Query 015988
Match_columns 397
No_of_seqs 214 out of 2207
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 05:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l6x_A Catenin delta-1; cateni 100.0 1.1E-33 3.9E-38 281.0 30.2 327 38-366 44-435 (584)
2 1xm9_A Plakophilin 1; armadill 100.0 1.7E-33 5.8E-38 276.8 28.2 321 43-365 3-408 (457)
3 3nmz_A APC variant protein; pr 100.0 4E-34 1.4E-38 278.3 19.5 323 37-365 65-452 (458)
4 3ul1_B Importin subunit alpha- 100.0 2.4E-31 8.3E-36 265.2 28.9 323 37-365 95-432 (510)
5 3tpo_A Importin subunit alpha- 100.0 1.1E-30 3.8E-35 261.6 31.0 323 37-365 114-451 (529)
6 3ul1_B Importin subunit alpha- 100.0 3.5E-31 1.2E-35 264.0 25.6 328 42-375 57-399 (510)
7 3now_A UNC-45 protein, SD10334 100.0 2.4E-31 8.1E-36 272.8 24.2 322 40-366 419-785 (810)
8 3nmw_A APC variant protein; AR 100.0 1.8E-31 6.3E-36 252.3 21.4 265 57-324 47-337 (354)
9 3now_A UNC-45 protein, SD10334 100.0 1.9E-30 6.5E-35 266.1 24.8 323 43-374 378-747 (810)
10 3nmz_A APC variant protein; pr 100.0 1.1E-30 3.8E-35 254.1 21.5 260 61-323 167-452 (458)
11 3tpo_A Importin subunit alpha- 100.0 1.1E-29 3.7E-34 254.5 28.5 328 42-375 76-418 (529)
12 4b8j_A Importin subunit alpha- 100.0 1.3E-28 4.3E-33 246.7 35.5 324 37-366 112-446 (528)
13 1xm9_A Plakophilin 1; armadill 100.0 7.6E-30 2.6E-34 250.8 24.5 318 37-363 39-449 (457)
14 3l6x_A Catenin delta-1; cateni 100.0 1.2E-29 4.3E-34 252.1 24.9 339 36-385 84-494 (584)
15 4b8j_A Importin subunit alpha- 100.0 8.8E-29 3E-33 247.8 29.4 328 41-374 73-411 (528)
16 3nmw_A APC variant protein; AR 100.0 1.6E-30 5.4E-35 245.9 14.6 264 98-367 49-338 (354)
17 1wa5_B Importin alpha subunit; 100.0 5.5E-28 1.9E-32 242.2 31.6 323 38-366 126-460 (530)
18 2jdq_A Importin alpha-1 subuni 100.0 4.2E-27 1.4E-31 230.3 33.2 321 39-366 60-393 (450)
19 1wa5_B Importin alpha subunit; 100.0 1.7E-27 5.7E-32 238.7 28.3 319 40-365 85-414 (530)
20 2jdq_A Importin alpha-1 subuni 100.0 2.3E-26 7.7E-31 225.1 28.1 314 43-364 21-348 (450)
21 1jdh_A Beta-catenin; beta-cate 100.0 4.8E-27 1.6E-31 234.8 23.7 319 37-364 12-340 (529)
22 4hxt_A De novo protein OR329; 100.0 1E-26 3.5E-31 209.6 23.0 238 84-324 4-244 (252)
23 2z6h_A Catenin beta-1, beta-ca 99.9 1.7E-26 5.9E-31 236.7 24.6 318 37-363 9-336 (644)
24 4hxt_A De novo protein OR329; 99.9 7.6E-26 2.6E-30 203.8 23.8 238 42-281 2-244 (252)
25 4db8_A Armadillo-repeat protei 99.9 1.6E-26 5.3E-31 208.9 19.2 235 84-321 14-251 (252)
26 1jdh_A Beta-catenin; beta-cate 99.9 1.8E-25 6.2E-30 223.3 28.5 316 40-363 57-385 (529)
27 4db8_A Armadillo-repeat protei 99.9 4E-26 1.4E-30 206.2 20.9 236 40-278 10-251 (252)
28 2z6h_A Catenin beta-1, beta-ca 99.9 3.1E-25 1.1E-29 227.3 29.3 321 37-363 93-486 (644)
29 2z6g_A B-catenin; FULL-length, 99.9 2.4E-24 8.3E-29 224.7 27.8 321 37-363 229-622 (780)
30 2z6g_A B-catenin; FULL-length, 99.9 4.9E-25 1.7E-29 230.0 22.1 316 40-364 148-473 (780)
31 3tt9_A Plakophilin-2; cell adh 99.9 9E-25 3.1E-29 193.1 14.7 195 84-279 10-230 (233)
32 3tt9_A Plakophilin-2; cell adh 99.9 2.7E-24 9.2E-29 190.1 17.4 195 42-237 8-230 (233)
33 4db6_A Armadillo repeat protei 99.9 4.6E-23 1.6E-27 180.9 19.4 198 121-321 10-209 (210)
34 3opb_A SWI5-dependent HO expre 99.9 1.3E-22 4.3E-27 204.7 21.8 320 41-363 333-728 (778)
35 4db6_A Armadillo repeat protei 99.9 1.6E-21 5.5E-26 171.0 21.6 196 39-236 9-209 (210)
36 3opb_A SWI5-dependent HO expre 99.9 7.1E-21 2.4E-25 192.0 24.0 319 39-363 293-683 (778)
37 1xqr_A HSPBP1 protein; armadil 99.9 2E-20 6.8E-25 172.2 18.2 222 138-362 55-286 (296)
38 1xqr_A HSPBP1 protein; armadil 99.9 3.6E-20 1.2E-24 170.5 19.7 220 98-322 57-288 (296)
39 3grl_A General vesicular trans 99.6 1.5E-14 5.2E-19 142.6 20.9 335 37-375 16-406 (651)
40 3grl_A General vesicular trans 99.6 2.5E-13 8.6E-18 134.0 27.0 288 32-321 50-394 (651)
41 1oyz_A Hypothetical protein YI 99.4 4.3E-11 1.5E-15 109.2 22.8 228 40-321 21-250 (280)
42 4fdd_A Transportin-1; heat rep 99.3 2.9E-11 1E-15 127.5 19.1 312 41-364 127-472 (852)
43 3ltj_A Alpharep-4; protein eng 99.3 3E-10 1E-14 98.2 21.0 187 38-277 10-197 (201)
44 3ltm_A Alpha-REP4; protein eng 99.3 2.8E-10 9.5E-15 99.2 19.9 189 39-280 16-205 (211)
45 3ltm_A Alpha-REP4; protein eng 99.3 3.8E-10 1.3E-14 98.3 18.9 185 84-324 21-206 (211)
46 3ltj_A Alpharep-4; protein eng 99.2 1.7E-09 5.8E-14 93.4 19.3 181 84-320 16-197 (201)
47 1oyz_A Hypothetical protein YI 99.2 3.1E-09 1.1E-13 96.8 21.9 224 40-317 52-278 (280)
48 4fdd_A Transportin-1; heat rep 99.2 1.6E-09 5.3E-14 114.3 21.3 332 41-375 358-757 (852)
49 1b3u_A Protein (protein phosph 99.1 2.3E-09 7.8E-14 107.7 20.3 305 41-364 163-471 (588)
50 4gmo_A Putative uncharacterize 99.1 2.5E-10 8.5E-15 117.2 11.3 197 122-320 33-257 (684)
51 1ibr_B P95, importin beta-1 su 99.1 3.1E-09 1.1E-13 103.4 17.6 293 41-341 127-456 (462)
52 2vgl_B AP-2 complex subunit be 99.1 1.3E-08 4.5E-13 102.8 21.6 265 84-365 123-421 (591)
53 1b3u_A Protein (protein phosph 99.1 1E-08 3.5E-13 102.9 20.3 265 41-320 86-352 (588)
54 2vgl_B AP-2 complex subunit be 99.0 8.3E-08 2.8E-12 96.9 24.2 255 40-318 119-416 (591)
55 2bpt_A Importin beta-1 subunit 98.9 7.9E-08 2.7E-12 101.0 21.6 311 43-364 370-712 (861)
56 1qgr_A Protein (importin beta 98.9 3.1E-07 1E-11 96.7 25.4 316 41-365 127-481 (876)
57 4gmo_A Putative uncharacterize 98.9 6E-09 2.1E-13 106.9 11.8 191 40-234 32-256 (684)
58 1w63_A Adapter-related protein 98.8 2.6E-07 8.8E-12 93.8 21.1 256 42-324 107-382 (618)
59 1qgr_A Protein (importin beta 98.8 5.2E-07 1.8E-11 94.9 21.1 272 42-322 172-480 (876)
60 2bpt_A Importin beta-1 subunit 98.7 1.6E-06 5.6E-11 90.9 22.9 312 42-364 134-483 (861)
61 3b2a_A TON_1937, putative unch 98.7 1.3E-06 4.6E-11 74.8 17.5 187 40-238 31-220 (265)
62 1w63_A Adapter-related protein 98.7 1E-06 3.4E-11 89.4 19.4 252 41-321 141-414 (618)
63 1ibr_B P95, importin beta-1 su 98.7 3.4E-06 1.2E-10 81.7 22.2 312 41-365 34-439 (462)
64 1u6g_C TIP120 protein, CAND1; 98.6 7.3E-07 2.5E-11 97.6 18.2 232 39-280 45-286 (1230)
65 1ho8_A Vacuolar ATP synthase s 98.6 2.6E-06 9E-11 81.4 19.4 263 53-319 136-474 (480)
66 2vgl_A Adaptor protein complex 98.5 1.3E-05 4.5E-10 81.1 22.9 256 44-323 113-400 (621)
67 3b2a_A TON_1937, putative unch 98.4 1.8E-05 6.2E-10 67.9 16.6 219 84-319 35-259 (265)
68 1u6g_C TIP120 protein, CAND1; 98.3 3.6E-06 1.2E-10 92.1 12.3 266 42-322 6-285 (1230)
69 2vgl_A Adaptor protein complex 98.3 8.2E-05 2.8E-09 75.3 21.0 257 41-323 328-591 (621)
70 2qk2_A LP04448P; mini spindles 98.2 6.6E-06 2.2E-10 72.9 10.9 181 45-235 18-204 (242)
71 2qk2_A LP04448P; mini spindles 98.1 2.8E-05 9.6E-10 68.8 13.1 181 127-321 19-205 (242)
72 1te4_A Conserved protein MTH18 98.1 2.9E-07 9.9E-12 73.6 -0.9 120 41-191 11-131 (131)
73 3dad_A FH1/FH2 domain-containi 98.0 0.00013 4.3E-09 66.6 14.1 151 166-319 120-284 (339)
74 2db0_A 253AA long hypothetical 97.9 0.0051 1.7E-07 50.9 21.1 209 84-320 34-245 (253)
75 1te4_A Conserved protein MTH18 97.9 1.6E-06 5.5E-11 69.2 0.4 120 122-275 11-130 (131)
76 3tjz_B Coatomer subunit gamma; 97.9 0.00035 1.2E-08 65.1 15.1 245 44-321 70-316 (355)
77 2db0_A 253AA long hypothetical 97.8 0.0045 1.6E-07 51.1 19.4 216 40-279 30-247 (253)
78 3dad_A FH1/FH2 domain-containi 97.8 0.0004 1.4E-08 63.3 14.7 183 127-311 122-326 (339)
79 1ho8_A Vacuolar ATP synthase s 97.8 0.0044 1.5E-07 59.3 21.8 315 41-363 76-476 (480)
80 2qk1_A Protein STU2; STU2P, XM 97.8 0.00013 4.5E-09 64.8 10.7 186 46-235 20-219 (249)
81 2qk1_A Protein STU2; STU2P, XM 97.8 0.00025 8.6E-09 63.0 12.3 187 128-320 21-219 (249)
82 3tjz_B Coatomer subunit gamma; 97.7 0.00023 7.8E-09 66.3 11.9 241 42-316 104-348 (355)
83 4ady_A RPN2, 26S proteasome re 97.6 0.0098 3.4E-07 61.9 22.1 236 43-322 430-677 (963)
84 2iw3_A Elongation factor 3A; a 97.5 0.0098 3.3E-07 62.5 21.4 260 41-319 53-322 (986)
85 4ady_A RPN2, 26S proteasome re 97.3 0.12 4.2E-06 53.8 26.4 240 42-319 472-717 (963)
86 2iw3_A Elongation factor 3A; a 97.2 0.023 7.8E-07 59.7 20.0 275 44-337 16-299 (986)
87 3oc3_A Helicase MOT1, MOT1; re 96.8 0.015 5E-07 56.5 12.9 241 43-317 175-432 (800)
88 2fv2_A RCD1 required for cell 96.7 0.065 2.2E-06 46.7 15.2 223 88-319 9-266 (268)
89 2fv2_A RCD1 required for cell 96.4 0.28 9.6E-06 42.8 16.7 224 45-276 6-266 (268)
90 4ffb_C Protein STU2; tubulin f 96.3 0.042 1.4E-06 49.2 12.1 181 47-235 14-211 (278)
91 1wa5_C Importin alpha RE-expor 96.2 0.46 1.6E-05 50.3 21.5 255 57-320 376-669 (960)
92 1upk_A MO25 protein; transfera 96.0 0.3 1E-05 44.4 16.0 196 40-239 76-286 (341)
93 1wa5_C Importin alpha RE-expor 95.7 0.63 2.1E-05 49.3 19.6 215 53-277 416-669 (960)
94 2x19_B Importin-13; nuclear tr 95.5 1 3.4E-05 47.6 20.3 298 52-365 499-848 (963)
95 3ebb_A Phospholipase A2-activa 95.5 0.066 2.2E-06 48.6 9.5 160 84-245 105-272 (304)
96 2x1g_F Cadmus; transport prote 95.3 1 3.5E-05 47.6 19.9 298 54-365 518-860 (971)
97 2of3_A ZYG-9; multifunctional 94.9 0.29 9.9E-06 43.3 11.8 175 97-286 62-244 (266)
98 2f31_A Diaphanous protein homo 94.5 0.1 3.5E-06 45.4 7.6 139 204-342 42-208 (233)
99 3ebb_A Phospholipase A2-activa 94.3 0.93 3.2E-05 41.0 13.9 134 97-232 164-301 (304)
100 2x1g_F Cadmus; transport prote 94.0 6.5 0.00022 41.4 21.9 133 176-321 476-615 (971)
101 2of3_A ZYG-9; multifunctional 94.0 2.5 8.6E-05 37.3 15.5 175 46-234 50-234 (266)
102 4ffb_C Protein STU2; tubulin f 93.9 0.73 2.5E-05 40.9 12.4 184 128-320 14-211 (278)
103 2x19_B Importin-13; nuclear tr 93.8 7.8 0.00027 40.7 22.4 221 42-280 24-270 (963)
104 4hat_C Exportin-1; heat repeat 93.7 2.2 7.7E-05 45.4 17.4 137 54-194 465-619 (1023)
105 3oc3_A Helicase MOT1, MOT1; re 93.6 0.074 2.5E-06 51.7 5.3 252 85-372 177-448 (800)
106 3c2g_A SYS-1 protein; beta-cat 93.6 3.6 0.00012 37.6 15.7 127 188-319 266-401 (619)
107 3eg5_B Protein diaphanous homo 93.5 0.27 9.3E-06 46.1 9.1 143 199-342 104-274 (383)
108 3u0r_A Apoptosis inhibitor 5; 92.9 1.9 6.4E-05 41.2 13.6 123 134-277 39-162 (507)
109 2bnx_A Diaphanous protein homo 92.7 0.39 1.3E-05 45.1 8.8 138 205-342 47-212 (386)
110 1lrv_A LRV, leucine-rich repea 92.0 0.1 3.5E-06 45.8 3.6 104 49-187 57-169 (244)
111 3c2g_A SYS-1 protein; beta-cat 91.7 2.1 7.2E-05 39.1 11.6 128 147-276 266-401 (619)
112 2f31_A Diaphanous protein homo 91.6 1.9 6.6E-05 37.2 11.3 147 163-311 42-218 (233)
113 3eg5_B Protein diaphanous homo 91.2 2.8 9.4E-05 39.2 12.8 144 163-308 108-281 (383)
114 3gjx_A Exportin-1; transport, 91.1 8.7 0.0003 41.0 17.8 222 39-280 25-277 (1073)
115 1upk_A MO25 protein; transfera 91.0 8.9 0.0003 34.8 19.7 204 118-324 73-286 (341)
116 1lrv_A LRV, leucine-rich repea 89.5 0.25 8.5E-06 43.3 3.7 58 256-314 177-239 (244)
117 3m1i_C Exportin-1; heat repeat 89.3 8.5 0.00029 41.0 16.3 223 40-279 14-264 (1049)
118 3u0r_A Apoptosis inhibitor 5; 88.8 5.5 0.00019 38.1 12.4 128 44-189 31-159 (507)
119 4hat_C Exportin-1; heat repeat 88.0 1.4 4.9E-05 46.9 9.0 140 176-322 465-619 (1023)
120 3l9t_A Putative uncharacterize 87.9 5.2 0.00018 34.4 10.8 96 97-203 120-218 (240)
121 3ibv_A Exportin-T; karyopherin 87.8 15 0.00053 38.8 16.7 314 43-367 491-874 (980)
122 2bnx_A Diaphanous protein homo 87.4 6 0.00021 36.9 12.0 133 177-311 71-222 (386)
123 3ldz_A STAM-1, signal transduc 86.0 1.6 5.4E-05 34.5 6.1 72 250-321 43-114 (140)
124 1x5b_A Signal transducing adap 85.3 2 6.7E-05 34.9 6.5 72 250-321 53-125 (163)
125 3qml_C Protein SLS1, nucleotid 83.5 18 0.00061 32.4 12.2 149 208-363 25-189 (315)
126 1mhq_A ADP-ribosylation factor 82.7 2.1 7.3E-05 34.1 5.5 72 250-321 39-116 (148)
127 3g2s_A C-terminal fragment of 82.6 2.9 0.0001 33.3 6.3 72 250-321 49-126 (149)
128 1juq_A ADP-ribosylation factor 81.9 2.6 8.9E-05 34.5 5.9 72 250-321 51-128 (171)
129 3ibv_A Exportin-T; karyopherin 81.5 57 0.002 34.4 18.9 211 55-280 21-262 (980)
130 3qml_C Protein SLS1, nucleotid 81.5 29 0.001 31.0 14.4 148 166-320 24-188 (315)
131 1lsh_A Lipovitellin (LV-1N, LV 80.4 65 0.0022 34.3 22.7 132 125-275 393-540 (1056)
132 1lsh_A Lipovitellin (LV-1N, LV 78.3 26 0.00089 37.4 13.8 127 129-282 446-580 (1056)
133 3a6p_A Exportin-5; exportin-5, 78.3 31 0.001 37.4 14.5 220 44-280 13-278 (1204)
134 3m1i_C Exportin-1; heat repeat 76.9 12 0.00041 39.9 10.7 101 176-279 465-570 (1049)
135 3gae_A Protein DOA1; UFD3, CDC 75.3 6.2 0.00021 34.4 6.7 150 84-245 58-226 (253)
136 3zyq_A Hepatocyte growth facto 72.9 5.2 0.00018 34.3 5.5 72 250-321 46-118 (226)
137 1dvp_A HRS, hepatocyte growth 71.4 6.7 0.00023 33.4 5.9 72 250-321 43-115 (220)
138 1vdy_A Hypothetical protein (R 70.2 7 0.00024 30.7 5.1 74 250-323 50-132 (140)
139 3a6p_A Exportin-5; exportin-5, 68.4 1.4E+02 0.0046 32.4 19.0 256 52-322 57-381 (1204)
140 3gjx_A Exportin-1; transport, 65.8 1.4E+02 0.0049 31.7 17.5 103 55-161 492-602 (1073)
141 1elk_A Target of MYB1; superhe 63.9 14 0.00048 29.5 5.9 72 250-321 54-130 (157)
142 3gae_A Protein DOA1; UFD3, CDC 61.4 33 0.0011 29.8 8.3 103 175-280 101-219 (253)
143 3gs3_A Symplekin, LD45768P; he 59.8 87 0.003 27.2 19.2 142 42-191 15-171 (257)
144 3l9t_A Putative uncharacterize 58.3 88 0.003 26.8 11.5 139 128-289 76-218 (240)
145 3ldz_A STAM-1, signal transduc 57.8 12 0.00042 29.2 4.5 70 124-193 43-114 (140)
146 3vld_A DNA mismatch repair pro 52.8 1.4E+02 0.0047 28.6 11.4 131 136-276 92-223 (500)
147 1x5b_A Signal transducing adap 52.4 18 0.00062 29.1 4.8 69 125-193 54-125 (163)
148 3o2t_A Symplekin; heat repeat, 51.5 1.5E+02 0.0051 27.4 12.4 105 40-150 61-181 (386)
149 3g2s_A C-terminal fragment of 50.8 20 0.00068 28.4 4.7 70 124-193 49-126 (149)
150 1mhq_A ADP-ribosylation factor 47.7 19 0.00064 28.5 4.1 72 164-235 38-115 (148)
151 3zyq_A Hepatocyte growth facto 47.5 27 0.00094 29.7 5.4 91 164-259 45-137 (226)
152 1juq_A ADP-ribosylation factor 47.3 22 0.00076 28.8 4.5 72 164-235 50-127 (171)
153 3pst_A Protein DOA1; protein d 46.0 1.8E+02 0.0063 27.2 11.1 104 174-280 272-391 (425)
154 3o2t_A Symplekin; heat repeat, 43.0 2E+02 0.007 26.5 14.6 65 122-190 62-126 (386)
155 1dvp_A HRS, hepatocyte growth 38.7 33 0.0011 29.0 4.5 71 164-235 42-114 (220)
156 2xpp_A IWS1, ECU08_0440; trans 35.2 1.6E+02 0.0055 23.0 9.9 78 153-233 50-133 (145)
157 1vsy_5 Proteasome activator BL 34.3 1.5E+02 0.0052 31.3 9.5 222 38-279 129-366 (997)
158 3l3f_X Protein DOA1, DOA1/UFD3 33.6 2.2E+02 0.0077 25.9 9.4 104 174-280 209-328 (362)
159 1elk_A Target of MYB1; superhe 26.8 71 0.0024 25.3 4.3 73 164-236 53-130 (157)
160 4atg_A TAF6; transcription, TF 26.4 1.4E+02 0.0046 24.7 6.1 111 124-234 41-160 (196)
161 3pst_A Protein DOA1; protein d 24.1 1.3E+02 0.0044 28.3 6.1 95 97-195 278-391 (425)
162 3rru_A TOM1L1 protein; structu 23.0 69 0.0024 25.3 3.5 73 250-322 54-131 (152)
163 3vld_A DNA mismatch repair pro 21.3 5.4E+02 0.018 24.5 11.6 106 101-213 96-204 (500)
164 3nfq_A Transcription factor IW 20.2 3.4E+02 0.012 21.7 9.5 79 155-236 67-151 (170)
No 1
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-33 Score=281.03 Aligned_cols=327 Identities=17% Similarity=0.214 Sum_probs=271.2
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCC-hhHHHHHHHHHHhhhc-Ch
Q 015988 38 SSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPD-SDHESALLALLNLAVK-DE 113 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~-~~ 113 (397)
....+.++.+|++|.++++.+|..|+++|.+++..++++|..+.+. ||.||++|++++ .+++.|+++|.||+.+ ++
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 3467789999999999999999999999999999888999988875 999999999944 3799999999999985 68
Q ss_pred hhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh------------------
Q 015988 114 KNKIKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR------------------ 174 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~------------------ 174 (397)
++|..|++.|+|++|+.+|++ .+.++++.++.+||||+.++++|..|++ ++++.|++++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 999999999999999999997 5788999999999999999899999985 57999999872
Q ss_pred cCCHHHHHHHHHHHHhhcCCch-hHHHHHh-CCChHHHHHHhhhc----ccChHHHHHHHHHHHHhcCCc----------
Q 015988 175 YGSQQAKFDAVMALSNLSTHPD-NLSIILG-TNPIPSIVDLLIFC----KKSSKTAEKCTSLIESLVGFD---------- 238 (397)
Q Consensus 175 ~~~~~~~~~a~~aL~nLs~~~~-~~~~i~~-~g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~nL~~~~---------- 238 (397)
..+++++++|+++|+||+...+ +++.+++ .|+++.|++++++. ..+.+.++.|+++|+||+...
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 2357999999999999999764 5888888 46678999999863 234678999999999998652
Q ss_pred ----------------ccchhhhhccCcHHHHHHHHh-cCCHHHHHHHHHHHHHHhccCc---hhhHHHHHHcCChHHHH
Q 015988 239 ----------------EGRIVLTSEEGGVLAVVEVLE-NGSLQAREHAVGALLMMCQSDR---CKYREPILREGVIPGLL 298 (397)
Q Consensus 239 ----------------~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~L~~~~~---~~~r~~i~~~g~v~~L~ 298 (397)
.+...++ +.++++.|+.+|. +.++.+++.|+++|.|||.+.. ...+..+.+.|++|.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~-~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLF-QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp -------------CCCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHh-cccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 1222223 4566888999996 4579999999999999998652 13455556689999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCcc-----chhh-HHHHHHHHHHHHHhH
Q 015988 299 ELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDG-----DEQS-GKAKKMLAEMVQVSM 366 (397)
Q Consensus 299 ~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~-~~A~~~L~~l~~~~~ 366 (397)
++|.++++.+++.|+++|++|+.++..+..+..++++.++..|...... .+.. ..|+..|.+|+..+.
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~ 435 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999998888888889999999766432111 2233 778899999987654
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.7e-33 Score=276.85 Aligned_cols=321 Identities=19% Similarity=0.252 Sum_probs=266.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
.++.++++|+++++.+|..|+.+|.+++.+++..+..+.+. ||.|+++|++++ .++..|+++|.+++.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 47899999999999999999999999998877778666664 999999999844 379999999999999779999999
Q ss_pred HHcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh--------cC--------CHHHHH
Q 015988 120 VEAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR--------YG--------SQQAKF 182 (397)
Q Consensus 120 ~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~--------~~--------~~~~~~ 182 (397)
++.|++++|+++|+ ++++++++.++++|+||+.++++|..+.+ |+++.|+.+|. ++ ++++..
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999889999999 99999999993 22 456677
Q ss_pred HHHHHHHhhcCCchhHHHHHhC-CChHHHHHHhhhc----ccChHHHHHHHHHHHHhcCC--------------------
Q 015988 183 DAVMALSNLSTHPDNLSIILGT-NPIPSIVDLLIFC----KKSSKTAEKCTSLIESLVGF-------------------- 237 (397)
Q Consensus 183 ~a~~aL~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~nL~~~-------------------- 237 (397)
+|+++|+||+.+++++..+.+. |+++.|+.+++++ ..+.+.++.|+.+|+||+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998899999997 9999999999862 12345778999999998621
Q ss_pred -------------------------------cccchhhhhccCcHHHHHHHHhcC-CHHHHHHHHHHHHHHhccCch---
Q 015988 238 -------------------------------DEGRIVLTSEEGGVLAVVEVLENG-SLQAREHAVGALLMMCQSDRC--- 282 (397)
Q Consensus 238 -------------------------------~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~L~~~~~~--- 282 (397)
+++...++ +.|+++.|+.+|.+. ++.+++.|+++|.|||.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 12333344 778899999999864 699999999999999986532
Q ss_pred hh-HHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCcc---chhh-HHHHHH
Q 015988 283 KY-REPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDG---DEQS-GKAKKM 357 (397)
Q Consensus 283 ~~-r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~-~~A~~~ 357 (397)
.. |..+.+.|++|.|++++.+++..+++.|+++|++++.++..+..+..+++++++..|...... ++.. ..|...
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 22 334446899999999999999999999999999999988777778889999998766432111 1223 577788
Q ss_pred HHHHHHHh
Q 015988 358 LAEMVQVS 365 (397)
Q Consensus 358 L~~l~~~~ 365 (397)
|.++....
T Consensus 401 l~ni~~~~ 408 (457)
T 1xm9_A 401 VRNLMASQ 408 (457)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 88887544
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=278.29 Aligned_cols=323 Identities=18% Similarity=0.203 Sum_probs=265.2
Q ss_pred ccchhhhHHHHHHHhcC------------CCHHHHHHHHHHHHHHhhhChHHHHHHHHh--H----------HHHHHhhc
Q 015988 37 SSSASSAVHRALHLIQS------------DDPDLKLEAAREIRRLTKTSQRCRRQLAQA--V----------QPLVLMLR 92 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s------------~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v----------~~Lv~lL~ 92 (397)
.+.+.|.++.|+++|+. ++++.|.+|+++|.+++.+.++......+. + +.+++++.
T Consensus 65 ~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (458)
T 3nmz_A 65 SMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQE 144 (458)
T ss_dssp HHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 35789999999999986 337999999999999999876655554442 3 55566666
Q ss_pred CC----Ch----hHH-------HHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCC-----------CCHHHHHHHHHH
Q 015988 93 AP----DS----DHE-------SALLALLNLAVKDEKNKIKIVEAGALEPIISFLQS-----------PDLNLQEYAAAA 146 (397)
Q Consensus 93 ~~----~~----~~~-------~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~ 146 (397)
++ +. +.+ .|+|+|.|++. ++++|..|.+.|++++|+.+|.. .++.++..|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~a 223 (458)
T 3nmz_A 145 AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA 223 (458)
T ss_dssp TTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred hhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHH
Confidence 52 10 233 89999999988 69999999999999999999952 246789999999
Q ss_pred HHHHhcCCC-Cchhhhh-cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhcccChH
Q 015988 147 LLTLSASSV-NKPFISA-SGAIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFCKKSSK 222 (397)
Q Consensus 147 L~nLs~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 222 (397)
|.||+.+++ ++..+.. .|+++.|+.+|.+++++++..|+++|.||+.. ++++..+++.|+++.|+++|.... +..
