss_pred HHHHh
Q 015988 337 IVCNI 341 (397)
Q Consensus 337 ll~~l 341 (397)
.+..|
T Consensus 577 ~L~~L 581 (728)
T KOG4535|consen 577 ALTSL 581 (728)
T ss_pred HHHHH
Confidence 44444
No 254
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=71.83 E-value=57 Score=27.14 Aligned_cols=145 Identities=16% Similarity=0.068 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccc
Q 015988 163 SGAIPLLVEILRYG-SQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGR 241 (397)
Q Consensus 163 ~g~i~~L~~lL~~~-~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~ 241 (397)
+..++.|+.+|+.+ +..+|.+++++|..|..-+..+.+....+. +.- -... ........ .+.+....+ ..
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~---~~~~-~~~~~~~~---~l~~~~~~~-~~ 79 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSK---SSEN-SNDESTDI---SLPMMGISP-SS 79 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Ccc---cccc-ccccchhh---HHhhccCCC-ch
Confidence 44577788888765 689999999999999886665544332111 100 0000 00111111 111111111 11
Q ss_pred hhhhhccCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 242 IVLTSEEGGVLAVVEVLENGS-LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 242 ~~~~~~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
.... -..++..|+.+|+.++ ..-...++.++.++....+..+. . .=..++|.++..++..++..++.-..-|..+
T Consensus 80 ee~y-~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv-~-~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 80 EEYY-PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCV-P-YLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCch-h-HHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1222 2346788888888665 23334566776666644321221 1 1145899999999988887777765544443
No 255
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.08 E-value=14 Score=27.66 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=52.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 015988 126 EPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 126 ~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~ 194 (397)
...+.-+.++.+.+|.+++..|..|..... ....-..+++..+...|+++++=+--+|+..|..|+..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 445566778888899999999999987655 22333467777888888889988999999999988874
No 256
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=71.06 E-value=12 Score=30.10 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=58.1
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCc
Q 015988 164 GAIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFD 238 (397)
Q Consensus 164 g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~ 238 (397)
.++..|-+-|.++++.++..|+..|-.+..+ ......+...++++.|..++........+...++.++..-+..-
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3566677778889999999999999999886 34557777788899999999886544448888888888765433
No 257
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=70.73 E-value=1.3e+02 Score=30.78 Aligned_cols=134 Identities=19% Similarity=0.134 Sum_probs=73.1
Q ss_pred ChHHHHHhhCCC----CHHHHHHHHHHHHHHhc----CCCCchhhhhcCCHHHHHHHHhc----CCHHHHHHHHHHHHhh
Q 015988 124 ALEPIISFLQSP----DLNLQEYAAAALLTLSA----SSVNKPFISASGAIPLLVEILRY----GSQQAKFDAVMALSNL 191 (397)
Q Consensus 124 ~i~~L~~lL~~~----~~~~~~~a~~~L~nLs~----~~~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~a~~aL~nL 191 (397)
.++.+..++.++ .+.++..+.-++..+.. +.+..........++.+...|.. ++.+.+.-.+.+|.|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 345566666643 44566666666666543 22221112223455666655532 3445556677777776
Q ss_pred cCCchhHHHHHhCCChHHHHHHhh-hcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc--CCHHHHHH
Q 015988 192 STHPDNLSIILGTNPIPSIVDLLI-FCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN--GSLQAREH 268 (397)
Q Consensus 192 s~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~ 268 (397)
... ..++.+..++. .......++..|+.+|..++.... ..+-+.|+.++.. .++++|..
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--------RKVQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHcCCCCChHHHHH
Confidence 542 23444555554 222345678899999987753221 1233566777664 34778877
Q ss_pred HHHHHHH
Q 015988 269 AVGALLM 275 (397)
Q Consensus 269 a~~~L~~ 275 (397)
|+.+|..
T Consensus 536 A~~~lm~ 542 (574)
T smart00638 536 AVLVLME 542 (574)
T ss_pred HHHHHHh
Confidence 7666655
No 258
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=70.65 E-value=67 Score=27.45 Aligned_cols=110 Identities=18% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh-----CCC---------------hHHHHHHhhhcccChHHHHH
Q 015988 167 PLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILG-----TNP---------------IPSIVDLLIFCKKSSKTAEK 226 (397)
Q Consensus 167 ~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-----~g~---------------i~~Lv~ll~~~~~~~~~~~~ 226 (397)
..+.-++.++++.+|..|+.+|..|-.....--...+ .+. =..|+..|+... +......
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q 121 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQ 121 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHH
Confidence 3444566788999999999999988665321111111 111 123445555542 3556778
Q ss_pred HHHHHHHhcCCcccchhhhhccCcHH----HHHHHHhcCCHHHHHHHHHHHHHHhccC
Q 015988 227 CTSLIESLVGFDEGRIVLTSEEGGVL----AVVEVLENGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 227 a~~~L~nL~~~~~~~~~~~~~~g~i~----~Lv~lL~~~~~~v~~~a~~~L~~L~~~~ 280 (397)
.+.+|..|.......+. ..|.++ .+..++.+.|++++..++.++..+....
T Consensus 122 ~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 88888888766554433 345544 4555667788999999999998887654
No 259
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=69.51 E-value=37 Score=28.31 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=76.8
Q ss_pred ChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHH
Q 015988 124 ALEPIISFLQSP-DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIIL 202 (397)
Q Consensus 124 ~i~~L~~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~ 202 (397)
.++.|+++|+.+ +..++..++++|..|..-|+.+.+....+.-.. .-...+........ ...+.+.. -+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~---~~~~~~~~~~~~~l-~~~~~~~~---~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK---SSENSNDESTDISL-PMMGISPS---SEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc---ccccccccchhhHH-hhccCCCc---hHHHH
Confidence 356677778765 578999999999999776665554322111000 00001111111111 11112111 11122
Q ss_pred hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCC-cccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 203 GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGF-DEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 203 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
-..++..|++.+++..- ..-...+..++.++... ...+...+ ...++.++..+++.++..++..+.-|..|..
T Consensus 84 ~~vvi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 84 PTVVINALMRILRDPSL-SSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 23356778888877532 22334566666655322 11222332 3478889999987777888887777776643
No 260
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=68.76 E-value=42 Score=25.43 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=51.4
Q ss_pred HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 121 EAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMAL 188 (397)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL 188 (397)
..+.+..|++..+.++......++..+..+..++.....+.+-|+...|.++=..-++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45667888889988877788899999999999888888888999988876665444555554444443
No 261
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=68.27 E-value=3.9 Score=40.06 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=45.9
Q ss_pred hcCCHHHHHHHHHHHHHHhccCchhhHHHHH-HcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 259 ENGSLQAREHAVGALLMMCQSDRCKYREPIL-REGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~-~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
.+.++++++.+..++.+++.+. +.|.... +...-..+++++...-+++-+.+..++..+..+
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~--~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCL--ENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGEN 400 (763)
T ss_pred cccChHHHHHHHHHHHHheecc--cccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhh
Confidence 3567999999999999999886 4454443 355556667777777888888888777766654
No 262
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=67.14 E-value=15 Score=30.08 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=59.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcCC
Q 015988 123 GALEPIISFLQSPDLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEILRY-GSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 123 g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~aL~nLs~~ 194 (397)
.++..|.+-|.+.++.++..|+.+|-.+..+.. ....+...+++..|..++.. .+++++...+..|...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 356677788888899999999999988887664 45677788899999999987 7889999999998888753
No 263
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.11 E-value=16 Score=29.82 Aligned_cols=75 Identities=15% Similarity=0.078 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--hhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCc
Q 015988 163 SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP--DNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFD 238 (397)
Q Consensus 163 ~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~ 238 (397)
..++..|.+-|.++++.++..|+..|..+..+. .....+...+.++.|++++.. .....++..++.++.+-+..-
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHHh
Confidence 346777888888899999999999999998863 345677778899999999976 345788899999988776433
No 264
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=66.55 E-value=84 Score=32.17 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=56.2
Q ss_pred ChHHHHHhhC----CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh-c--CCHHHHHHHHHHHHhhcCC-c
Q 015988 124 ALEPIISFLQ----SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR-Y--GSQQAKFDAVMALSNLSTH-P 195 (397)
Q Consensus 124 ~i~~L~~lL~----~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~-~--~~~~~~~~a~~aL~nLs~~-~ 195 (397)
.++.|...|. ..+.+-+...+.+|.|+.. ...++.+...+. . .+..+|..|+++|..++.. +
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p 512 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP 512 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc
Confidence 4555555443 2344445566777777643 234455555554 2 2467899999999988752 2
Q ss_pred hhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHH
Q 015988 196 DNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIE 232 (397)
Q Consensus 196 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 232 (397)
+ .+-+.+..+..+..++.+++..|.-+|.
T Consensus 513 ~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 513 R--------KVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred h--------HHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 2 2345677777776666777777777665
No 265
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=66.50 E-value=76 Score=28.94 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=74.1
Q ss_pred HHHhCCChH-HHHHHhhhcccChHHHHHHHHHHHHhcCCccc-------------------------chhhhhccCcHHH
Q 015988 200 IILGTNPIP-SIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG-------------------------RIVLTSEEGGVLA 253 (397)
Q Consensus 200 ~i~~~g~i~-~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~-------------------------~~~~~~~~g~i~~ 253 (397)
.+++.++++ -|+.+|.++..+.++...++.+|.+|+..-+. +..+. +.+++..
T Consensus 35 ~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl-~~~~l~~ 113 (266)
T PF04821_consen 35 QLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFL-DPRVLKA 113 (266)
T ss_pred HHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHc-ccHHHHH
Confidence 344455555 47777777655678888999999988652111 12233 4556666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHHhccCc-----------hhhH----HHHHHcCChHHHHHHhhcC-CH
Q 015988 254 VVEVLEN-----------GSLQAREHAVGALLMMCQSDR-----------CKYR----EPILREGVIPGLLELTIQG-TP 306 (397)
Q Consensus 254 Lv~lL~~-----------~~~~v~~~a~~~L~~L~~~~~-----------~~~r----~~i~~~g~v~~L~~ll~~~-~~ 306 (397)
++.++.. .+..+.+.++..+.|+..-++ ...+ ..+.+.|+...|+.+..+. ..
T Consensus 114 ~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~ 193 (266)
T PF04821_consen 114 LIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQES 193 (266)
T ss_pred HHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCcccc
Confidence 6666521 124577889999999966531 1122 3344578888888888664 22
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 015988 307 KSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 307 ~~~~~A~~~L~~l~~~~~ 324 (397)
.-....+.++..+-++..
T Consensus 194 ~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 194 DFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred chhhHHHHHHHHHHcCCC
Confidence 333355566666655553
No 266
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=66.47 E-value=20 Score=29.21 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=55.7
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhh----cccChHHHHHHHHHHHHhc
Q 015988 164 GAIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIF----CKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 164 g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~nL~ 235 (397)
.++..+.+-|.++++.++..|+..|-.+..+ ......+...+++..|++++.. ...+..+....+.++..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4577777888899999999999999999886 3456778888889999999964 1234677788888777553
No 267
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=64.15 E-value=52 Score=26.76 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=57.1
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHH-HHHHhhc---CCHHHHHHHHHHHHHhhcC
Q 015988 250 GVLAVVEVLEN-GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPG-LLELTIQ---GTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 250 ~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~-L~~ll~~---~~~~~~~~A~~~L~~l~~~ 322 (397)
++..|..-|.+ .++.++..|+.+|..+..+.+.....+|.+...+.. |++++.. ....++.+...++...+..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 45666666663 578899999999999988776678888888888987 9999864 2358899999988877643
No 268
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.55 E-value=1.2e+02 Score=31.89 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=61.7
Q ss_pred CChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhccCchh
Q 015988 205 NPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE-NGSLQAREHAVGALLMMCQSDRCK 283 (397)
Q Consensus 205 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~L~~~~~~~ 283 (397)
++|..|++.--++ .+.++++.|..+|.-++.. +...++..+.+|. +.++.||..++.+|.-.|.+. .