T Consensus 224 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~ 302 (458)
T 3nmz_A 224 LTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KES 302 (458)
T ss_dssp HHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHH
T ss_pred HHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHH
Confidence 999998775 6666654 56699999999999999999999999999984 578899999999999999865532 467
Q ss_pred HHHHHHHHHHHhcC-CcccchhhhhccCcHHHHHHHHhcCCH----HHHHHHHHHHHHHhc---cCchhhHHHHHHcCCh
Q 015988 223 TAEKCTSLIESLVG-FDEGRIVLTSEEGGVLAVVEVLENGSL----QAREHAVGALLMMCQ---SDRCKYREPILREGVI 294 (397)
Q Consensus 223 ~~~~a~~~L~nL~~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~----~v~~~a~~~L~~L~~---~~~~~~r~~i~~~g~v 294 (397)
+++.++.+|+||+. +++++..++...|+++.|+.+|.++++ .+++.|+++|.||+. .+ ++.++.+.+.|++
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~G~i 381 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCL 381 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHcccH
Confidence 88999999999998 778888887578999999999987654 589999999999996 34 4789999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhc-CCC-CCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHHh
Q 015988 295 PGLLELTIQGTPKSQTKARTLLQLLRD-SPY-PRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQVS 365 (397)
Q Consensus 295 ~~L~~ll~~~~~~~~~~A~~~L~~l~~-~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~~ 365 (397)
+.|+.++.+++..+++.|+++|++++. ++. .+.+...|+++.++. |. ..+.++. +.|+..|++|....
T Consensus 382 ~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~-LL--~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 382 QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN-LI--HSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHT-TT--TCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HH--hCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999984 444 445666788888774 43 2455555 88999999998754
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.4e-31 Score=265.18 Aligned_cols=323 Identities=15% Similarity=0.231 Sum_probs=273.9
Q ss_pred ccchhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhcC
Q 015988 37 SSSASSAVHRALHLIQ-SDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVKD 112 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~-s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~ 112 (397)
.+++.|+++.||++|+ ++++.+|..|+++|.+++.++++.+..+.+. ||.|+.+|++++. +++.|+++|.+++.++
T Consensus 95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 4578899999999997 4568999999999999999888888887774 9999999999544 7999999999999988
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCC-----HHHHHHHHHHHHHHhcCCCCchhh-hhcCCHHHHHHHHhcCCHHHHHHHHH
Q 015988 113 EKNKIKIVEAGALEPIISFLQSPD-----LNLQEYAAAALLTLSASSVNKPFI-SASGAIPLLVEILRYGSQQAKFDAVM 186 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nLs~~~~~~~~i-~~~g~i~~L~~lL~~~~~~~~~~a~~ 186 (397)
+.+|..+.+.|++++|+.+|...+ ...+..++++|+|++.+......+ ...|+++.|+++|.+++++++..|++
T Consensus 175 ~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 254 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999998764 346778999999999877554444 45789999999999999999999999
Q ss_pred HHHhhcCCchh-HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHH
Q 015988 187 ALSNLSTHPDN-LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQA 265 (397)
Q Consensus 187 aL~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v 265 (397)
+|.+|+..+++ ...+.+.|+++.|+.++.+. +..++..++++|+|++..++.....+.+.|+++.|+.+|.++++.+
T Consensus 255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v 332 (510)
T 3ul1_B 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332 (510)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHH
T ss_pred HHHHHhhchhhhHHHHHhcccchhhhhhhcCC--ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHH
Confidence 99999987655 46667899999999999885 4678999999999998877665555558999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC---CCcccCcCchHHHHHHhh
Q 015988 266 REHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY---PRSELQPDTLENIVCNII 342 (397)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~---~~~~~~~~~~~~ll~~l~ 342 (397)
++.|+++|.||+.++ .+.+..+.+.|+++.|+.++.+++..+|+.|+++|.+++.+.. .......|++++++.-|.
T Consensus 333 ~~~A~~aL~nl~a~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~ 411 (510)
T 3ul1_B 333 QKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411 (510)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCc-HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence 999999999999887 4778888999999999999999999999999999999976543 334666788998875443
Q ss_pred ccCccchhh-HHHHHHHHHHHHHh
Q 015988 343 SQIDGDEQS-GKAKKMLAEMVQVS 365 (397)
Q Consensus 343 ~~~~~~~~~-~~A~~~L~~l~~~~ 365 (397)
....+. ..+...|.+|.+..
T Consensus 412 ---~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 412 ---AKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHh
Confidence 223334 88888898887754
No 5
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.1e-30 Score=261.65 Aligned_cols=323 Identities=15% Similarity=0.229 Sum_probs=273.6
Q ss_pred ccchhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhcC
Q 015988 37 SSSASSAVHRALHLIQ-SDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVKD 112 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~-s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~ 112 (397)
.+.+.|+++.|+++|+ ++++.+|..|+++|.+++.++++.+..+.+. ||.|+.+|.+++. +++.|+++|.+++.++
T Consensus 114 ~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~ 193 (529)
T 3tpo_A 114 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG 193 (529)
T ss_dssp HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 4578899999999996 4568999999999999999887877777664 9999999999544 7999999999999988
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCC-----HHHHHHHHHHHHHHhcCCCCchhh-hhcCCHHHHHHHHhcCCHHHHHHHHH
Q 015988 113 EKNKIKIVEAGALEPIISFLQSPD-----LNLQEYAAAALLTLSASSVNKPFI-SASGAIPLLVEILRYGSQQAKFDAVM 186 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nLs~~~~~~~~i-~~~g~i~~L~~lL~~~~~~~~~~a~~ 186 (397)
+.+|..+.+.|++++|+.+|...+ ......++++|++++.+......+ ...|+++.|+.+|.+++++++..|++
T Consensus 194 ~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~ 273 (529)
T 3tpo_A 194 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 273 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999999999998654 346788999999999876554443 45789999999999999999999999
Q ss_pred HHHhhcCCchh-HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHH
Q 015988 187 ALSNLSTHPDN-LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQA 265 (397)
Q Consensus 187 aL~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v 265 (397)
+|.+|+..++. ...+.+.|+++.|+.++.+. +..++..++.+|+|++..++.....+.+.|+++.|+.+|.++++.+
T Consensus 274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i 351 (529)
T 3tpo_A 274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 351 (529)
T ss_dssp HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred HHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence 99999987654 56677899999999999875 4678899999999998876655555558999999999999999999
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC---CCcccCcCchHHHHHHhh
Q 015988 266 REHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY---PRSELQPDTLENIVCNII 342 (397)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~---~~~~~~~~~~~~ll~~l~ 342 (397)
+..|+++|.||+.++ .+.+..+.+.|++|.|+.++.+++..+++.|+++|.+++.+.. ....+..|++++++.-|.
T Consensus 352 ~~~a~~aL~nl~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 352 QKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHhccc-HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc
Confidence 999999999999987 4678888999999999999999999999999999999976433 344667789998875443
Q ss_pred ccCccchhh-HHHHHHHHHHHHHh
Q 015988 343 SQIDGDEQS-GKAKKMLAEMVQVS 365 (397)
Q Consensus 343 ~~~~~~~~~-~~A~~~L~~l~~~~ 365 (397)
...... ..+...|.+|.+..
T Consensus 431 ---~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 431 ---AKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHh
Confidence 223344 77888888887653
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.98 E-value=3.5e-31 Score=263.99 Aligned_cols=328 Identities=17% Similarity=0.184 Sum_probs=276.1
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHHHHHh-HHHHHHhhcC-CC-hhHHHHHHHHHHhhhcChhhH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKT--SQRCRRQLAQA-VQPLVLMLRA-PD-SDHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~--~~~~~~~l~~~-v~~Lv~lL~~-~~-~~~~~a~~~L~~L~~~~~~~~ 116 (397)
..++.+|+.+++++++.|..|+..++++.+. +|.....+..+ ||.||++|+. .+ .++..|+|+|.|++.++++++
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3589999999999999999999999998764 34455666555 9999999987 32 369999999999999999999
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCC-----HHHHHHHHHHHHh
Q 015988 117 IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGS-----QQAKFDAVMALSN 190 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~-----~~~~~~a~~aL~n 190 (397)
..+++.|++|.|+.+|++++.++++.|+++|+||+.+. .++..+.+.|+++.|+.+|.+.+ ...+..++++|.|
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876 46888889999999999997654 4678899999999
Q ss_pred hcCCchhHHHH-HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHH
Q 015988 191 LSTHPDNLSII-LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHA 269 (397)
Q Consensus 191 Ls~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a 269 (397)
++.+......+ ...|+++.|++++.+. +..++..++++|.+|+..+..+..++.+.|+++.|+.+|.++++.++..+
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence 99875544333 3367899999999875 46788999999999999887777666689999999999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCcc
Q 015988 270 VGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDG 347 (397)
Q Consensus 270 ~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~ 347 (397)
+++|.|++..+ +..+..+.+.|+++.|+.++.+.++.+++.|+++|.+++.+.. .+.++..++++.++..+. ++
T Consensus 295 l~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~---~~ 370 (510)
T 3ul1_B 295 LRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---KA 370 (510)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---SS
T ss_pred HHHHHHhhcCC-HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc---CC
Confidence 99999999887 4678889999999999999999999999999999999987644 344566688888776554 44
Q ss_pred chhh-HHHHHHHHHHHHHhHHHhHHHHHh
Q 015988 348 DEQS-GKAKKMLAEMVQVSMEQSLRHLQQ 375 (397)
Q Consensus 348 ~~~~-~~A~~~L~~l~~~~~~~~~~~~~~ 375 (397)
.... +.|..+|.++.......+...+++
T Consensus 371 ~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~ 399 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVH 399 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 5555 889999999988665555555543
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.98 E-value=2.4e-31 Score=272.78 Aligned_cols=322 Identities=15% Similarity=0.163 Sum_probs=270.1
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-----------------------------HHH---HHHHH-h-HH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQ-----------------------------RCR---RQLAQ-A-VQ 85 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~l~~-~-v~ 85 (397)
+.|+++.|+++|+++++.++..|+++|.+++...+ .++ ..+.+ + +|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 67999999999999999999999999999998541 122 34444 4 99
Q ss_pred HHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh---
Q 015988 86 PLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS--- 161 (397)
Q Consensus 86 ~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--- 161 (397)
.|+.+|++++ .+++.|+|+|.|++. ++++|..+++.|++++|+.+|.++++..++.|+++|.||+.+.+....+.
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 9999999844 379999999999997 67899999999999999999999999999999999999987544333221
Q ss_pred hcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc
Q 015988 162 ASGAIPLLVEILRYG-SQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE 239 (397)
Q Consensus 162 ~~g~i~~L~~lL~~~-~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~ 239 (397)
..|++++|+.+|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.++.+. +..++..|+++|+||+.+++
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLCNLVMSED 655 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHHHHTTSHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCChH
Confidence 246999999999866 455667999999999987 57888999999999999999985 35688999999999999999
Q ss_pred cchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH-cCChHHHHHHhhcCCHHHHHHHHHHHHH
Q 015988 240 GRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR-EGVIPGLLELTIQGTPKSQTKARTLLQL 318 (397)
Q Consensus 240 ~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~~~~~~~~~~A~~~L~~ 318 (397)
.+..++...|+++.|+.++.+++..+++.|+++|.||+..+ +...+.+++ .|+++.|+.++.++++.+|+.|+++|.+
T Consensus 656 ~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s-~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 656 VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS-VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC-HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 98888733789999999999999999999999999999865 356778888 8999999999999999999999999999
Q ss_pred hhcCCC--CCcccCcCchHHHHHHhhccCc-cchhh-HHHHHHHHHHHHHhH
Q 015988 319 LRDSPY--PRSELQPDTLENIVCNIISQID-GDEQS-GKAKKMLAEMVQVSM 366 (397)
Q Consensus 319 l~~~~~--~~~~~~~~~~~~ll~~l~~~~~-~~~~~-~~A~~~L~~l~~~~~ 366 (397)
+..... .+.+...|+++++. .+....+ ...+. +.|.+.|+++.+...
T Consensus 735 L~~~s~e~~~~l~e~G~i~~L~-~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 735 MINAGEEIAKKLFETDIMELLS-GLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHTTCHHHHHHHHTSTHHHHHT-TSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHCCCHHHHH-HHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 976432 55677778888876 4543222 33444 899999999988753
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=1.8e-31 Score=252.25 Aligned_cols=265 Identities=20% Similarity=0.218 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC------------CChhHHHHHHHHHHhhhcChhhHHHHHHc
Q 015988 57 DLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA------------PDSDHESALLALLNLAVKDEKNKIKIVEA 122 (397)
Q Consensus 57 ~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~------------~~~~~~~a~~~L~~L~~~~~~~~~~i~~~ 122 (397)
..+..|+++|.+++.+ +++|..+.+. ++.|+.+|.. ...+++.|+++|.+++.+++.++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4556899999999987 6899998874 9999999952 12268999999999999877788888765
Q ss_pred -CChHHHHHhhCCCCHHHHHHHHHHHHHHhcC--CCCchhhhhcCCHHHHHHHH-hcCCHHHHHHHHHHHHhhcC-Cchh
Q 015988 123 -GALEPIISFLQSPDLNLQEYAAAALLTLSAS--SVNKPFISASGAIPLLVEIL-RYGSQQAKFDAVMALSNLST-HPDN 197 (397)
Q Consensus 123 -g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~aL~nLs~-~~~~ 197 (397)
|.||+|+.+|+++++++++.|+++|+||+.. +++|..+.+.|+++.|+++| ++++.++++.|+++|+||+. .+++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 5599999999999999999999999999985 35889999999999999975 66789999999999999999 6688
Q ss_pred HHHHH-hCCChHHHHHHhhhcccC--hHHHHHHHHHHHHhcC----CcccchhhhhccCcHHHHHHHHhcCCHHHHHHHH
Q 015988 198 LSIIL-GTNPIPSIVDLLIFCKKS--SKTAEKCTSLIESLVG----FDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAV 270 (397)
Q Consensus 198 ~~~i~-~~g~i~~Lv~ll~~~~~~--~~~~~~a~~~L~nL~~----~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~ 270 (397)
+..++ ..|+++.|+++|.+..+. ..+++.|+++|+||+. .++++..+. +.|+++.|+.+|.+++..+++.|+
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HcCCHHHHHHHHcCCChHHHHHHH
Confidence 88888 689999999999876432 1588999999999985 677776666 899999999999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC
Q 015988 271 GALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
++|.||+..+ ++.+..+.+.|+++.|++++.++++.+++.|+++|++|+.+..
T Consensus 285 ~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 285 GTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999765 4789999999999999999999999999999999999987753
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=1.9e-30 Score=266.11 Aligned_cols=323 Identities=15% Similarity=0.150 Sum_probs=266.5
Q ss_pred hHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChHHHHHHHH--h-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcCh---
Q 015988 43 AVHRALHLIQSD--DPDLKLEAAREIRRLTKTSQRCRRQLAQ--A-VQPLVLMLRAPDS-DHESALLALLNLAVKDE--- 113 (397)
Q Consensus 43 ~l~~lv~lL~s~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~--- 113 (397)
.++.++++|.++ +++++..|++.|..++... +.|..+.. + +|.|+++|++.+. ++..|+++|.|++.+.+
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~-~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA-ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 356688888887 8899999999999999875 66666553 3 9999999998443 79999999999998542
Q ss_pred --------------------------hhH---HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcC
Q 015988 114 --------------------------KNK---IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASG 164 (397)
Q Consensus 114 --------------------------~~~---~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g 164 (397)
.++ ..+++.|++++|+.+|+++++.+++.|+++|.|++.+++++..+.+.|
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G 536 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG 536 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 123 678899999999999999999999999999999998888999999999
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHH---hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCc-cc
Q 015988 165 AIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIIL---GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFD-EG 240 (397)
Q Consensus 165 ~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~---~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~-~~ 240 (397)
++++|+.+|.++++..++.|+++|.||+.+.+....+. ..|++++|+++|.++ ........|+.+|.||+..+ +.
T Consensus 537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~NLa~~~d~~ 615 (810)
T 3now_A 537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD-CTALENFESLMALTNLASMNESV 615 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999987533332221 146899999999854 23334468999999999875 55
Q ss_pred chhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH-cCChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 241 RIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR-EGVIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 241 ~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~-~g~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
+..++ +.|+++.|+.+|.++++.+++.|+++|+||+.++ +.+..+.+ .|+++.|+.++.+.+..+|+.|+++|.++
T Consensus 616 ~~~Ii-~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanL 692 (810)
T 3now_A 616 RQRII-KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAII 692 (810)
T ss_dssp HHHHH-HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 66666 8899999999999999999999999999999975 67777876 78999999999999999999999999999
Q ss_pred hc-CCC-CCcccC-cCchHHHHHHhhccCccchhh-HHHHHHHHHHHHHhHHHhHHHHH
Q 015988 320 RD-SPY-PRSELQ-PDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQVSMEQSLRHLQ 374 (397)
Q Consensus 320 ~~-~~~-~~~~~~-~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~~~~~~~~~~~ 374 (397)
+. ++. .+.++. .++++.++.-+. ++.... ..|..+|.|+...+. ...+.+.
T Consensus 693 t~~s~~~~~~ii~~~g~I~~Lv~LL~---s~d~~vq~~A~~aL~NL~~~s~-e~~~~l~ 747 (810)
T 3now_A 693 TSVSVKCCEKILAIASWLDILHTLIA---NPSPAVQHRGIVIILNMINAGE-EIAKKLF 747 (810)
T ss_dssp HHHCHHHHHHHHTSTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHC---CCCHHHHHHHHHHHHHHHhCCH-HHHHHHH
Confidence 87 443 667787 789998885443 455555 889999999987553 3344444
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=254.09 Aligned_cols=260 Identities=20% Similarity=0.236 Sum_probs=228.2
Q ss_pred HHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcC------------CChhHHHHHHHHHHhhhcChhhHHHHHHc-CCh
Q 015988 61 EAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRA------------PDSDHESALLALLNLAVKDEKNKIKIVEA-GAL 125 (397)
Q Consensus 61 ~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~------------~~~~~~~a~~~L~~L~~~~~~~~~~i~~~-g~i 125 (397)
+|+++|.+++.+ +++|..+.+. ++.|+.+|.. +..+++.|+++|.|++.+++.++..+... |.+
T Consensus 167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 899999999765 7899998874 9999999941 12258999999999999777788888764 559
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcC--CCCchhhhhcCCHHHHHHHH-hcCCHHHHHHHHHHHHhhcC-CchhHHHH
Q 015988 126 EPIISFLQSPDLNLQEYAAAALLTLSAS--SVNKPFISASGAIPLLVEIL-RYGSQQAKFDAVMALSNLST-HPDNLSII 201 (397)
Q Consensus 126 ~~L~~lL~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~aL~nLs~-~~~~~~~i 201 (397)
++|+.+|+++++++++.|+++|+||+.. +++|..+.+.|+++.|+++| .++++.+++.|+.+|+||+. .++++..+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999985 35889999999999999975 56789999999999999999 77888888
Q ss_pred H-hCCChHHHHHHhhhcccCh--HHHHHHHHHHHHhcC----CcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 202 L-GTNPIPSIVDLLIFCKKSS--KTAEKCTSLIESLVG----FDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALL 274 (397)
Q Consensus 202 ~-~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~nL~~----~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 274 (397)
+ ..|+++.|+++|.+..+.. .+++.|+++|+||+. .++++..+. +.|+++.|+.+|.+++..+++.|+++|.
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 8 6999999999998764322 588999999999984 666776666 8999999999999999999999999999
Q ss_pred HHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 275 MMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 275 ~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
|++..+ ++.+..+++.|+++.|++++.++++.+++.|+++|++|..+.
T Consensus 405 nLa~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999765 478999999999999999999999999999999999997654
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=1.1e-29 Score=254.53 Aligned_cols=328 Identities=17% Similarity=0.183 Sum_probs=275.8
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC--hHHHHHHHHh-HHHHHHhhcC-CC-hhHHHHHHHHHHhhhcChhhH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTS--QRCRRQLAQA-VQPLVLMLRA-PD-SDHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~--~~~~~~l~~~-v~~Lv~lL~~-~~-~~~~~a~~~L~~L~~~~~~~~ 116 (397)
..++.+++.+++++++.+..|+..++++.+.. +.....+..+ ||.||++|+. .+ .++..|+|+|.+++.++++++
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35889999999999999999999999987542 3444555555 9999999976 32 369999999999999888999
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCC-----HHHHHHHHHHHHh
Q 015988 117 IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGS-----QQAKFDAVMALSN 190 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~-----~~~~~~a~~aL~n 190 (397)
..+++.|+++.|+.+|.+++.++++.|+++|+||+.+. +++..+.+.|+++.|+.+|..++ ......++++|.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876 57888899999999999997643 4678899999999
Q ss_pred hcCCchhHHHH-HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHH
Q 015988 191 LSTHPDNLSII-LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHA 269 (397)
Q Consensus 191 Ls~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a 269 (397)
++.+......+ ...|+++.|++++.+. +..++..++++|.+++..+..+..++.+.|+++.|+.+|.++++.++..+
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 99876544333 3467899999999875 46788999999999998887777666689999999999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCcc
Q 015988 270 VGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDG 347 (397)
Q Consensus 270 ~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~ 347 (397)
+.+|.|++..+ +..+..+.+.|+++.|+.++.+.++.+++.|+++|.+++.+.. .+.++..|+++.++..+. ++
T Consensus 314 ~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~---~~ 389 (529)
T 3tpo_A 314 LRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---KA 389 (529)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH---SS
T ss_pred HHHHHHHHccc-hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc---CC
Confidence 99999999877 4778889999999999999999999999999999999987644 344566688888776554 44
Q ss_pred chhh-HHHHHHHHHHHHHhHHHhHHHHHh
Q 015988 348 DEQS-GKAKKMLAEMVQVSMEQSLRHLQQ 375 (397)
Q Consensus 348 ~~~~-~~A~~~L~~l~~~~~~~~~~~~~~ 375 (397)
.... +.|..+|.++.......+.+.+++
T Consensus 390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~ 418 (529)
T 3tpo_A 390 DFKTQKAAAWAITNYTSGGTVEQIVYLVH 418 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4455 889999999987665555555553
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=1.3e-28 Score=246.72 Aligned_cols=324 Identities=17% Similarity=0.228 Sum_probs=277.2
Q ss_pred ccchhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCC-hhHHHHHHHHHHhhhcC
Q 015988 37 SSSASSAVHRALHLIQSDD-PDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPD-SDHESALLALLNLAVKD 112 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~-~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~ 112 (397)
.+...|+++.|+++|.+++ +.+|..|+++|.+++..+++.+..+.+. ++.|+.+|++++ .++..|+++|.+++..+
T Consensus 112 ~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 191 (528)
T 4b8j_A 112 EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS 191 (528)
T ss_dssp HHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence 3467799999999999886 9999999999999999877888877763 999999999844 37999999999999988
Q ss_pred hhhHHHHHHcCChHHHHHhh-CCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015988 113 EKNKIKIVEAGALEPIISFL-QSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNL 191 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nL 191 (397)
+.++..+.+.|++++|+.+| .+.+..++..++++|++|+...+........|+++.|+.+|.+++++++..|+++|.+|
T Consensus 192 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 192 PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYL 271 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999999 56789999999999999998776666666799999999999999999999999999999
Q ss_pred cCCchhH-HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcC-CHHHHHHH
Q 015988 192 STHPDNL-SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENG-SLQAREHA 269 (397)
Q Consensus 192 s~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~a 269 (397)
+...+.+ ..+.+.|+++.|+.++.+. +..++..|+++|.||+...+.....+.+.|+++.|+.+|.++ ++.++..|
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A 349 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEA 349 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHHHHHcCC--ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHH
Confidence 9876554 6777899999999999885 467899999999999986654444444899999999999998 89999999
Q ss_pred HHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC--CC-CCcccCcCchHHHHHHhhccCc
Q 015988 270 VGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS--PY-PRSELQPDTLENIVCNIISQID 346 (397)
Q Consensus 270 ~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~--~~-~~~~~~~~~~~~ll~~l~~~~~ 346 (397)
+++|.||+..+ .+....+.+.|+++.|+.++.++++.+++.|+++|.+++.. +. ....+..+.++.++..|. +
T Consensus 350 ~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---~ 425 (528)
T 4b8j_A 350 CWTISNITAGN-KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLI---C 425 (528)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG---C
T ss_pred HHHHHHHHCCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHc---C
Confidence 99999999866 46677888999999999999999999999999999999765 22 334555688888875443 2
Q ss_pred cchhh-HHHHHHHHHHHHHhH
Q 015988 347 GDEQS-GKAKKMLAEMVQVSM 366 (397)
Q Consensus 347 ~~~~~-~~A~~~L~~l~~~~~ 366 (397)
..+.. ..|...|.++.+...
T Consensus 426 ~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 426 PDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 33444 889999999987653
No 13
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=7.6e-30 Score=250.81 Aligned_cols=318 Identities=17% Similarity=0.219 Sum_probs=258.7
Q ss_pred ccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhc-CCC-hhHHHHHHHHHHhhhcC
Q 015988 37 SSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLR-APD-SDHESALLALLNLAVKD 112 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~-~~~-~~~~~a~~~L~~L~~~~ 112 (397)
.+.+.|+++.|+++|+++++.+|..|+++|.+++..+++++..+.+. ||.|+++|+ +.+ .+++.|+++|.+++.+
T Consensus 39 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~- 117 (457)
T 1xm9_A 39 QVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST- 117 (457)
T ss_dssp HHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-
Confidence 56789999999999999999999999999999999878999998774 999999999 543 3799999999999995
Q ss_pred hhhHHHHHHcCChHHHHHhhC--------CC--------CHHHHHHHHHHHHHHhcCCCCchhhhhc-CCHHHHHHHHhc
Q 015988 113 EKNKIKIVEAGALEPIISFLQ--------SP--------DLNLQEYAAAALLTLSASSVNKPFISAS-GAIPLLVEILRY 175 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~--------~~--------~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~L~~lL~~ 175 (397)
+++|..+++ |++++|+.+|. ++ ++++...|+++|+||+.+++++..+.+. |+++.|+.+|.+
T Consensus 118 ~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 118 DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 889999999 99999999993 22 4566779999999999887788888887 999999999986
Q ss_pred ------CCHHHHHHHHHHHHhhcCC---------------------------------------------------chhH
Q 015988 176 ------GSQQAKFDAVMALSNLSTH---------------------------------------------------PDNL 198 (397)
Q Consensus 176 ------~~~~~~~~a~~aL~nLs~~---------------------------------------------------~~~~ 198 (397)
.+..++++++.+|+||+.. ++..
T Consensus 197 ~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (457)
T 1xm9_A 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276 (457)
T ss_dssp HHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred hccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence 3556888999999999732 1122
Q ss_pred HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccc-----hhhhhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 199 SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGR-----IVLTSEEGGVLAVVEVLENGSLQAREHAVGAL 273 (397)
Q Consensus 199 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~-----~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 273 (397)
+.+.+.|+++.|+.+|.+. .+..+++.|+++|.||+.+.... +.++.+.|+++.|+++|.+++.+++..|+++|
T Consensus 277 ~~l~~~~~l~~L~~lL~~~-~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL 355 (457)
T 1xm9_A 277 GWLYHSDAIRTYLNLMGKS-KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLL 355 (457)
T ss_dssp GGGGSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhhc-CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHH
Confidence 3344567788999999886 34688999999999998866432 23444689999999999999999999999999
Q ss_pred HHHhccCchhhHHHHHHcCChHHHHHHhhcCCH------HHHHHHHHHHHHhhcCC-C-CCcccCcCchHHHHHHhhccC
Q 015988 274 LMMCQSDRCKYREPILREGVIPGLLELTIQGTP------KSQTKARTLLQLLRDSP-Y-PRSELQPDTLENIVCNIISQI 345 (397)
Q Consensus 274 ~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~------~~~~~A~~~L~~l~~~~-~-~~~~~~~~~~~~ll~~l~~~~ 345 (397)
.|++.+. +.+..| ..|+++.|+++|...++ .+...++++|.++.... . .+.+...|++++++.-+.
T Consensus 356 ~nls~~~--~~~~~i-~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~--- 429 (457)
T 1xm9_A 356 SNMSRHP--LLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR--- 429 (457)
T ss_dssp HHHHTSG--GGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHH---
T ss_pred HHHhcCH--HHHHHH-HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHc---
Confidence 9999864 666555 45799999999988643 67788899999986543 3 555667789998875433
Q ss_pred cc-chhh-HHHHHHHHHHHH
Q 015988 346 DG-DEQS-GKAKKMLAEMVQ 363 (397)
Q Consensus 346 ~~-~~~~-~~A~~~L~~l~~ 363 (397)
.+ .++. ++|..+|.++..
T Consensus 430 ~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 430 SSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp CTTCHHHHHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHHHHHHHHc
Confidence 33 5566 899999987753
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=1.2e-29 Score=252.07 Aligned_cols=339 Identities=17% Similarity=0.177 Sum_probs=265.7
Q ss_pred CccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-ChHHHHHHHHh--HHHHHHhhcC-CCh-hHHHHHHHHHHhhh
Q 015988 36 SSSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKT-SQRCRRQLAQA--VQPLVLMLRA-PDS-DHESALLALLNLAV 110 (397)
Q Consensus 36 ~~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~-~~~~~~~l~~~--v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~ 110 (397)
..+.+.|+++.||++|+++++.+|..|+++|.+++.. ++++|..+.+. |+.|+.+|++ .+. +++.++++|.+|+.
T Consensus 84 ~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 84 TDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 3456889999999999999999999999999999985 57899998885 9999999997 443 68999999999998
Q ss_pred cChhhHHHHHHcCChHHHHHhhC------------------CCCHHHHHHHHHHHHHHhcCCC-Cchhhhh-cCCHHHHH
Q 015988 111 KDEKNKIKIVEAGALEPIISFLQ------------------SPDLNLQEYAAAALLTLSASSV-NKPFISA-SGAIPLLV 170 (397)
Q Consensus 111 ~~~~~~~~i~~~g~i~~L~~lL~------------------~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~-~g~i~~L~ 170 (397)
++.++..|++ +++++|+.++. ..++++++.|+++|.||+.+++ ++..+.+ .|+++.|+
T Consensus 164 -~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV 241 (584)
T 3l6x_A 164 -HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241 (584)
T ss_dssp -SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHH
T ss_pred -CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHH
Confidence 7899999996 57999999871 2357899999999999998774 5888887 56678999
Q ss_pred HHHhc------CCHHHHHHHHHHHHhhcCCchh--------------------------HHHHHhCCChHHHHHHhhhcc
Q 015988 171 EILRY------GSQQAKFDAVMALSNLSTHPDN--------------------------LSIILGTNPIPSIVDLLIFCK 218 (397)
Q Consensus 171 ~lL~~------~~~~~~~~a~~aL~nLs~~~~~--------------------------~~~i~~~g~i~~Lv~ll~~~~ 218 (397)
.+|++ .+...+++|+++|+||+...+. ...+...++++.|+.+++...
T Consensus 242 ~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~ 321 (584)
T 3l6x_A 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK 321 (584)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC
T ss_pred HHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC
Confidence 99975 4678999999999999975210 111122344677889997653
Q ss_pred cChHHHHHHHHHHHHhcCCcc----cchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCCh
Q 015988 219 KSSKTAEKCTSLIESLVGFDE----GRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVI 294 (397)
Q Consensus 219 ~~~~~~~~a~~~L~nL~~~~~----~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v 294 (397)
...+++.|+++|.||+.+.. ....++.++|+++.|+++|.++++.+++.|+++|.||+.+. ..+..| ..|++
T Consensus 322 -~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~--~~~~~I-~~g~i 397 (584)
T 3l6x_A 322 -TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--RNKELI-GKHAI 397 (584)
T ss_dssp -CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC--SCHHHH-HHHHH
T ss_pred -CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--hHHHHH-HhCCH
Confidence 57889999999999987642 22334557899999999999999999999999999999986 567655 77899
Q ss_pred HHHHHHhhcC--------CHHHHHHHHHHHHHhhc-CCC-CCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHH
Q 015988 295 PGLLELTIQG--------TPKSQTKARTLLQLLRD-SPY-PRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQ 363 (397)
Q Consensus 295 ~~L~~ll~~~--------~~~~~~~A~~~L~~l~~-~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~ 363 (397)
+.|+.+|.++ +..+...|+++|.++.. ++. .+.+...|+++.++.-+..+ +..+.. +.|+.+|.+|..
T Consensus 398 p~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~-~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSG-NRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCS-SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CCChHHHHHHHHHHHHHHc
Confidence 9999999876 46788899999999864 443 56677789999988644321 124455 888899988855
Q ss_pred HhHHHhHHHHHhhhhccCCCCC
Q 015988 364 VSMEQSLRHLQQRALVCTPADL 385 (397)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~ 385 (397)
+...+...++..+.- .||
T Consensus 477 ---~~elr~~~kk~G~~~-~~f 494 (584)
T 3l6x_A 477 ---YKELRKPLEKEGWKK-SDF 494 (584)
T ss_dssp ---SHHHHHHHHTTTCCG-GGG
T ss_pred ---CHHHHHHHHHcCCCH-HHh
Confidence 445555555533332 355
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=8.8e-29 Score=247.81 Aligned_cols=328 Identities=18% Similarity=0.178 Sum_probs=275.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-HH-HHHHHHh-HHHHHHhhcCCC--hhHHHHHHHHHHhhhcChhh
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQ-RC-RRQLAQA-VQPLVLMLRAPD--SDHESALLALLNLAVKDEKN 115 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~-~~-~~~l~~~-v~~Lv~lL~~~~--~~~~~a~~~L~~L~~~~~~~ 115 (397)
...++.+++.|.++++.+|..|++.|.+++.... .. ...+..+ ++.|+.+|++++ .++..|+++|.+++.+++++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3458999999999999999999999999987542 33 4444444 999999999843 47999999999999988999
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHH-hcCCHHHHHHHHHHHHhhcC
Q 015988 116 KIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEIL-RYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~aL~nLs~ 193 (397)
+..+++.|+++.|+.+|.++++.++..|+++|++++.+. .++..+...|+++.|+.+| .+.++.++..++++|.+|+.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999865 4678888999999999999 67889999999999999998
Q ss_pred CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 194 HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGAL 273 (397)
Q Consensus 194 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 273 (397)
...........|+++.|++++.+. +..++..++++|.+|+.....+...+.+.|+++.|+.+|.++++.++..|+++|
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 755444555689999999999875 468899999999999988777655555889999999999999999999999999
Q ss_pred HHHhccCchhhHHHHHHcCChHHHHHHhhcC-CHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCccchh
Q 015988 274 LMMCQSDRCKYREPILREGVIPGLLELTIQG-TPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDGDEQ 350 (397)
Q Consensus 274 ~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~ 350 (397)
.|++..+ ...+..+.+.|+++.|+.++.+. ++.+++.|+++|.+++.... .+..+..+.++.++..|. ++...
T Consensus 311 ~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~ 386 (528)
T 4b8j_A 311 GNIVTGD-DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ---TAEFD 386 (528)
T ss_dssp HHHTTSC-HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH---HSCHH
T ss_pred HHHHcCC-HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh---cCCHH
Confidence 9999977 46778888999999999999998 99999999999999987533 345566688888886554 33445
Q ss_pred h-HHHHHHHHHHHHHhHHHhHHHHH
Q 015988 351 S-GKAKKMLAEMVQVSMEQSLRHLQ 374 (397)
Q Consensus 351 ~-~~A~~~L~~l~~~~~~~~~~~~~ 374 (397)
. ..|..+|.++.......+.+.+.
T Consensus 387 v~~~a~~aL~nl~~~~~~~~~~~l~ 411 (528)
T 4b8j_A 387 IKKEAAWAISNATSGGSHDQIKYLV 411 (528)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5 88999999998874344444443
No 16
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.6e-30 Score=245.86 Aligned_cols=264 Identities=19% Similarity=0.207 Sum_probs=223.2
Q ss_pred HHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHHhcCCC-Cchhhhh-cC
Q 015988 98 HESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQS-----------PDLNLQEYAAAALLTLSASSV-NKPFISA-SG 164 (397)
Q Consensus 98 ~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~nLs~~~~-~~~~i~~-~g 164 (397)
+..|+++|.+++. ++++|..|++.|++++|+.+|.. .+++++..|+++|.||+..++ +|..+.. .|
T Consensus 49 ~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 49 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp HHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 5679999999999 58999999999999999999952 246789999999999998765 7777764 56
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcC-Ccccc
Q 015988 165 AIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG-FDEGR 241 (397)
Q Consensus 165 ~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~-~~~~~ 241 (397)
+++.|+.+|+++++++++.|+++|+||+.. ++++..+++.|+++.|+++|.+. .+..+++.++.+|+||+. .++++
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-KKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC-CCHHHHHHHHHHHHHHHccChhhh
Confidence 699999999999999999999999999984 57889999999999999986553 245788999999999998 66777
Q ss_pred hhhhhccCcHHHHHHHHhcCCH----HHHHHHHHHHHHHhc---cCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHH
Q 015988 242 IVLTSEEGGVLAVVEVLENGSL----QAREHAVGALLMMCQ---SDRCKYREPILREGVIPGLLELTIQGTPKSQTKART 314 (397)
Q Consensus 242 ~~~~~~~g~i~~Lv~lL~~~~~----~v~~~a~~~L~~L~~---~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~ 314 (397)
..++...|+++.|+.+|.++++ .+++.|+++|.||+. .+ ++.++.+.+.|+++.|++++.+++..+++.|++
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 7776578999999999987654 589999999999997 34 478999999999999999999999999999999
Q ss_pred HHHHhhc-CCC-CCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHHhHH
Q 015988 315 LLQLLRD-SPY-PRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQVSME 367 (397)
Q Consensus 315 ~L~~l~~-~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~~~~ 367 (397)
+|++++. ++. .+.+...|+++.++. |. .++.++. +.|...|++|......
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~-LL--~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKN-LI--HSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHT-TT--TCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHH-HH--hCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999984 444 445666788888774 43 2455555 8899999999886543
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=5.5e-28 Score=242.23 Aligned_cols=323 Identities=16% Similarity=0.191 Sum_probs=275.3
Q ss_pred cchhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChHHHHHHHH-h-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcCh
Q 015988 38 SSASSAVHRALHLIQSD-DPDLKLEAAREIRRLTKTSQRCRRQLAQ-A-VQPLVLMLRAPDS-DHESALLALLNLAVKDE 113 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~ 113 (397)
+...|.++.|+++|.++ ++.+|..|+++|.+++..+++.+..+.+ + ++.|+.+|++++. ++..|+++|.+++..++
T Consensus 126 ~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~ 205 (530)
T 1wa5_B 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 205 (530)
T ss_dssp HHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc
Confidence 45679999999999987 8999999999999999987777777765 3 9999999988443 79999999999999778
Q ss_pred hhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 015988 114 KNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLS 192 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs 192 (397)
.++..+...|+++.|+.++.+.+..++..++++|++|+.+. +........++++.|+.+|.++++.++..++++|.+|+
T Consensus 206 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999876 55566667899999999999999999999999999999
Q ss_pred CC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHH
Q 015988 193 TH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVG 271 (397)
Q Consensus 193 ~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~ 271 (397)
.. ++....+.+.|+++.|+.++.+. +..++..|+++|.|++...+.....+.+.|+++.|+.+|.++++.++..|++
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~ 363 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHH
Confidence 86 45677788899999999999864 4678999999999998776554444447899999999999999999999999
Q ss_pred HHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC--C--C-CCcccCcCchHHHHHHhhccCc
Q 015988 272 ALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS--P--Y-PRSELQPDTLENIVCNIISQID 346 (397)
Q Consensus 272 ~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~--~--~-~~~~~~~~~~~~ll~~l~~~~~ 346 (397)
+|.+++..+ .+....+++.|+++.|+.++.+.++.+++.|+++|.+++.. + . .+..+..++++.++..+. +
T Consensus 364 aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~---~ 439 (530)
T 1wa5_B 364 TISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE---I 439 (530)
T ss_dssp HHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT---T
T ss_pred HHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh---C
Confidence 999999876 35667788999999999999999999999999999999653 2 2 344556688888875443 2
Q ss_pred cchhh-HHHHHHHHHHHHHhH
Q 015988 347 GDEQS-GKAKKMLAEMVQVSM 366 (397)
Q Consensus 347 ~~~~~-~~A~~~L~~l~~~~~ 366 (397)
..+.. ..|..+|.++.....
T Consensus 440 ~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 440 ADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhh
Confidence 34445 788899998887654
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=4.2e-27 Score=230.28 Aligned_cols=321 Identities=15% Similarity=0.172 Sum_probs=270.7
Q ss_pred chh-hhHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChHHHHHHHH-h-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcCh
Q 015988 39 SAS-SAVHRALHLIQSD-DPDLKLEAAREIRRLTKTSQRCRRQLAQ-A-VQPLVLMLRAPDS-DHESALLALLNLAVKDE 113 (397)
Q Consensus 39 ~~~-~~l~~lv~lL~s~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~ 113 (397)
... |.++.|+++|+++ ++.+|..|+++|.+++..+++.+..+.+ + ++.|+.+|++++. +++.|+++|.+++..++
T Consensus 60 ~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~ 139 (450)
T 2jdq_A 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST 139 (450)
T ss_dssp HTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH
Confidence 445 8999999999988 8999999999999999977666665554 3 9999999998443 79999999999999888
Q ss_pred hhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCC-C-CchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 114 KNKIKIVEAGALEPIISFLQS-PDLNLQEYAAAALLTLSASS-V-NKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~-~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
.++..+.+.|+++.|+.++.+ .+..++..++++|++++.+. + .+..+ ..++++.|+.++.++++.++..++++|.+
T Consensus 140 ~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 899999999999999999995 68999999999999999764 3 33333 38999999999999999999999999999
Q ss_pred hcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHH
Q 015988 191 LSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHA 269 (397)
Q Consensus 191 Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a 269 (397)
|+.. ++....+...|+++.|++++.+. +..++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..|
T Consensus 219 l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a 296 (450)
T 2jdq_A 219 LSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296 (450)
T ss_dssp HTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHH
T ss_pred HHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHH
Confidence 9986 46677788899999999999864 46889999999999998776555444478999999999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC--CC-CCcccCcCchHHHHHHhhccCc
Q 015988 270 VGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS--PY-PRSELQPDTLENIVCNIISQID 346 (397)
Q Consensus 270 ~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~--~~-~~~~~~~~~~~~ll~~l~~~~~ 346 (397)
+++|.+++..+ .+..+.+.+.|+++.|++++.++++.+|+.|+++|.+++.. +. .+..+..++++.++..+. +
T Consensus 297 ~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---~ 372 (450)
T 2jdq_A 297 CWTISNITAGN-RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT---V 372 (450)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGG---S
T ss_pred HHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhc---C
Confidence 99999999866 46677888899999999999999999999999999999754 22 444556688888876443 2
Q ss_pred cchhh-HHHHHHHHHHHHHhH
Q 015988 347 GDEQS-GKAKKMLAEMVQVSM 366 (397)
Q Consensus 347 ~~~~~-~~A~~~L~~l~~~~~ 366 (397)
..... +.|...|.++.....
T Consensus 373 ~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 373 MDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhch
Confidence 34445 888899998887554
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=1.7e-27 Score=238.71 Aligned_cols=319 Identities=16% Similarity=0.147 Sum_probs=269.3
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHHHHHh-HHHHHHhhcCC-Ch-hHHHHHHHHHHhhhcChh
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKT--SQRCRRQLAQA-VQPLVLMLRAP-DS-DHESALLALLNLAVKDEK 114 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~--~~~~~~~l~~~-v~~Lv~lL~~~-~~-~~~~a~~~L~~L~~~~~~ 114 (397)
..+.++.++..|+++++.+|..|+..|.++... ++.....+..+ ++.|+.+|.++ +. ++..|+++|.+++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 446699999999999999999999999999764 23334444444 99999999984 44 799999999999998888
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 115 NKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
.+..+++.|+++.|+.+|.+++++++..|+++|++++.+. .++..+...|+++.|+.+|.+.++.++..|+++|.+|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999875 577788889999999999999999999999999999998
Q ss_pred Cc-hhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHHHHHhcCCHHHHHHHHH
Q 015988 194 HP-DNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVVEVLENGSLQAREHAVG 271 (397)
Q Consensus 194 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~ 271 (397)
.. .........++++.|++++.+. +..++..++++|.+|+.... ....++ +.|+++.|+.+|.++++.++..|++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~lL~~~~~~v~~~a~~ 321 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHESTLVQTPALR 321 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHHHHCCCChhhHHHHHH
Confidence 65 4455556688999999999875 46889999999999987654 444444 7899999999999999999999999
Q ss_pred HHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCccch
Q 015988 272 ALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDGDE 349 (397)
Q Consensus 272 ~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~ 349 (397)
+|.+++..+ +...+.+.+.|+++.|+.++.+.++.+++.|+++|.+++.... .+.++..++++.++..|. ++..
T Consensus 322 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~ 397 (530)
T 1wa5_B 322 AVGNIVTGN-DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE---VAEY 397 (530)
T ss_dssp HHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---HSCH
T ss_pred HHHHHHcCC-HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---cCCH
Confidence 999999876 3667788889999999999999999999999999999986432 344556788888886553 3444
Q ss_pred hh-HHHHHHHHHHHHHh
Q 015988 350 QS-GKAKKMLAEMVQVS 365 (397)
Q Consensus 350 ~~-~~A~~~L~~l~~~~ 365 (397)
.. ..|..+|.++....
T Consensus 398 ~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 398 KTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 55 88999999998764
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.95 E-value=2.3e-26 Score=225.10 Aligned_cols=314 Identities=16% Similarity=0.178 Sum_probs=263.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHHHHH-h-HHHHHHhhcCC-Ch-hHHHHHHHHHHhhhcChhhH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTK--TSQRCRRQLAQ-A-VQPLVLMLRAP-DS-DHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~--~~~~~~~~l~~-~-v~~Lv~lL~~~-~~-~~~~a~~~L~~L~~~~~~~~ 116 (397)
.++.+++.++++++.+|..|+..|.++.. .++..+..+.. + ++.|+++|++. +. ++..|+++|.+++..++++.
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 37889999999999999999999999875 34455666665 5 99999999984 43 79999999999999778888
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcCC
Q 015988 117 IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRY-GSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~aL~nLs~~ 194 (397)
..+++.|+++.|+.+|++++++++..|+++|++++.+. +.+..+.+.|+++.|+.++.+ .+..++..|+++|.+|+..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999876 467778889999999999995 7899999999999999976
Q ss_pred c--hhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHHHHHhcCCHHHHHHHHH
Q 015988 195 P--DNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVVEVLENGSLQAREHAVG 271 (397)
Q Consensus 195 ~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~ 271 (397)
. .....+. .++++.|++++.+. +..++..++++|.+|+.... ....+. +.|+++.|+.+|.++++.++..+++
T Consensus 181 ~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 181 KSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYLSDGPNDKIQAVI-DAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp SSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSSHHHHHHHH-HTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHHHCCCcHHHHHHH-HcCcHHHHHHHHCCCchhHHHHHHH
Confidence 3 3333333 78999999999874 46788999999999998654 444444 7899999999999999999999999
Q ss_pred HHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCccch
Q 015988 272 ALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDGDE 349 (397)
Q Consensus 272 ~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~ 349 (397)
+|.+++... +..++.+.+.|+++.|++++.+.++.+++.|+++|.+++.... .+.++..+.++.++..+. ++..
T Consensus 257 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~---~~~~ 332 (450)
T 2jdq_A 257 AVGNIVTGD-DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ---TAEF 332 (450)
T ss_dssp HHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---HSCH
T ss_pred HHHHHhhCC-hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---cCCH
Confidence 999999887 3566778889999999999999999999999999999986432 344555688888776554 3344
Q ss_pred hh-HHHHHHHHHHHHH
Q 015988 350 QS-GKAKKMLAEMVQV 364 (397)
Q Consensus 350 ~~-~~A~~~L~~l~~~ 364 (397)
.. ..|..+|.++...
T Consensus 333 ~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 333 RTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC
Confidence 55 8899999999876
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=4.8e-27 Score=234.78 Aligned_cols=319 Identities=19% Similarity=0.197 Sum_probs=267.4
Q ss_pred ccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH---hHHHHHHhhcC-CCh-hHHHHHHHHHHhhhc
Q 015988 37 SSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ---AVQPLVLMLRA-PDS-DHESALLALLNLAVK 111 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~---~v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~ 111 (397)
.....|.++.|+++|+++++.+|..|+..|.+++.++ ..+..+.. .++.|+++|++ ++. ++..|+.+|.+++.
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~- 89 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH- 89 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-
Confidence 3457889999999999999999999999999999875 45554442 39999999975 343 68999999999998
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 112 DEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
+++++..+.+.|+++.|+.+|++++++++..++++|++++.++ ..+..+.+.|+++.|+.+|.+++++++..++.+|.+
T Consensus 90 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 90 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169 (529)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999875 567777799999999999999999999999999999
Q ss_pred hcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHH
Q 015988 191 LSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHA 269 (397)
Q Consensus 191 Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a 269 (397)
++.. ++++..+.+.|+++.|+++++++. .......++.+|.||+.+++++..++ +.|+++.|+.++.++++.+++.+
T Consensus 170 la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~~~~a 247 (529)
T 1jdh_A 170 LAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQRLVQNC 247 (529)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHH-HTTHHHHHHTTTTSSCHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhCCChHHHHHH
Confidence 9985 788899999999999999999863 45677889999999999999888887 88999999999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCcc
Q 015988 270 VGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDG 347 (397)
Q Consensus 270 ~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~ 347 (397)
+++|.+++..... .. ...|+++.|++++.+.++.+++.|+++|.+++.... .+.+...++++.++..+....+.
T Consensus 248 ~~~L~~l~~~~~~--~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~ 323 (529)
T 1jdh_A 248 LWTLRNLSDAATK--QE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323 (529)
T ss_dssp HHHHHHHHTTCTT--CS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCChh--hH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCH
Confidence 9999999987521 11 124789999999999999999999999999987643 44455678888888655421222
Q ss_pred chhh-HHHHHHHHHHHHH
Q 015988 348 DEQS-GKAKKMLAEMVQV 364 (397)
Q Consensus 348 ~~~~-~~A~~~L~~l~~~ 364 (397)
+.. ..|...|+++...
T Consensus 324 -~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 324 -EDITEPAICALRHLTSR 340 (529)
T ss_dssp -HHHHHHHHHHHHHHTSS
T ss_pred -HHHHHHHHHHHHHHHcC
Confidence 334 8899999998754
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=1e-26 Score=209.59 Aligned_cols=238 Identities=22% Similarity=0.315 Sum_probs=215.7
Q ss_pred HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-CCCchhhh
Q 015988 84 VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSAS-SVNKPFIS 161 (397)
Q Consensus 84 v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~ 161 (397)
++.|+++|++++. ++..|+++|.+++..+++++..+.+.|+++.|+.+|++++++++..++.+|++++.+ ++++..+.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 7889999988444 689999999999997878999999999999999999999999999999999999987 56888899
Q ss_pred hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc
Q 015988 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLST-HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG 240 (397)
Q Consensus 162 ~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~ 240 (397)
+.|+++.|+.+|.+++++++..|+++|.+|+. .++++..+.+.|+++.|++++++. +..++..++++|.||+...+.
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999994 678889999999999999999975 468899999999999987665
Q ss_pred chhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 241 RIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 241 ~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
....+.+.|+++.|+.++.++++.++..++++|.+++..+ ++.+..+.+.|+++.|++++.+.++.+++.|.++|.++.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 5444448999999999999999999999999999999865 477888999999999999999999999999999999998
Q ss_pred cCCC
Q 015988 321 DSPY 324 (397)
Q Consensus 321 ~~~~ 324 (397)
....
T Consensus 241 ~~~~ 244 (252)
T 4hxt_A 241 SGGW 244 (252)
T ss_dssp HTCB
T ss_pred cCCC
Confidence 6653
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=236.67 Aligned_cols=318 Identities=19% Similarity=0.203 Sum_probs=268.9
Q ss_pred ccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH--h-HHHHHHhhcC-CCh-hHHHHHHHHHHhhhc
Q 015988 37 SSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ--A-VQPLVLMLRA-PDS-DHESALLALLNLAVK 111 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~-v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~ 111 (397)
.....|.++.|+++|+++++.+|..|+.+|.+++.+.+ .+..+.. . ++.|++.|.+ ++. ++..|+.+|.+++.
T Consensus 9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~- 86 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH- 86 (644)
T ss_dssp ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-
T ss_pred hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-
Confidence 34678999999999999999999999999999998764 5554442 3 9999999986 343 68899999999998
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 112 DEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
+++++..+.+.|+++.|+.+|+++++.++..|+.+|.|++.++ ..+..+.+.|+++.|+.+|.++++.++..++.+|.+
T Consensus 87 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 87 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999875 566777789999999999999999999999999999
Q ss_pred hcC-CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHH
Q 015988 191 LST-HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHA 269 (397)
Q Consensus 191 Ls~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a 269 (397)
|+. +++++..+.+.|+++.|++++++.. ...++..++.+|+||+.+++++..++ +.|+++.|+.++.++++.+++.+
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~-~~g~l~~L~~ll~~~~~~~~~~a 244 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQRLVQNC 244 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHH-HTTHHHHHHTTTTCSCHHHHHHH
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhcCCHHHHHHH
Confidence 997 6788999999999999999998863 46778999999999999999998888 88999999999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCcc
Q 015988 270 VGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDG 347 (397)
Q Consensus 270 ~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~ 347 (397)
+++|.||+.... . . ....++++.|++++.+.++.+++.|+++|.+|+.... .+.++..++++.++..+... +.
T Consensus 245 ~~~L~nL~~~~~-~-~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~ 319 (644)
T 2z6h_A 245 LWTLRNLSDAAT-K-Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-GD 319 (644)
T ss_dssp HHHHHHHGGGCT-T-C--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH-TT
T ss_pred HHHHHHHhhcch-h-h--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc-CC
Confidence 999999998752 1 1 1124789999999999999999999999999987653 34556678888888655421 11
Q ss_pred chhh-HHHHHHHHHHHH
Q 015988 348 DEQS-GKAKKMLAEMVQ 363 (397)
Q Consensus 348 ~~~~-~~A~~~L~~l~~ 363 (397)
.+.. ..|..+|++|+.
T Consensus 320 ~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 320 REDITEPAICALRHLTS 336 (644)
T ss_dssp CHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHhc
Confidence 1234 889999999975
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=7.6e-26 Score=203.83 Aligned_cols=238 Identities=23% Similarity=0.334 Sum_probs=213.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
+.++.++++|+++++++|..|+++|.+++..+++.+..+.+. ++.|+.+|++++. ++..|+++|.+++..+++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 578999999999999999999999999999887787777764 9999999998444 7999999999999977999999
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhc-CCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-ch
Q 015988 119 IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSA-SSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PD 196 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~ 196 (397)
+.+.|+++.|+.+|++++++++..++++|.+++. +++++..+.+.|+++.|+++|.++++.++..++++|.+|+.. ++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999995 556888888999999999999999999999999999999985 45
Q ss_pred hHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015988 197 NLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMM 276 (397)
Q Consensus 197 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 276 (397)
.+..+.+.|+++.|++++.++ +..++..++.+|.||+...+.....+.+.|+++.|++++.++++.+++.|+++|.||
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 568888899999999999974 468899999999999986554444444899999999999999999999999999999
Q ss_pred hccCc
Q 015988 277 CQSDR 281 (397)
Q Consensus 277 ~~~~~ 281 (397)
+...+
T Consensus 240 ~~~~~ 244 (252)
T 4hxt_A 240 KSGGW 244 (252)
T ss_dssp HHTCB
T ss_pred HcCCC
Confidence 98763
No 25
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.6e-26 Score=208.93 Aligned_cols=235 Identities=20% Similarity=0.298 Sum_probs=209.1
Q ss_pred HHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-CCCchhhh
Q 015988 84 VQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSAS-SVNKPFIS 161 (397)
Q Consensus 84 v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~ 161 (397)
.+.++.+|++++ .++..|++.|.++...++.++..+.+.|+++.|+.+|++++++++..++.+|.+++.. ++++..+.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 678888888833 3588899999776555677888999999999999999999999999999999999984 56888899
Q ss_pred hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhH-HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc
Q 015988 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNL-SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG 240 (397)
Q Consensus 162 ~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~ 240 (397)
+.|+++.|+.+|.+++++++..|+++|.||+..++++ ..+.+.|+++.|+++++++ +..++..++++|.||+...+.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChH
Confidence 9999999999999999999999999999999998888 8888999999999999875 568899999999999986655
Q ss_pred chhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 241 RIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 241 ~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
....+.+.|+++.|+.++.++++.+++.++++|.+++..+ ++.+..+.+.|+++.|++++.++++.+++.|+++|.+++
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 4444448999999999999999999999999999999766 477888999999999999999999999999999999886
Q ss_pred c
Q 015988 321 D 321 (397)
Q Consensus 321 ~ 321 (397)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 4
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=1.8e-25 Score=223.32 Aligned_cols=316 Identities=18% Similarity=0.173 Sum_probs=265.4
Q ss_pred hhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhh
Q 015988 40 ASSAVHRALHLIQSD-DPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVKDEKN 115 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~ 115 (397)
..|+++.++++|.++ ++.++..|+.+|.+++..+ +++..+.+. ++.|+++|++++. ++..|+++|.+++..++..
T Consensus 57 ~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch
Confidence 348999999999765 8999999999999998864 577777764 9999999998443 7999999999999977788
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-CCCchhhhhcCCHHHHHHHHhcCC-HHHHHHHHHHHHhhcC
Q 015988 116 KIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSAS-SVNKPFISASGAIPLLVEILRYGS-QQAKFDAVMALSNLST 193 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~a~~aL~nLs~ 193 (397)
+..+.+.|+++.|+.++++++.+++..++.+|.+++.. ++++..+.+.|+++.|+.+|++++ ...+..++.+|.+|+.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999985 467888889999999999998765 4566778889999999
Q ss_pred CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 194 HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGAL 273 (397)
Q Consensus 194 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 273 (397)
.++++..+.+.|+++.|++++.++ +..++..++++|.||+........ ..|+++.|+.++.++++++++.++++|
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~---~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTTCTTCSC---CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCC--ChHHHHHHHHHHHHHhcCChhhHH---HHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999875 467889999999999987654332 358899999999999999999999999
Q ss_pred HHHhccCchhhHHHHHHcCChHHHHHHhhc--CCHHHHHHHHHHHHHhhcCC-CC----CcccCcCchHHHHHHhhccCc
Q 015988 274 LMMCQSDRCKYREPILREGVIPGLLELTIQ--GTPKSQTKARTLLQLLRDSP-YP----RSELQPDTLENIVCNIISQID 346 (397)
Q Consensus 274 ~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~-~~----~~~~~~~~~~~ll~~l~~~~~ 346 (397)
.+|+..+ ++.+..+.+.|+++.|++++.+ .++.+++.|+.+|.+++... .. ..+...++++.++..|. +..
T Consensus 291 ~~L~~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~ 368 (529)
T 1jdh_A 291 SNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH-PPS 368 (529)
T ss_dssp HHHTTTC-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS-TTC
T ss_pred HHHhcCC-HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhc-ccc
Confidence 9999876 4789999999999999999976 34799999999999997653 21 24555688888775443 222
Q ss_pred cchhhHHHHHHHHHHHH
Q 015988 347 GDEQSGKAKKMLAEMVQ 363 (397)
Q Consensus 347 ~~~~~~~A~~~L~~l~~ 363 (397)
..+..+.|..+|+++..
T Consensus 369 ~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLAL 385 (529)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhc
Confidence 11222778888888874
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=4e-26 Score=206.22 Aligned_cols=236 Identities=21% Similarity=0.323 Sum_probs=209.3
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~ 116 (397)
.....+.++++|+++++++|..|++.|.++...+++.+..+.+. ++.|+.+|++++. ++..|+++|.+++.++++++
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 34457899999999999999999999988777655666666653 9999999998443 79999999999999889999
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCc-hhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-
Q 015988 117 IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNK-PFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH- 194 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~- 194 (397)
..+.+.|+++.|+.+|+++++.++..++++|+|++.+++++ ..+.+.|+++.|+.+|.++++.++..|+++|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988877 7888999999999999999999999999999999985
Q ss_pred chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 195 PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVVEVLENGSLQAREHAVGAL 273 (397)
Q Consensus 195 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 273 (397)
++++..+.+.|+++.|++++.++ +..++..|+++|.||+...+ .+..+. +.|+++.|+.++.++++.+++.|+++|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 56677888899999999999875 56889999999999986554 444554 899999999999999999999999999
Q ss_pred HHHhc
Q 015988 274 LMMCQ 278 (397)
Q Consensus 274 ~~L~~ 278 (397)
.||+.