T Consensus 554 kair~lLh~aVsD-~nDDVrRaAVialGFVl~~---------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt--G 621 (929)
T KOG2062|consen 554 KAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR---------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGT--G 621 (929)
T ss_pred hhHHHhhcccccc-cchHHHHHHHHHheeeEec---------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC--C
Confidence 4455555553333 2346667777776644322 2234566777775 467999999999999999876 2
Q ss_pred hHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 284 YREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 284 ~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
.+. ++..|-.++.+...-||+.|+-++..+
T Consensus 622 ~~e------Ai~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 622 LKE------AINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred cHH------HHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 333 234444566667778899987766655
No 269
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=63.22 E-value=1.7e+02 Score=29.21 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=64.6
Q ss_pred HHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc------CCHHHHHHHHHHHHHHhccCc
Q 015988 208 PSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN------GSLQAREHAVGALLMMCQSDR 281 (397)
Q Consensus 208 ~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~L~~~~~ 281 (397)
+.++..|.+--........+..++.||+...-+.. .+..|..+|.+ .+..+...|+..+..+....+
T Consensus 216 ~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~ 288 (464)
T PF11864_consen 216 SPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG 288 (464)
T ss_pred HHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc
Confidence 34555554422223566788899999987665543 45677777732 235566788888888877653
Q ss_pred hhhHHHHHHc--CChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 282 CKYREPILRE--GVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 282 ~~~r~~i~~~--g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
++....+--. -+++.+...+...++.+-.....++..+-
T Consensus 289 ~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 289 EQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 2222222112 27788888888777766666666555554
No 270
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=63.05 E-value=38 Score=32.36 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=61.9
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhh-cCCHHHHHHHHHHHHHhhc
Q 015988 249 GGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTI-QGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 249 g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~ 321 (397)
.++..+...|.+.++.|...|+.++..+..+.+...|..+-.......|..++. ...+.++++...++...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999987766678888888888889999888 6778899888888777765
No 271
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.07 E-value=1.3e+02 Score=27.36 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=90.7
Q ss_pred CChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhc---------cCcHHHHHHHHhcCC----HHHHHHHHH
Q 015988 205 NPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSE---------EGGVLAVVEVLENGS----LQAREHAVG 271 (397)
Q Consensus 205 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~---------~g~i~~Lv~lL~~~~----~~v~~~a~~ 271 (397)
|..+.+..++-.+--++...+.++.+|..|+..+... ++.. .+.+|.++.-++.++ ......++.
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~--lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDP--LIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAE 137 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCcc--ccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 4555565555443222344578888888887655432 2211 123455555555555 133456667
Q ss_pred HHHHHhccCch---------------------------hhHHHHH---HcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 272 ALLMMCQSDRC---------------------------KYREPIL---REGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 272 ~L~~L~~~~~~---------------------------~~r~~i~---~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
.|..+|...+. ..|+.+. +...+..|..++..+.+..|.....+|+.+-.
T Consensus 138 ~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~ 217 (262)
T PF14225_consen 138 ALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLP 217 (262)
T ss_pred HHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 77777653210 0112221 12356667788888889999999999999977
Q ss_pred CCCCCcccCcCchHHHHHHhhccCccchhhHHHHHHHHHHHHHh
Q 015988 322 SPYPRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVS 365 (397)
Q Consensus 322 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~~~ 365 (397)
....+.-+....+.++++ +. .++...+|.++|+.++..+
T Consensus 218 ~~d~~~~~~~dlispllr-lL----~t~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 218 HVDMRSPHGADLISPLLR-LL----QTDLWMEALEVLDEIVTRS 256 (262)
T ss_pred cccCCCCcchHHHHHHHH-Hh----CCccHHHHHHHHHHHHhhc
Confidence 665444455566666654 32 2234478999999988765
No 272
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=60.60 E-value=1.3e+02 Score=27.30 Aligned_cols=212 Identities=14% Similarity=0.090 Sum_probs=118.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcC--CCh-hHHHHHHHHHHhhhcChhhHHHHHH
Q 015988 46 RALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRA--PDS-DHESALLALLNLAVKDEKNKIKIVE 121 (397)
Q Consensus 46 ~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~--~~~-~~~~a~~~L~~L~~~~~~~~~~i~~ 121 (397)
.|-..|.++++.+|.+|+..|......-+... +... |..|+++..+ .|. ....++..+..|.+...-.
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~------ 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF--LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS------ 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC------
Confidence 34556778999999999999999887643222 2222 5555555443 222 2455577777766422111
Q ss_pred cCChHHHHHhh-CC-----CCHHHHHHHHHHHHHHhcCCCCchhhh--hcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhc
Q 015988 122 AGALEPIISFL-QS-----PDLNLQEYAAAALLTLSASSVNKPFIS--ASGAIPLLVEILRY-GSQQAKFDAVMALSNLS 192 (397)
Q Consensus 122 ~g~i~~L~~lL-~~-----~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~L~~lL~~-~~~~~~~~a~~aL~nLs 192 (397)
.+....+++-+ ++ -....|......+..+..+ ....+. ..+.+..+++.+.. .||.-...+...+..+.
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 11122222222 21 1345667777777777543 223333 24567777777754 46777777777777665
Q ss_pred CCchhHHHHHhCCChHHHHHHhhh-------cccC-h-HH-HHHHHHHHHH-hcCCcccchhhhhccCcHHHHHHHHhcC
Q 015988 193 THPDNLSIILGTNPIPSIVDLLIF-------CKKS-S-KT-AEKCTSLIES-LVGFDEGRIVLTSEEGGVLAVVEVLENG 261 (397)
Q Consensus 193 ~~~~~~~~i~~~g~i~~Lv~ll~~-------~~~~-~-~~-~~~a~~~L~n-L~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 261 (397)
..-+ + ....+.+.+.+.. ++++ + .+ .+.-...|.+ |+..+.- ..-+++.|++-|.++
T Consensus 153 ~~~~----~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f------a~~~~p~LleKL~s~ 220 (262)
T PF14500_consen 153 QEFD----I--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF------APFAFPLLLEKLDST 220 (262)
T ss_pred Hhcc----c--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh------HHHHHHHHHHHHcCC
Confidence 5432 1 2334455555432 1111 1 11 1222222332 2333221 234789999999999
Q ss_pred CHHHHHHHHHHHHHHhcc
Q 015988 262 SLQAREHAVGALLMMCQS 279 (397)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~ 279 (397)
.+.++..++.+|...+..
T Consensus 221 ~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 221 SPSVKLDSLQTLKACIEN 238 (262)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 999999999999987664
No 273
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=60.53 E-value=1.9e+02 Score=30.08 Aligned_cols=70 Identities=9% Similarity=0.101 Sum_probs=56.7
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 247 EEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 247 ~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
+.+.++.|+.+++..+..+|...+.-+...... ....+++..+.|++..-+.+.++.+|+.++..+..+.
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~----Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La 397 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH----LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLA 397 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh----cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 457899999999999988887777666666543 4567788889999999999999999999988766553
No 274
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.45 E-value=19 Score=29.21 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=55.9
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--hhHHHHHhCCChHHHHHHhhhcccChH--HHHHHHHHHHHhcC
Q 015988 164 GAIPLLVEILRYGSQQAKFDAVMALSNLSTHP--DNLSIILGTNPIPSIVDLLIFCKKSSK--TAEKCTSLIESLVG 236 (397)
Q Consensus 164 g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~--~~~~a~~~L~nL~~ 236 (397)
.++..|-+-|.++++.++..|+..|..+..+. .....+.....+..|..++.+...... +.+.++.+|...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 45677777888899999999999999998864 455677777788999999987644333 77888888776643
No 275
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=59.57 E-value=73 Score=29.31 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhH--HHHHhCCChHHHHHHhhhc----------ccChHHHHHHHHH
Q 015988 163 SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNL--SIILGTNPIPSIVDLLIFC----------KKSSKTAEKCTSL 230 (397)
Q Consensus 163 ~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~--~~i~~~g~i~~Lv~ll~~~----------~~~~~~~~~a~~~ 230 (397)
.-++|.++.++.+.++++|..++.+|..+....... ..+.+.|..+.+-+.+... .+...+...+..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 457999999999999999999999999998753322 2345566555444443321 1234566777777
Q ss_pred HHHhcC
Q 015988 231 IESLVG 236 (397)
Q Consensus 231 L~nL~~ 236 (397)
|..|+.
T Consensus 198 L~~L~~ 203 (282)
T PF10521_consen 198 LLSLLK 203 (282)
T ss_pred HHHHHH
Confidence 776643
No 276
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.02 E-value=40 Score=34.84 Aligned_cols=149 Identities=19% Similarity=0.115 Sum_probs=84.9
Q ss_pred CCHHHHHHHHhc--CCHHHHHHHHHHHHhhcCC-ch-----hHHHHHh------CCC----hHHHHHHhhhcccChHHHH
Q 015988 164 GAIPLLVEILRY--GSQQAKFDAVMALSNLSTH-PD-----NLSIILG------TNP----IPSIVDLLIFCKKSSKTAE 225 (397)
Q Consensus 164 g~i~~L~~lL~~--~~~~~~~~a~~aL~nLs~~-~~-----~~~~i~~------~g~----i~~Lv~ll~~~~~~~~~~~ 225 (397)
|.+..++..+.. ..+...+.-...|.+++.+ ++ ....+.. .|+ ...++.+|.+. +-.++-
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdse--s~tlRc 317 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSE--SFTLRC 317 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhccc--chhHHH
Confidence 333444444433 2344555666777777764 22 1112221 122 24456666663 334445
Q ss_pred HHHHHHHHhcCCcccchhhhhcc-CcHHHHHHH----HhcCCHHHHHHHHHHHHHHhccCc--hhhHHHHHHcCChHHHH
Q 015988 226 KCTSLIESLVGFDEGRIVLTSEE-GGVLAVVEV----LENGSLQAREHAVGALLMMCQSDR--CKYREPILREGVIPGLL 298 (397)
Q Consensus 226 ~a~~~L~nL~~~~~~~~~~~~~~-g~i~~Lv~l----L~~~~~~v~~~a~~~L~~L~~~~~--~~~r~~i~~~g~v~~L~ 298 (397)
..+.+.+|+...-....+++... .-+..|+++ +....|-+|..|+.++..++.-+. ..-| +.++...+
T Consensus 318 ~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r-----~ev~~lv~ 392 (1128)
T COG5098 318 CFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRR-----HEVIRLVG 392 (1128)
T ss_pred HHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchH-----HHHHHHHH
Confidence 55666677755443333444111 124445554 445679999999999999987652 1222 34455667
Q ss_pred HHhhcCCHHHHHHHHHHHHHh
Q 015988 299 ELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 299 ~ll~~~~~~~~~~A~~~L~~l 319 (397)
.-+.+.+..+|++|+.++..+
T Consensus 393 r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 393 RRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred HHhhhhhHHHHHHHHHHHHHH
Confidence 788888999999999988766
No 277
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.15 E-value=2.7e+02 Score=29.71 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCccchhhhHHHHHHHhcCCCHHHH-HHHHHHHHHHhhhChH-HHHHHHHhHHHHHHhhc
Q 015988 24 ACSPSSSSSFSSSSSSASSAVHRALHLIQSDDPDLK-LEAAREIRRLTKTSQR-CRRQLAQAVQPLVLMLR 92 (397)
Q Consensus 24 ~c~~~~~~~~~~~~~~~~~~l~~lv~lL~s~~~~~~-~~a~~~L~~l~~~~~~-~~~~l~~~v~~Lv~lL~ 92 (397)
+|-.......+.+++.+-..++-+=+.|...|.+.| +.|+..+..++.+.+. ....+...+..+++..+
T Consensus 343 VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~ 413 (960)
T KOG1992|consen 343 VVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYS 413 (960)
T ss_pred hcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 344445556666777777777777777765566654 4566677888876522 23333333666666443
No 278
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=56.55 E-value=66 Score=24.84 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHH
Q 015988 98 HESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQE 141 (397)
Q Consensus 98 ~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 141 (397)
....+..+..|+. .|+....+++.|+++.|+.+|..+|.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 5566778888888 788999999999999999999998877643
No 279
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.13 E-value=58 Score=33.94 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC--CChhHHHHHHHHHHhhhc
Q 015988 55 DPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA--PDSDHESALLALLNLAVK 111 (397)
Q Consensus 55 ~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~ 111 (397)
+.++|+.|..+|+-++..+++. .+..|++|.. +..++..++.+|+..|.+
T Consensus 568 nDDVrRaAVialGFVl~~dp~~-------~~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRDPEQ-------LPSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred chHHHHHHHHHheeeEecChhh-------chHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 4455555555555554443221 4566666655 333466667777776663
No 280
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=55.35 E-value=2.6e+02 Score=29.05 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=49.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-------HHHHHHHHhHHHHHHhhcC-CCh-hHHHHHHHHHHhhhc
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQ-------RCRRQLAQAVQPLVLMLRA-PDS-DHESALLALLNLAVK 111 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~-------~~~~~l~~~v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~ 111 (397)
.+.++.+|+.++..+++.+..|+..+....+.+. +--.+++.....|.+...+ .+. .+...+..|.-|+..
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt 126 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMT 126 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHhee
Confidence 4678899999999999999999999999887641 1123333335555555555 222 377777777777763
Q ss_pred C
Q 015988 112 D 112 (397)
Q Consensus 112 ~ 112 (397)
.
T Consensus 127 ~ 127 (878)
T KOG2005|consen 127 M 127 (878)
T ss_pred e
Confidence 3
No 281
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=54.40 E-value=1.6e+02 Score=26.19 Aligned_cols=131 Identities=15% Similarity=0.074 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccC----------------hHHHHHHHHHHHHhcCCcccc
Q 015988 178 QQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKS----------------SKTAEKCTSLIESLVGFDEGR 241 (397)
Q Consensus 178 ~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~----------------~~~~~~a~~~L~nL~~~~~~~ 241 (397)
......+|..+..|...++....+.+.+.++.+.+.+..-++. ..+...=...|+.|+....|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4555667888888988888777777888888888777653110 012333455788889999998
Q ss_pred hhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 242 IVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 242 ~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
..+- +.|....+..+....+. -....-+|.+|=...+...| ..|-+.|..++..+|.+|...|..+.
T Consensus 158 ~lLe-~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R---------~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLE-RWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR---------IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHH-HCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH---------HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 7765 88999999999887543 12222345555222211122 22346788899999999999887653
No 282
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=53.26 E-value=31 Score=29.98 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=44.9
Q ss_pred hHHHHHhCCChHHHHHHhhhcccC----------------hHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHHHHHh
Q 015988 197 NLSIILGTNPIPSIVDLLIFCKKS----------------SKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVVEVLE 259 (397)
Q Consensus 197 ~~~~i~~~g~i~~Lv~ll~~~~~~----------------~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv~lL~ 259 (397)
.++.+.+.|++..++++|+.+-.. ..+...|...|..++.++. ++..+. .-++.++..+.
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~---~~~~~l~~~~~ 111 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLF---KHLDFLISIFM 111 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHH---HHHH-----HH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHH---HHHhHHHHHHH
Confidence 334555688888888888764222 3577889999999987654 444443 23343344443
Q ss_pred cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCC
Q 015988 260 NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGT 305 (397)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~ 305 (397)
......--.+..+|..+-.++ .+....+.+.. +..+++++...+
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN-~~L~~~i~e~~-I~~~i~ll~~~g 155 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDN-PELCESISEEH-IEKFIELLRKHG 155 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT--------------------------
T ss_pred HhhccCCchHHHHHHHHHHCc-HHHHHHhhHHH-HHHHHHHHHHcC
Confidence 322111134677788887776 36666666544 888888887633
No 283
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.50 E-value=1.3e+02 Score=31.40 Aligned_cols=143 Identities=13% Similarity=0.164 Sum_probs=84.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcC--Cchh----HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh-cCCccc
Q 015988 168 LLVEILRYGSQQAKFDAVMALSNLST--HPDN----LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL-VGFDEG 240 (397)
Q Consensus 168 ~L~~lL~~~~~~~~~~a~~aL~nLs~--~~~~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL-~~~~~~ 240 (397)
.|.+-|+-.|.++|.+|+..+.++-. +++. ...+++. -...|.++|+++-+ .++..|..-+... +..
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p--~VRS~a~~gv~k~~s~f--- 251 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYP--MVRSTAILGVCKITSKF--- 251 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHH---
Confidence 34445556789999999999999854 3332 3334442 35778889988643 3433333222211 110
Q ss_pred chhhhhccCcHHHHHHHH----h-cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHH
Q 015988 241 RIVLTSEEGGVLAVVEVL----E-NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTL 315 (397)
Q Consensus 241 ~~~~~~~~g~i~~Lv~lL----~-~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~ 315 (397)
.. ++ -...+..|+..+ . ....+||-..+..|-.+..++ ...-+.+. ++|.|-..+.+.+..+|.+++.+
T Consensus 252 We-~i-P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np---~sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 252 WE-MI-PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP---LSHPLLEQ-LLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred HH-Hc-CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc---cchhHHHH-HHHhcchhhhccchhHHHHHHHH
Confidence 00 11 112222222222 1 233578888888888888765 23344443 46788888899999999999998
Q ss_pred HHHhhcC
Q 015988 316 LQLLRDS 322 (397)
Q Consensus 316 L~~l~~~ 322 (397)
|-.+...
T Consensus 326 ll~ik~v 332 (1005)
T KOG1949|consen 326 LLKIKAV 332 (1005)
T ss_pred HHHHHhh
Confidence 8777544
No 284
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=51.95 E-value=2.3e+02 Score=27.29 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhhcCCchhHHHHHhCC---ChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHH
Q 015988 177 SQQAKFDAVMALSNLSTHPDNLSIILGTN---PIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLA 253 (397)
Q Consensus 177 ~~~~~~~a~~aL~nLs~~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~ 253 (397)
+..+..+|+.+|..+..+++....+-+.- .++..+..+..+.....+....+.+|..=-..+. ++ ....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~-~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IM-TSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----cc-chhhHHH
Confidence 45777899999999888877665555421 3455566665554444556666666653222221 22 3445556
Q ss_pred HHHHHhc-----CCHHHHHHHHHHHHHHhccCchhhHHHHHH-cC-ChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 254 VVEVLEN-----GSLQAREHAVGALLMMCQSDRCKYREPILR-EG-VIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 254 Lv~lL~~-----~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~-~g-~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
++..+.. ++..+....+.++.++.... +..+.+ .+ .++.++..+.+....++.+|..++..+
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~----p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQF----PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 6665532 45678888999999998754 344554 33 788999888888888888887766555
No 285
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=51.92 E-value=12 Score=28.76 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHH
Q 015988 225 EKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAR 266 (397)
Q Consensus 225 ~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~ 266 (397)
...+.-+..|+..++-...++ +.|+++.|+.+|.+.+.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv-~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELV-ELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHH-HcCCHHHHHHHHCCCCccee
Confidence 567777888999998888888 89999999999998886654
No 286
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=51.25 E-value=59 Score=21.98 Aligned_cols=49 Identities=31% Similarity=0.453 Sum_probs=36.4
Q ss_pred HHHHhccCchhhHHHHHHcCChHHHHHHh-hcCCHHHHHHHHHHHHHhhcCC
Q 015988 273 LLMMCQSDRCKYREPILREGVIPGLLELT-IQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 273 L~~L~~~~~~~~r~~i~~~g~v~~L~~ll-~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
|.-||... .+|+.+++.|+-+.|-.+- ...++.+++..-.++..|....
T Consensus 2 LllL~~T~--~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE 51 (58)
T PF04064_consen 2 LLLLCATR--EGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDE 51 (58)
T ss_pred HhHHhccH--HHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 45667663 7999999999777776643 4467899998888888876543
No 287
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=50.90 E-value=51 Score=31.11 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhc--CCHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCchhHHHHHh-------CCCh
Q 015988 140 QEYAAAALLTLSASSVNKPFISAS--GAIPLLVEILRYG---SQQAKFDAVMALSNLSTHPDNLSIILG-------TNPI 207 (397)
Q Consensus 140 ~~~a~~~L~nLs~~~~~~~~i~~~--g~i~~L~~lL~~~---~~~~~~~a~~aL~nLs~~~~~~~~i~~-------~g~i 207 (397)
+..|+..+..+.........+... +.+..|+++++.+ ...++..|+.+|..++........++. .|++
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL 318 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGIL 318 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccH
Confidence 334444444444444556666654 4999999999765 368899999999999986543333332 5666
Q ss_pred HHHHH
Q 015988 208 PSIVD 212 (397)
Q Consensus 208 ~~Lv~ 212 (397)
..+++
T Consensus 319 ~~llR 323 (329)
T PF06012_consen 319 PQLLR 323 (329)
T ss_pred HHHHH
Confidence 66554
No 288
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=47.47 E-value=1.8e+02 Score=24.82 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=86.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh-cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh
Q 015988 125 LEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA-SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILG 203 (397)
Q Consensus 125 i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~ 203 (397)
++.++++.-+.+..++..|+.++.-+... -++. ...+|.|+.+..++++.++..|...+..+....+.--.-.-
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~q-----GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQ-----GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhc-----CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667777788889999999888776532 1121 23688999999999999999999999999775432211111
Q ss_pred CCChHHHHHHhhhcccChH--H---HHHHHHHHHHhcCCc-ccchhhhhccCcHHHHHHHHhcC--------CHHHHHHH
Q 015988 204 TNPIPSIVDLLIFCKKSSK--T---AEKCTSLIESLVGFD-EGRIVLTSEEGGVLAVVEVLENG--------SLQAREHA 269 (397)
Q Consensus 204 ~g~i~~Lv~ll~~~~~~~~--~---~~~a~~~L~nL~~~~-~~~~~~~~~~g~i~~Lv~lL~~~--------~~~v~~~a 269 (397)
..++..-.++-+.-..+.. . ....+.-+..+.... ..|. ..+..|+..++.. .+.-....
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~------~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRR------KFLKSLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHH------HHHHHHHHHHHhhccccccccchhHHHHH
Confidence 1134443333332111111 1 345566666665532 2333 3456666666542 24445667
Q ss_pred HHHHHHHhccCc
Q 015988 270 VGALLMMCQSDR 281 (397)
Q Consensus 270 ~~~L~~L~~~~~ 281 (397)
..+..||+.-+.
T Consensus 159 ~Fla~nLA~l~y 170 (187)
T PF12830_consen 159 LFLAENLATLPY 170 (187)
T ss_pred HHHHHHHhcCCC
Confidence 777778877653
No 289
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=47.19 E-value=3.8e+02 Score=28.48 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=63.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHH-hC
Q 015988 127 PIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIIL-GT 204 (397)
Q Consensus 127 ~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~-~~ 204 (397)
.+...+..++..+....+.++.++..-+.....- ...-++.-..-.+..-..+......+|..++.. ++....+. +.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~ 523 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDP 523 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCc
Confidence 3444555666666677777777776543211111 111222222222222345666777888888874 45544444 47
Q ss_pred CChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 205 NPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 205 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
+....++.++.++ +.++.+.|..+|....