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 99985
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.94 E-value=3.1e-25 Score=227.33 Aligned_cols=321 Identities=18% Similarity=0.198 Sum_probs=260.2
Q ss_pred ccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-h-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcCh
Q 015988 37 SSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ-A-VQPLVLMLRAPDS-DHESALLALLNLAVKDE 113 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~ 113 (397)
.+.+.|+++.|+++|+++++.+|..|+.+|.+++..++..+..+.+ + ++.|+.+|++++. ++..++.+|.+++..++
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence 4457799999999999999999999999999999987677777765 3 9999999998544 46667789999998789
Q ss_pred hhHHHHHHcCChHHHHHhhCCCC-HHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHH---------------------
Q 015988 114 KNKIKIVEAGALEPIISFLQSPD-LNLQEYAAAALLTLSASSVNKPFISASGAIPLLVE--------------------- 171 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~--------------------- 171 (397)
+++..+.+.|+++.|+.+|++.+ ...+..++.+|+|++...+++..+.+.|+++.|+.
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998764 56788899999999988888888888777766654
Q ss_pred ------------------HHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHH
Q 015988 172 ------------------ILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIE 232 (397)
Q Consensus 172 ------------------lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 232 (397)
+|.+++++++..|+++|.+|+.. ++++..+.+.|+++.|++++.+..+...++..|+.+|.
T Consensus 253 ~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~ 332 (644)
T 2z6h_A 253 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332 (644)
T ss_dssp GGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 44556777888888888888875 46788888999999999999875433688999999999
Q ss_pred HhcCCcc----cchhhhhccCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCC--
Q 015988 233 SLVGFDE----GRIVLTSEEGGVLAVVEVLENGS-LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGT-- 305 (397)
Q Consensus 233 nL~~~~~----~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~-- 305 (397)
||+.... .+..+. +.|+++.|+++|.+++ +.+++.++++|.||+.++ +.+..+.+.|+++.|++++.+.+
T Consensus 333 nL~~~~~~~~~~q~~v~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~ 409 (644)
T 2z6h_A 333 HLTSRHQEAEMAQNAVR-LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQD 409 (644)
T ss_dssp HHTSSSTTHHHHHHHHH-HTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHH-HccChHHHHHHhCccCchHHHHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchh
Confidence 9987533 233344 7899999999999865 799999999999999875 56788999999999999997733
Q ss_pred --------------------HHHHHHHHHHHHHhhcCCCCCccc-CcCchHHHHHHhhccCccchhh-HHHHHHHHHHHH
Q 015988 306 --------------------PKSQTKARTLLQLLRDSPYPRSEL-QPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQ 363 (397)
Q Consensus 306 --------------------~~~~~~A~~~L~~l~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~ 363 (397)
..+++.++.+|++|+.++..+..+ ..++++.++.-+. ++.+.. ..|...|.++..
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY---SPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHHT
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHc---CCCHHHHHHHHHHHHHHHc
Confidence 456778888899998776654444 5678888775443 344445 778888888865
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=2.4e-24 Score=224.72 Aligned_cols=321 Identities=18% Similarity=0.216 Sum_probs=257.5
Q ss_pred ccchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-h-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcCh
Q 015988 37 SSSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ-A-VQPLVLMLRAPDS-DHESALLALLNLAVKDE 113 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~ 113 (397)
.+.+.|+++.|+++|+++++.++..|+.+|.+++...+..+..+.+ + ++.|+.+|++++. ++..++.+|.+++..++
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 3556799999999999999999999999999999987778888765 3 9999999998443 57888899999998889
Q ss_pred hhHHHHHHcCChHHHHHhhCCCCH-HHHHHHHHHHHHHhcCCCCchhhhhcCCHHH------------------------
Q 015988 114 KNKIKIVEAGALEPIISFLQSPDL-NLQEYAAAALLTLSASSVNKPFISASGAIPL------------------------ 168 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~------------------------ 168 (397)
+++..+.+.|+++.|+.+|+.++. ..+..++.+|++|+....++..+.+.|+++.
T Consensus 309 e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~ 388 (780)
T 2z6g_A 309 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 388 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 999999999999999999987654 4566788889998877777776666655544
Q ss_pred ---------------HHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHH
Q 015988 169 ---------------LVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIE 232 (397)
Q Consensus 169 ---------------L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 232 (397)
|+.+|++.+++++..|+++|.+|+.. ++++..+.+.|+++.|++++....+...++..|+.+|+
T Consensus 389 ~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~ 468 (780)
T 2z6g_A 389 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 468 (780)
T ss_dssp TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 44555667788889999999999886 46788888899999999999875333478999999999
Q ss_pred HhcCCccc----chhhhhccCcHHHHHHHHhcCC-HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCC--
Q 015988 233 SLVGFDEG----RIVLTSEEGGVLAVVEVLENGS-LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGT-- 305 (397)
Q Consensus 233 nL~~~~~~----~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~-- 305 (397)
||+..... +..+. +.|+++.|+.+|.+++ +.++..++++|.||+..+ ..+..+.+.|+++.|++++.+.+
T Consensus 469 nL~~~~~~~~~~~~~v~-~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 469 HLTSRHQDAEMAQNAVR-LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HTTSSSTTHHHHHHHHH-HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH--HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHH-HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH--HHHHHHHHCCCHHHHHHHHHhcchh
Confidence 99875433 33444 7899999999999876 599999999999999865 66788889999999999997643
Q ss_pred --------------------HHHHHHHHHHHHHhhcCCCCCccc-CcCchHHHHHHhhccCccchhh-HHHHHHHHHHHH
Q 015988 306 --------------------PKSQTKARTLLQLLRDSPYPRSEL-QPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQ 363 (397)
Q Consensus 306 --------------------~~~~~~A~~~L~~l~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~ 363 (397)
+.+++.++.+|.+|+.++..+..+ ..++++.++..+. ++.+.. ..|...|.++..
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~v~~~a~~aL~~L~~ 622 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY---SPIENIQRVAAGVLCELAQ 622 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGG---CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHc---CCCHHHHHHHHHHHHHHhc
Confidence 356778888999998766544444 5688888775443 344455 778888888763
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=4.9e-25 Score=229.96 Aligned_cols=316 Identities=18% Similarity=0.185 Sum_probs=267.1
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH---hHHHHHHhhcC-CCh-hHHHHHHHHHHhhhcChh
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ---AVQPLVLMLRA-PDS-DHESALLALLNLAVKDEK 114 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~---~v~~Lv~lL~~-~~~-~~~~a~~~L~~L~~~~~~ 114 (397)
..|.++.|+++|.++++.+|..|+.+|.+++... ..+..+.. .++.|+.+|+. .+. ++..|+.+|.+++. ++.
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~ 225 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HRE 225 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cch
Confidence 3788999999999999999999999999999865 45555542 39999999975 343 69999999999998 577
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 115 NKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
++..+.+.|+++.|+.+|+++++.++..|+.+|.||+.+. ..+..+.+.|+++.|+.+|.+++..++..++.+|.+|+.
T Consensus 226 ~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 226 GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999875 556677789999999999999999999999999999997
Q ss_pred -CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHH
Q 015988 194 -HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGA 272 (397)
Q Consensus 194 -~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~ 272 (397)
+++++..+.+.|+++.|++++++.. .......++.+|.+|+...+++..++ +.|+++.|+.++.++++.+++.++++
T Consensus 306 ~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~-~~g~l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 306 GNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp TCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSTTHHHHHH-HTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHHHHHHH-HhchHHHHHHHHcCCchHHHHHHHHH
Confidence 4788888999999999999999863 45667789999999999888888887 88999999999999999999999999
Q ss_pred HHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC--CCcccCcCchHHHHHHhhccCccchh
Q 015988 273 LLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--PRSELQPDTLENIVCNIISQIDGDEQ 350 (397)
Q Consensus 273 L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~ 350 (397)
|.+|+.... . .....++++.|++++.+.++.+++.|+++|.+|+.... .+.++..++++.++..|.... ..+.
T Consensus 384 L~~L~~~~~-~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~ 458 (780)
T 2z6g_A 384 LRNLSDAAT-K---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-DRED 458 (780)
T ss_dssp HHHHHTTCT-T---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHT-TCHH
T ss_pred HHHHhccch-h---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccC-CHHH
Confidence 999998752 1 11225689999999999999999999999999987653 445667789999887664211 2223
Q ss_pred h-HHHHHHHHHHHHH
Q 015988 351 S-GKAKKMLAEMVQV 364 (397)
Q Consensus 351 ~-~~A~~~L~~l~~~ 364 (397)
. ..|..+|++|...
T Consensus 459 v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 459 ITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 4 8899999998753
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=9e-25 Score=193.12 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=171.1
Q ss_pred HHHHHHhhcC-CC--hhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-CCCchh
Q 015988 84 VQPLVLMLRA-PD--SDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSAS-SVNKPF 159 (397)
Q Consensus 84 v~~Lv~lL~~-~~--~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~ 159 (397)
++.+|++|++ .. .++..|++.|.+++..++.+|..+++.|+||+|+.+|+++++++++.|+++|+||+.. +++|..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 8999999998 33 3578899999999988999999999999999999999999999999999999999985 579999
Q ss_pred hhhcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhh---hcc-----------cChHHH
Q 015988 160 ISASGAIPLLVEILRY-GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLI---FCK-----------KSSKTA 224 (397)
Q Consensus 160 i~~~g~i~~L~~lL~~-~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~---~~~-----------~~~~~~ 224 (397)
+.+.|+++.|+++|.+ ++.+++++|+.+|+||+..++++..|++. +++.|++++. ++. .+..++
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 9999999999999984 79999999999999999999999999874 6999998763 111 245889
Q ss_pred HHHHHHHHHhcCC-cccchhhhhccCcHHHHHHHHhcC------CHHHHHHHHHHHHHHhcc
Q 015988 225 EKCTSLIESLVGF-DEGRIVLTSEEGGVLAVVEVLENG------SLQAREHAVGALLMMCQS 279 (397)
Q Consensus 225 ~~a~~~L~nL~~~-~~~~~~~~~~~g~i~~Lv~lL~~~------~~~v~~~a~~~L~~L~~~ 279 (397)
+.|.++|+||+.. +++|+.+....|+|+.|+.+++.. +...+|.|+.+|+||++.
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999875 588888875567899999999852 467899999999999975
No 32
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=2.7e-24 Score=190.07 Aligned_cols=195 Identities=20% Similarity=0.266 Sum_probs=171.4
Q ss_pred hhHHHHHHHhcCCCH--HHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhH
Q 015988 42 SAVHRALHLIQSDDP--DLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPD-SDHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~--~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~ 116 (397)
-.++.++++|+++++ ++|..|+.+|.+++.+++++|..+.+. ||.||++|++++ .+++.|+++|.+++.+++++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 458899999999988 899999999999999888899888874 999999999843 479999999999999889999
Q ss_pred HHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh---c-------------CCHH
Q 015988 117 IKIVEAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR---Y-------------GSQQ 179 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~---~-------------~~~~ 179 (397)
..|.+.|+|++|+.+|+ +++.++++.++.+||||+..+++|..+.+. +++.|+.++. + .+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 578999999999999999999999998874 6999988652 1 2679
Q ss_pred HHHHHHHHHHhhcCC-chhHHHHHhC-CChHHHHHHhhhc----ccChHHHHHHHHHHHHhcCC
Q 015988 180 AKFDAVMALSNLSTH-PDNLSIILGT-NPIPSIVDLLIFC----KKSSKTAEKCTSLIESLVGF 237 (397)
Q Consensus 180 ~~~~a~~aL~nLs~~-~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~nL~~~ 237 (397)
++++|.++|+||+.. +++|+.+.+. |+|+.|+.+++.. ..+.+.++.|+.+|+||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999985 5899999985 6789999999874 23467899999999999864
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=4.6e-23 Score=180.92 Aligned_cols=198 Identities=20% Similarity=0.298 Sum_probs=176.8
Q ss_pred HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC-CCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CchhH
Q 015988 121 EAGALEPIISFLQSPDLNLQEYAAAALLTLSAS-SVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST-HPDNL 198 (397)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~-~~~~~ 198 (397)
..|+.++|+.+|++++++++..|+++|.+++.. ++++..+.+.|+++.|+.+|.+++++++..|+++|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 467899999999999999999999999999954 4678888899999999999999999999999999999996 56788
Q ss_pred HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 199 SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 199 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
..+.+.|+++.|+++++++ +..++..|+++|.||+...+.....+.+.|+++.|+.++.++++.+++.++++|.|++.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999886 46889999999999997665544333489999999999999999999999999999999
Q ss_pred cCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 279 SDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 279 ~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
.+ ++.+..+.+.|+++.|++++.+.++.+++.|.++|.+++.
T Consensus 168 ~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SC-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CC-cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 86 4778889999999999999999999999999999999864
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-22 Score=204.71 Aligned_cols=320 Identities=13% Similarity=0.107 Sum_probs=252.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh---HHHHHHhhcC-CC-hhHHHHHHHHHHhhhcChh-
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA---VQPLVLMLRA-PD-SDHESALLALLNLAVKDEK- 114 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~---v~~Lv~lL~~-~~-~~~~~a~~~L~~L~~~~~~- 114 (397)
....+.+++.|..++...+..|++.|..++... +.|+.+.+. ++.|+.+++. .+ .+...++.+|.|++...+.
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 346677888888877777999999999998764 888888873 9999999995 33 3688899999999873321
Q ss_pred -------------------------------------hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCc
Q 015988 115 -------------------------------------NKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNK 157 (397)
Q Consensus 115 -------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~ 157 (397)
++..+.+.|++++|+.+++++++.+++.++++|.||+.+.++|
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 4667788999999999999999999999999999999999999
Q ss_pred hhhhhcCCHHHHHHHHhcCCHH---HHHHHHHHHHhhcCCchhHHHHHh---CCChHHHHHHhhhcccC-----------
Q 015988 158 PFISASGAIPLLVEILRYGSQQ---AKFDAVMALSNLSTHPDNLSIILG---TNPIPSIVDLLIFCKKS----------- 220 (397)
Q Consensus 158 ~~i~~~g~i~~L~~lL~~~~~~---~~~~a~~aL~nLs~~~~~~~~i~~---~g~i~~Lv~ll~~~~~~----------- 220 (397)
..+++.|+++.|+.+|.+++.. .+..|+.+|.+|+...+....+.. .|++++|+++|..++..
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999988655 899999999999865444433321 48999999999832111
Q ss_pred h-HHHHHHHHHHHHhcCCcc-----cchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhH-HHHHHc--
Q 015988 221 S-KTAEKCTSLIESLVGFDE-----GRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYR-EPILRE-- 291 (397)
Q Consensus 221 ~-~~~~~a~~~L~nL~~~~~-----~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r-~~i~~~-- 291 (397)
+ .-...|+.+|.||+..++ .+..++.+.|+++.|.++|.+++..++..|+++++||+.++ +.+ +.+...
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~~~ 649 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNLEN 649 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCCSS
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhhcC
Confidence 1 125799999999998873 36777733599999999999999999999999999999865 443 344322
Q ss_pred ----CChHHHHHHhhcCCHHHHHHHHHHHHHhh-cCCC-CCcccCc-CchHHHHHHhhccCccchhhHHHHHHHHHHHH
Q 015988 292 ----GVIPGLLELTIQGTPKSQTKARTLLQLLR-DSPY-PRSELQP-DTLENIVCNIISQIDGDEQSGKAKKMLAEMVQ 363 (397)
Q Consensus 292 ----g~v~~L~~ll~~~~~~~~~~A~~~L~~l~-~~~~-~~~~~~~-~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~ 363 (397)
+.++.|+.++..++..+|++|.++|.+++ .++. ++.++.. +++..++..+..+.+..+-...+.-++.||..
T Consensus 650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 24889999999999999999999999995 5554 6777776 68888876554332333223778889999986
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1.6e-21 Score=171.00 Aligned_cols=196 Identities=21% Similarity=0.312 Sum_probs=174.6
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhh
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVKDEKN 115 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~ 115 (397)
...+..+.|+.+|+++++.+|..|+++|.+++..+++.+..+.+. ++.|+++|++++. ++..|+++|.+++.+++.+
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 345677899999999999999999999999998887888777764 9999999998443 7999999999999888999
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 015988 116 KIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~ 194 (397)
+..+.+.|+++.|+.+|+++++.++..++++|+|++..+ +.+..+.+.|+++.|+++|.+++++++..|+++|.||+..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999755 4566778999999999999999999999999999999987
Q ss_pred -chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcC
Q 015988 195 -PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG 236 (397)
Q Consensus 195 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~ 236 (397)
++++..+.+.|+++.|++++.+. +..+++.|+.+|.+|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHhc
Confidence 77788888999999999999874 56899999999999975
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.1e-21 Score=192.04 Aligned_cols=319 Identities=13% Similarity=0.120 Sum_probs=245.9
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHH
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKI 117 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~ 117 (397)
+...++++|.+.+++ ..+|..|+..|+++...+......+.+..+.++.+|..++. .+..|++.|..++. +++.|.
T Consensus 293 I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe 369 (778)
T 3opb_A 293 ITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKI 369 (778)
T ss_dssp HHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHH
T ss_pred HHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHH
Confidence 466788899998865 57899999999998876533222333447777888877443 48899999999998 688888
Q ss_pred HHHHc-CChHHHHHhhCC-CCHHHHHHHHHHHHHHhcCCC---------------------------------------C
Q 015988 118 KIVEA-GALEPIISFLQS-PDLNLQEYAAAALLTLSASSV---------------------------------------N 156 (397)
Q Consensus 118 ~i~~~-g~i~~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~---------------------------------------~ 156 (397)
.+.+. |.++.|+.+++. ++..+...++.+|.|++.+.+ +
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~ 449 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN 449 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence 88875 669999999995 777889999999999986332 2
Q ss_pred chhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccC-hHHHHHHHHHHHHhc
Q 015988 157 KPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKS-SKTAEKCTSLIESLV 235 (397)
Q Consensus 157 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~~~a~~~L~nL~ 235 (397)
+..+.+.|+++.|+.+++++++.++..|+++|.||+.++++|..+++.|+++.|++++.+..+. ......|+.+|++|.
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999886432 236789999999997
Q ss_pred CCcccchhhhh--ccCcHHHHHHHHhc-CC-H------------HHHHHHHHHHHHHhccCc---hhhHHHHHHc-CChH
Q 015988 236 GFDEGRIVLTS--EEGGVLAVVEVLEN-GS-L------------QAREHAVGALLMMCQSDR---CKYREPILRE-GVIP 295 (397)
Q Consensus 236 ~~~~~~~~~~~--~~g~i~~Lv~lL~~-~~-~------------~v~~~a~~~L~~L~~~~~---~~~r~~i~~~-g~v~ 295 (397)
...+....+-. ..|+|++|+.+|.. +. . --+..|+.+|.||+..++ ++.|..|+++ |+++
T Consensus 530 is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~ 609 (778)
T 3opb_A 530 IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS 609 (778)
T ss_dssp HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHH
T ss_pred hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHH
Confidence 55443332210 13899999999972 11 1 226789999999999863 2568888985 9999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhcCCCC--CcccCcC------chHHHHHHhhccCccchhh-HHHHHHHHHHHH
Q 015988 296 GLLELTIQGTPKSQTKARTLLQLLRDSPYP--RSELQPD------TLENIVCNIISQIDGDEQS-GKAKKMLAEMVQ 363 (397)
Q Consensus 296 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~~~~------~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~ 363 (397)
.|..++.++++.+|++|+++++|+..++.. ++.+..+ ++..++ .|. +. +.... +.|..+|.++..
T Consensus 610 ~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV-~Ll-~s-~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 610 TIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILV-KLL-QL-SDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHH-HGG-GC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHH-HHH-cC-CCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988764 3555433 244454 343 22 33344 778888888854
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=2e-20 Score=172.22 Aligned_cols=222 Identities=15% Similarity=0.114 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHH-HHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhh
Q 015988 138 NLQEYAAAALLTLSASSVNKPFISASGAIPLLVE-ILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLI 215 (397)
Q Consensus 138 ~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~ 215 (397)
+-+..|+..|.++..+.++...+...|+++.|+. +|.++++.++..|+++|.+++.+ +..+..+++.|+++.|+.+|+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 4677889999999987788888999999999999 99999999999999999999986 567788899999999999998
Q ss_pred hcccChHHHHHHHHHHHHhcCCccc-chhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCCh
Q 015988 216 FCKKSSKTAEKCTSLIESLVGFDEG-RIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVI 294 (397)
Q Consensus 216 ~~~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v 294 (397)
++ ++..+++.|+++|.||+.+... ...+. +.|+++.|+.+|+++++.++..|+++|.+++..+ ++.+..+++.|++
T Consensus 135 ~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-~~~~~~vv~~g~i 211 (296)
T 1xqr_A 135 RD-ACDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHKGTLCSMGMV 211 (296)
T ss_dssp HC-SCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHTTHH
T ss_pred cC-CCHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-hHHHHHHHHcCCH
Confidence 74 2467899999999999986654 44555 7899999999999999999999999999999886 5789999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhcCCC-CCcccCc--CchHHHHHH----hhccCccchhhHHHHHHHHHHH
Q 015988 295 PGLLELTIQGTPKSQTKARTLLQLLRDSPY-PRSELQP--DTLENIVCN----IISQIDGDEQSGKAKKMLAEMV 362 (397)
Q Consensus 295 ~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~--~~~~~ll~~----l~~~~~~~~~~~~A~~~L~~l~ 362 (397)
+.|+.+|.+.++.+++.|+.+|.+|..... ....+.. ..+..++.. |-.+..+.+.-++|..++.+..
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999977632 1111111 223333322 2112223333377777777664
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=3.6e-20 Score=170.47 Aligned_cols=220 Identities=19% Similarity=0.158 Sum_probs=179.0
Q ss_pred HHHHHHHHHHhhhcChhhHHHHHHcCChHHHHH-hhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhc
Q 015988 98 HESALLALLNLAVKDEKNKIKIVEAGALEPIIS-FLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRY 175 (397)
Q Consensus 98 ~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~ 175 (397)
+..|+..|.+++. +.++...+.+.|++++|+. +|.+++++++..|+++|.+++.++ .++..+.+.|+++.|+.+|.+
T Consensus 57 k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 57 REGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 7778899999998 6778889999999999999 999999999999999999999876 478888899999999999996
Q ss_pred C-CHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHH
Q 015988 176 G-SQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVL 252 (397)
Q Consensus 176 ~-~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~ 252 (397)
+ +..++..|+|+|.||+.+ +...+.+.+.|+++.|+.+|+++ +..++..|+++|.+|+.... .+..++ +.|+++
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv-~~g~i~ 212 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLC-SMGMVQ 212 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHH-HTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHH-HcCCHH
Confidence 4 899999999999999986 45567888899999999999885 56899999999999977544 555555 899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHc-CChHHH----HHHhh-cC-CHHHHHHHHHHHHHhhcC
Q 015988 253 AVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILRE-GVIPGL----LELTI-QG-TPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 253 ~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~-g~v~~L----~~ll~-~~-~~~~~~~A~~~L~~l~~~ 322 (397)
.|+.+|.++++.+++.++.+|.+|+... ......+... ..+..+ ++-+. .. +..+.++|..++..+-..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~-~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDF-PQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTC-HHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCC-hhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999875 2333333221 122222 23333 22 467788888888877543
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.64 E-value=1.5e-14 Score=142.60 Aligned_cols=335 Identities=13% Similarity=0.165 Sum_probs=240.4
Q ss_pred ccchhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHhhhChHHHHHHHH-hHHHHHHhhcC--CCh-hHHHHHHHHHHhhhc
Q 015988 37 SSSASSAVHRALHLIQSDD-PDLKLEAAREIRRLTKTSQRCRRQLAQ-AVQPLVLMLRA--PDS-DHESALLALLNLAVK 111 (397)
Q Consensus 37 ~~~~~~~l~~lv~lL~s~~-~~~~~~a~~~L~~l~~~~~~~~~~l~~-~v~~Lv~lL~~--~~~-~~~~a~~~L~~L~~~ 111 (397)
.......++.|+..+.+.. .+.|+.|+..|..+++ +.+..+.. +++.|+..|+. .|. +...++.+|.++...
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk---~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT---TTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 3456788999999998664 5899999999999975 45556655 49999999987 444 577788899887654
Q ss_pred Chh-----------------hHHHH-HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC--Cchhhh-hcCCHHHHH
Q 015988 112 DEK-----------------NKIKI-VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSV--NKPFIS-ASGAIPLLV 170 (397)
Q Consensus 112 ~~~-----------------~~~~i-~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~-~~g~i~~L~ 170 (397)
++. +...+ .+.+.++.|+.+|+..+..++..++..|..|+...+ .+..+. .+++++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 332 11223 346889999999999999999999999999987653 577777 579999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCchhHHHHH-hCCChHHHHHHhhhcc--cChHHHHHHHHHHHHhcCCcccchhhhhc
Q 015988 171 EILRYGSQQAKFDAVMALSNLSTHPDNLSIIL-GTNPIPSIVDLLIFCK--KSSKTAEKCTSLIESLVGFDEGRIVLTSE 247 (397)
Q Consensus 171 ~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 247 (397)
.+|.+....+|..++..|.+|+.++.+.+.++ .+|+++.|++++.... +...++..|+.+|.||..++.....++.+
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999866655555 5899999999998742 23568899999999998887644444559
Q ss_pred cCcHHHHHHHHhcCCH-------HH--HHHHHHHHHHHhccCc-----hhhHHHHHHcCChHHHHHHhhcC--CHHHHHH
Q 015988 248 EGGVLAVVEVLENGSL-------QA--REHAVGALLMMCQSDR-----CKYREPILREGVIPGLLELTIQG--TPKSQTK 311 (397)
Q Consensus 248 ~g~i~~Lv~lL~~~~~-------~v--~~~a~~~L~~L~~~~~-----~~~r~~i~~~g~v~~L~~ll~~~--~~~~~~~ 311 (397)
.|+++.|..+|+.+++ .+ ...++.++.-++..+. ..++..+.+.|+++.|++++... ...++..
T Consensus 253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~ 332 (651)
T 3grl_A 253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE 332 (651)
T ss_dssp TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence 9999999999975431 22 2236667777766531 35688999999999999998875 5678888
Q ss_pred HHHHHHHhhcC-CCCCcccCcC------chHHHHH---HhhccCccchhh-HHHHHHHHHHHHHhHHHhHHHHHh
Q 015988 312 ARTLLQLLRDS-PYPRSELQPD------TLENIVC---NIISQIDGDEQS-GKAKKMLAEMVQVSMEQSLRHLQQ 375 (397)
Q Consensus 312 A~~~L~~l~~~-~~~~~~~~~~------~~~~ll~---~l~~~~~~~~~~-~~A~~~L~~l~~~~~~~~~~~~~~ 375 (397)
|..++..+..+ +..|..|..- ..+.++. .+..... .-.. -.|...++..+....+....-+..
T Consensus 333 Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~-~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~ 406 (651)
T 3grl_A 333 TINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ-PFVLRCAVLYCFQCFLYKNQKGQGEIVST 406 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 88888776544 4355444321 1222332 2221111 1122 456678887776665444433333
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=2.5e-13 Score=133.96 Aligned_cols=288 Identities=13% Similarity=0.087 Sum_probs=221.6
Q ss_pred CCCCCccchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChH-----------------HHHHHHH-h--HHHHHH
Q 015988 32 SFSSSSSSASSAVHRALHLIQSD--DPDLKLEAAREIRRLTKTSQR-----------------CRRQLAQ-A--VQPLVL 89 (397)
Q Consensus 32 ~~~~~~~~~~~~l~~lv~lL~s~--~~~~~~~a~~~L~~l~~~~~~-----------------~~~~l~~-~--v~~Lv~ 89 (397)
+...+..+..++++.|+..|+.+ |.++...++.+|.++...+++ +.+.+.+ . |+.|+.
T Consensus 50 sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~ 129 (651)
T 3grl_A 50 SKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLS 129 (651)
T ss_dssp TTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHH
T ss_pred HHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHH
Confidence 33445567889999999999865 778888999999887764422 1122322 1 999999
Q ss_pred hhcCCCh-hHHHHHHHHHHhhhcChh-hHHHHHHc-CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhh-hhcCC
Q 015988 90 MLRAPDS-DHESALLALLNLAVKDEK-NKIKIVEA-GALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFI-SASGA 165 (397)
Q Consensus 90 lL~~~~~-~~~~a~~~L~~L~~~~~~-~~~~i~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i-~~~g~ 165 (397)
+|++.+. ++..++..|..++..++. ++..|... ++++.|+.+|++..+.+|..++.+|.+|+.++....++ .-.|+
T Consensus 130 lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEna 209 (651)
T 3grl_A 130 LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENA 209 (651)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 9998665 789999999999988877 88889865 99999999999999999999999999999988654444 46799
Q ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccC----h-H--HHHHHHHHHHH
Q 015988 166 IPLLVEILRYGS----QQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKS----S-K--TAEKCTSLIES 233 (397)
Q Consensus 166 i~~L~~lL~~~~----~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~----~-~--~~~~a~~~L~n 233 (397)
++.|+.++..+. ..+...++.+|.||... ..|+..+.+.|+++.|..++....+. . + -+..++.++.-
T Consensus 210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrl 289 (651)
T 3grl_A 210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRV 289 (651)
T ss_dssp HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence 999999998744 47889999999999986 56899999999999999999754221 1 2 22336777777
Q ss_pred hcCCc-------ccchhhhhccCcHHHHHHHHhcC--CHHHHHHHHHHHHHHhccCchhhHHHHHHcC-----ChHHHHH
Q 015988 234 LVGFD-------EGRIVLTSEEGGVLAVVEVLENG--SLQAREHAVGALLMMCQSDRCKYREPILREG-----VIPGLLE 299 (397)
Q Consensus 234 L~~~~-------~~~~~~~~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g-----~v~~L~~ 299 (397)
|+... .++..+. +.|+++.|++++..+ ...++..|+.++..+.+++ ...++.+.+.. ..|.++.
T Consensus 290 Lv~~~~~~~~t~~nQ~~~~-~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN-~~~Q~~fa~~~vp~~~~~p~li~ 367 (651)
T 3grl_A 290 LVSPNNPPGATSSCQKAMF-QCGLLQQLCTILMATGVPADILTETINTVSEVIRGC-QVNQDYFASVNAPSNPPRPAIVV 367 (651)
T ss_dssp HTCTTSCHHHHHHHHHHHH-HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHCEESSSSCEEHHHH
T ss_pred HhCCCCCCCCCHHHHHHHH-HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC-HHHHHHHhhccCCCCCCcChHHH
Confidence 75542 2455666 899999999999875 4789999999999999988 57888887632 2334444
Q ss_pred ----Hhhc-CCHHHHHHHHHHHHHhhc
Q 015988 300 ----LTIQ-GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 300 ----ll~~-~~~~~~~~A~~~L~~l~~ 321 (397)
++.+ ....+|-.|+.++..+..