T Consensus 524 ~~~~~i~s~lfsp--~~~l~qaA~~llk~~~ 552 (727)
T PF12726_consen 524 DAAQAIWSLLFSP--DDDLYQAAQDLLKQAF 552 (727)
T ss_pred chhhHHHhheeCC--ChHHHHHHHHHHHHHh
Confidence 8888999999885 4578899999998764
No 290
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.26 E-value=1.3e+02 Score=24.71 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC----CChhHHHHHHHHHHhhhcChhh
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA----PDSDHESALLALLNLAVKDEKN 115 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~----~~~~~~~a~~~L~~L~~~~~~~ 115 (397)
....+..++++|+.+........+..|.+-..-.-+--..+. -..|-...+. +-.....|+..|+.+-.+-
T Consensus 20 ~a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~AA~VK--A~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY--- 94 (154)
T PF11791_consen 20 NAEQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEAAYVK--AEFLAAIAKGEISSPLISPAEAVELLGTMLGGY--- 94 (154)
T ss_dssp -HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HHHHHH--HHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST---
T ss_pred CHHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChHHHHH--HHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC---
Confidence 466677788888766543332222222222110000000111 1223333332 2223566666666654321
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhc
Q 015988 116 KIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSA 152 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~ 152 (397)
-+++|+.+|.+.+.++...|+.+|.+-..
T Consensus 95 --------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 --------NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp --------THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred --------cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 38999999999999999999999987654
No 291
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=46.10 E-value=99 Score=29.18 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhCC--ChHHHHHHhhhccc-ChHHHHHHHHHHHHhcCCcccchhhh
Q 015988 179 QAKFDAVMALSNLSTHPDNLSIILGTN--PIPSIVDLLIFCKK-SSKTAEKCTSLIESLVGFDEGRIVLT 245 (397)
Q Consensus 179 ~~~~~a~~aL~nLs~~~~~~~~i~~~g--~i~~Lv~ll~~~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~ 245 (397)
.+|..|+..+..+.........+...+ .+..|+++++.+.. ...++..|+.+|..++........++
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344555656655565666677777755 89999999987532 35688899999998887655444433
No 292
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=45.62 E-value=3.2e+02 Score=27.18 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=59.9
Q ss_pred HHHHHHhhcC----CChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCC------CHHHHHHHHHHHHHHhcC
Q 015988 84 VQPLVLMLRA----PDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSP------DLNLQEYAAAALLTLSAS 153 (397)
Q Consensus 84 v~~Lv~lL~~----~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~------~~~~~~~a~~~L~nLs~~ 153 (397)
++.++..|.+ .+ ....+-.++.||++.. .. .-.+..|+.+|.++ +..+..-|+..+..+...
T Consensus 215 l~~~i~vLCsi~~~~~-l~~~~w~~m~nL~~S~-~g------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~ 286 (464)
T PF11864_consen 215 LSPCIEVLCSIVNSVS-LCKPSWRTMRNLLKSH-LG------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG 286 (464)
T ss_pred HHHHHHHHhhHhcccc-cchhHHHHHHHHHcCc-cH------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence 4444444444 22 2555667788887632 11 12356788888322 344556677777776655
Q ss_pred C--CCchhhhhcC--CHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 154 S--VNKPFISASG--AIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 154 ~--~~~~~i~~~g--~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
. +....+--.- +++.+...++.+++.+-...+..+.++-.
T Consensus 287 ~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 287 SGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred cccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 4 2333332233 78888888888777666666666666653
No 293
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=45.60 E-value=1.3e+02 Score=30.00 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=51.5
Q ss_pred hccCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCc------------hhhHHHHHHcCChHHHHHHhhc-CCHHHHHH
Q 015988 246 SEEGGVLAVVEVLEN-GSLQAREHAVGALLMMCQSDR------------CKYREPILREGVIPGLLELTIQ-GTPKSQTK 311 (397)
Q Consensus 246 ~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~------------~~~r~~i~~~g~v~~L~~ll~~-~~~~~~~~ 311 (397)
.+.+.|+.|+.+|.. .+.+++..|+..|+.+.+... ...-..+.....+..|++.+.. .....-.+
T Consensus 59 ~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn 138 (475)
T PF04499_consen 59 AEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVN 138 (475)
T ss_pred HHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHH
Confidence 378999999999973 458889999988888844321 2344556667788888887763 33444555
Q ss_pred HHHH-HHHhhcC
Q 015988 312 ARTL-LQLLRDS 322 (397)
Q Consensus 312 A~~~-L~~l~~~ 322 (397)
++++ +..+.++
T Consensus 139 ~v~IlieLIRkn 150 (475)
T PF04499_consen 139 GVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHhc
Confidence 5554 5555444
No 294
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.53 E-value=1.2e+02 Score=30.73 Aligned_cols=112 Identities=9% Similarity=0.003 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHH
Q 015988 133 QSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR-YGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIV 211 (397)
Q Consensus 133 ~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv 211 (397)
+.++.+++..|+.+|...+.+|. ..++..+++|. +.++.+|...+-+|.--+.....+ -+++.|-
T Consensus 562 sD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~ 627 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILE 627 (926)
T ss_pred ccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHH
Confidence 44566777777777766665443 34555566664 467788877777776555442211 1233444
Q ss_pred HHhhhcccChHHHHHHHHHHHHh-cCCcccchhhhhccCcHHHHHHHHhcCC
Q 015988 212 DLLIFCKKSSKTAEKCTSLIESL-VGFDEGRIVLTSEEGGVLAVVEVLENGS 262 (397)
Q Consensus 212 ~ll~~~~~~~~~~~~a~~~L~nL-~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 262 (397)
.++.+. ..-+++.|+.++..+ .++++....-+ .+.+..+.+++...+
T Consensus 628 ~L~~D~--~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 628 ALMYDT--NDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred HHhhCc--HHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence 444443 234556666666655 22222211111 245666666665444
No 295
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.13 E-value=14 Score=34.69 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCchhhHHHHHHcCChHHHHH--HhhcCCHHHHHHHHHHHHHhhcCCC-CCcccC
Q 015988 268 HAVGALLMMCQSDRCKYREPILREGVIPGLLE--LTIQGTPKSQTKARTLLQLLRDSPY-PRSELQ 330 (397)
Q Consensus 268 ~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~--ll~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~ 330 (397)
+..+.+.+||+.. .+.+..+.+.||++.++. -+.+.+|-+++....+++++..+.. .|+.+.
T Consensus 375 Hvir~ia~lcyk~-~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKF-STAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhC-CchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 3778999999977 478999999999999886 4577899999999999999976543 555443
No 296
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=44.73 E-value=3e+02 Score=26.54 Aligned_cols=129 Identities=22% Similarity=0.192 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHhhhChH-HHHHHHHhHHHHHHhhcC-C--C-hhHHHHHHHHHHhhhcChh------------hHHH
Q 015988 56 PDLKLEAAREIRRLTKTSQR-CRRQLAQAVQPLVLMLRA-P--D-SDHESALLALLNLAVKDEK------------NKIK 118 (397)
Q Consensus 56 ~~~~~~a~~~L~~l~~~~~~-~~~~l~~~v~~Lv~lL~~-~--~-~~~~~a~~~L~~L~~~~~~------------~~~~ 118 (397)
..-|..|...|..+++.-++ ....+...|..++.-... + + ..+..|+..+..++..... +-..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 34566677778888864322 222333334444443322 1 1 2467788888888764321 2334
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 119 IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMAL 188 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL 188 (397)
++..-++|-|- -=.+..+-++..|+..+......= .+.. -.+.++.++..|.+++.-+...|+.++
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~--l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQ--LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHH--HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 44445555554 111334557777777666664321 1222 245899999999999998988888764
No 297
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=44.53 E-value=1.5e+02 Score=23.08 Aligned_cols=42 Identities=7% Similarity=0.070 Sum_probs=33.8
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHH
Q 015988 38 SSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQL 80 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l 80 (397)
....-+++.|++.|...++++...|+..|...+..+ ...+.+
T Consensus 4 ~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~ 45 (115)
T PF14663_consen 4 DFEDWGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYL 45 (115)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHH
Confidence 356678999999999999999999999999999876 443333
No 298
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=40.26 E-value=86 Score=22.32 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHhhh
Q 015988 352 GKAKKMLAEMVQVSMEQSLRHLQQRA 377 (397)
Q Consensus 352 ~~A~~~L~~l~~~~~~~~~~~~~~~~ 377 (397)
+-+.++||=+.+.|++.|++.++.|.
T Consensus 37 ~lvremLRPmLkeWLD~nLP~lVErl 62 (73)
T PF10691_consen 37 DLVREMLRPMLKEWLDENLPGLVERL 62 (73)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 67889999999999999999999764
No 299
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.62 E-value=1.3e+02 Score=30.12 Aligned_cols=116 Identities=14% Similarity=0.204 Sum_probs=73.5
Q ss_pred cCcHHHHHHHHhcC----CHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHH----HHHHHHh
Q 015988 248 EGGVLAVVEVLENG----SLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKA----RTLLQLL 319 (397)
Q Consensus 248 ~g~i~~Lv~lL~~~----~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A----~~~L~~l 319 (397)
+.+...|.+||... +++.++..+.+|.-|-. +..|.-...++.+..++..++...|+-+ +..++++
T Consensus 15 a~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrN------k~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~ 88 (616)
T KOG2229|consen 15 ANFPSELKDLLRTNHTVLPPELREKIVKALILLRN------KNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNI 88 (616)
T ss_pred HhhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhc------cCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 35677899999864 48899999999887743 3344555678888899988888777665 3344444
Q ss_pred hcCCCCCcccCcCchHHHHHHhhccCccchhhHHHHHHHHHHHHHhHHHhHHH
Q 015988 320 RDSPYPRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVSMEQSLRH 372 (397)
Q Consensus 320 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~ 372 (397)
-... ...-....+...+..|+.+++.. .+..|..++..|-++..|...+.
T Consensus 89 n~~~--kn~klnkslq~~~fsml~~~d~~-~ak~a~~~~~eL~kr~iW~d~~t 138 (616)
T KOG2229|consen 89 NKKH--KNDKLNKSLQAFMFSMLDQSDST-AAKMALDTMIELYKRNIWNDSKT 138 (616)
T ss_pred Hhhc--ccchHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHhcccccchh
Confidence 2221 11112234555565666544333 55788888888877766644444
No 300
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=39.32 E-value=3e+02 Score=25.06 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCCC--------CchhhhhcCCHHHHHHHHhcCC----HHHHHHHHHHHHhhcCCchhHHHHHhCCC
Q 015988 139 LQEYAAAALLTLSASSV--------NKPFISASGAIPLLVEILRYGS----QQAKFDAVMALSNLSTHPDNLSIILGTNP 206 (397)
Q Consensus 139 ~~~~a~~~L~nLs~~~~--------~~~~i~~~g~i~~L~~lL~~~~----~~~~~~a~~aL~nLs~~~~~~~~i~~~g~ 206 (397)
..+.++.+|..|+...+ ++-.+.-.+.+|.++.-+.+++ ......++..|..++.... .+.
T Consensus 78 t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~ 150 (262)
T PF14225_consen 78 TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPN 150 (262)
T ss_pred cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------Ccc
Confidence 45566777777765322 2222223456667776666666 1334456667777663211 122
Q ss_pred hHHHHHHhhhc--ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhh
Q 015988 207 IPSIVDLLIFC--KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKY 284 (397)
Q Consensus 207 i~~Lv~ll~~~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~ 284 (397)
+..++.....+ .+..+....++..|+.-- .++. +...+..|+++|.++.+.++...+.+|..+-..- +.
T Consensus 151 La~il~~ya~~~fr~~~dfl~~v~~~l~~~f-~P~~------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~--d~ 221 (262)
T PF14225_consen 151 LARILSSYAKGRFRDKDDFLSQVVSYLREAF-FPDH------EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHV--DM 221 (262)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-Cchh------HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccc--cC
Confidence 33333333222 122345566666665321 1111 2346678999999988999999999999998875 44
Q ss_pred HHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 285 REPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 285 r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
+.. ...+.+..|.+++.. .--..|..+|...