T Consensus 368 lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 368 LLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 3444 345778778888877743
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.41 E-value=4.3e-11 Score=109.16 Aligned_cols=228 Identities=12% Similarity=0.045 Sum_probs=174.2
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
+...++.|++.|.++++.+|..|++.|..+.. ...++.|+.+|++++. ++..|+++|..+..... ....
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~~~~ 90 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-CEDN 90 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-THHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-cchH
Confidence 45678999999999999999999999998862 1247889999988554 68899999999875222 1111
Q ss_pred HHHcCChHHHH-HhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchh
Q 015988 119 IVEAGALEPII-SFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 119 i~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
.++.|. .+++++++.++..++.+|.++...+. ......++.|+..|.++++.++..|+.+|.++..
T Consensus 91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 223333 24567899999999999999874321 1134568899999999999999999999998754
Q ss_pred HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 198 LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
.+.++.|+.++.++ +..++..++.+|.++... ....++.|+.++.++++.++..++.+|..+.
T Consensus 158 ------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDP--NGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -------CCHHHHHHHHTCS--SHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHcCC--CHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 35789999999874 467889999999887321 2356789999999999999999999999886
Q ss_pred ccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 278 QSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 278 ~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
. ...++.|++.+.+.+ ++..|..+|..+..
T Consensus 221 ~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 221 D------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp C------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred C------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2 236888888887643 88899999988754
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.34 E-value=2.9e-11 Score=127.51 Aligned_cols=312 Identities=11% Similarity=0.119 Sum_probs=209.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH------HHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcCh
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQ------LAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDE 113 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~------l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~ 113 (397)
.+.++.+++.+.++++..+..++.+|..++...+..-.. +...++.+++.+++++. ++..|+++|..+....+
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 356888899998889999999999999998754332111 22237888888877443 78899999998876433
Q ss_pred hhHHHHHH--cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015988 114 KNKIKIVE--AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNL 191 (397)
Q Consensus 114 ~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nL 191 (397)
. .+.. .+.++.|+.++.+++++++..++.+|..++......-.-.-.+.++.++..+.+.++.++..|+.++..+
T Consensus 207 ~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 Q---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp H---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 2 1111 2467888888999999999999999999986432110001134778888888889999999999999999
Q ss_pred cCCchhHHHHHh--CCChHHHHHHhh----------hc---c-------cChHHHHHHHHHHHHhcCCcccchhhhhccC
Q 015988 192 STHPDNLSIILG--TNPIPSIVDLLI----------FC---K-------KSSKTAEKCTSLIESLVGFDEGRIVLTSEEG 249 (397)
Q Consensus 192 s~~~~~~~~i~~--~g~i~~Lv~ll~----------~~---~-------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g 249 (397)
+.....+..+.. ...++.++..+. .+ + ....++..+..+|..++.... ..++ ..
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~--~~ 359 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL--PH 359 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH--HH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH--HH
Confidence 876543332221 134555555552 11 0 112356677778877765432 1222 24
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC--CCCc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSP--YPRS 327 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~--~~~~ 327 (397)
.++.+..++.+++..+|+.|+.+|.+++........ . .-.++++.+++.+.+.++.+|..|++++..++... ....
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-P-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG-G-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH-H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence 677888888888999999999999999987632111 1 12567899999999999999999999999887532 1122
Q ss_pred ccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHH
Q 015988 328 ELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQV 364 (397)
Q Consensus 328 ~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~ 364 (397)
.+....++.++..+. +..... +.|...|.++++.
T Consensus 438 ~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 438 TYLKPLMTELLKRIL---DSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp TTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHH
Confidence 223345555554443 233344 7788888887754
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.32 E-value=3e-10 Score=98.17 Aligned_cols=187 Identities=21% Similarity=0.227 Sum_probs=156.2
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhH
Q 015988 38 SSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~ 116 (397)
....+..+.+++.|+++++.+|..|+..|..+... ..++.|+++|.+++. ++..|++.|..+..
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~---------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE---------RAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh---------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 35668899999999999999999999999887641 348899999988544 68889999888753
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCch
Q 015988 117 IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPD 196 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~ 196 (397)
...++.|+..|.++++.++..++.+|..+.. ...++.|+.+|.++++.++..|+++|..+..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2568999999999999999999999998742 4578999999999999999999999998753
Q ss_pred hHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015988 197 NLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMM 276 (397)
Q Consensus 197 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 276 (397)
.+.++.|..++.+. +..++..|+.+|..+. ....++.|..++.++++.++..|..+|..+
T Consensus 137 -------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE--DGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35678899999764 5678899999999872 345788999999999999999999999887
Q ss_pred h
Q 015988 277 C 277 (397)
Q Consensus 277 ~ 277 (397)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.30 E-value=2.8e-10 Score=99.17 Aligned_cols=189 Identities=21% Similarity=0.223 Sum_probs=155.0
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHH
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKI 117 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~ 117 (397)
.+...++.|++.|.++++.+|..|+..|..+... +.++.|+.+|.+++. ++..|+++|..+..
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~---------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE---------RAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc---------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3567899999999999999999999999887541 348899999988554 78889999988753
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchh
Q 015988 118 KIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
.+.++.|+.+|.++++.++..++.+|..+.. .+.++.|+.+|.++++.++..|+.+|.++..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 3568999999999999999999999998842 4578999999999999999999999998743
Q ss_pred HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 198 LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
...++.|..++.+. +..++..+..+|..+. ...+++.|..++.++++.++..|..+|.++.
T Consensus 142 ------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDE--DGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp ------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred ------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 24678899998664 5678899999999872 3457889999999999999999999999998
Q ss_pred ccC
Q 015988 278 QSD 280 (397)
Q Consensus 278 ~~~ 280 (397)
...
T Consensus 203 ~~~ 205 (211)
T 3ltm_A 203 SFN 205 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 765
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.27 E-value=3.8e-10 Score=98.33 Aligned_cols=185 Identities=19% Similarity=0.173 Sum_probs=151.1
Q ss_pred HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh
Q 015988 84 VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA 162 (397)
Q Consensus 84 v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 162 (397)
++.|+..|++++. ++..|+..|..+.. .+.++.|+.+|.++++.++..++.+|..+. .
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~ 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----------D 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----------C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------C
Confidence 8999999988544 68888888887643 357899999999999999999999998874 2
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccch
Q 015988 163 SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRI 242 (397)
Q Consensus 163 ~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 242 (397)
.+.++.|+.+|.++++.++..|+.+|..+.. .+.++.|+.++.++ +..++..++.+|.++.
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~------- 140 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG------- 140 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC-------
Confidence 4678999999999999999999999998753 34678899988764 5678899999999862
Q ss_pred hhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 243 VLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 243 ~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
....++.|..++.++++.++..++.+|..+.. ..+++.|.+++.+.++.+|..|..+|..+..+
T Consensus 141 ----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 141 ----DERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 24578999999999999999999999999853 12577889999999999999999999988765
Q ss_pred CC
Q 015988 323 PY 324 (397)
Q Consensus 323 ~~ 324 (397)
..
T Consensus 205 ~~ 206 (211)
T 3ltm_A 205 NH 206 (211)
T ss_dssp --
T ss_pred CC
Confidence 43
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.19 E-value=1.7e-09 Score=93.37 Aligned_cols=181 Identities=19% Similarity=0.175 Sum_probs=151.1
Q ss_pred HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh
Q 015988 84 VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA 162 (397)
Q Consensus 84 v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 162 (397)
.+.++++|++++. ++..|+..|..+.. .+.++.|+.+|.++++.++..++.+|..+. .
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----------~ 74 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----------D 74 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------C
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------C
Confidence 7889999998554 78889999987653 256899999999999999999999998874 2
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccch
Q 015988 163 SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRI 242 (397)
Q Consensus 163 ~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~ 242 (397)
...++.|+.+|.++++.++..|+++|..+.. ...++.|+.++.+. +..++..++.+|.++.
T Consensus 75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~------- 135 (201)
T 3ltj_A 75 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG------- 135 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-------
Confidence 4678999999999999999999999998753 24678899988764 5678899999999863
Q ss_pred hhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 243 VLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 243 ~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
....++.|+.++.++++.++..|+.+|..+.. + .+++.|.+++.+.++.+|..|..+|..+.
T Consensus 136 ----~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 ----DERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999842 1 25778888999999999999999998764
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.19 E-value=3.1e-09 Score=96.75 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=167.3
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHH-hhcCCCh-hHHHHHHHHHHhhhcChhhHH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVL-MLRAPDS-DHESALLALLNLAVKDEKNKI 117 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~-lL~~~~~-~~~~a~~~L~~L~~~~~~~~~ 117 (397)
....++.+++++.++++.+|..|+.+|..+...... +...++.|.. ++++++. ++..++++|..+...++...
T Consensus 52 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~----~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~- 126 (280)
T 1oyz_A 52 GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC----EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS- 126 (280)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-
Confidence 346788999999999999999999999988743321 1122444443 3445443 68999999999985443222
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchh
Q 015988 118 KIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
...++.|+..++++++.++..++.+|.++.. .+.++.|+.++.++++.++..|+++|..+.....
T Consensus 127 ----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~- 191 (280)
T 1oyz_A 127 ----PKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS- 191 (280)
T ss_dssp ----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-
T ss_pred ----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-
Confidence 2357889999999999999999999987743 4589999999999999999999999998853321
Q ss_pred HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 198 LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
.+++.|+.++.+. +..++..++.+|.++. +...++.|+.++.+++ ++..++.+|..+.
T Consensus 192 -------~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 192 -------DIRDCFVEMLQDK--NEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp -------HHHHHHHHHTTCS--CHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred -------HHHHHHHHHhcCC--CHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 3467888888764 4678899999999763 3468899999998755 8888999998875
Q ss_pred ccCchhhHHHHHHcCChHHHHHHhhc-CCHHHHHHHHHHHH
Q 015988 278 QSDRCKYREPILREGVIPGLLELTIQ-GTPKSQTKARTLLQ 317 (397)
Q Consensus 278 ~~~~~~~r~~i~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~ 317 (397)
. ...++.|.+++.+ .++.....+...|.
T Consensus 250 ~------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 250 D------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp C------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred c------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 3 1468889998865 45666666666553
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.17 E-value=1.6e-09 Score=114.32 Aligned_cols=332 Identities=11% Similarity=0.006 Sum_probs=208.4
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH-HHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQR-CRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~-~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
...++.+.+.+.+.++.+|..|+.+|..++....+ ....+.+.++.++..+++++. ++..|+++|.+++.........
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence 35677777888888999999999999999987643 222333348999999988444 7888999999998632211111
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----
Q 015988 119 IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST----- 193 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~----- 193 (397)
..-.+.++.|+..+.+.++.++..|+.+|.+++......-.-.-.+.++.|+.+++..+.+....++.++..++.
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 112356788888998889999999999999998533211111125667777778776665554444444444431
Q ss_pred ----------------------C--chhH------HHHHh---CCC-------hHHHHHHhhhc---------------c
Q 015988 194 ----------------------H--PDNL------SIILG---TNP-------IPSIVDLLIFC---------------K 218 (397)
Q Consensus 194 ----------------------~--~~~~------~~i~~---~g~-------i~~Lv~ll~~~---------------~ 218 (397)
+ ++.+ ..+.. .+. ++.+++++... .
T Consensus 518 ~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~ 597 (852)
T 4fdd_A 518 LNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597 (852)
T ss_dssp GCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCC
T ss_pred hccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCC
Confidence 0 0000 00111 111 22233333321 1
Q ss_pred cChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHH
Q 015988 219 KSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGL 297 (397)
Q Consensus 219 ~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L 297 (397)
++..++..++.+|..++..-. .....+.+.+.++.++..+.++++.+++.+..++..++...+.+....+- ..+|.+
T Consensus 598 ~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~l 675 (852)
T 4fdd_A 598 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPIL 675 (852)
T ss_dssp CCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHH
Confidence 134566777777777754332 22222224578888999898888999999999999998755333333222 277888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhcCCC-CCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHHhHH---HhHHH
Q 015988 298 LELTIQGTPKSQTKARTLLQLLRDSPY-PRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQVSME---QSLRH 372 (397)
Q Consensus 298 ~~ll~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~~~~---~~~~~ 372 (397)
++.+..+.+.++..|++++..++..-. .-.-+-...++.++..+. ..+..... +.|..++.+|....++ ..+.+
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~-~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~ 754 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIIN-RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ 754 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHHhCHHHhCccHHH
Confidence 888877888999999999988764421 112223456666665443 22223334 8899999999888655 33555
Q ss_pred HHh
Q 015988 373 LQQ 375 (397)
Q Consensus 373 ~~~ 375 (397)
+.+
T Consensus 755 ~~~ 757 (852)
T 4fdd_A 755 FIR 757 (852)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.14 E-value=2.3e-09 Score=107.66 Aligned_cols=305 Identities=13% Similarity=0.100 Sum_probs=203.2
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
...++.+..++..+++.+|..|+.+|..++..-+. .......+|.+..++++++ .++..|+.+|..++...+. ..
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~ 238 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL-DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---ED 238 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH-HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---HH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH-HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---HH
Confidence 34566667777888999999999999999875422 1222233888888888744 3688889999888764332 12
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--hh
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP--DN 197 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~--~~ 197 (397)
.....++.+..++.+++..+|..++.+|..++..-.. .......++.+..++.+++++++..|+.+|..++... +.
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 2345678888888888999999999999998753211 1223567899999999999999999999999987642 21
Q ss_pred HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 198 LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
+.......+++.+..++.+. +..++..++.+|..++..-... . . ....++.+..++.++++.++..++.+|..++
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~-~-~-~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDA--NQHVKSALASVIMGLSPILGKD-N-T-IEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGGGGHHHHCHH-H-H-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhHh-H-H-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 21112234567777777664 4678888888888775422111 1 1 2346788888998888999999999999887
Q ss_pred ccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCccchhh-HHHHH
Q 015988 278 QSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDGDEQS-GKAKK 356 (397)
Q Consensus 278 ~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~ 356 (397)
..-.. . ......+|.|.+++.+.+..+|..+..++..+...-.. ..+....++.++..+. +..... +.|..
T Consensus 392 ~~~~~---~-~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~---d~~~~Vr~~a~~ 463 (588)
T 1b3u_A 392 EVIGI---R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV-EFFDEKLNSLCMAWLV---DHVYAIREAATS 463 (588)
T ss_dssp HHSCH---H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHHGGG---CSSHHHHHHHHH
T ss_pred HhcCH---H-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHhc---CCcHHHHHHHHH
Confidence 65321 1 12245678888888888888999988888877543211 1222233343333221 333333 56666
Q ss_pred HHHHHHHH
Q 015988 357 MLAEMVQV 364 (397)
Q Consensus 357 ~L~~l~~~ 364 (397)
.|..+.+.
T Consensus 464 ~l~~l~~~ 471 (588)
T 1b3u_A 464 NLKKLVEK 471 (588)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666553
No 50
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.10 E-value=2.5e-10 Score=117.23 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=152.0
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHH-HHHhcCCHHHHHHHHHHHHhhcCC--chhH
Q 015988 122 AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLV-EILRYGSQQAKFDAVMALSNLSTH--PDNL 198 (397)
Q Consensus 122 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~-~lL~~~~~~~~~~a~~aL~nLs~~--~~~~ 198 (397)
...+.++++.|+++++..|..|+.+|.+|+.+...+..+...+++..++ .+|.+.+.+++..|+++|+||+.. ++.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3457778899999999999999999999998777888888888888765 568889999999999999999964 6778
Q ss_pred HHHHhCCChHHHHHHhhhcccC-------------------hHHHHHHHHHHHHhcCCccc-chhhhhccCcHHHHHHHH
Q 015988 199 SIILGTNPIPSIVDLLIFCKKS-------------------SKTAEKCTSLIESLVGFDEG-RIVLTSEEGGVLAVVEVL 258 (397)
Q Consensus 199 ~~i~~~g~i~~Lv~ll~~~~~~-------------------~~~~~~a~~~L~nL~~~~~~-~~~~~~~~g~i~~Lv~lL 258 (397)
..+.+.|+++.|..++++.... ..+...++.+|++||...+. ...+. ..++++.|+..|
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~-~~~~l~~l~~~L 191 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVA-TKQTILRLLFRL 191 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-hcccHHHHHHHH
Confidence 9999999999999998652100 12446788899999865544 44454 778999999998
Q ss_pred hcC---CHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHH--HHHhhcCCHHHHHHHHHHHHHhh
Q 015988 259 ENG---SLQAREHAVGALLMMCQSDRCKYREPILREGVIPGL--LELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 259 ~~~---~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L--~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
.+. ..+++..|+.+|.+++..+. +..+.+.+.|....+ +-.+...+...+..++++|.++.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~-~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNL-KVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCH-HHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 543 37899999999999999873 666777776643332 22233455566778889998873
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.08 E-value=3.1e-09 Score=103.37 Aligned_cols=293 Identities=12% Similarity=0.098 Sum_probs=193.4
Q ss_pred hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhC-hHH-HHHHHHhHHHHHHhhcCC--Ch-hHHHHHHHHHHhhhcCh
Q 015988 41 SSAVHRALHLIQSD--DPDLKLEAAREIRRLTKTS-QRC-RRQLAQAVQPLVLMLRAP--DS-DHESALLALLNLAVKDE 113 (397)
Q Consensus 41 ~~~l~~lv~lL~s~--~~~~~~~a~~~L~~l~~~~-~~~-~~~l~~~v~~Lv~lL~~~--~~-~~~~a~~~L~~L~~~~~ 113 (397)
.+.++.++..+.++ ++..+..++.+|..++... ++. ...+...++.++..++++ +. ++..|++++.++.....
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999888 8999999999999999753 222 122222378888888874 43 78889999988653211
Q ss_pred hhH-HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCC--chhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 114 KNK-IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVN--KPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 114 ~~~-~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
.+- ......-.++.+...+.+.+++++..++.+|..+...... ...+ ..+.++.++..+.+.++.++..++.++..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 110 0011111356667777888999999999999999864321 1111 11677888888888899999999999888
Q ss_pred hcCCchhHH------------------HHHh---CCChHHHHHHhhhc-----ccChHHHHHHHHHHHHhcCCcccchhh
Q 015988 191 LSTHPDNLS------------------IILG---TNPIPSIVDLLIFC-----KKSSKTAEKCTSLIESLVGFDEGRIVL 244 (397)
Q Consensus 191 Ls~~~~~~~------------------~i~~---~g~i~~Lv~ll~~~-----~~~~~~~~~a~~~L~nL~~~~~~~~~~ 244 (397)
++....... .+.+ ..+++.+++.+... +++..++..|..+|..++..-. ..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence 875421000 0111 22455566666432 1123467788888888765433 122
Q ss_pred hhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchh-hHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCC
Q 015988 245 TSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCK-YREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 245 ~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~-~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 323 (397)
+ ...++.+...+.+++..+++.++.+|..++.....+ .+..+ ..++|.+++.+.+.++.+|..|+++|..++...
T Consensus 364 ~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 364 V--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp H--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred H--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 2 346677777888888999999999999999764211 11111 568999999999999999999999999997543
Q ss_pred CCCcccCcCchHHHHHHh
Q 015988 324 YPRSELQPDTLENIVCNI 341 (397)
Q Consensus 324 ~~~~~~~~~~~~~ll~~l 341 (397)
.. ......-+++++..|
T Consensus 440 ~~-~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 440 PE-AAINDVYLAPLLQCL 456 (462)
T ss_dssp GG-GCCSTTTHHHHHHHH
T ss_pred cc-ccccHHHHHHHHHHH
Confidence 11 122334455555544
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.06 E-value=1.3e-08 Score=102.77 Aligned_cols=265 Identities=14% Similarity=0.115 Sum_probs=168.8
Q ss_pred HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCc-hhhh
Q 015988 84 VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNK-PFIS 161 (397)
Q Consensus 84 v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~ 161 (397)
++.+..+|.+++. ++..|+.++..+...+++. +.+.+.++.|..+|.++++.++..|+.+|..++.++... ..-.
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l 199 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL 199 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence 5667778877444 7899999999998866553 233577899999999999999999999999998765422 1112
Q ss_pred hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCC----
Q 015988 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGF---- 237 (397)
Q Consensus 162 ~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~---- 237 (397)
..+.+..|+..+.+.++-.+...+.+|..+...++.. ....++.+..++++. +..++.+|++++..+...
T Consensus 200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 200 NPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBT
T ss_pred cHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCC
Confidence 3456788888888889888888999998888643211 122455666666653 467889999999998642
Q ss_pred cccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc-----------------hhhHHHHHH-------cC-
Q 015988 238 DEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDR-----------------CKYREPILR-------EG- 292 (397)
Q Consensus 238 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-----------------~~~r~~i~~-------~g- 292 (397)
++....+. ....+.|+.++ ++++.++..++..|..+....+ ...|..-.+ ..
T Consensus 274 ~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 274 SDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp TBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence 23333222 34556777655 4778889889998888865321 112211111 12
Q ss_pred ---ChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCccchhhHHHHHHHHHHHHHh
Q 015988 293 ---VIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVS 365 (397)
Q Consensus 293 ---~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~A~~~L~~l~~~~ 365 (397)
+++.|..++.+.+..+++.+++.+..++..-. ......++.++.-+. ..+.....++...++.+.+..
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~---~~~~~~v~~Ll~ll~--~~~~~v~~e~i~~l~~ii~~~ 421 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE---QSAERCVSTLLDLIQ--TKVNYVVQEAIVVIRDIFRKY 421 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh---hHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHC
Confidence 34445556666788888888888888875421 111223344443222 122222245555666665543
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.05 E-value=1e-08 Score=102.88 Aligned_cols=265 Identities=13% Similarity=0.076 Sum_probs=184.0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHh-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQA-VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
...++.+..++.++++.+|..|+.+|..++...+. ..+.+. ++.+..+.++++. .+..++..+..++...+..
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 44566666666778899999999999999976533 223333 5666666666333 5777888888877643321
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhH
Q 015988 119 IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNL 198 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~ 198 (397)
.....++.+..+++++++.++..++.+|..++..-.. .......++.+..++.++++.++..|+.+|..++......
T Consensus 161 -~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 237 (588)
T 1b3u_A 161 -VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp -HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH
Confidence 1234567788888999999999999999999864322 1234567889999999999999999999999887642211
Q ss_pred HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 199 SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 199 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
.....+++.+..++.+. +..++..++.+|..++...... .. ....++.++.++..+++.++..++.+|..++.
T Consensus 238 --~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~~--~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 238 --DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPE--IT-KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp --HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHCHH--HH-HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhCcc--cc-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 11223567777777653 4678889999998886532111 11 24578899999998899999999999999987
Q ss_pred cCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 279 SDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 279 ~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
.-..+.+....-...+|.+.+++.+.++.+|+.++.+|..++
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 643332322233456777777777777788877776665553
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.99 E-value=8.3e-08 Score=96.91 Aligned_cols=255 Identities=13% Similarity=0.111 Sum_probs=146.4
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhh---
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKN--- 115 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~--- 115 (397)
....++.+.+.+.+.++.+|..|+.++.++...+++.... ...++.+..+|.+++. ++..|+.+|..++..+++.
T Consensus 119 ~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 119 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 3455677888999999999999999999999866543211 1238899999988554 7889999999998765422
Q ss_pred ------HHHHHH----------------------------cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC----CCCc
Q 015988 116 ------KIKIVE----------------------------AGALEPIISFLQSPDLNLQEYAAAALLTLSAS----SVNK 157 (397)
Q Consensus 116 ------~~~i~~----------------------------~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~----~~~~ 157 (397)
-..+.. ...++.+..++++.++.++..|+.++..+... .+..
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~ 277 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY 277 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence 111111 12345555666777888999999999998642 1221
Q ss_pred hhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcC
Q 015988 158 PFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVG 236 (397)
Q Consensus 158 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~ 236 (397)
.. .-....+.|+.++ ++++++|..|+.+|..+... ++... . .+..+ +....++..++..++.+|.+++.
T Consensus 278 ~~-~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~---~--~~~~~---~~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 278 NM-LLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILK---Q--EIKVF---FVKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp HH-HHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTT---T--CTTTT---SCCTTSCHHHHHHHHHHHHHTCC
T ss_pred HH-HHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHH---H--HHHhh---eeccCChHHHHHHHHHHHHHHCC
Confidence 11 1234567777665 47899999999999988752 22100 0 00100 11001124455555555555542
Q ss_pred CcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHH
Q 015988 237 FDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLL 316 (397)
Q Consensus 237 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L 316 (397)
.. +.. ..++.|..++.+.+.+++..+++++..++...... ....++.|++++......++..+...+
T Consensus 348 ~~-nv~------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~------~~~~v~~Ll~ll~~~~~~v~~e~i~~l 414 (591)
T 2vgl_B 348 QA-NIA------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS------AERCVSTLLDLIQTKVNYVVQEAIVVI 414 (591)
T ss_dssp SS-THH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hh-hHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH------HHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 21 111 13344555555555555555555555555432100 112344455555444444444444333
Q ss_pred HH
Q 015988 317 QL 318 (397)
Q Consensus 317 ~~ 318 (397)
..
T Consensus 415 ~~ 416 (591)
T 2vgl_B 415 RD 416 (591)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 55
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.92 E-value=7.9e-08 Score=100.99 Aligned_cols=311 Identities=10% Similarity=0.056 Sum_probs=195.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC--hHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhh---H
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTS--QRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKN---K 116 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~--~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~---~ 116 (397)
.++.+.+.+.+.++..|..|+.+|..++... ......+...++.++..+++++. ++..++++|..++...... .
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 4455566667888999999999999999764 22333444458889999988443 6888999999888632110 0
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC--Cchhhh--hcCCHHHHHHHHhcCC--HHHHHHHHHHHHh
Q 015988 117 IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSV--NKPFIS--ASGAIPLLVEILRYGS--QQAKFDAVMALSN 190 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~--~~g~i~~L~~lL~~~~--~~~~~~a~~aL~n 190 (397)
.. -...++.|+..+++. +.++..++.+|.+++..-. ....+. -...++.|+..+.+.+ +.++..++.+|..
T Consensus 450 ~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 450 QH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 01 123467788888775 8899999999999875321 011111 1456778888887543 6889999999999
Q ss_pred hcCC-chhHHHHHhCCChHHHHHHhhhc-------------ccChHHHHHHHHHHHHhcCCccc-chhhhhccCcHHHHH
Q 015988 191 LSTH-PDNLSIILGTNPIPSIVDLLIFC-------------KKSSKTAEKCTSLIESLVGFDEG-RIVLTSEEGGVLAVV 255 (397)
Q Consensus 191 Ls~~-~~~~~~i~~~g~i~~Lv~ll~~~-------------~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~~g~i~~Lv 255 (397)
+... ++....... ..++.+++.+... .....++..++.+|.+++..-.. ..... ...++.++
T Consensus 527 l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~ 603 (861)
T 2bpt_A 527 MVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFF 603 (861)
T ss_dssp HHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHH
T ss_pred HHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHH
Confidence 8764 222222222 3456666666532 11234567788888888543322 12222 34677888
Q ss_pred HHHhcCCH-HHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCCcccC---c
Q 015988 256 EVLENGSL-QAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPRSELQ---P 331 (397)
Q Consensus 256 ~lL~~~~~-~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~---~ 331 (397)
..+...+. .+++.++.++..++...+.+....+ ...+|.|.+.+.+.++.++..|..++..+..... ..+. .
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~ 679 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE--EDFRRYSD 679 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG--GGGHHHHH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc--hhccchHH
Confidence 88887766 8899999999999875432332222 3478888988888888999999999888865432 1111 2
Q ss_pred CchHHHHHHhhccCccchhh-HHHHHHHHHHHHH
Q 015988 332 DTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQV 364 (397)
Q Consensus 332 ~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~ 364 (397)
..++.++..+.. .+..... ..|...+..+...
T Consensus 680 ~l~~~l~~~l~~-~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 680 AMMNVLAQMISN-PNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHHHC-TTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-ccccHhhhHHHHHHHHHHHHH
Confidence 233333333321 1111223 5677777766654
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.90 E-value=3.1e-07 Score=96.67 Aligned_cols=316 Identities=11% Similarity=0.070 Sum_probs=201.9
Q ss_pred hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhC-hHH-HHHHHHhHHHHHHhhcCC--Ch-hHHHHHHHHHHhhhcCh
Q 015988 41 SSAVHRALHLIQSD--DPDLKLEAAREIRRLTKTS-QRC-RRQLAQAVQPLVLMLRAP--DS-DHESALLALLNLAVKDE 113 (397)
Q Consensus 41 ~~~l~~lv~lL~s~--~~~~~~~a~~~L~~l~~~~-~~~-~~~l~~~v~~Lv~lL~~~--~~-~~~~a~~~L~~L~~~~~ 113 (397)
...++.++..+.++ ++.+|..++.+|..++..- ++. ...+...++.+...+.++ +. ++..|+.+|..++..-+
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35678889999888 8999999999999998752 221 111222267777777764 33 68889999998775322
Q ss_pred hhH-HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCC-chhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015988 114 KNK-IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVN-KPFISASGAIPLLVEILRYGSQQAKFDAVMALSNL 191 (397)
Q Consensus 114 ~~~-~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nL 191 (397)
.+- ........++.+...+...+.+++..++.+|..+...... -........++.++..+.+.++.++..++.++.++
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 110 0111112466777788888899999999999998763321 11112236788888888888899999999998888
Q ss_pred cCCchh-------------------HHHHH--hCCChHHHHHHhhhc-----ccChHHHHHHHHHHHHhcCCcccchhhh
Q 015988 192 STHPDN-------------------LSIIL--GTNPIPSIVDLLIFC-----KKSSKTAEKCTSLIESLVGFDEGRIVLT 245 (397)
Q Consensus 192 s~~~~~-------------------~~~i~--~~g~i~~Lv~ll~~~-----~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 245 (397)
+..... ...+. -...++.++..+... +++..++..+..+|..++.... ..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~ 364 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH
Confidence 753200 00000 022455666666432 1223466777777777754332 1222
Q ss_pred hccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCC
Q 015988 246 SEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYP 325 (397)
Q Consensus 246 ~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 325 (397)
...++.+...+.+++..+|+.++.+|..++....++...... ..+++.+++.+.+.++.+|..|+++|..++.....