T Consensus 222 ~~~-~~~dlispllrlL~t---~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 222 RSP-HGADLISPLLRLLQT---DLWMEALEVLDEI 252 (262)
T ss_pred CCC-cchHHHHHHHHHhCC---ccHHHHHHHHHHH
Confidence 433 334577777777744 3344566666655
No 301
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=39.15 E-value=94 Score=24.24 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=32.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR 290 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~ 290 (397)
+|+.|+.-|..++++|+..|+.+|...|..+ ..-+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHH
Confidence 6788888898899999999999999999875 45555554
No 302
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.56 E-value=85 Score=31.18 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=53.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcC--CHHHHHHHHHHHH
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQG--TPKSQTKARTLLQ 317 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~--~~~~~~~A~~~L~ 317 (397)
++..|.+.+.+.++.++..|+.+|..+..+-+......|.+.+++.-++++.... +..+|+++..+|.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 4556666677777889999999888887766556777888899999999988665 5688999988775
No 303
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=38.40 E-value=1.6e+02 Score=23.31 Aligned_cols=130 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchh---------HHHHHh---
Q 015988 136 DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN---------LSIILG--- 203 (397)
Q Consensus 136 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~---------~~~i~~--- 203 (397)
.+-++...+.++..++..+-... .+..++.++.++.+ ++......+.+|..+...-.. +..-+.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~---Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l 76 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQ---WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDAL 76 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTT---STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhh---CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH
Q ss_pred ----CCChHHHHHHhhhcccC--hHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 204 ----TNPIPSIVDLLIFCKKS--SKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGAL 273 (397)
Q Consensus 204 ----~g~i~~Lv~ll~~~~~~--~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 273 (397)
..+++.+.+++...... ..+...++.++..... --....+. +.+.++.+..+| .++..++.|+.+|
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~-~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELII-NSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHH-SSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhc-cHHHHHHHHHHc--CCHHHHHHHHHhC
No 304
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=38.18 E-value=3.1e+02 Score=26.03 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=58.2
Q ss_pred HHHHHHhhcC------C-Ch-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCC----C------CHHHHHHHHH
Q 015988 84 VQPLVLMLRA------P-DS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQS----P------DLNLQEYAAA 145 (397)
Q Consensus 84 v~~Lv~lL~~------~-~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~----~------~~~~~~~a~~ 145 (397)
+|.++.++.. . +. .....+..+..|.. |+.......=.-.+|.++.++-. . .-.+|..|+.
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 6666666654 1 22 23334455555555 55554444444577888877732 1 2368899999
Q ss_pred HHHHHhcCCCCchhhhhcCCHHHHHHHHhcCC--HHHHHHHHHHHHhhc
Q 015988 146 ALLTLSASSVNKPFISASGAIPLLVEILRYGS--QQAKFDAVMALSNLS 192 (397)
Q Consensus 146 ~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~~a~~aL~nLs 192 (397)
+|..++..-.....-.....+..+.+.|.++. ....+-|+..|..|.
T Consensus 291 ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 291 LLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 99998853322222223344445555554432 333565665555553
No 305
>COG3827 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.05 E-value=51 Score=28.60 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHhh
Q 015988 352 GKAKKMLAEMVQVSMEQSLRHLQQR 376 (397)
Q Consensus 352 ~~A~~~L~~l~~~~~~~~~~~~~~~ 376 (397)
+.|..+||=+.+.|++.|+..++.|
T Consensus 192 E~a~eMLRPmLqdWLDkNLPtLVEr 216 (231)
T COG3827 192 EMAAEMLRPMLQDWLDKNLPTLVER 216 (231)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHH
Confidence 7899999999999999999999866
No 306
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=37.12 E-value=3.3e+02 Score=24.95 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=46.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCch--hhhhcCCHHHHHHHH----h--------cCCHHHHHHHHHHH
Q 015988 123 GALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKP--FISASGAIPLLVEIL----R--------YGSQQAKFDAVMAL 188 (397)
Q Consensus 123 g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~--~i~~~g~i~~L~~lL----~--------~~~~~~~~~a~~aL 188 (397)
-.+|+++.++++.++..+..++.+|..+...-.... .+...|..+.+-..| . .++..+...+..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 358899999999999999999999999986543322 244566555444333 2 23445556666666
Q ss_pred Hhhc
Q 015988 189 SNLS 192 (397)
Q Consensus 189 ~nLs 192 (397)
..|.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6663
No 307
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=35.55 E-value=1e+02 Score=26.41 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=51.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH-cCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR-EGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
.++.++++..+++..++..|+.++.-+.+..- +- .-.+|.|+.+..+.++.++..|..++..+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL-------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGL-------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC-------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 45677777778889999999999988876531 11 1268999999999999999999999888844
No 308
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=35.34 E-value=1.4e+02 Score=31.67 Aligned_cols=62 Identities=15% Similarity=0.055 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC
Q 015988 263 LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 263 ~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
..++.....+|..++..+.++..+.+.+.+....++.++.+.++.+.+.|..+|....+...
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 44677788999999998865566655668999999999999999999999999999886443
No 309
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.84 E-value=4.2e+02 Score=28.57 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=45.7
Q ss_pred ccCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcc-----CchhhHHHHHHcCChHHHHHHhhcC
Q 015988 247 EEGGVLAVVEVLEN-GSLQAREHAVGALLMMCQS-----DRCKYREPILREGVIPGLLELTIQG 304 (397)
Q Consensus 247 ~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~-----~~~~~r~~i~~~g~v~~L~~ll~~~ 304 (397)
+...++.+++++.. .+++++..|...|+.+++. .+......+.....+..|+..+..+
T Consensus 188 d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~ 251 (838)
T KOG2073|consen 188 DQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLED 251 (838)
T ss_pred hHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccC
Confidence 66789999999974 3488899999999999887 4345777888888888888877663
No 310
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=34.72 E-value=1.3e+02 Score=23.92 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=38.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHh---HHHHHHhhc
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTS-QRCRRQLAQA---VQPLVLMLR 92 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~---v~~Lv~lL~ 92 (397)
...+..|.+.|+..++.++.+++..|-.++... +..+..+..- |..+.++=-
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 356777888888889999999999999999864 5666666553 666555543
No 311
>PLN03205 ATR interacting protein; Provisional
Probab=32.75 E-value=2.7e+02 Score=27.03 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=64.2
Q ss_pred HHHHHHhhhcccChHHHHHHHHHHH----HhcCCcccchhhhhccCcHHHHHHHHh-----cCCHHHHHHHHHHHHHHhc
Q 015988 208 PSIVDLLIFCKKSSKTAEKCTSLIE----SLVGFDEGRIVLTSEEGGVLAVVEVLE-----NGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 208 ~~Lv~ll~~~~~~~~~~~~a~~~L~----nL~~~~~~~~~~~~~~g~i~~Lv~lL~-----~~~~~v~~~a~~~L~~L~~ 278 (397)
+.|+++..-+ ...++..++++|. +++.+...-..-+ +.+++ .|++++. +....++-.|+.++--+..
T Consensus 326 EaLLdLC~v~--n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~-~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 326 EPLLDLCKAE--TAVLVHRSLRVLHVLLEHICGDEKRFEASW-DANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHhcC--chhhhHHHHHHHHHHHHHHhCCcccccccc-cccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 4455554443 2345566666554 4444433333322 45554 3444442 2346677788887776655
Q ss_pred cCch-hhHHHHHHcCChHHHHHHhhc-CCHHHHHHHHHHHHHhh
Q 015988 279 SDRC-KYREPILREGVIPGLLELTIQ-GTPKSQTKARTLLQLLR 320 (397)
Q Consensus 279 ~~~~-~~r~~i~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~ 320 (397)
..++ .-|+.|...-+.+.+..+++. ..-.+|+.|..+|..+-
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 4422 346666666788888888865 56799999998877663
No 312
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.59 E-value=2.3e+02 Score=32.11 Aligned_cols=138 Identities=18% Similarity=0.128 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhhcChhhHHHH-HHc-CChHHHHHhhC--CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHH
Q 015988 98 HESALLALLNLAVKDEKNKIKI-VEA-GALEPIISFLQ--SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEIL 173 (397)
Q Consensus 98 ~~~a~~~L~~L~~~~~~~~~~i-~~~-g~i~~L~~lL~--~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL 173 (397)
+..+..++.+.+..+...+..+ ++. |.+-+...+.. .+-.+++...+.++.++-..+...-. .| .+.+++++
T Consensus 813 ~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll---~~-w~sV~eml 888 (1610)
T KOG1848|consen 813 LVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLL---HG-WQSVFEML 888 (1610)
T ss_pred HhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhc---cc-cHHHHHHH
Confidence 4444445555555443333333 232 44444444433 33445666677777777654321111 12 44444444
Q ss_pred hc----C---CHHHHHHHHHHHHhhcCCchh-HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc
Q 015988 174 RY----G---SQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG 240 (397)
Q Consensus 174 ~~----~---~~~~~~~a~~aL~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~ 240 (397)
++ + ...+...+...|+-++.+.-. -..=.-.++|+.++..-+... +..+.-.|++.+|+++..-.+
T Consensus 889 ~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~Qkt-dlNISltAi~lfWtvsDfl~~ 962 (1610)
T KOG1848|consen 889 RSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKT-DLNISLTAIGLFWTVSDFLKN 962 (1610)
T ss_pred HHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhc-cccccHHHHHHHHHHHHHHHh
Confidence 42 2 233444455555555554110 000011345666666665542 445667888888877654433
No 313
>PLN03205 ATR interacting protein; Provisional
Probab=31.55 E-value=2.3e+02 Score=27.45 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=66.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhh--hhcCCHHHHHHHHhc-----CCHHHHHHHHHHHHhhcC--C
Q 015988 125 LEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFI--SASGAIPLLVEILRY-----GSQQAKFDAVMALSNLST--H 194 (397)
Q Consensus 125 i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i--~~~g~i~~L~~lL~~-----~~~~~~~~a~~aL~nLs~--~ 194 (397)
+++|+.+-.-++..+...++++|..+-.+- .++..+ .+.--.-.|++++.. ....++..|+.++--+.. +
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 456666666777777777777777765432 222222 233344455555432 334566777766544433 3
Q ss_pred -chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 195 -PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 195 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
...++.++...+++.+.++|+.. ....+++.++.+|.-|-
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkE-aGl~VqKealhLLfLLL 445 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKE-GGLHVRKEAIHLFYLLL 445 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHh-ccchhhHHHHHHHHHHH
Confidence 23467777778899999999875 24567788887776543
No 314
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=31.28 E-value=4e+02 Score=24.09 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=23.2
Q ss_pred HHHHHHhhcCCC---hhHHHHHHHHHHhhhcChhhHHHHHH
Q 015988 84 VQPLVLMLRAPD---SDHESALLALLNLAVKDEKNKIKIVE 121 (397)
Q Consensus 84 v~~Lv~lL~~~~---~~~~~a~~~L~~L~~~~~~~~~~i~~ 121 (397)
+..|..++.+++ .++..|+.+|..++..++.-|..+++
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 666666666522 25666677777777666666666644
No 315
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=31.16 E-value=4e+02 Score=24.07 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=60.5
Q ss_pred hhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chh-HHHH--HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDN-LSII--LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 161 ~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~-~~~i--~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
.+..+++.++++++.++. .+..+..+ .+. ...+ +-.|-++.|.+++.++.-+.-++..|+.+|..++
T Consensus 70 re~~A~~~li~l~~~~~~--------~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~ 141 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDD--------FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLV 141 (249)
T ss_pred hhhhhHHHHHHHHcCCcc--------hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 456789999999975543 11111111 111 1111 1256788899999887656667788999999886
Q ss_pred CCcc-cchhhhhccCcHHHHHHH-HhcCCHHHHHHHHHHHHHHhc
Q 015988 236 GFDE-GRIVLTSEEGGVLAVVEV-LENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 236 ~~~~-~~~~~~~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~L~~ 278 (397)
.... .|..++ ..+..++.. +...+..+...-+..++.|..
T Consensus 142 ~~~~~~Re~vi---~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~ 183 (249)
T PF06685_consen 142 HEGPISREEVI---QYFRELLNYFLERNPSFLWGSLVADICDLYP 183 (249)
T ss_pred HcCCCCHHHHH---HHHHHHHHHHhccCchHHHHHHHHHHHhcCH
Confidence 6554 455544 344555544 333333334444555555543
No 316
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=30.93 E-value=8.4e+02 Score=27.76 Aligned_cols=231 Identities=16% Similarity=0.126 Sum_probs=116.0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC--hHHHHHHHHh-HHHHH-Hhhc---C--CC----hhHHHHHHHHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTS--QRCRRQLAQA-VQPLV-LMLR---A--PD----SDHESALLALLN 107 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~--~~~~~~l~~~-v~~Lv-~lL~---~--~~----~~~~~a~~~L~~ 107 (397)
.+.++.|+..+-+..+++|.-+..+++.+.... .-.+..+... +..+. -.|. . .+ .+++..+++|..
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 466788888888899999999999999988753 2334334333 22211 1111 1 11 257778888888
Q ss_pred hhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh---hcCCHHHHHHHHhcCCHHHHHHH
Q 015988 108 LAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS---ASGAIPLLVEILRYGSQQAKFDA 184 (397)
Q Consensus 108 L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~~g~i~~L~~lL~~~~~~~~~~a 184 (397)
+..+- +-..+. ..+..+..++..++-+++.-.+..+...-. .+..+. -.-+++..++-|.+.+..++..|
T Consensus 156 ~l~~~--~~s~~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 156 YLKHM--DESLIK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHHhh--hhHhhH--HHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence 77632 111221 124445555554432222211111111100 000000 11245555566677788888888
Q ss_pred HHHHHhhcCCc--hhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccch---hhhhccCcHHHHHHHHh
Q 015988 185 VMALSNLSTHP--DNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRI---VLTSEEGGVLAVVEVLE 259 (397)
Q Consensus 185 ~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~---~~~~~~g~i~~Lv~lL~ 259 (397)
+.++....... .....+. .++..+...+..-.+-..-.......+..++...+... +.-.+.|.++.+...+.
T Consensus 229 a~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~ 306 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLR 306 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHH
Confidence 88877665532 1111111 12222222222211000111222233334444442111 11113478899999988
Q ss_pred cCCHHHHHHHHHHHHHHhccC
Q 015988 260 NGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 260 ~~~~~v~~~a~~~L~~L~~~~ 280 (397)
+.=..++..++..+..+...+
T Consensus 307 ~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 307 HTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 766778888888888887654
No 317
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=30.61 E-value=1e+03 Score=28.52 Aligned_cols=199 Identities=11% Similarity=0.044 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHhhhcChhhHH---HHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHH
Q 015988 97 DHESALLALLNLAVKDEKNKI---KIVEAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEI 172 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~~~---~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~l 172 (397)
+...|+..|+.++...-+... .-+....+.++..++. +.+.++++..+.++.+|...... .+ .. |...++.+
T Consensus 1153 va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~--nI-kS-GWktIF~V 1228 (1780)
T PLN03076 1153 IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN--NV-KS-GWKSMFMV 1228 (1780)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh--hh-hc-CcHHHHHH
Confidence 466777777777653221111 1123456777777665 45778999999999988653321 11 11 44444444
Q ss_pred H----hcCCHHHHHHHHHHHHhhcCCchh------HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcC----Cc
Q 015988 173 L----RYGSQQAKFDAVMALSNLSTHPDN------LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG----FD 238 (397)
Q Consensus 173 L----~~~~~~~~~~a~~aL~nLs~~~~~------~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~----~~ 238 (397)
+ .+..+.+...|..++..+..+.-. ...+ ..+|..|..+.... .+.++.-.|+..|++++. ..
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~-~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSR-FNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCc-CcccccHHHHHHHHHHHHHHHhcc
Confidence 4 345677777777776655432100 0111 12344455554333 224556677777775511 00
Q ss_pred c------------------------cchhhhh----ccCcHHHHHHH---HhcCCHHHHHHHHHHHHHHhccCchhhHHH
Q 015988 239 E------------------------GRIVLTS----EEGGVLAVVEV---LENGSLQAREHAVGALLMMCQSDRCKYREP 287 (397)
Q Consensus 239 ~------------------------~~~~~~~----~~g~i~~Lv~l---L~~~~~~v~~~a~~~L~~L~~~~~~~~r~~ 287 (397)
- .-..+.. ....++.|..+ .....++||..|+..|..+-...+......
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 0 0000000 01234444444 335679999999999988754433345555
Q ss_pred HHH---cCChHHHHHHhh
Q 015988 288 ILR---EGVIPGLLELTI 302 (397)
Q Consensus 288 i~~---~g~v~~L~~ll~ 302 (397)
+|+ .+++-++...+.
T Consensus 1386 ~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1386 LWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555 355666655543
No 318
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=29.99 E-value=1.9e+02 Score=23.87 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=21.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 015988 165 AIPLLVEILRYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 165 ~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~ 194 (397)
-+.+|+.+|.+.+.++...|+.+|.+-.-.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 488999999988999999999999886554
No 319
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=29.88 E-value=4.1e+02 Score=26.61 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=49.9
Q ss_pred HHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhc---CCC-----------CchhhhhcCCHHHHHHHHhc-CCHHH
Q 015988 117 IKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSA---SSV-----------NKPFISASGAIPLLVEILRY-GSQQA 180 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~---~~~-----------~~~~i~~~g~i~~L~~lL~~-~~~~~ 180 (397)
..+.+.+.|+.|+.+|.. .+.+.+..|+.+|+.+.. +.. .-..+.....+..|+..+-. .....
T Consensus 56 ewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~ 135 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSS 135 (475)
T ss_pred HHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcch
Confidence 344568999999999984 467788888888887743 111 12244456677777765542 33555
Q ss_pred HHHHHHHHHhhcC
Q 015988 181 KFDAVMALSNLST 193 (397)
Q Consensus 181 ~~~a~~aL~nLs~ 193 (397)
..+++.++..|-+
T Consensus 136 lvn~v~IlieLIR 148 (475)
T PF04499_consen 136 LVNGVSILIELIR 148 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 6667776666643
No 320
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=29.73 E-value=4.8e+02 Score=24.52 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=133.4
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhh-----hcCCHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 015988 118 KIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFIS-----ASGAIPLLVEILRYG-SQQAKFDAVMALSN 190 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~-----~~g~i~~L~~lL~~~-~~~~~~~a~~aL~n 190 (397)
.+.++|....|+..+...+-+.+..++....|+-... ..+...+ .+..+..|+.- .. .+++-..+-..|..
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHH
Confidence 4677899999999999888888888888877775432 2222222 12233333322 12 35555555556666
Q ss_pred hcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCc-ccchhhhhccCc----HHHHHHHHhcCCHHH
Q 015988 191 LSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFD-EGRIVLTSEEGG----VLAVVEVLENGSLQA 265 (397)
Q Consensus 191 Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~-~~~~~~~~~~g~----i~~Lv~lL~~~~~~v 265 (397)
..+...-.+.+....-...-...++.+. -++...|......+.... .....++ ..+. ...--.++.+++--+
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~--FdiasdA~~tfK~llt~Hk~~vaEfl-~~n~d~ff~e~~~~Ll~s~Nyvt 228 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPN--FDIASDAFSTFKELLTRHKSVVAEFL-IRNYDNFFAEVYEKLLRSENYVT 228 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhHHHHHHHH-HhChhhhHHHHHHHHhcccceeh
Confidence 6666666677777666677667776642 367777888877774433 2333333 2221 233455677788788
Q ss_pred HHHHHHHHHHHhccCc--hhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC
Q 015988 266 REHAVGALLMMCQSDR--CKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 266 ~~~a~~~L~~L~~~~~--~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
+..+...|..+--..+ ....+.+.+...+..+..+|++.+..+|-.|-.+-+.+..++.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 8899999998865432 2233344456789999999999999999999999999998887
No 321
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=29.60 E-value=1.5e+02 Score=28.10 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=58.4
Q ss_pred hHHHHHhhCCC-------CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc----------CCHHHHHHHHHH
Q 015988 125 LEPIISFLQSP-------DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY----------GSQQAKFDAVMA 187 (397)
Q Consensus 125 i~~L~~lL~~~-------~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~----------~~~~~~~~a~~a 187 (397)
+|.++.++... +.........+++.|..+....-..--.-.++.++..+-. +...+|..|+.+
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~l 291 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARL 291 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHH
Confidence 45555555432 4555666777777777666543332223467777765521 235789999999
Q ss_pred HHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh
Q 015988 188 LSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 188 L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL 234 (397)
|..++........-+...++..+.+.+.++........-|+..|..|
T Consensus 292 l~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 292 LAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99888642222111222334455655554432222244455555443
No 322
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.39 E-value=7e+02 Score=26.37 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=80.5
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHhc-CCCC--chhhh--hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHH
Q 015988 128 IISFLQSPDLNLQEYAAAALLTLSA-SSVN--KPFIS--ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIIL 202 (397)
Q Consensus 128 L~~lL~~~~~~~~~~a~~~L~nLs~-~~~~--~~~i~--~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~ 202 (397)
|.+-|+-.|..+|.+|+..+.++-. .+++ ++.+- -..-...|..+|.++-+.+|..|..-+...... . ..++
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~--f-We~i 255 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK--F-WEMI 255 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH--H-HHHc
Confidence 3444556788999999999998753 2222 22221 123456777889999999988777544443221 1 1111
Q ss_pred hCCChHHHHH----HhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 203 GTNPIPSIVD----LLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 203 ~~g~i~~Lv~----ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
-...+..|+. -+..+ ....++-.....|-.+..++.....+- -+++.|-..|...+..||-.++..|..+=
T Consensus 256 P~~i~~~ll~kI~d~~a~d-t~s~VR~svf~gl~~~l~np~sh~~le---~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFD-TSSDVRCSVFKGLPMILDNPLSHPLLE---QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhc-cchheehhHhcCcHHHHcCccchhHHH---HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 1112222222 22222 223455556666666665555444331 24556666677777888888888887763
No 323
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=28.86 E-value=2.7e+02 Score=27.24 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=52.3
Q ss_pred CccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcCCCh--hHHHHHHHHHHhhh
Q 015988 36 SSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRAPDS--DHESALLALLNLAV 110 (397)
Q Consensus 36 ~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~~~~--~~~~a~~~L~~L~~ 110 (397)
+...+...+..|+.++.|.|+..|...-..|..+-..-...|..++.. ...+.+.+...+. .....++.++.+..
T Consensus 127 ~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 127 KKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIIN 204 (409)
T ss_dssp TTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHh
Confidence 445788899999999999999999999999988887767788888776 5566666654111 24444555555544
No 324
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.16 E-value=63 Score=30.61 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=48.9
Q ss_pred HHHHHHHhhhcChhhHHHHHHcCChHHHHHhh--CCCCHHHHHHHHHHHHHHhcCC-CCchhhh
Q 015988 101 ALLALLNLAVKDEKNKIKIVEAGALEPIISFL--QSPDLNLQEYAAAALLTLSASS-VNKPFIS 161 (397)
Q Consensus 101 a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~ 161 (397)
..+.+.+++..+++++..+.+-||++.++.-- +..+|-+++....++.+|..+. +|+..+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 45688899988999999999999998766533 3457889999999999998866 5777665
No 325
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=27.81 E-value=1.4e+02 Score=25.91 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=45.9
Q ss_pred ccchhhhHHHHHHHhcCC---C---------------HHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-h
Q 015988 37 SSSASSAVHRALHLIQSD---D---------------PDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-D 97 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~---~---------------~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~ 97 (397)
.+...|....++..|+.. . ..+-..+...|..++.++++++..+.+.++.++..+..... .