T Consensus 365 --~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 365 --PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp --HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred --HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 245666677777888999999999999999765312111222 45789999999999999999999999988754321
Q ss_pred ---CcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHHh
Q 015988 326 ---RSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQVS 365 (397)
Q Consensus 326 ---~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~~ 365 (397)
........++.++..+. + .+.. ..|...|..+.+..
T Consensus 442 ~~~~~~~l~~~l~~l~~~l~---~-~~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 442 AAINDVYLAPLLQCLIEGLS---A-EPRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp GTSSTTTHHHHHHHHHHHTT---S-CHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHHHh
Confidence 11122234444444332 2 2344 77888888887653
No 57
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.90 E-value=6e-09 Score=106.95 Aligned_cols=191 Identities=15% Similarity=0.125 Sum_probs=140.2
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-h-HHHH-HHhhcCCCh-hHHHHHHHHHHhhhc-Chh
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ-A-VQPL-VLMLRAPDS-DHESALLALLNLAVK-DEK 114 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~-v~~L-v~lL~~~~~-~~~~a~~~L~~L~~~-~~~ 114 (397)
....+.++++.|++.++..|..|+.+|.+++.+ +..+..+.. . |..+ ..+|.+++. ++..|+++|+||+.+ ..+
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 345667788999999999999999999999974 566666554 3 6655 556776444 799999999999974 467
Q ss_pred hHHHHHHcCChHHHHHhhCCC--------------C-------HHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHH
Q 015988 115 NKIKIVEAGALEPIISFLQSP--------------D-------LNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEI 172 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~~~--------------~-------~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~l 172 (397)
.+..++..|++++|..++++. . .++...++.+||+|+... +....+...++++.|+..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 888999999999999988531 0 134566888999998654 455677788999999998
Q ss_pred HhcC---CHHHHHHHHHHHHhhcCCc-hhHHHHHhCCChH---HHHHHhhhcccChHHHHHHHHHHHHh
Q 015988 173 LRYG---SQQAKFDAVMALSNLSTHP-DNLSIILGTNPIP---SIVDLLIFCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 173 L~~~---~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~---~Lv~ll~~~~~~~~~~~~a~~~L~nL 234 (397)
|.+. ..+++..|+.+|++|+.+. +....+.+.+... .+..+.... + .....++++|.|+
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~--~~~~la~giL~Ni 256 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-D--PRAVMACGVLHNV 256 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-C--TTHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-c--HHHHHHHHHHHhH
Confidence 8542 4789999999999999874 4556666655432 233333332 2 2345778888887
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.83 E-value=2.6e-07 Score=93.77 Aligned_cols=256 Identities=12% Similarity=0.037 Sum_probs=164.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIV 120 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~ 120 (397)
-.+..+.+-|.+.++.+|..|+++|+.+... + .+...++.+..+|++++. ++..|+.++.++...+++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~--~---~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v---- 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS--E---MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM---- 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH--H---HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH--H---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----
Confidence 3455666677777888888888888887632 2 222237778888877443 78899999999988766532
Q ss_pred HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc---------------CCHHHHHHHH
Q 015988 121 EAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY---------------GSQQAKFDAV 185 (397)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~---------------~~~~~~~~a~ 185 (397)
.+.++.+..+|.+.++.++..|+.+|..++..+..... .-...++.++.+|.+ .++-.+...+
T Consensus 178 -~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il 255 (618)
T 1w63_A 178 -EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRIL 255 (618)
T ss_dssp -GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHH
Confidence 26778888889899999999999999999864321100 123678888887764 3788888899
Q ss_pred HHHHhhcCCchhHHHHHhCCChHHHHHHhhhc----ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcC
Q 015988 186 MALSNLSTHPDNLSIILGTNPIPSIVDLLIFC----KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENG 261 (397)
Q Consensus 186 ~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 261 (397)
.+|..++..+... ....++.|..++... ..+..++..|..++..+...+ .+. ..++..|..++.++
T Consensus 256 ~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~--~~a~~~L~~~L~~~ 325 (618)
T 1w63_A 256 RLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES----GLR--VLAINILGRFLLNN 325 (618)
T ss_dssp HHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHH--HHHHHHHHHHHTCS
T ss_pred HHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH----HHH--HHHHHHHHHHHhCC
Confidence 9999998754321 122344555555321 112356677777777764322 111 13566777777777
Q ss_pred CHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC
Q 015988 262 SLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
++.++..|+.+|..++...+ .++. ...+.++..+.+.+..+|..|..+|..++...+
T Consensus 326 d~~vr~~aL~~L~~i~~~~p-----~~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n 382 (618)
T 1w63_A 326 DKNIRYVALTSLLKTVQTDH-----NAVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN 382 (618)
T ss_dssp STTTHHHHHHHHHHHHHHHH-----HHHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS
T ss_pred CCchHHHHHHHHHHHHhhCH-----HHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc
Confidence 77777777777777765421 1121 234455666666666677777766666655443
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.75 E-value=5.2e-07 Score=94.89 Aligned_cols=272 Identities=12% Similarity=0.096 Sum_probs=177.3
Q ss_pred hhHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChHH--HHHHHHh-HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhh
Q 015988 42 SAVHRALHLIQSD--DPDLKLEAAREIRRLTKTSQRC--RRQLAQA-VQPLVLMLRAPDS-DHESALLALLNLAVKDEKN 115 (397)
Q Consensus 42 ~~l~~lv~lL~s~--~~~~~~~a~~~L~~l~~~~~~~--~~~l~~~-v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~ 115 (397)
..++.+...+..+ ++.+|..|+.++..++..-... .....+. ++.+...+.+.+. ++..++.+|..++...+..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4455666777666 6889999999999987542111 1111222 6666676666433 6888999999988755543
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-------------------CCchhhh--hcCCHHHHHHHHh
Q 015988 116 KIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-------------------VNKPFIS--ASGAIPLLVEILR 174 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-------------------~~~~~i~--~~g~i~~L~~lL~ 174 (397)
-........++.++..+.+.++.++..++.++..++... .....+. -...++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 222233367888888888888999999998888886431 0001110 1335666777764
Q ss_pred c-------CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc--cchhhh
Q 015988 175 Y-------GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE--GRIVLT 245 (397)
Q Consensus 175 ~-------~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~--~~~~~~ 245 (397)
. .+..++..|..+|..++.... ..+.. .+++.+...+.+ ++..++..++.+|..++.... ......
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccC--CChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 346788888889888876422 11111 234455555554 356788999999999986543 122222
Q ss_pred hccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhh-HHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 246 SEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKY-REPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 246 ~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~-r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
...++.++..+.++++.++..|+++|.+++....... .... -..+++.|++.+.+. +.+++.|+++|..+...
T Consensus 407 --~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 --IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 3578889999998899999999999999997642111 0011 124677778877664 89999999999888643
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.70 E-value=1.6e-06 Score=90.91 Aligned_cols=312 Identities=12% Similarity=0.099 Sum_probs=197.1
Q ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhC-hHH---HHHHHHhHHHHHHhhcCC--Ch-hHHHHHHHHHHhhhcCh
Q 015988 42 SAVHRALHLIQSD-DPDLKLEAAREIRRLTKTS-QRC---RRQLAQAVQPLVLMLRAP--DS-DHESALLALLNLAVKDE 113 (397)
Q Consensus 42 ~~l~~lv~lL~s~-~~~~~~~a~~~L~~l~~~~-~~~---~~~l~~~v~~Lv~lL~~~--~~-~~~~a~~~L~~L~~~~~ 113 (397)
..++.++..+.++ ++..+..++.++..++..- ++. ...+...++.++..+.++ +. ++..|+.++..+...-.
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5677888888887 8899999999998888742 221 112222267777777764 33 68889999888643111
Q ss_pred hhH-HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 114 KNK-IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 114 ~~~-~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
.+- ........++.|...+.+++.+++..++.+|..+..... ....+ ....++.+...+.+.+..++..++.++..
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 110 000012246667778888899999999999998875322 11111 12566777777888899999999999988
Q ss_pred hcCCchh------------------HHHHHhCCChHHHHHHhhhcc-----cChHHHHHHHHHHHHhcCCcccchhhhhc
Q 015988 191 LSTHPDN------------------LSIILGTNPIPSIVDLLIFCK-----KSSKTAEKCTSLIESLVGFDEGRIVLTSE 247 (397)
Q Consensus 191 Ls~~~~~------------------~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 247 (397)
++..... ..... ..+++.++..+.... +...++..+..+|..++.... ..++
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-- 367 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-- 367 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH--
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH--
Confidence 8764211 01111 335667777776421 224577788888888765332 1122
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC---
Q 015988 248 EGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY--- 324 (397)
Q Consensus 248 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--- 324 (397)
...++.+...+.+.+..+++.++.+|..++.....+.-.... ..+++.|++.+.+.++.+|..+.+++..++..-.
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 234566666677788999999999999999764211111122 3478888898988999999999998888764321
Q ss_pred CCcccCcCchHHHHHHhhccCccchhh-HHHHHHHHHHHHH
Q 015988 325 PRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLAEMVQV 364 (397)
Q Consensus 325 ~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~~l~~~ 364 (397)
....+....++.++..+. +. ... ..|+..|..+++.
T Consensus 447 ~~~~~~~~~l~~l~~~l~---~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 447 DPQQHLPGVVQACLIGLQ---DH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp CTTTTHHHHHHHHHHHHT---SC-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc---cC-hHHHHHHHHHHHHHHHh
Confidence 011222344455554332 22 334 6777788777764
No 61
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.69 E-value=1.3e-06 Score=74.84 Aligned_cols=187 Identities=18% Similarity=0.144 Sum_probs=145.1
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHH-HHHHHHhHHHHHHhhcCC-ChhHHHHHHHHHHhhhcChhhH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTS-QRC-RRQLAQAVQPLVLMLRAP-DSDHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~-~~~-~~~l~~~v~~Lv~lL~~~-~~~~~~a~~~L~~L~~~~~~~~ 116 (397)
..+.+..+.++|+..|+.++..++.+|..+.+.- ... +..+.+.++.++.++++. +.+...|+++|..+-.+.+-..
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 3457888999999999999999999999999873 233 344555699999999884 4478889999999988766555
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCch
Q 015988 117 IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPD 196 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~ 196 (397)
..+.. .+.+|..++.++++-+++.++..+..+..... ..+++..+..++.+.+..++..++.+|.+++...+
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 55544 46788999999999999999999999933222 34567888999999999999999999999987543
Q ss_pred hHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCc
Q 015988 197 NLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFD 238 (397)
Q Consensus 197 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~ 238 (397)
....+ .+++..+-.++++. ++.+++.|+.+|..+...+
T Consensus 183 D~~i~--~~I~~eI~elL~~e--D~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DSGHL--TLILDEIPSLLQND--NEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SCCCG--GGTTTTHHHHHTCS--CHHHHHHHHHHHHHHTTSC
T ss_pred CHHHH--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCc
Confidence 22211 23344566677774 5789999999999987764
No 62
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.67 E-value=1e-06 Score=89.40 Aligned_cols=252 Identities=11% Similarity=0.118 Sum_probs=168.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
...++.+.+.|.+.++.+|..|+.++.++...+++.. ...++.+..+|.+.+. ++..|+.+|..++..+++....+
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~ 217 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF 217 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH
Confidence 3457788889999999999999999999998776432 2336777778877553 78889999999987544432222
Q ss_pred HHcCChHHHHHhhCC---------------CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc------CCH
Q 015988 120 VEAGALEPIISFLQS---------------PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY------GSQ 178 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~---------------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~------~~~ 178 (397)
...++.++.+|.. .++-.+...+.+|..+...++. .....++.|..++.. .+.
T Consensus 218 --~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 218 --RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp --HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred --HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHH
Confidence 3578888887753 3777888899999998865421 123345566666532 245
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHH
Q 015988 179 QAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVL 258 (397)
Q Consensus 179 ~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL 258 (397)
.+...|+.++..+...+..+. .++..|..++.+.+ ..++..|+..|..++.... .++ ......++..+
T Consensus 292 aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~~d--~~vr~~aL~~L~~i~~~~p---~~~--~~~~~~i~~~l 359 (618)
T 1w63_A 292 AILYETVLTIMDIKSESGLRV-----LAINILGRFLLNND--KNIRYVALTSLLKTVQTDH---NAV--QRHRSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTCSS--TTTHHHHHHHHHHHHHHHH---HHH--GGGHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhCCC--CchHHHHHHHHHHHHhhCH---HHH--HHHHHHHHHHc
Confidence 788888888888765432221 24567777776643 3566777777777754321 122 12455677777
Q ss_pred hcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 259 ENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 259 ~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
.+++..++..++.+|..++... ... . +++.|.+.+.+.++.++..++..+..++.
T Consensus 360 ~d~d~~Ir~~alelL~~l~~~~--nv~-~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVNGN--NIR-G-----MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCCSS--STH-H-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHcccc--cHH-H-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7777888888888888887653 221 2 24666677777777777777777766654
No 63
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.66 E-value=3.4e-06 Score=81.72 Aligned_cols=312 Identities=10% Similarity=0.084 Sum_probs=187.8
Q ss_pred hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhC----------------hHHHHHHHHhHHHHHHhhcC-CChhHHHH
Q 015988 41 SSAVHRALHLIQSD--DPDLKLEAAREIRRLTKTS----------------QRCRRQLAQAVQPLVLMLRA-PDSDHESA 101 (397)
Q Consensus 41 ~~~l~~lv~lL~s~--~~~~~~~a~~~L~~l~~~~----------------~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a 101 (397)
.+++..|...+.+. ++.+|..|+..|.++.... ++.+..+ -..|+..|.+ +..+ ..+
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~i---k~~ll~~l~~~~~~v-~~~ 109 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREV---KNYVLQTLGTETYRP-SSA 109 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHH---HHHHHHHTTCCCSSS-CSH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHH---HHHHHHHhCCCCchh-hHH
Confidence 34556677777654 6789999999999987542 1122222 2446667766 4446 777
Q ss_pred HHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHHhcCCCCch-hhhhcCCHHHHHHHHhcC--
Q 015988 102 LLALLNLAVKDEKNKIKIVEAGALEPIISFLQSP--DLNLQEYAAAALLTLSASSVNKP-FISASGAIPLLVEILRYG-- 176 (397)
Q Consensus 102 ~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~-~i~~~g~i~~L~~lL~~~-- 176 (397)
+.++..++....... .-.+.++.|+..+.++ ++.++..++.+|..++..-.... .-.....++.+...+.++
T Consensus 110 ~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 110 SQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC
Confidence 888888876421100 0145788899999888 89999999999999986321110 011134778888888887
Q ss_pred CHHHHHHHHHHHHhhcCCch-hH-HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc-chhhhhccCcHHH
Q 015988 177 SQQAKFDAVMALSNLSTHPD-NL-SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG-RIVLTSEEGGVLA 253 (397)
Q Consensus 177 ~~~~~~~a~~aL~nLs~~~~-~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~~g~i~~ 253 (397)
++.++..|+.++.++...-+ +- ......-+++.+...+.+ ++..++..++.+|..++..... ....+ ..+.++.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~ 263 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC--PDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAI 263 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 79999999999998764311 11 000011124444444443 3467888899999888653321 11222 1156677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccC---------------------ch-----------------------------h
Q 015988 254 VVEVLENGSLQAREHAVGALLMMCQSD---------------------RC-----------------------------K 283 (397)
Q Consensus 254 Lv~lL~~~~~~v~~~a~~~L~~L~~~~---------------------~~-----------------------------~ 283 (397)
++..+...++.++..++..+..++... .. .
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 777777777888888887777766431 00 0
Q ss_pred hHHH-------HHH-------cCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCCC--cccCcCchHHHHHHhhccCcc
Q 015988 284 YREP-------ILR-------EGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPYPR--SELQPDTLENIVCNIISQIDG 347 (397)
Q Consensus 284 ~r~~-------i~~-------~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~--~~~~~~~~~~ll~~l~~~~~~ 347 (397)
.|.. +.+ ..+++.+...+.+.+..+|+.|+.++..++...... .......++.++..+. +.
T Consensus 344 ~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~---d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK---DP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG---CS
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc---CC
Confidence 0100 000 113344445556677888888888888887654311 1122345555554332 34
Q ss_pred chhh-HHHHHHHHHHHHHh
Q 015988 348 DEQS-GKAKKMLAEMVQVS 365 (397)
Q Consensus 348 ~~~~-~~A~~~L~~l~~~~ 365 (397)
.... ..|+..|.++...-
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 4455 77888998888754
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.63 E-value=7.3e-07 Score=97.59 Aligned_cols=232 Identities=13% Similarity=0.073 Sum_probs=158.4
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhH-
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVKDEKNK- 116 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~- 116 (397)
.....++.+++.|.+.++.+|..|+.+|..++..-++ ..+...++.|+..+.+ .+.++..|+.+|..++.......
T Consensus 45 ~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 45 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 3446788899999888999999999999999975433 2333347788888877 44468888888988876433210
Q ss_pred ----HHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 117 ----IKIVEAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEILRYGSQQAKFDAVMALS 189 (397)
Q Consensus 117 ----~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~ 189 (397)
..-.-...++.|+..+. +++..++..++.+|..++.... ... .-...++.++..|.++++.+|..|+.+|.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11122356888999998 5788999999999999875321 111 12446677777788888999999999999
Q ss_pred hhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-cchhhhhccCcHHHHHHHHhcCCHHHHHH
Q 015988 190 NLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-GRIVLTSEEGGVLAVVEVLENGSLQAREH 268 (397)
Q Consensus 190 nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~ 268 (397)
.++...... + -...++.++..+....+ ...+..++.++..++.... .....+ ...++.++..+...++.+|+.
T Consensus 201 ~l~~~~~~~--~-~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 201 HLVMSCGNI--V-FVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHH
T ss_pred HHHHhcCHH--H-HHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHH
Confidence 998753321 1 23457888888876432 2233455666666643221 111111 357889999998888899999
Q ss_pred HHHHHHHHhccC
Q 015988 269 AVGALLMMCQSD 280 (397)
Q Consensus 269 a~~~L~~L~~~~ 280 (397)
++.++..++...
T Consensus 275 a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 275 CIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHHC
Confidence 999999988754
No 65
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.63 E-value=2.6e-06 Score=81.39 Aligned_cols=263 Identities=13% Similarity=0.102 Sum_probs=167.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHH--HHHHhhcCC-Ch-hHHHHHHHHHHhhhcChhhHHHHHHcC--ChH
Q 015988 53 SDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQ--PLVLMLRAP-DS-DHESALLALLNLAVKDEKNKIKIVEAG--ALE 126 (397)
Q Consensus 53 s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~--~Lv~lL~~~-~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g--~i~ 126 (397)
.+++-.+..+...+..++...+...+.+...+. .++..|... +. .+..++.+|..+.+ .+++|..+.+.+ .++
T Consensus 136 ~dd~~~ll~a~~l~~ll~~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~ 214 (480)
T 1ho8_A 136 GDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMP 214 (480)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhH
Confidence 334444455555544544332222222222233 455556552 21 36678889999988 688999998754 366
Q ss_pred HHHHhhCC---------------C--CHHHHHHHHHHHHHHhcCCCCchhhhhcCCH--HHHHHHHhc-CCHHHHHHHHH
Q 015988 127 PIISFLQS---------------P--DLNLQEYAAAALLTLSASSVNKPFISASGAI--PLLVEILRY-GSQQAKFDAVM 186 (397)
Q Consensus 127 ~L~~lL~~---------------~--~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i--~~L~~lL~~-~~~~~~~~a~~ 186 (397)
+++.+++. + ..+++-.++-++|-|+.+++....+...+.. +.|+.+++. ...++..-++.
T Consensus 215 ~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la 294 (480)
T 1ho8_A 215 TLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCIS 294 (480)
T ss_dssp HHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHH
Confidence 66654431 1 3567888999999999988766666665543 567777765 45888899999
Q ss_pred HHHhhcCCc--h---hHH-HHHhCCChHHHHHHhhh-cccChHHHHHHHHH-------HHHhcCCc--------------
Q 015988 187 ALSNLSTHP--D---NLS-IILGTNPIPSIVDLLIF-CKKSSKTAEKCTSL-------IESLVGFD-------------- 238 (397)
Q Consensus 187 aL~nLs~~~--~---~~~-~i~~~g~i~~Lv~ll~~-~~~~~~~~~~a~~~-------L~nL~~~~-------------- 238 (397)
+|.||.... + ... .++..++++ ++..|.. ...+.++.+..-.+ +..++..+
T Consensus 295 ~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WS 373 (480)
T 1ho8_A 295 IILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWS 373 (480)
T ss_dssp HHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccC
Confidence 999998754 1 112 233334444 5555543 34445543322221 12222111
Q ss_pred ----------ccchhhhhcc--CcHHHHHHHHhc----------CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHH
Q 015988 239 ----------EGRIVLTSEE--GGVLAVVEVLEN----------GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPG 296 (397)
Q Consensus 239 ----------~~~~~~~~~~--g~i~~Lv~lL~~----------~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~ 296 (397)
+|...+. +. ..+..|+++|++ .++.+..-|+.=|..++++. +++|..+-+.|+=..
T Consensus 374 P~H~se~FW~ENa~kf~-e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~gr~i~~~lg~K~~ 451 (480)
T 1ho8_A 374 PPHVDNGFWSDNIDEFK-KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESIDVLDKTGGKAD 451 (480)
T ss_dssp GGGGCHHHHHHHSGGGS-SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHHHSHHHH
T ss_pred CCccchhHHHHHHHHHH-hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cchhHHHHHcCcHHH
Confidence 2233333 22 247899999974 35777788889999999987 589988888999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHh
Q 015988 297 LLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 297 L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
+.+++.+.++.+|.+|..++..+
T Consensus 452 VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 452 IMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998766
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.53 E-value=1.3e-05 Score=81.14 Aligned_cols=256 Identities=14% Similarity=0.091 Sum_probs=174.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhh--cCCC-hhHHHHHHHHHHhhhcChhhHHHHH
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLML--RAPD-SDHESALLALLNLAVKDEKNKIKIV 120 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL--~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~ 120 (397)
+..+.+-+.+.++.+|-.|+.+|+++.. ++ .+...++.+.+.| .+.+ .++..|+.++..+...+++.. -
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e---~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~ 184 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS--RE---MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---P 184 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH---HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---C
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC--HH---HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---C
Confidence 4456666778888888888888888853 22 2222367788888 5533 378999999999988665432 1
Q ss_pred HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHH----HHhcC-------------CHHHHHH
Q 015988 121 EAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVE----ILRYG-------------SQQAKFD 183 (397)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~----lL~~~-------------~~~~~~~ 183 (397)
..++++.+..+|.+.++.++..|+.++..++..+.. .+ ...++.+++ ++..+ ++-.+..
T Consensus 185 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 185 MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 248899999999999999999999999999864421 11 233444444 43322 5778888
Q ss_pred HHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhc---------ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHH
Q 015988 184 AVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFC---------KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVL 252 (397)
Q Consensus 184 a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~---------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~ 252 (397)
.+..|..++.. ++.+..+.+ .++.++..+.+. .....+..+|..++..+...++ +. ..++.
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~----~~--~~~~~ 332 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN----LL--VRACN 332 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH----HH--HHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH----HH--HHHHH
Confidence 88999988864 233333333 233343322111 1123677888888888863222 22 24677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhh-cCCHHHHHHHHHHHHHhhcCC
Q 015988 253 AVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTI-QGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 253 ~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~ 323 (397)
.|..+|.++++.++..++..|..++...+ . .. ++ ......++..+. +.+..++..|..+|..++...
T Consensus 333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~-~-~~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~ 400 (621)
T 2vgl_A 333 QLGQFLQHRETNLRYLALESMCTLASSEF-S-HE-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS 400 (621)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHTTCTT-T-HH-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhccC-c-HH-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh
Confidence 88888888899999999999999987642 1 12 22 235677888888 888999999999998886553
No 67
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.40 E-value=1.8e-05 Score=67.92 Aligned_cols=219 Identities=17% Similarity=0.109 Sum_probs=157.0
Q ss_pred HHHHHHhhcCCC-hhHHHHHHHHHHhhhcC-hhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCC-chhh
Q 015988 84 VQPLVLMLRAPD-SDHESALLALLNLAVKD-EKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVN-KPFI 160 (397)
Q Consensus 84 v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~-~~~i 160 (397)
+..|..+|+..| .++..++.+|..+.+.- ...+...++ ..++.+++++++.|+.+...|+.+|..|-.+.+. ...+
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 778888888844 47899999999998753 334444444 4689999999999999999999999999875542 2222
Q ss_pred hhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc
Q 015988 161 SASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG 240 (397)
Q Consensus 161 ~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~ 240 (397)
...+..|..++.++++-.+..++..+..|...... .+++..+..++.+ .+..++..++.+|.|++...+.
T Consensus 114 --~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~S--kd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 114 --LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVS--PDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp --HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHGGGCSS
T ss_pred --HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhC--CChhHHHHHHHHHHHhhcccCC
Confidence 22466777888899999999999999998332221 2456678888854 4578899999999999876654
Q ss_pred chhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHH-H-cCChHHHHHHh-hcCCHHHHHHHHHHHH
Q 015988 241 RIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPIL-R-EGVIPGLLELT-IQGTPKSQTKARTLLQ 317 (397)
Q Consensus 241 ~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~-~-~g~v~~L~~ll-~~~~~~~~~~A~~~L~ 317 (397)
...+ .+.+..+-.+|.+.|+.+++.|+.+|..+.+.+ .++.+. + .++....-.+. ..+.|.++.+|-.+-.
T Consensus 184 ~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p---i~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~ 257 (265)
T 3b2a_A 184 SGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFP---LLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSD 257 (265)
T ss_dssp CCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC---CCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc---ccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Confidence 4432 356677888999999999999999999999875 222222 1 12222222233 4588889999876655
Q ss_pred Hh
Q 015988 318 LL 319 (397)
Q Consensus 318 ~l 319 (397)
.+
T Consensus 258 ~l 259 (265)
T 3b2a_A 258 LI 259 (265)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.27 E-value=3.6e-06 Score=92.10 Aligned_cols=266 Identities=10% Similarity=0.090 Sum_probs=180.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH-HH-HHHHHhHHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQR-CR-RQLAQAVQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~-~~-~~l~~~v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
..+..+++.+.+.|+++|..|...|.+....+.. .. ......++.|++.|.+++ .++..|+.+|..++...+. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence 4577888888899999999999999887754311 00 112223778888887733 3688899999999864333 11
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCc------hhhhhcCCHHHHHHHHh-cCCHHHHHHHHHHHHhh
Q 015988 119 IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNK------PFISASGAIPLLVEILR-YGSQQAKFDAVMALSNL 191 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~------~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~aL~nL 191 (397)
+ ...++.|+..+.++++.+|..++.+|..++..-... ..-.....++.|+..+. ++++.++..|+.+|..+
T Consensus 84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1 234677888888888889999999998887532211 11124567889999998 58899999999999998
Q ss_pred cCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCC-HHHHHHH
Q 015988 192 STH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGS-LQAREHA 269 (397)
Q Consensus 192 s~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~a 269 (397)
+.. .+.-... -...++.++..+.+ ++..++..|+.+|..++...... ++ ...++.++..|...+ ..++..+
T Consensus 162 ~~~~~~~l~~~-~~~ll~~l~~~L~~--~~~~vR~~a~~al~~l~~~~~~~--~~--~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 162 LSRQGGLLVNF-HPSILTCLLPQLTS--PRLAVRKRTIIALGHLVMSCGNI--VF--VDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHTCSSCTTT-HHHHHHHHGGGGGC--SSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHhHhHHHHH-HHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHhcCHH--HH--HHHHHHHHHHhccCCchhHHHHH
Confidence 742 1100000 02234555555654 34678899999999997654332 22 346888888887543 4566778
Q ss_pred HHHHHHHhccCchhhHHHHHH--cCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 270 VGALLMMCQSDRCKYREPILR--EGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 270 ~~~L~~L~~~~~~~~r~~i~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
+.++..++...+. .+.. ..+++.+++.+.+.++.+|+.+..++..+...
T Consensus 235 ~~~l~~l~~~~~~----~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 235 IQCIAAISRQAGH----RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHSSG----GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 8888888775422 2222 46788999999888899999999988877553
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.26 E-value=8.2e-05 Score=75.28 Aligned_cols=257 Identities=11% Similarity=0.124 Sum_probs=165.0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhc-CCCh-hHHHHHHHHHHhhhcChhhHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLR-APDS-DHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~-~~~~-~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
...+..|.++|.+.++++|..++..|..++...+. ...+......++..|+ ++|. ++..++..|..++. +.|...