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l~~~~~~~~~~~ 117 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLDFLISIFMQLQIGY 117 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-----HHCCCH-T
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHHhhccC
Confidence 344556666666666421 1 25567788999999999999999998877766554443111 1
Q ss_pred HHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCC
Q 015988 98 HESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSP 135 (397)
Q Consensus 98 ~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~ 135 (397)
-..+...|..+..++.+....+.+.. +..++.++...
T Consensus 118 ~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~ 154 (207)
T PF01365_consen 118 GLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKH 154 (207)
T ss_dssp THHHHHHHHHHHTT------------------------
T ss_pred CchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHc
Confidence 23456778888887777666665554 88888888763
No 326
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=26.69 E-value=2.7e+02 Score=31.30 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=63.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-CChhHHH-HHHHHHHhhhcChhhHHHHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-PDSDHES-ALLALLNLAVKDEKNKIKIV 120 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~~~~~~~-a~~~L~~L~~~~~~~~~~i~ 120 (397)
..+.+...+++.+..+|..|++++..++.. ..++.....+..++.++.. ....++. +...+..+....... ..=+
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~--~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~-l~~~ 893 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKS--ATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVG-LVPY 893 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccc-cccc
Confidence 344566666788899999999999998865 3444444446666666665 2222333 334444443311100 0000
Q ss_pred HcCChHHHHHhhCCCCHHHHHHHHHHHHHHh
Q 015988 121 EAGALEPIISFLQSPDLNLQEYAAAALLTLS 151 (397)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs 151 (397)
..=.+++|...+......++..+..++..+-
T Consensus 894 ~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 894 NPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred ceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 1224667777777777888888888777764
No 327
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=26.50 E-value=4.1e+02 Score=22.69 Aligned_cols=103 Identities=20% Similarity=0.255 Sum_probs=64.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHH---------------------HhHHHHHHhhcC--CChhHHHHHHHH
Q 015988 49 HLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLA---------------------QAVQPLVLMLRA--PDSDHESALLAL 105 (397)
Q Consensus 49 ~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~---------------------~~v~~Lv~lL~~--~~~~~~~a~~~L 105 (397)
-++...++.+|..|+.++..+.++....-.... +.-..|+..|+. ...+....+++|
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~l 126 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCL 126 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355567889999999999988876522211111 112334444444 222466778888
Q ss_pred HHhhhcChhhHHHHHHcCChHHHH----HhhCCCCHHHHHHHHHHHHHHhcCC
Q 015988 106 LNLAVKDEKNKIKIVEAGALEPII----SFLQSPDLNLQEYAAAALLTLSASS 154 (397)
Q Consensus 106 ~~L~~~~~~~~~~i~~~g~i~~L~----~lL~~~~~~~~~~a~~~L~nLs~~~ 154 (397)
..+....|..|-. .|.++.++ .++.+.|.+++..++.++..+....
T Consensus 127 a~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 127 AVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHccCChhhcC---HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 8888866655543 35544444 4556778888888888888776543
No 328
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=26.46 E-value=4.6e+02 Score=23.26 Aligned_cols=126 Identities=20% Similarity=0.192 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC-------------CHH-----HHHHHHHHHHhhcCCchhHHHH
Q 015988 140 QEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG-------------SQQ-----AKFDAVMALSNLSTHPDNLSII 201 (397)
Q Consensus 140 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~-------------~~~-----~~~~a~~aL~nLs~~~~~~~~i 201 (397)
...++..+..|...++....+.+.+.++.+...|..- +++ .-..=...|..|+..+...+.+
T Consensus 81 ~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~lL 160 (226)
T PF14666_consen 81 VRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLKLL 160 (226)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHHHH
Confidence 3445566666666655555555677777777666432 111 1122234677888888888888
Q ss_pred HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHH-HHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 202 LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLA-VVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 202 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~-Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
-+.+++..+.++.... .+..+. .-+|.+|=-. ..|-... |-..|.+++..+|..|...|..+.+
T Consensus 161 e~~~if~~l~~i~~~~-~~~~l~---klil~~LDY~---------~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 161 ERWNIFTMLYHIFSLS-SRDDLL---KLILSSLDYS---------VDGHPRIILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHCCHHHHHHHHHccC-chHHHH---HHHHhhCCCC---------CccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 8899999999998875 223322 2255555111 1233333 3445778889999999999887653
No 329
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.46 E-value=2.6e+02 Score=22.68 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=53.1
Q ss_pred CCHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCc--hhHHHHHhCCChHH-HHHHhhhcc-cChHHHHHHHHHHHHhcCC
Q 015988 164 GAIPLLVEILRY-GSQQAKFDAVMALSNLSTHP--DNLSIILGTNPIPS-IVDLLIFCK-KSSKTAEKCTSLIESLVGF 237 (397)
Q Consensus 164 g~i~~L~~lL~~-~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~-Lv~ll~~~~-~~~~~~~~a~~~L~nL~~~ 237 (397)
.++..|-+-|.+ .++.++..|+..|..+..+. .....+...+.+.. |++++.... ....+...++.++...+..
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 355666666653 57888888999988888764 44577777888987 999996432 2346788888888877543
No 330
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.44 E-value=1.3e+02 Score=27.81 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc---------------hhHHHHHhCCChHHHHHHhhhc
Q 015988 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP---------------DNLSIILGTNPIPSIVDLLIFC 217 (397)
Q Consensus 162 ~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~---------------~~~~~i~~~g~i~~Lv~ll~~~ 217 (397)
....+..++.-|.+++...+..|+.+|..++.+. .|...+.+.|+++.|+.+|+..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~ 128 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMF 128 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3456778888888888888999999999887541 2455566788888888888753
No 331
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=26.25 E-value=4.9e+02 Score=28.59 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHH-hHHHHHHhhcCCCh--hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHh
Q 015988 55 DPDLKLEAAREIRRLTKTSQRCRRQLAQ-AVQPLVLMLRAPDS--DHESALLALLNLAVKDEKNKIKIVEAGALEPIISF 131 (397)
Q Consensus 55 ~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~v~~Lv~lL~~~~~--~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l 131 (397)
.+.++.++..+|.+++-... .+.+ .+|.|++-|.-.+. ++.+.+-++..+|..- .+.-...||.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHH
Confidence 46788889999999997542 2333 38999988876322 3444444555555421 22334578999999
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCC
Q 015988 132 LQSPDLNLQEYAAAALLTLSASS 154 (397)
Q Consensus 132 L~~~~~~~~~~a~~~L~nLs~~~ 154 (397)
|..+++-++..+.-.|.+|-+.+
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG 1037 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999997654
No 332
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.49 E-value=1.4e+02 Score=21.78 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHH----hcCCHHHHHHHHHHH
Q 015988 120 VEAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEIL----RYGSQQAKFDAVMAL 188 (397)
Q Consensus 120 ~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL----~~~~~~~~~~a~~aL 188 (397)
.+...+.|+..++. ..+.++++..+.++..+...... . ...| .+.++.++ .+++..+...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~--~-i~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE--N-IKSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH--H-HHhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34556778888864 45789999999999998754321 1 1222 44444444 345566666665554
No 333
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=25.34 E-value=61 Score=17.76 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhh
Q 015988 58 LKLEAAREIRRLTK 71 (397)
Q Consensus 58 ~~~~a~~~L~~l~~ 71 (397)
+|..|+++|..+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 45666667666653
No 334
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=24.50 E-value=5.8e+02 Score=23.80 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=52.2
Q ss_pred hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc--chhhhhccCcHHHHHHHHhcCC---HHHHHHHHHHHHHHh
Q 015988 203 GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG--RIVLTSEEGGVLAVVEVLENGS---LQAREHAVGALLMMC 277 (397)
Q Consensus 203 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~~~g~i~~Lv~lL~~~~---~~v~~~a~~~L~~L~ 277 (397)
+.|.+..+++.+...+.+....---..++-.+.++... .+.++.+.|.++.++.-+-++. ..+.......|..|.
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 36788888888876544444333334444444444433 3334448899999999876543 568888999999999
Q ss_pred ccC
Q 015988 278 QSD 280 (397)
Q Consensus 278 ~~~ 280 (397)
..+
T Consensus 173 K~n 175 (303)
T PF12463_consen 173 KFN 175 (303)
T ss_pred CCC
Confidence 987
No 335
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=23.58 E-value=1.2e+02 Score=16.69 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHh
Q 015988 57 DLKLEAAREIRRLT 70 (397)
Q Consensus 57 ~~~~~a~~~L~~l~ 70 (397)
.+|..|+.+|.++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 46778888888773
No 336
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=23.28 E-value=1.3e+02 Score=18.55 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=19.8
Q ss_pred ccchhhhHHHHHHHhcCCCHHHHHHHHHH
Q 015988 37 SSSASSAVHRALHLIQSDDPDLKLEAARE 65 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~~~~~~~a~~~ 65 (397)
.+........+.+.+...++.+|..|+..
T Consensus 13 ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 13 LLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 33444555666777878888888888765
No 337
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.10 E-value=1.4e+02 Score=29.82 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=45.6
Q ss_pred hhCCCCHHHHHHHHHHHHHHhcCCCCchhhh-hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 131 FLQSPDLNLQEYAAAALLTLSASSVNKPFIS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 131 lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
+....+++++..+..++.+++.+.+++.... .+..-..+++++..+.+++-+.+..++..+..
T Consensus 336 ~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 336 LCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3345789999999999999999888877554 34455566677766666666666666666553
No 338
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.36 E-value=3.4e+02 Score=27.86 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=50.5
Q ss_pred CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHH
Q 015988 194 HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAV 270 (397)
Q Consensus 194 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~ 270 (397)
..+.-..+-+.|+...+..+-+-..+...+....+++++|++........+. ..|.+..+-.+.+.++ .+++.+.
T Consensus 280 ~~~lsd~l~~dg~~q~~~~~~e~~rd~~~v~~~l~rvlanms~~~~~~~s~~-~S~W~sl~s~~~t~~d-~l~~~~~ 354 (697)
T KOG2029|consen 280 TFELSDGLWDDGGLQHLAVLQEFDRDGQVVMRALMRVLANMSEDEKLALSDS-RSGWVSLVSEMSTTPD-SLRERAL 354 (697)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHhcCChhhhHHHHHHHHhhhcccccchhhh-hhhhHHHHHHHhcCch-hHHHHHH
Confidence 3333334555676666655555444556788999999999998777777777 7788886666666664 5555543
No 339
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.73 E-value=3.8e+02 Score=20.69 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=46.0
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcC
Q 015988 42 SAVHRALHLIQ-SDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDSDHESALLALLNLAVKD 112 (397)
Q Consensus 42 ~~l~~lv~lL~-s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~ 112 (397)
-.+|.+.+.|. +..++.|..+...+..++...+=....+...+..++.-...... ...++.+|..++...
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~-~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV-QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh-HHHHHHHHHHHHHcc
Confidence 35677888888 77889999999999999987544443333334444444433222 467888888887643
No 340
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.61 E-value=4.6e+02 Score=21.60 Aligned_cols=82 Identities=13% Similarity=-0.017 Sum_probs=50.9
Q ss_pred hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh-CC-ChHHHHH-HhhhcccChHHHHHHHHHHHHhcCCc
Q 015988 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILG-TN-PIPSIVD-LLIFCKKSSKTAEKCTSLIESLVGFD 238 (397)
Q Consensus 162 ~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g-~i~~Lv~-ll~~~~~~~~~~~~a~~~L~nL~~~~ 238 (397)
.....+.+++.+.+.++.+-..++.++..|... .+..+.. .+ .+..+.. ++.+......-+..++.++..++..+
T Consensus 71 k~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 71 KDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 456677777777777788888899888888743 2222221 11 3444444 55554322345677899999988777
Q ss_pred ccchhhh
Q 015988 239 EGRIVLT 245 (397)
Q Consensus 239 ~~~~~~~ 245 (397)
.....+.