T Consensus 328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~ 404 (621)
T 2vgl_A 328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ 404 (621)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH
Confidence 35667788888888899999999999999876532 2334444777888888 6554 78889999999874 455544
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC-Cch
Q 015988 119 IVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST-HPD 196 (397)
Q Consensus 119 i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~-~~~ 196 (397)
+ +..|...+...+.+.+..++..+..++..- +. ..-.+..|++++......+...++..+..+.. .++
T Consensus 405 I-----v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~-----~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~ 474 (621)
T 2vgl_A 405 I-----VAEMLSYLETADYSIREEIVLKVAILAEKYAVD-----YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD 474 (621)
T ss_dssp H-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS-----THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS
T ss_pred H-----HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh
Confidence 4 445677777778888888888888887421 11 12346777777765433344445555555543 344
Q ss_pred hHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015988 197 NLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMM 276 (397)
Q Consensus 197 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 276 (397)
.+.. ++..|++.+.++.....+...++++|+..+..-.+...+. -...+..+.+.+...++.++..++.++..+
T Consensus 475 ~~~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~-p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl 548 (621)
T 2vgl_A 475 VQGY-----AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSS-PLIQFNLLHSKFHLCSVPTRALLLSTYIKF 548 (621)
T ss_dssp CHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4433 2456777787764445677788888887643211110000 001234455555567799999999999998
Q ss_pred hccCchhhHHHHHHcCChHHHH-HHhh--cCCHHHHHHHHHHHHHhhcCC
Q 015988 277 CQSDRCKYREPILREGVIPGLL-ELTI--QGTPKSQTKARTLLQLLRDSP 323 (397)
Q Consensus 277 ~~~~~~~~r~~i~~~g~v~~L~-~ll~--~~~~~~~~~A~~~L~~l~~~~ 323 (397)
.... ++.+.. +..++ .... +.++++|++|...++.+...+
T Consensus 549 ~~~~-p~~~~~------i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~ 591 (621)
T 2vgl_A 549 VNLF-PEVKAT------IQDVLRSDSQLKNADVELQQRAVEYLRLSTVAS 591 (621)
T ss_dssp HHHC-GGGHHH------HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSC
T ss_pred HHHC-hHHHHH------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCH
Confidence 7755 243322 22222 2334 788999999999999887653
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.23 E-value=6.6e-06 Score=72.92 Aligned_cols=181 Identities=14% Similarity=0.100 Sum_probs=128.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH-HHHHHHhHHHHHHhhc-CCCh-hHHHHHHHHHHhhhcChhhHHHHHH
Q 015988 45 HRALHLIQSDDPDLKLEAAREIRRLTKTSQRC-RRQLAQAVQPLVLMLR-APDS-DHESALLALLNLAVKDEKNKIKIVE 121 (397)
Q Consensus 45 ~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~-~~~l~~~v~~Lv~lL~-~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~ 121 (397)
+.+.+.+.+.++..|..|+..|..+....+.. ...+.+.++.|...+. +++. ++..|+.++..++..-...- .-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHH
Confidence 34778888999999999999999999863221 1112233777888884 6444 68889999999986321111 1112
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--chh-H
Q 015988 122 AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH--PDN-L 198 (397)
Q Consensus 122 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~--~~~-~ 198 (397)
...++.++..+.+.+..++..+..+|..+...... ...++.+...|.+.++.++..++..|..+... ++. -
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34689999999999999999999999999764321 23678888889999999999999999996543 221 1
Q ss_pred HHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 199 SIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 199 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
.... ..+++.|+.++.+. ...++..|..++..++
T Consensus 171 ~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEP--DPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHHHHHH
Confidence 1111 24678888888654 4678888888888764
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.14 E-value=2.8e-05 Score=68.78 Aligned_cols=181 Identities=11% Similarity=0.057 Sum_probs=130.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhcC-CCCchhhhhcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCchhHHHHHh-
Q 015988 127 PIISFLQSPDLNLQEYAAAALLTLSAS-SVNKPFISASGAIPLLVEILR-YGSQQAKFDAVMALSNLSTHPDNLSIILG- 203 (397)
Q Consensus 127 ~L~~lL~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~aL~nLs~~~~~~~~i~~- 203 (397)
.+.+.+.+.+-..|..++..|..+... ......- -...++.|...+. +.+..++..|+.+|..|+..-. ..+..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--KRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG--GGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 477788888999999999999988764 2211100 1245777888884 8999999999999999985321 11111
Q ss_pred -CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCch
Q 015988 204 -TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRC 282 (397)
Q Consensus 204 -~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~ 282 (397)
..+++.|+..+.+. ...++..+..+|.++..... + ...++.+...+++.++.++..++..|..+.....+
T Consensus 96 ~~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~-----~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 ASACVPSLLEKFKEK--KPNVVTALREAIDAIYASTS-----L--EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSC-----H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCC-----H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 23577788877764 46788999999998866432 1 13567888888888999999999999996543211
Q ss_pred h--hHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 283 K--YREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 283 ~--~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
+ ....+ ...+|.|.+.+.+.++.+|..|..++..+..
T Consensus 167 ~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 22222 3589999999999999999999998887753
No 72
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.09 E-value=2.9e-07 Score=73.57 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=81.0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
...++.++..|+++++.+|..|++.|..+... .++.|+.+|++++. ++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 34566778888888888888888887655321 15777788877443 67888888887753
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNL 191 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nL 191 (397)
...++.|+..|+++++.++..++.+|.++. ....++.|..+++++++.++..|+.+|..+
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 124778888888888888888888888774 234678888888888888888888887653
No 73
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.98 E-value=0.00013 Score=66.57 Aligned_cols=151 Identities=12% Similarity=0.135 Sum_probs=123.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-hcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhh
Q 015988 166 IPLLVEILRYGSQQAKFDAVMALSN-LSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVL 244 (397)
Q Consensus 166 i~~L~~lL~~~~~~~~~~a~~aL~n-Ls~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~ 244 (397)
...+++.|.+++.+.+..++.-|.. ++.+.+....++..+|+..|++++... +...+.-++.+|.+|-.+..+..-+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccch
Confidence 4456677778888889999999998 677889999999999999999999875 4678899999999999998888777
Q ss_pred hhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH--------cC--ChHHHHHHhh---cCCHHHHHH
Q 015988 245 TSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR--------EG--VIPGLLELTI---QGTPKSQTK 311 (397)
Q Consensus 245 ~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~--------~g--~v~~L~~ll~---~~~~~~~~~ 311 (397)
+.....|..+..++.+.+..+...|+.+|..++..++ .....+.+ .| -.+.|+.++. ..+.+++.+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 7666788999999998889999999999999998873 23322222 12 3789999997 678999999
Q ss_pred HHHHHHHh
Q 015988 312 ARTLLQLL 319 (397)
Q Consensus 312 A~~~L~~l 319 (397)
|..++..+
T Consensus 277 amtLIN~l 284 (339)
T 3dad_A 277 TVTLINKT 284 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888755
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.93 E-value=0.0051 Score=50.85 Aligned_cols=209 Identities=17% Similarity=0.237 Sum_probs=140.3
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhh
Q 015988 84 VQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFIS 161 (397)
Q Consensus 84 v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 161 (397)
+..++.+|++ -..++.+|+..+..++..-++...-+ +..|+.+++ ++...+....++++..++.-. +.+
T Consensus 34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe~- 104 (253)
T 2db0_A 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PEL- 104 (253)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HHH-
T ss_pred HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---HHH-
Confidence 6778888876 33369999999999998777655444 345566654 566667666677888877421 111
Q ss_pred hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc
Q 015988 162 ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG 240 (397)
Q Consensus 162 ~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~ 240 (397)
-.+.+|.+..=..-+++.++.+...+|..++.. ++... +++.-+..++.+.+ ..=...|+.. +..-.++
T Consensus 105 v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd--~~Dkl~aLnF---i~alGen 174 (253)
T 2db0_A 105 VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKN--REDKLTALNF---IEAMGEN 174 (253)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSS--HHHHHHHHHH---HHTCCTT
T ss_pred HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCC--hHHHHHHHHH---HHHHhcc
Confidence 123445554444568999999999999988873 44322 34456777777542 2212334443 4444555
Q ss_pred chhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 241 RIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 241 ~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
....+ .-.++.|+.+|..++..++..++.+|.+++..+ +..|..+. .-++-+.+.+..+++.....|..+.
T Consensus 175 ~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 175 SFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp THHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred Ccccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 54444 357899999999999999999999999999987 45665433 3455667788889888877776653
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.92 E-value=1.6e-06 Score=69.19 Aligned_cols=120 Identities=20% Similarity=0.157 Sum_probs=87.0
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHH
Q 015988 122 AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSII 201 (397)
Q Consensus 122 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i 201 (397)
...++.|..+|+++++.++..|+.+|..+.. ..++.|+.+|+++++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4567788889988888888877766654421 136899999999999999999999998763
Q ss_pred HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015988 202 LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLM 275 (397)
Q Consensus 202 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 275 (397)
...++.|..++.+. +..++..++.+|.++. +...++.|+.+++++++.++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDD--SGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 13478888888764 4678899999999763 23578899999988889999999988764
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.85 E-value=0.00035 Score=65.06 Aligned_cols=245 Identities=13% Similarity=0.048 Sum_probs=146.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHHc
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVEA 122 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~ 122 (397)
...+++++.+.+...++-...++..++..+++. + -++..+..-+++ ++.++-.|+++|.++.. ++.-..
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~---- 139 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I-IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA---- 139 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH----
Confidence 334455666666666666666666665542111 1 126777777777 44478889999999875 333222
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHH
Q 015988 123 GALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIIL 202 (397)
Q Consensus 123 g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~ 202 (397)
..+.+-..|.+.++.++..|+-+...|....+ + ++ .++++.+-+++.+.++-++.+|+.+|..+...+..
T Consensus 140 -l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e-~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~----- 209 (355)
T 3tjz_B 140 -IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--D-VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL----- 209 (355)
T ss_dssp -HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--H-HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-----
T ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--H-HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-----
Confidence 34567778889999999999988888865432 2 23 36899999999999999999999999999875421
Q ss_pred hCCChHHHHHHhhhccc-ChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc
Q 015988 203 GTNPIPSIVDLLIFCKK-SSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQSDR 281 (397)
Q Consensus 203 ~~g~i~~Lv~ll~~~~~-~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~ 281 (397)
.+..|+..+..+.. ++-.+-..++.+..++..++.. . ....++.+..+|++.++.|...|+.++..+...+.
T Consensus 210 ---a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~-~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~ 282 (355)
T 3tjz_B 210 ---AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---R-DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA 282 (355)
T ss_dssp ---HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC------
T ss_pred ---HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---h-HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH
Confidence 23344444433211 2333333444444443332111 0 23455667777788899999999999999866431
Q ss_pred hhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 282 CKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 282 ~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
. +. ..++..|..++.+.++.+|..|+..|..+..
T Consensus 283 -~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 283 -K----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred -H----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1 12 3456778888989999999999988777754
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.84 E-value=0.0045 Score=51.14 Aligned_cols=216 Identities=12% Similarity=0.110 Sum_probs=152.6
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh--hHHHHHHHHHHhhhcChhhHH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS--DHESALLALLNLAVKDEKNKI 117 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~--~~~~a~~~L~~L~~~~~~~~~ 117 (397)
+...+..+++.|..+-|-+|.+|+..+..+++.-++....+ +..|+.+++.++. .-..-...++.++..+|+...
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl---~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM---LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH---HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH---HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence 45678889999988889999999999999998765544332 5667777765333 234556789999987776543
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchh
Q 015988 118 KIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
. .+|.+..=++-+++.++.+...+|-.++...+ . .-.+++..+..++.+++..-+..|+..|..+..+.-
T Consensus 107 ~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP--~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~- 176 (253)
T 2db0_A 107 S-----MIPVLFANYRIGDEKTKINVSYALEEIAKANP--M--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF- 176 (253)
T ss_dssp H-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--H--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH-
T ss_pred h-----hHHHHHHHHhcCCccceecHHHHHHHHHHhCh--H--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc-
Confidence 3 36777777788899999999999988875321 1 124567778889999998888888888877765421
Q ss_pred HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 198 LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
.-+ .-.++.|..+|.+. +.-++..+..+|.+++..++..+.++ ..-++-++..+..++......|..++
T Consensus 177 --~yv-~PfLprL~aLL~D~--deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 177 --KYV-NPFLPRIINLLHDG--DEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp --HHH-GGGHHHHHGGGGCS--SHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred --ccc-CcchHHHHHHHcCc--chhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 111 23578899999875 35677889999999987665543332 34444555667777777777777665
Q ss_pred cc
Q 015988 278 QS 279 (397)
Q Consensus 278 ~~ 279 (397)
.-
T Consensus 246 l~ 247 (253)
T 2db0_A 246 LL 247 (253)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 78
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.84 E-value=0.0004 Score=63.32 Aligned_cols=183 Identities=14% Similarity=0.051 Sum_probs=129.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-HhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHH-hC
Q 015988 127 PIISFLQSPDLNLQEYAAAALLT-LSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIIL-GT 204 (397)
Q Consensus 127 ~L~~lL~~~~~~~~~~a~~~L~n-Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~-~~ 204 (397)
.+++.|.+++.+.+..++--|.. ++.+......++..+|+..|+.+...++...+..++.+|.+|......-.-++ ..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34556666667777778777887 55556778899999999999999999999999999999999998766554555 45
Q ss_pred CChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhcc--------C--cHHHHHHHHh---cCCHHHHHHHHH
Q 015988 205 NPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEE--------G--GVLAVVEVLE---NGSLQAREHAVG 271 (397)
Q Consensus 205 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~--------g--~i~~Lv~lL~---~~~~~v~~~a~~ 271 (397)
..|..+..++.+ ....+.+.|+.+|..++.+.+....++.++ | -+..|+.+|. +.+.+++.++..
T Consensus 202 ~fI~~lyslv~s--~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 202 DTIQWLYTLCAS--LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 678889998885 357889999999999987765333332111 1 2678999997 678999998888
Q ss_pred HHHHHhccC-chhhHHHHH----HcCChHHHHHHhhcC--CHHHHHH
Q 015988 272 ALLMMCQSD-RCKYREPIL----REGVIPGLLELTIQG--TPKSQTK 311 (397)
Q Consensus 272 ~L~~L~~~~-~~~~r~~i~----~~g~v~~L~~ll~~~--~~~~~~~ 311 (397)
.+-.+-..- +.+-+..+. +.|.-..+.+.+... ++..++.
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 777765442 223233333 345445556667653 4455443
No 79
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.80 E-value=0.0044 Score=59.30 Aligned_cols=315 Identities=15% Similarity=0.142 Sum_probs=184.3
Q ss_pred hhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhCh---HHHHHHHHh---HHHHHH-hhcCCCh-hHHHHHHHHHHhhhc
Q 015988 41 SSAVHRALHLIQ-SDDPDLKLEAAREIRRLTKTSQ---RCRRQLAQA---VQPLVL-MLRAPDS-DHESALLALLNLAVK 111 (397)
Q Consensus 41 ~~~l~~lv~lL~-s~~~~~~~~a~~~L~~l~~~~~---~~~~~l~~~---v~~Lv~-lL~~~~~-~~~~a~~~L~~L~~~ 111 (397)
..++..++.+|+ ....++....+..+..+...++ ..-..+.+. ...+.. .+...+. ....+...+..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 456777888887 4567888888999999998875 333444442 222222 2222333 345555555555432
Q ss_pred ChhhHHHHHHcCChH--HHHHhhCC-CCHHHHHHHHHHHHHHhcCCCCchhhhhcC--CHHHHHHHHhc-----------
Q 015988 112 DEKNKIKIVEAGALE--PIISFLQS-PDLNLQEYAAAALLTLSASSVNKPFISASG--AIPLLVEILRY----------- 175 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~--~L~~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~L~~lL~~----------- 175 (397)
........ ...+. -++..|.+ ++.+.+..++.+|..|...++.|..+.+.+ .++.++.++..
T Consensus 156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 22211111 01112 34455554 344556678888888888888888887533 46666654431
Q ss_pred ----C--CHHHHHHHHHHHHhhcCCchhHHHHHhCCCh--HHHHHHhhhcccChHHHHHHHHHHHHhcCCcc-cc----h
Q 015988 176 ----G--SQQAKFDAVMALSNLSTHPDNLSIILGTNPI--PSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE-GR----I 242 (397)
Q Consensus 176 ----~--~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~-~~----~ 242 (397)
+ ....+++++.+++-|+..++....+...++. ..|+.+++.. ...++++-++.+|.||..... +. .
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s-~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT-IKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1 2567899999999999998888888776643 5677778775 357899999999999977542 11 2
Q ss_pred hhhhccCcHHHHHHHHhc---CCHHHHHHHHHHHHHH-------hccCchhhH----------------HHHHHc-----
Q 015988 243 VLTSEEGGVLAVVEVLEN---GSLQAREHAVGALLMM-------CQSDRCKYR----------------EPILRE----- 291 (397)
Q Consensus 243 ~~~~~~g~i~~Lv~lL~~---~~~~v~~~a~~~L~~L-------~~~~~~~~r----------------~~i~~~----- 291 (397)
.++...++ ..++..|.. .|+++.+-.-.....| ++.+ +++ +.|+.+
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfD--eY~~El~sG~L~WSP~H~se~FW~ENa~kf 389 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFD--EYVAELDSKLLCWSPPHVDNGFWSDNIDEF 389 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHH--HHHHHHHHTCCCCCGGGGCHHHHHHHSGGG
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHhcCCcccCCCccchhHHHHHHHHH
Confidence 22212334 556666654 4566554433333222 2111 222 244432
Q ss_pred -----CChHHHHHHhhc----------CCHHHHHHHHHHHHHh-hcCCCCCcccCcCchHHHHHHhhccCccchhh-HHH
Q 015988 292 -----GVIPGLLELTIQ----------GTPKSQTKARTLLQLL-RDSPYPRSELQPDTLENIVCNIISQIDGDEQS-GKA 354 (397)
Q Consensus 292 -----g~v~~L~~ll~~----------~~~~~~~~A~~~L~~l-~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A 354 (397)
..+..|++++.+ .++.+..-|+.=+..+ ...|..+.++..-+.-..+..|..+.+ +.. ..|
T Consensus 390 ~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d--~~Vr~~A 467 (480)
T 1ho8_A 390 KKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD--SRVKYEA 467 (480)
T ss_dssp SSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS--HHHHHHH
T ss_pred HhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC--HHHHHHH
Confidence 257888999974 2344444455545555 455777777766444445556665443 333 667
Q ss_pred HHHHHHHHH
Q 015988 355 KKMLAEMVQ 363 (397)
Q Consensus 355 ~~~L~~l~~ 363 (397)
...+..++.
T Consensus 468 L~avQklm~ 476 (480)
T 1ho8_A 468 LKATQAIIG 476 (480)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665543
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00013 Score=64.83 Aligned_cols=186 Identities=10% Similarity=0.063 Sum_probs=128.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-HhhhChHHH---HHHHHhHHHHHHhh-cCCCh-hHHHHHHHHHHhhhcCh--hhH-
Q 015988 46 RALHLIQSDDPDLKLEAAREIRR-LTKTSQRCR---RQLAQAVQPLVLML-RAPDS-DHESALLALLNLAVKDE--KNK- 116 (397)
Q Consensus 46 ~lv~lL~s~~~~~~~~a~~~L~~-l~~~~~~~~---~~l~~~v~~Lv~lL-~~~~~-~~~~a~~~L~~L~~~~~--~~~- 116 (397)
.+-+.+.+.+|..|..|+..|.. ++.+.++.. ..+.+.+..|...+ ++.+. ++..|+.+|..++.+-. ...
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35666789999999999999999 875532211 11122367777778 55444 68889999999986321 211
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc
Q 015988 117 IKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~ 195 (397)
... .-.++.+++.+.+....++..+..++-.+...- +....-.-...++.|+..|.+.++.++..++.+|..+....
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 222 236889999999988999999888888887532 11111001246888889999999999999999999987642
Q ss_pred hh--HH--HHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 196 DN--LS--IILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 196 ~~--~~--~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
.. .. ..+...+++.|.+++.+. +..++..|..++..++
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILI 219 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 21 11 122246788999999764 5678888888888764
No 81
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00025 Score=63.01 Aligned_cols=187 Identities=10% Similarity=0.065 Sum_probs=126.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHH-HhcCC-CCchhhhh-cCCHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCchhHHHHH-
Q 015988 128 IISFLQSPDLNLQEYAAAALLT-LSASS-VNKPFISA-SGAIPLLVEIL-RYGSQQAKFDAVMALSNLSTHPDNLSIIL- 202 (397)
Q Consensus 128 L~~lL~~~~~~~~~~a~~~L~n-Ls~~~-~~~~~i~~-~g~i~~L~~lL-~~~~~~~~~~a~~aL~nLs~~~~~~~~i~- 202 (397)
+.+.+.+.+-.-|..++..|.. +.... .....-.+ ...+..|...+ ++.+..++..|+.+|..|+..-.. ..+.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccH
Confidence 4556678888889999999998 76421 11100111 24577777888 688999999999999999842110 1111
Q ss_pred h--CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCccc-chhh-hhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 015988 203 G--TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEG-RIVL-TSEEGGVLAVVEVLENGSLQAREHAVGALLMMCQ 278 (397)
Q Consensus 203 ~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~-~~~~-~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~ 278 (397)
. .-+++.++..+.+. ...++..+..+|..++..-.. ...- . ...++.|+..|+++++.+++.++..|..+..
T Consensus 100 ~y~~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 1 12567777777664 356777777777777543211 1100 1 1367888889999999999999999999987
Q ss_pred cCchhhHHHHH---HcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 279 SDRCKYREPIL---REGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 279 ~~~~~~r~~i~---~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
..+ .....+. ....+|.|.+++.+.++.+|..|..++..+.
T Consensus 176 ~~~-~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 176 EEK-DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HCC-SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HcC-CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 652 1112222 2568999999999999999999999888775
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.74 E-value=0.00023 Score=66.32 Aligned_cols=241 Identities=15% Similarity=0.036 Sum_probs=131.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCC-hhHHHHHHHHHHhhhcChhhHHHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPD-SDHESALLALLNLAVKDEKNKIKIV 120 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~~~~~~i~ 120 (397)
=++..+.+-++++++-+|-.|+++|+.+...+ . +....+.+.+.|.+.+ .++..|+.+...+....++. +
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m---~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--M---LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----V 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--T---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----H
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--H---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----H
Confidence 45667888888999999999999999998653 2 2222577778887743 47889999999998766653 2
Q ss_pred HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCchh
Q 015988 121 EAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG---SQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~~~~a~~aL~nLs~~~~~ 197 (397)
.++++.+-+++.+.++.++.+|+.+|..+..++. ..+..|+..+..+ ++-.+..-+..+..+...++.
T Consensus 175 -~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~ 245 (355)
T 3tjz_B 175 -KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG 245 (355)
T ss_dssp -HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------
T ss_pred -HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch
Confidence 2689999999999999999999999999986541 1455566666553 355555555555555543310
Q ss_pred HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 198 LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
. .....++.+...+++. +..++.+|+.+|..+...+... . ..++..|..++.++++.++..|+..|..+.
T Consensus 246 ~---~~~~~~~~l~~~L~~~--~~aVvyEa~k~I~~l~~~~~~~---~--~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 246 S---RDSPLFDFIESCLRNK--HEMVVYEAASAIVNLPGCSAKE---L--APAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp --------------CCCCCS--SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred h---hHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCCCHHH---H--HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 0 1123445555556653 4678899999998875532221 1 234567777888889999999999999988
Q ss_pred ccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHH
Q 015988 278 QSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLL 316 (397)
Q Consensus 278 ~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L 316 (397)
...+ + .+.. .-..+..++.+.+..+...|...|
T Consensus 316 ~~~P-~---~v~~--~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 316 MKHP-S---AVTA--CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ---------------------------------------
T ss_pred HHCc-H---HHHH--HHHHHHHHccCCcHhHHHHHHHHh
Confidence 7642 1 2222 334556677777777766665543
No 83
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.58 E-value=0.0098 Score=61.90 Aligned_cols=236 Identities=13% Similarity=0.080 Sum_probs=151.4
Q ss_pred hHHHHHHHhcCCC--------HHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCC-hhHHHHHHHHHHhhhcCh
Q 015988 43 AVHRALHLIQSDD--------PDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPD-SDHESALLALLNLAVKDE 113 (397)
Q Consensus 43 ~l~~lv~lL~s~~--------~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~~~ 113 (397)
.+..|...|.+.+ +.+|..|+..|+-..-++ ... +.+..|..+|.+.+ ..+..|+.+|+.+..++.
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS-~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg 504 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS-ANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG 504 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC-CCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC
Confidence 3455555555444 556767777777655432 111 12455666666533 345567777777644322
Q ss_pred hhHHHHHHcCChHHHHHhh-CCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh-cCCHHHHHHHHHHHHhh
Q 015988 114 KNKIKIVEAGALEPIISFL-QSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR-YGSQQAKFDAVMALSNL 191 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~aL~nL 191 (397)
+.. ++..|+..+ ...+..++..++..|..+.. .....++.+++.|. +.++-+|..++.++.--
T Consensus 505 -n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~alglA 569 (963)
T 4ady_A 505 -KPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIALA 569 (963)
T ss_dssp -CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred -CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 111 234444443 34567888888888887754 23456778888876 46788888887766532
Q ss_pred cCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHH-hcCCHHHHHHHH
Q 015988 192 STHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVL-ENGSLQAREHAV 270 (397)
Q Consensus 192 s~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~ 270 (397)
.....+. ..|+.|++.+.++ ....++..|...|+.+....+ ..++.++.+| ++.++.+|..++
T Consensus 570 yaGTGn~------~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAa 633 (963)
T 4ady_A 570 YAGTGNN------SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTA 633 (963)
T ss_dssp TTTSCCH------HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHH
T ss_pred hcCCCCH------HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHH
Confidence 2222211 2466677777665 345678888888887655442 2456677654 467899999999
Q ss_pred HHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcC
Q 015988 271 GALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 271 ~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 322 (397)
.+|..++..++ .. .++..|.++..+.++.+++.|+.+|..+...
T Consensus 634 lALGli~aGn~---~~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 634 FALGIACAGKG---LQ-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHHTSSSC---CH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhccCCC---cH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 99999987652 11 2466788888999999999999999988544
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.52 E-value=0.0098 Score=62.47 Aligned_cols=260 Identities=15% Similarity=0.125 Sum_probs=169.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC---hHHHHHHHHhHHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhH
Q 015988 41 SSAVHRALHLIQSDDPDLKLEAAREIRRLTKTS---QRCRRQLAQAVQPLVLMLRA-PDSDHESALLALLNLAVKDEKNK 116 (397)
Q Consensus 41 ~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~---~~~~~~l~~~v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~ 116 (397)
.+.+..+.+.+...... +.|+..+..++... +.....+...++.++..+.+ ...++..|..++..+...-+.+.
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 47777888877554333 88999999999643 22333344447888887776 33356666666666654322221
Q ss_pred HHHHHcCChHHHHHhhCCC-CHHHHHHHHHHHHHHhcCCCCchhhh--hcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 117 IKIVEAGALEPIISFLQSP-DLNLQEYAAAALLTLSASSVNKPFIS--ASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 117 ~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
. ...+|.|+..|.+. .=+.+..|+.++..|+... ...+. =+..+|.+...+.+..++++..|..++..++.
T Consensus 131 ~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 131 I----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp H----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred H----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 1 34578888888655 4578888999999998654 33333 36788888888888899999999999998887
Q ss_pred CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 194 HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGAL 273 (397)
Q Consensus 194 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 273 (397)
.-+|+.. ...++.|++.+..+. . +.++...|..-....+.-.... .=.+|.|.+-|...+..++..++-++
T Consensus 205 ~~~n~d~---~~~~~~~~~~~~~p~---~-~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 205 TVDNKDI---ERFIPSLIQCIADPT---E-VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVII 275 (986)
T ss_dssp GCCCTTT---GGGHHHHHHHHHCTT---H-HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred cCCCcch---hhhHHHHHHHhcChh---h-hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEE
Confidence 5444422 356889999998752 2 3455555443322222211111 01234444445566788899999999
Q ss_pred HHHhccCchhhHHHH--HHcCChHHHHHHhhc-CCHHHHHHHHHHHHHh
Q 015988 274 LMMCQSDRCKYREPI--LREGVIPGLLELTIQ-GTPKSQTKARTLLQLL 319 (397)
Q Consensus 274 ~~L~~~~~~~~r~~i--~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l 319 (397)
.|||.--+ ....+ .-...+|-|.+.... .+|++|+.|..++.-|
T Consensus 276 ~n~~~lv~--~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 276 DNMCKLVE--DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHTTCC--CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred cchhhhcC--CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 99998642 12222 235678888877765 6799999998877766
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.32 E-value=0.12 Score=53.81 Aligned_cols=240 Identities=12% Similarity=0.062 Sum_probs=150.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhc-C-CChhHHHHHHHHHHhhhcChhhHHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLR-A-PDSDHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~-~-~~~~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
..++.|...+..++...+..|+.+|+.+..++ .+... +..|+..+. . .+.+++.++..|..+..++++
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~a----i~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e----- 541 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPEA----IHDMFTYSQETQHGNITRGLAVGLALINYGRQE----- 541 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHHH----HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG-----
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHHH----HHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH-----
Confidence 45677888887777777777888887765433 22222 333333332 2 444677888888888765543
Q ss_pred HHcCChHHHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCchh
Q 015988 120 VEAGALEPIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILR-YGSQQAKFDAVMALSNLSTHPDN 197 (397)
Q Consensus 120 ~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~a~~aL~nLs~~~~~ 197 (397)
.++.+++.|. ..++.++..++-++.--.....+ ...++.|++.+. +.+..+|..|+.+|..+....+
T Consensus 542 ----~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 542 ----LADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp ----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred ----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence 5667777776 45677776665555433222222 234666666664 4578899999999988766532
Q ss_pred HHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 198 LSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 198 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
..++.++.++... .++.++..+..+|+.++.+.... .++..|..+....+..|+..|+.+|..+.
T Consensus 611 -------e~v~rlv~~L~~~-~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 611 -------TTVPRIVQLLSKS-HNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp -------SSHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3466777766554 35788899999999887655432 25567788888889999999999999997
Q ss_pred ccCchhhHHHHHHcCChHHHHHHhhc--CCHHHHHHHHHHHHHh
Q 015988 278 QSDRCKYREPILREGVIPGLLELTIQ--GTPKSQTKARTLLQLL 319 (397)
Q Consensus 278 ~~~~~~~r~~i~~~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l 319 (397)
....+.....+ .+....|.+...+ .++.++..+.-+.-.+
T Consensus 676 ~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 676 IQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred cCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 76532211111 1233445555543 3556666655444333
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.22 E-value=0.023 Score=59.75 Aligned_cols=275 Identities=12% Similarity=0.090 Sum_probs=170.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcChh---hHHHHH
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDSDHESALLALLNLAVKDEK---NKIKIV 120 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~---~~~~i~ 120 (397)
++.+.+.+...+...+..++..+..+..++......-...+..|...+..-.. -+.|+..+..++..... .--.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKT-AANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHH-HHHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCC-HHHHHHHHHHHHHhcCCCCCcccchH
Confidence 44455555554556677788888887764311110001225666666655111 27888888888853321 222332
Q ss_pred HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCchhHH
Q 015988 121 EAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYG-SQQAKFDAVMALSNLSTHPDNLS 199 (397)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~a~~aL~nLs~~~~~~~ 199 (397)
+.++.++.........++..|-.++..+...- +...+ ...+|.|+..|.+. .+..+..|+.+|..|+... ..