T Consensus 149 ~~l~~lf 155 (168)
T PF12783_consen 149 QFLVDLF 155 (168)
T ss_pred hHHHHHH
Confidence 5444433
No 341
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=21.39 E-value=3e+02 Score=20.43 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcCC---ChhHHHHHHHHHHhh
Q 015988 53 SDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRAP---DSDHESALLALLNLA 109 (397)
Q Consensus 53 s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~~---~~~~~~a~~~L~~L~ 109 (397)
.+++.+|..|+..|..++..-......+..- +..+...+.++ -..+.-|+..|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4577999999999999997532332333322 55666666552 224677888888874
No 342
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.27 E-value=1e+03 Score=25.47 Aligned_cols=181 Identities=19% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCch-----
Q 015988 84 VQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKP----- 158 (397)
Q Consensus 84 v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~----- 158 (397)
|..+.-++..+...-..++.+|..+|. ...-|..+..-..+.-|+-----++..++...-+.+..|......+.
T Consensus 214 itA~~LlvqesPvh~lk~lEtLls~c~-KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~W 292 (988)
T KOG2038|consen 214 ITAMTLLVQESPVHNLKSLETLLSSCK-KKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMW 292 (988)
T ss_pred hHHHHHhhcccchhHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHH
Q ss_pred ------hhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHH
Q 015988 159 ------FISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIE 232 (397)
Q Consensus 159 ------~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 232 (397)
+..-..+|+.|..+-++.-++++..++.++++|-.+..-. +..++..||.-+.. ++.++...|.-.|.
T Consensus 293 yfE~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq----E~~LL~~lVNKlGD--pqnKiaskAsylL~ 366 (988)
T KOG2038|consen 293 YFEHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ----ENNLLVLLVNKLGD--PQNKIASKASYLLE 366 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH----HHHHHHHHHHhcCC--cchhhhhhHHHHHH
Q ss_pred HhcCCcccchhhhhccCcHHHHHHHHhcCC--HHHHHHHHHHHHHH
Q 015988 233 SLVGFDEGRIVLTSEEGGVLAVVEVLENGS--LQAREHAVGALLMM 276 (397)
Q Consensus 233 nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~v~~~a~~~L~~L 276 (397)
+|.....+.+.++ +..+..++..++ ...+.+|+..|..+
T Consensus 367 ~L~~~HPnMK~Vv-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 367 GLLAKHPNMKIVV-----IDEIERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred HHHhhCCcceeeh-----HHHHHHHHcccCccccceeehhhhhhhh
No 343
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=21.23 E-value=1.5e+02 Score=22.05 Aligned_cols=59 Identities=14% Similarity=-0.013 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh
Q 015988 176 GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 176 ~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL 234 (397)
+...+|+.|+..|..++........-....++..+.+.+.++........-|+..|..|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 35688999999999888643222112222455667776665543344455555555554
No 344
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.19 E-value=3.4e+02 Score=20.74 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=44.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--hhHHHHHhCCChHHHHHHhhh----cccChHHHHHHHHHHHH
Q 015988 165 AIPLLVEILRYGSQQAKFDAVMALSNLSTHP--DNLSIILGTNPIPSIVDLLIF----CKKSSKTAEKCTSLIES 233 (397)
Q Consensus 165 ~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~n 233 (397)
++..|..-|.+.++.++..|+..|..+..+. .....+.....+..++++... ...+..++..+..++..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 5666666777889999999999999998863 344566666555555543111 12235566777666654
No 345
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.12 E-value=2.2e+02 Score=23.59 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=50.3
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh-h-cCCHHHHHH-HHhcCC--HHHHHHHHHHHHhhcC
Q 015988 119 IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS-A-SGAIPLLVE-ILRYGS--QQAKFDAVMALSNLST 193 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~-~g~i~~L~~-lL~~~~--~~~~~~a~~aL~nLs~ 193 (397)
+++....+.|.+.+.+.++.+-..++++++.+... .+..+. + .-.+..++. ++.+.+ ...|..++.++..++.
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 33455566677777666788888889988888742 222222 2 223444444 565543 4677889999999998
Q ss_pred CchhH
Q 015988 194 HPDNL 198 (397)
Q Consensus 194 ~~~~~ 198 (397)
++...
T Consensus 147 ~p~~l 151 (168)
T PF12783_consen 147 DPQFL 151 (168)
T ss_pred ChhHH
Confidence 87654
No 346
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=21.06 E-value=8.6e+02 Score=24.47 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=92.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhC-----------CCCHHHHHHHHHHHHHHhcC
Q 015988 85 QPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQ-----------SPDLNLQEYAAAALLTLSAS 153 (397)
Q Consensus 85 ~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~-----------~~~~~~~~~a~~~L~nLs~~ 153 (397)
+.++..-+..+.+...|-..|..+... +-+...+..|..+.. ..++.+|...+..|+.-..-
T Consensus 241 ~~liAsad~~~~V~~~ae~~LKr~~~~-------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A 313 (501)
T PF13001_consen 241 PLLIASADSNSSVSDRAEDLLKRLSVS-------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA 313 (501)
T ss_pred heeeEEeCCcchHHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH
Confidence 334433333333466677777777653 112334455555444 23566777766666553210
Q ss_pred CCCchhhhhcCCHHHHHHHHhcC--CHHHHHHHHHHH---HhhcCC-chhH-HHH---HhCCChHHHHHHh---hhcccC
Q 015988 154 SVNKPFISASGAIPLLVEILRYG--SQQAKFDAVMAL---SNLSTH-PDNL-SII---LGTNPIPSIVDLL---IFCKKS 220 (397)
Q Consensus 154 ~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~aL---~nLs~~-~~~~-~~i---~~~g~i~~Lv~ll---~~~~~~ 220 (397)
.. .-+..+..+..-|.+. +...+..++..+ ...... .... ..+ +..++.+.+ +.- ....+.
T Consensus 314 a~-----~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~ 387 (501)
T PF13001_consen 314 AT-----SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSED 387 (501)
T ss_pred Hh-----CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCccc
Confidence 00 0112222222223333 445555565555 333322 2221 222 224444444 110 111234
Q ss_pred hHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 221 SKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 221 ~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
...+..+..+|+.|+......- ..+.+.+..|++-|...+++++-.+-.+|..++..
T Consensus 388 ~~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 388 IELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 5677788888888876555431 12456788888888878888888888888877653
No 347
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.87 E-value=1.7e+02 Score=29.11 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=51.5
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCch--hHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHH
Q 015988 164 GAIPLLVEILRYGSQQAKFDAVMALSNLSTHPD--NLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIE 232 (397)
Q Consensus 164 g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 232 (397)
.++..|.+-+.+.++.++..|+..|--+..+.. ....+.+.+++..+|...+......++++.++.+|.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 355566666777778888889988887777633 346778888999999988886445678888888775
No 348
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.63 E-value=9.4e+02 Score=24.79 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=63.4
Q ss_pred CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhccCch
Q 015988 204 TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE-NGSLQAREHAVGALLMMCQSDRC 282 (397)
Q Consensus 204 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~L~~~~~~ 282 (397)
.|++..|++.--++ .+.+++++|..+|.-+|..+ ...+...+++|. +.++.+|...+-+|.-.|.+...
T Consensus 550 ~~vv~~lLh~avsD-~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 550 LGVVSTLLHYAVSD-GNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred chhHhhhheeeccc-CchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 34566666652222 23467777777777554433 345556667765 45688888888888888877532
Q ss_pred hhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 283 KYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 283 ~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
.. ++..|-.++.+.++-+|+.|.-++..+
T Consensus 620 ~~--------a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 620 KV--------ATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred HH--------HHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 21 345556677778889999988777666
No 349
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.42 E-value=1.4e+03 Score=26.72 Aligned_cols=118 Identities=8% Similarity=0.016 Sum_probs=74.0
Q ss_pred hhhhcCCHHHHHHHHhcCCHH---HHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 159 FISASGAIPLLVEILRYGSQQ---AKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 159 ~i~~~g~i~~L~~lL~~~~~~---~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
.+++-.++|.+-+++.+..++ .|+.....+..--..+...+.....+.+..++....+..-+.....-.+.+|.+-+
T Consensus 1535 ~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~V 1614 (1758)
T KOG1791|consen 1535 KIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGV 1614 (1758)
T ss_pred hhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcC
Confidence 345566777777888765433 45555555555555555566666677788888877775333333345567777777
Q ss_pred CCcccchhhhhccCcHHHHHHHHhcCC--HHHHHH-HHHHHHHH
Q 015988 236 GFDEGRIVLTSEEGGVLAVVEVLENGS--LQAREH-AVGALLMM 276 (397)
Q Consensus 236 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~v~~~-a~~~L~~L 276 (397)
..+.....++...|...-+..++.++- +...+. -..++.++
T Consensus 1615 k~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1615 KFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred CCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 777777777767788788888887643 444444 34444444
No 350
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=20.41 E-value=1e+03 Score=28.41 Aligned_cols=155 Identities=10% Similarity=0.009 Sum_probs=89.6
Q ss_pred chhhhhcCCHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCchhHHHHHh----CCChHHHHHHhhhcccChHHHHHHH
Q 015988 157 KPFISASGAIPLLVEILR----YGSQQAKFDAVMALSNLSTHPDNLSIILG----TNPIPSIVDLLIFCKKSSKTAEKCT 228 (397)
Q Consensus 157 ~~~i~~~g~i~~L~~lL~----~~~~~~~~~a~~aL~nLs~~~~~~~~i~~----~g~i~~Lv~ll~~~~~~~~~~~~a~ 228 (397)
|..+.+......+...+. +.+..+...|+..|+-|+..--.++.+.. ...+.++..++... ....+.+..+
T Consensus 1126 Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s-~~~eVrE~IL 1204 (1780)
T PLN03076 1126 RIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKS-NAVEIRELII 1204 (1780)
T ss_pred chheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhc-CchHHHHHHH
Confidence 334444444444444332 23567778888888888764222333221 34677788777754 3467889999
Q ss_pred HHHHHhcCCcccchhhhhccCcHHHHHHHHh----cCCHHHHHHHHHHHHHHhccCchhh----HHHHHHcCChHHHHHH
Q 015988 229 SLIESLVGFDEGRIVLTSEEGGVLAVVEVLE----NGSLQAREHAVGALLMMCQSDRCKY----REPILREGVIPGLLEL 300 (397)
Q Consensus 229 ~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~----~~~~~v~~~a~~~L~~L~~~~~~~~----r~~i~~~g~v~~L~~l 300 (397)
.++.++...... -+ .. |.+.++.++. ..++.+.+.|...+..++...-... ...+ ...|..|.++
T Consensus 1205 eCv~qmI~s~~~---nI-kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~F 1277 (1780)
T PLN03076 1205 RCVSQMVLSRVN---NV-KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAF 1277 (1780)
T ss_pred HHHHHHHHHHHh---hh-hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHH
Confidence 999887543322 11 22 4455555554 4568888999999988875421000 0111 2345555555
Q ss_pred hhcC-CHHHHHHHHHHHHHh
Q 015988 301 TIQG-TPKSQTKARTLLQLL 319 (397)
Q Consensus 301 l~~~-~~~~~~~A~~~L~~l 319 (397)
.... +..+--.|...|+.+
T Consensus 1278 a~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1278 TNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HhCcCcccccHHHHHHHHHH
Confidence 5433 366777888888876
Done!