T Consensus 95 --~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~-~~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~ 167 (986)
T 2iw3_A 95 --QLVPAICTNAGNKDKEIQSVASETLISIVNAV-NPVAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KD 167 (986)
T ss_dssp --TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-CGGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HH
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC-CHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HH
Confidence 57888888888888889888777776665311 11111 55789999888765 6899999999999998743 23
Q ss_pred HHHh--CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 200 IILG--TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 200 ~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
.+.. ..+||.+.+.+.+. ..++...|..++..+|..-+|... ...+|.|++-+..++. ...++..|..-+
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p~~--~~~~~~~l~~~t 239 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADPTE--VPETVHLLGATT 239 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCTTH--HHHHHHHHTTCC
T ss_pred HHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcChhh--hHHHHHHhhcCe
Confidence 3332 34567777766654 357889999999999877777653 3689999999988753 333444444433
Q ss_pred ccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC---CCcccCcCchHHH
Q 015988 278 QSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY---PRSELQPDTLENI 337 (397)
Q Consensus 278 ~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~---~~~~~~~~~~~~l 337 (397)
... +.-.. .=+=.+|.|.+-|...+..++++++-++.|+++=-. .-.-|-..-+|.+
T Consensus 240 fv~--~v~~~-~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~ 299 (986)
T 2iw3_A 240 FVA--EVTPA-TLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGL 299 (986)
T ss_dssp CCS--CCCHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHH
T ss_pred eEe--eecch-hHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHH
Confidence 332 11111 001135666666666789999999999999976433 2233444555554
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.82 E-value=0.015 Score=56.51 Aligned_cols=241 Identities=13% Similarity=0.067 Sum_probs=154.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHH--Hh-HHHHHH-hhcC-----CC----hhHHHHHHHHHH
Q 015988 43 AVHRALHLIQSDDPDLKLEAAREIRRLTKTSQR--CRRQLA--QA-VQPLVL-MLRA-----PD----SDHESALLALLN 107 (397)
Q Consensus 43 ~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~--~~~~l~--~~-v~~Lv~-lL~~-----~~----~~~~~a~~~L~~ 107 (397)
..+.|+..|-+..|++|--|+.+|+.+.+.... .|..-. +. ++.++= .|+. .| .+++.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 556777777789999999999999999875321 000000 22 333222 1222 22 269999999999
Q ss_pred hhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh-hcCCHHHHHHHHhcCCHHHHHHHHH
Q 015988 108 LAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS-ASGAIPLLVEILRYGSQQAKFDAVM 186 (397)
Q Consensus 108 L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~a~~ 186 (397)
+ ..-+.. ...+..|+..+....=+++-.++-.|..+ +..+. -.++++.++.-|.+.+.+++..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 533332 34445555555666667888888888888 11111 2566778888888999999999999
Q ss_pred HHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHH
Q 015988 187 ALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAR 266 (397)
Q Consensus 187 aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~ 266 (397)
+|..++ .++.... ++..+-+.|.+-++-+.-....+.+|+.|+..+.... .....+|.|..++.+.-..||
T Consensus 322 tLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~---~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 322 LLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS---IPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC---CCSGGGGGTGGGGTCSSHHHH
T ss_pred Hhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc---cChHHHHHHHhhhcCCcHHHH
Confidence 999999 2222221 2233334444322222234667778888876664321 245788999999999999999
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHcCChHHHH-HHhhcCCHHHHHHHHHHHH
Q 015988 267 EHAVGALLMMCQSDRCKYREPILREGVIPGLL-ELTIQGTPKSQTKARTLLQ 317 (397)
Q Consensus 267 ~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~-~ll~~~~~~~~~~A~~~L~ 317 (397)
..++.+|..+... . .+..+. .++-+.++.+++.+..+-.
T Consensus 393 ~AVL~TL~tfL~~---~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLSEE---S---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCCCH---H---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---h---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999888711 1 223333 4667788888888876654
No 88
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.73 E-value=0.065 Score=46.73 Aligned_cols=223 Identities=15% Similarity=0.175 Sum_probs=143.7
Q ss_pred HHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHHc-CChHHHHHh-------hCCCC-----HHHHHHHHHHHHHHhcCC
Q 015988 88 VLMLRAPDSDHESALLALLNLAVKDEKNKIKIVEA-GALEPIISF-------LQSPD-----LNLQEYAAAALLTLSASS 154 (397)
Q Consensus 88 v~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~-g~i~~L~~l-------L~~~~-----~~~~~~a~~~L~nLs~~~ 154 (397)
+.-|..++. ++.|+..|..--...++.--.+... |.+..|+.= +..+. ..-..+|+..|-.++.++
T Consensus 9 i~~L~~p~~-Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshp 87 (268)
T 2fv2_A 9 INELSSPET-RENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHP 87 (268)
T ss_dssp HHHTSSTTT-HHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhcCchh-HHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCc
Confidence 333334555 6666555544333233334444443 555555431 12211 122356777888889999
Q ss_pred CCchhhhhcCCHHHHHHHHhcCC-----HHHHHHHHHHHHhhcCC--chhHHHHHhCCChHHHHHHhhhcccChHHHHHH
Q 015988 155 VNKPFISASGAIPLLVEILRYGS-----QQAKFDAVMALSNLSTH--PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKC 227 (397)
Q Consensus 155 ~~~~~i~~~g~i~~L~~lL~~~~-----~~~~~~a~~aL~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a 227 (397)
+.|..+......-.|..+|+..+ +-.|..+++.+..|... ++.-..+...++++..++.+..+++- -..-|
T Consensus 88 etr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gsel--SKtvA 165 (268)
T 2fv2_A 88 ETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSEL--SKTVA 165 (268)
T ss_dssp TTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHH--HHHHH
T ss_pred chhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHH--HHHHH
Confidence 99999999988888888887643 45788899999999864 34445566788999999999987542 33567
Q ss_pred HHHHHHhcCCcccchhhhhccCcHHH-------HHH-HHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHc-------C
Q 015988 228 TSLIESLVGFDEGRIVLTSEEGGVLA-------VVE-VLENGSLQAREHAVGALLMMCQSDRCKYREPILRE-------G 292 (397)
Q Consensus 228 ~~~L~nL~~~~~~~~~~~~~~g~i~~-------Lv~-lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~-------g 292 (397)
.-++..+-.++.|...+.....-+.. ++. +.+.+++..-.+++++-..|+.++ +.|+++... |
T Consensus 166 tfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~--rar~aL~~~LP~~Lrd~ 243 (268)
T 2fv2_A 166 TFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP--RAREALRQCLPDQLKDT 243 (268)
T ss_dssp HHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH--HHHHHHHHHSCGGGTSS
T ss_pred HHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH--HHHHHHHHhCcHHhhCh
Confidence 77777777777666555432222222 222 224578899999999999999875 778877651 2
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHHh
Q 015988 293 VIPGLLELTIQGTPKSQTKARTLLQLL 319 (397)
Q Consensus 293 ~v~~L~~ll~~~~~~~~~~A~~~L~~l 319 (397)
... .++ .+++.+++.-..++.|+
T Consensus 244 tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 244 TFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp TTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 222 222 36788888887777765
No 89
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.35 E-value=0.28 Score=42.76 Aligned_cols=224 Identities=17% Similarity=0.164 Sum_probs=143.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH--h-HHHH----HHhh---cCCC-----hhH-HHHHHHHHHh
Q 015988 45 HRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ--A-VQPL----VLML---RAPD-----SDH-ESALLALLNL 108 (397)
Q Consensus 45 ~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~-v~~L----v~lL---~~~~-----~~~-~~a~~~L~~L 108 (397)
..++..|. +++.|+.|+..|.+--..-++.-..+=. + +..| ++.. ..+. ..+ -+|+..|..+
T Consensus 6 ~qli~~L~--~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcv 83 (268)
T 2fv2_A 6 YQWINELS--SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCV 83 (268)
T ss_dssp HHHHHHTS--STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHH
Confidence 34444443 4456888888876644433333333322 1 3333 2222 2111 113 3455556666
Q ss_pred hhcChhhHHHHHHcCChHHHHHhhCCCC-----HHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHHhcCCHHHH
Q 015988 109 AVKDEKNKIKIVEAGALEPIISFLQSPD-----LNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEILRYGSQQAK 181 (397)
Q Consensus 109 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~ 181 (397)
+. +++.|..+.++...-.|..+|+-.+ +-++..++++++.|...++ .-..+.+.+.+|..++.++.|+.-.+
T Consensus 84 As-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSK 162 (268)
T 2fv2_A 84 AS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 162 (268)
T ss_dssp HH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred Hc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHH
Confidence 76 8999999999987777777776432 4688899999999987543 33344578999999999999999999
Q ss_pred HHHHHHHHhhcCCchhHHHHHh--------CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhh------c
Q 015988 182 FDAVMALSNLSTHPDNLSIILG--------TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTS------E 247 (397)
Q Consensus 182 ~~a~~aL~nLs~~~~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~------~ 247 (397)
.-|..++..+-.++..-..+.. ..++..++.-+... ++.++.+...++-..|+.++..+..+-. .
T Consensus 163 tvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 163 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 9999999988777655444432 12333344433333 5678999999999999998887765431 1
Q ss_pred cCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015988 248 EGGVLAVVEVLENGSLQAREHAVGALLMM 276 (397)
Q Consensus 248 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 276 (397)
.|.+. .++ .+|+.++..-...+.|+
T Consensus 242 d~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred ChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 22222 222 35788888777777776
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.042 Score=49.23 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=113.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHH--HH----HHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChh---hH
Q 015988 47 ALHLIQSDDPDLKLEAAREIRRLTKTSQRCR--RQ----LAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEK---NK 116 (397)
Q Consensus 47 lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~--~~----l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~---~~ 116 (397)
+-+.|.+.+|..|..|+..|..+....+... .. +....+.+...+.+... ++..++.++..++..... .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5578899999999999999999887542211 11 11125566667766444 678888888877652211 12
Q ss_pred H--HHHHcCChHHHHHh-hCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 117 I--KIVEAGALEPIISF-LQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 117 ~--~i~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
. ...-...++.|++- +.+....++..+..++..+......... +++.+...+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 2 22224567778764 7888888998888888777643322222 34566667788899999999988887654
Q ss_pred Cc--h--hHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 194 HP--D--NLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 194 ~~--~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
.. . +-+..+. .+++.+..++.+. +..++..|..++..+-
T Consensus 169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~--~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 169 AFGLTNVNVQTFLP-ELLKHVPQLAGHG--DRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHTTTTCCHHHHHH-HHGGGHHHHHTCS--SHHHHHHHHHHHHHHH
T ss_pred HhCCCcCCchhHHH-HHHHHHHHHHhCC--cHHHHHHHHHHHHHHH
Confidence 21 1 1111111 2334455666553 5688899998888763
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.22 E-value=0.46 Score=50.33 Aligned_cols=255 Identities=9% Similarity=0.060 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhc------CCC-hhHHHHHHHHHHhhhcChhhHHHHHHc-----CC
Q 015988 57 DLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLR------APD-SDHESALLALLNLAVKDEKNKIKIVEA-----GA 124 (397)
Q Consensus 57 ~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~------~~~-~~~~~a~~~L~~L~~~~~~~~~~i~~~-----g~ 124 (397)
..|..|...|..++..-+ ...+...++.+.+.+. +++ ..++.|+.++..++.+...... -... ..
T Consensus 376 s~R~aa~~~L~~l~~~~~--~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE--VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC-CcccccccccH
Confidence 467777778888876542 1222222444444444 222 2577888889888753110000 0000 11
Q ss_pred hH----HHHHhhCCC---CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--
Q 015988 125 LE----PIISFLQSP---DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP-- 195 (397)
Q Consensus 125 i~----~L~~lL~~~---~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~-- 195 (397)
.+ .++..|.++ .+-++..+++++..++..- . .. .-...++.++..|.++++.++..|+.+|.+++...
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~-~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~ 529 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-T-KA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES 529 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-C-HH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-C-HH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc
Confidence 11 123334555 7889999999999987632 1 11 12446777888888888999999999999998742
Q ss_pred ------h-hHHHHHh--CCChHHHHHHhhhcc---cChHHHHHHHHHHHHhcCC-cccchhhhhccCcHHHHHHHHhc--
Q 015988 196 ------D-NLSIILG--TNPIPSIVDLLIFCK---KSSKTAEKCTSLIESLVGF-DEGRIVLTSEEGGVLAVVEVLEN-- 260 (397)
Q Consensus 196 ------~-~~~~i~~--~g~i~~Lv~ll~~~~---~~~~~~~~a~~~L~nL~~~-~~~~~~~~~~~g~i~~Lv~lL~~-- 260 (397)
+ .+..+.. ..+++.|+.++.... +...-.+.++.+|..++.. .+.....+ ...++.|+..+..
T Consensus 530 ~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~ 607 (960)
T 1wa5_C 530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMA 607 (960)
T ss_dssp SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHT
T ss_pred cccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHH
Confidence 1 1333332 235566666766631 0000113344444443221 12222222 1345666666542
Q ss_pred ---CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 261 ---GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 261 ---~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
.++..+..++.+|..++....++.... .....+|.+..++........+++..++..+.
T Consensus 608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 608 KNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 356777778888888877632233222 33456788888887776777777877776664
No 92
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.03 E-value=0.3 Score=44.40 Aligned_cols=196 Identities=12% Similarity=0.069 Sum_probs=143.7
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH----HHHHHHh---HHHHHHhhcCCChhHHHHHHHHHHhhhcC
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRC----RRQLAQA---VQPLVLMLRAPDSDHESALLALLNLAVKD 112 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~----~~~l~~~---v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~ 112 (397)
..+.+..|+..|..-+.+.|..+...+.++.+..... -..+.+- +..|+.....++. -..+=..|+.+.+ .
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~di-Al~~G~mLRecir-~ 153 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEI-ALNCGIMLRECIR-H 153 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTT-HHHHHHHHHHHHT-S
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchh-HhHHHHHHHHHHH-h
Confidence 4566777888888888999999999999888765332 2233332 5566666655665 4555556777777 6
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhc-CCCCchhhhh---cCCHHHHHHHHhcCCHHHHHHHHHHH
Q 015988 113 EKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSA-SSVNKPFISA---SGAIPLLVEILRYGSQQAKFDAVMAL 188 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~---~g~i~~L~~lL~~~~~~~~~~a~~aL 188 (397)
+.....+...+.+..+...+..++-++...|..++.-+-. +......+.. ...+...-.+|.+++.-++.+++..|
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 7777778888888899999999999999999998887743 2222222222 34667777899999999999999999
Q ss_pred HhhcCCchhHHHHHh----CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc
Q 015988 189 SNLSTHPDNLSIILG----TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE 239 (397)
Q Consensus 189 ~nLs~~~~~~~~i~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~ 239 (397)
..|-.+..|...+.. ..-+..++.+|++. +..++.+|..+..-.+.++.
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~--sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc--hhchhhhhhhheeeeeeCCC
Confidence 999999888877765 23467788888875 46788999999886655443
No 93
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.69 E-value=0.63 Score=49.29 Aligned_cols=215 Identities=9% Similarity=0.085 Sum_probs=120.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhC---h----------HHHHHHHHhHHHHHHhhcCC---Ch-hHHHHHHHHHHhhhcChhh
Q 015988 53 SDDPDLKLEAAREIRRLTKTS---Q----------RCRRQLAQAVQPLVLMLRAP---DS-DHESALLALLNLAVKDEKN 115 (397)
Q Consensus 53 s~~~~~~~~a~~~L~~l~~~~---~----------~~~~~l~~~v~~Lv~lL~~~---~~-~~~~a~~~L~~L~~~~~~~ 115 (397)
+.++..+..|+.+++.++.+. . +....+. ..++..|.++ .. ++..|++++...+..- .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~---~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT---KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--T 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH---HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--C
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH---HHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--C
Confidence 567888999999999997531 0 1111122 2233334443 33 6888999999998742 1
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC---------Cchhhh--hcCCHHHHHHHHhcCC---HH--
Q 015988 116 KIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSV---------NKPFIS--ASGAIPLLVEILRYGS---QQ-- 179 (397)
Q Consensus 116 ~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~---------~~~~i~--~~g~i~~L~~lL~~~~---~~-- 179 (397)
... -...++.++..|.+++..++..|+.+|.+++...+ .+..+. -...++.|+.++.... ..
T Consensus 491 ~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~ 568 (960)
T 1wa5_C 491 KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA 568 (960)
T ss_dssp HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence 221 23357778888888889999999999999986421 233333 1445666677776641 11
Q ss_pred HHHHHHHHHHhhcCC-chhHHHHHhCCChHHHHHHhhh---cccChHHHHHHHHHHHHhcCC--cccchhhhhccCcHHH
Q 015988 180 AKFDAVMALSNLSTH-PDNLSIILGTNPIPSIVDLLIF---CKKSSKTAEKCTSLIESLVGF--DEGRIVLTSEEGGVLA 253 (397)
Q Consensus 180 ~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~~a~~~L~nL~~~--~~~~~~~~~~~g~i~~ 253 (397)
....+..+|..+... .+....... ..++.|...+.. +.++......++.+|..++.. ++....+ ....++.
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~--~~~~~p~ 645 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL--VDSMMPT 645 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH--HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH--HHHHHHH
Confidence 223445555554331 111111111 233445444433 223455556677777777554 2222222 3446677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 254 VVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 254 Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
+...|.....+..+.+..++..+.
T Consensus 646 ~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 646 FLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHH
Confidence 777777655555666666666554
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.48 E-value=1 Score=47.60 Aligned_cols=298 Identities=14% Similarity=0.041 Sum_probs=155.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHH--cCChHHHH
Q 015988 52 QSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVE--AGALEPII 129 (397)
Q Consensus 52 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~--~g~i~~L~ 129 (397)
..+++.++..+++++..++..-......+...++.++..|+++ .++..|+.++..++.... ..+.. ...+..|.
T Consensus 499 ~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~-~V~~~A~~al~~l~~~~~---~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 499 SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNP-ELSVSSVSTLKKICRECK---YDLPPYAANIVAVSQ 574 (963)
T ss_dssp CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCG-GGHHHHHHHHHHHHHHTG---GGCTTTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHH
Confidence 4467889999999999988642222334444488888888664 358999999999987432 22211 12333444
Q ss_pred HhhCCC--CHHHHHHHHHHHHHHhcCCCCchhhh--hcCCHHHHHHHHh----c-CCHHHHH---HHHHHHHhhcCC---
Q 015988 130 SFLQSP--DLNLQEYAAAALLTLSASSVNKPFIS--ASGAIPLLVEILR----Y-GSQQAKF---DAVMALSNLSTH--- 194 (397)
Q Consensus 130 ~lL~~~--~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~L~~lL~----~-~~~~~~~---~a~~aL~nLs~~--- 194 (397)
.++..+ +.+.+.....++..+...-+ ..... -...++.+...+. . .+++.+. ..+.+|..+...
T Consensus 575 ~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~ 653 (963)
T 2x19_B 575 DVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDI 653 (963)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555542 56778888888888875332 11111 1234444444443 2 2444444 233333333211
Q ss_pred --ch---------------hHHHH--HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCC-cccchhhhhccCcHHHH
Q 015988 195 --PD---------------NLSII--LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGF-DEGRIVLTSEEGGVLAV 254 (397)
Q Consensus 195 --~~---------------~~~~i--~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~-~~~~~~~~~~~g~i~~L 254 (397)
+. .+..+ ....+++.+..++.....+..+.+.++.++..++.. .+... ..++.+
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~------~~l~~~ 727 (963)
T 2x19_B 654 SHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA------PMVPQL 727 (963)
T ss_dssp SCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG------GGHHHH
T ss_pred CcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc------ccHHHH
Confidence 10 11111 112345556666665444567888899998887432 11111 234444
Q ss_pred HHHH----hc-CCHHHHHHHHHHHHHHhc--cCchhhHHHHHH--cCChHHHHHHhhc---CCHHHHHHHHHHHHHhhcC
Q 015988 255 VEVL----EN-GSLQAREHAVGALLMMCQ--SDRCKYREPILR--EGVIPGLLELTIQ---GTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 255 v~lL----~~-~~~~v~~~a~~~L~~L~~--~~~~~~r~~i~~--~g~v~~L~~ll~~---~~~~~~~~A~~~L~~l~~~ 322 (397)
+..+ .. +.+. .+.++..++. ..++.....+.+ ...+..+..++.. ..+.+++....++..+...
T Consensus 728 ~~~l~~~~~~~~~~~----~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~ 803 (963)
T 2x19_B 728 CEMLGRMYSTIPQAS----ALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKR 803 (963)
T ss_dssp HHHHHHHHHHSCCHH----HHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccH----HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHh
Confidence 4443 22 2232 3344444433 221122233322 2234444555542 4689999998888877643
Q ss_pred CCCCcccCcCc-hHHHHHHhhccCccchhh--HHHHHHHHHHHHHh
Q 015988 323 PYPRSELQPDT-LENIVCNIISQIDGDEQS--GKAKKMLAEMVQVS 365 (397)
Q Consensus 323 ~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~--~~A~~~L~~l~~~~ 365 (397)
.. ...+.... +..++..+.+.....+.. +.+...+..+...+
T Consensus 804 ~~-~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 804 KP-DLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp CG-GGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred Cc-HHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 22 12233333 555554443222222222 77888888777654
No 95
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.47 E-value=0.066 Score=48.62 Aligned_cols=160 Identities=11% Similarity=0.029 Sum_probs=100.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHH----HhhCC-CCHHHHHHHHHHHHHHhcCCCCch
Q 015988 84 VQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVEAGALEPII----SFLQS-PDLNLQEYAAAALLTLSASSVNKP 158 (397)
Q Consensus 84 v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~----~lL~~-~~~~~~~~a~~~L~nLs~~~~~~~ 158 (397)
+..+..+++.+...+.-++..++.+.. ++.....+.+.+.-..++ ..+.+ ..+..+-.++++++|+-.+...+.
T Consensus 105 l~~l~kil~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAINCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHHTSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHcCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 566667765544447888888888877 666666665543333333 33332 355668889999999988877766
Q ss_pred hhhh--cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHH-HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 159 FISA--SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSII-LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 159 ~i~~--~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
.+.. ...++.+...+.+.+..++..++..+.|++......... ....++..+..++... .+.+....++.+|++|.
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~-~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV-QDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 6653 224444444445568899999999999998631110000 0011334444555543 45678899999999998
Q ss_pred CCcccchhhh
Q 015988 236 GFDEGRIVLT 245 (397)
Q Consensus 236 ~~~~~~~~~~ 245 (397)
..+.....+.
T Consensus 263 ~~~~~~~~la 272 (304)
T 3ebb_A 263 SDDSNAVQLA 272 (304)
T ss_dssp TTCHHHHHHH
T ss_pred hCChhHHHHH
Confidence 6655444444
No 96
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.35 E-value=1 Score=47.61 Aligned_cols=298 Identities=11% Similarity=0.021 Sum_probs=152.8
Q ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCChhHHHHHHHHHHhhhcChhhHHHHHH--cCChHHHHHh
Q 015988 54 DDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDSDHESALLALLNLAVKDEKNKIKIVE--AGALEPIISF 131 (397)
Q Consensus 54 ~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~--~g~i~~L~~l 131 (397)
.++.+|..++++|..++..-......+...++.++..|+ +. ++..|+.++..++... +..+.. ...+..|..+
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~---~~~l~p~~~~ll~~l~~~ 592 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN-SS-MSAQATLGLKELCRDC---QLQLKPYADPLLNACHAS 592 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHH---HHhccccHHHHHHHHHHH
Confidence 378999999999999986422223344444777777774 44 4999999999999643 333432 2455666677
Q ss_pred hCCC--CHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHH----hcC--CHHHHHHHHHHHHhhcCC-----c-
Q 015988 132 LQSP--DLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEIL----RYG--SQQAKFDAVMALSNLSTH-----P- 195 (397)
Q Consensus 132 L~~~--~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL----~~~--~~~~~~~a~~aL~nLs~~-----~- 195 (397)
+..+ +.+.+..+..++..++..-+ .+... -...++.++..+ ... +.+.+.....+|..|+.. .
T Consensus 593 l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 593 LNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY-LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH-HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence 7763 56778888888888865321 11111 122334444333 222 333344444444443321 0
Q ss_pred --hh------HHHHH--hCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc--CCH
Q 015988 196 --DN------LSIIL--GTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN--GSL 263 (397)
Q Consensus 196 --~~------~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~ 263 (397)
+. ...+. ...+++.+..++.....+..+.+.+++++..++..-.. .+ ...++.+++.+.. .+.
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~---~p~l~~~~~~l~~~~~~~ 746 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF---QPMLQDLCLFIVASFQTR 746 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-------CTHHHHHHHHHHHHCC--
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--hc---cccHHHHHHHHHHHHhcC
Confidence 00 01111 13467777777765433568899999999987543211 11 1235666666531 111
Q ss_pred HHHHHHHHHHHHHhccCc--hhhHHHHHH--cCChHHHHHHhhc-------CCHHHHHHHHHHHHHhhc-CCCCCcccCc
Q 015988 264 QAREHAVGALLMMCQSDR--CKYREPILR--EGVIPGLLELTIQ-------GTPKSQTKARTLLQLLRD-SPYPRSELQP 331 (397)
Q Consensus 264 ~v~~~a~~~L~~L~~~~~--~~~r~~i~~--~g~v~~L~~ll~~-------~~~~~~~~A~~~L~~l~~-~~~~~~~~~~ 331 (397)
.. ..+++.+..++..-+ +.+...+.+ ......+..++.. ..|.+++.....+..+.. ++. ..+..
T Consensus 747 ~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~--~~~~s 823 (971)
T 2x1g_F 747 CC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ--VLEDK 823 (971)
T ss_dssp CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG--GGGCT
T ss_pred Cc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH--HHcCC
Confidence 11 235666666655321 123333333 2233444444433 367788888777766644 342 23333
Q ss_pred Cc-hHHHHHHhhccCccchh-h-HHHHHHHHHHHHHh
Q 015988 332 DT-LENIVCNIISQIDGDEQ-S-GKAKKMLAEMVQVS 365 (397)
Q Consensus 332 ~~-~~~ll~~l~~~~~~~~~-~-~~A~~~L~~l~~~~ 365 (397)
.. ++.++..........+. . +.+...+..+...+
T Consensus 824 ~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~ 860 (971)
T 2x1g_F 824 TLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQS 860 (971)
T ss_dssp TSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 33 45544433221111222 2 56666776665543
No 97
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.93 E-value=0.29 Score=43.32 Aligned_cols=175 Identities=13% Similarity=0.062 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHhhhcChhhHHHHHHcCC-hHHHHHhhCCCCHHHHHHHHHHHHHHhc---CCCCchhhh-hcCCHHHHHH
Q 015988 97 DHESALLALLNLAVKDEKNKIKIVEAGA-LEPIISFLQSPDLNLQEYAAAALLTLSA---SSVNKPFIS-ASGAIPLLVE 171 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~~~~i~~~g~-i~~L~~lL~~~~~~~~~~a~~~L~nLs~---~~~~~~~i~-~~g~i~~L~~ 171 (397)
.+..++..|......+++ ..+...+. ++.+.-.+.+.+..+...++.+|..+.. ..+.+-.-. ..-.+|.|+.
T Consensus 62 ~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lve 139 (266)
T 2of3_A 62 QHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLL 139 (266)
T ss_dssp HHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 355566666665443322 11111111 2222223336688888777777777532 111111111 2447889988
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcH
Q 015988 172 ILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGV 251 (397)
Q Consensus 172 lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i 251 (397)
-+.+....+|..+-.+|..+.... --..+++.+++-+++. +.+.+..++..+..+....... . ..++
T Consensus 140 KlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~G~~-~----~~~l 206 (266)
T 2of3_A 140 KTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSK--NARQRSECLLVIEYYITNAGIS-P----LKSL 206 (266)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHCSG-G----GGGG
T ss_pred HhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCC-c----cccc
Confidence 888888889988888877665321 0122445566666553 4678889988888774322111 1 2367
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHH
Q 015988 252 ---LAVVEVLENGSLQAREHAVGALLMMCQSDRCKYRE 286 (397)
Q Consensus 252 ---~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~ 286 (397)
+.+..++.+.|..||..|+.++..+...-++..++
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999999887654334443
No 98
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.46 E-value=0.1 Score=45.43 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=95.8
Q ss_pred CCChHHHHHHhhhc---------ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 204 TNPIPSIVDLLIFC---------KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALL 274 (397)
Q Consensus 204 ~g~i~~Lv~ll~~~---------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 274 (397)
.+|+..|+.+|... ..+......++.+|..+.....+...++...+.+..|...|.++++.++..++.+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 45666777666542 112456788999999999999999988877788999999998899999999999999
Q ss_pred HHhccCchhh-HHHHHHc----------CChHHHHHHhhc-CCHHHHHHHHHHHHHhhcCCC-------CCcccCcCchH
Q 015988 275 MMCQSDRCKY-REPILRE----------GVIPGLLELTIQ-GTPKSQTKARTLLQLLRDSPY-------PRSELQPDTLE 335 (397)
Q Consensus 275 ~L~~~~~~~~-r~~i~~~----------g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~-------~~~~~~~~~~~ 335 (397)
.+|..+++++ ...+.++ .-...+++.+.. .+...+......+..+..++. .+..|...|+.
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 201 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 201 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9998763235 4444321 234456665543 444556566666777766654 23445567788
Q ss_pred HHHHHhh
Q 015988 336 NIVCNII 342 (397)
Q Consensus 336 ~ll~~l~ 342 (397)
+++.++.
T Consensus 202 ~il~~l~ 208 (233)
T 2f31_A 202 QVLQELR 208 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777764
No 99
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.34 E-value=0.93 Score=40.98 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHhhhcChhhHHHHHHc--CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh-hcCCHHHHHHHH
Q 015988 97 DHESALLALLNLAVKDEKNKIKIVEA--GALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS-ASGAIPLLVEIL 173 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~L~~lL 173 (397)
.+..+++++.|+.. ++..+..+... ..++.+...+...+..++..++.++.|++........+- ....+..+..++
T Consensus 164 n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il 242 (304)
T 3ebb_A 164 NQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTIL 242 (304)
T ss_dssp HHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 47889999999998 67788877752 334445555556788999999999999986321000111 111344444555
Q ss_pred h-cCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHH
Q 015988 174 R-YGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIE 232 (397)
Q Consensus 174 ~-~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~ 232 (397)
. ..+.|..+.++.+|.+|...+.....+.+.=.+...++-+.+.....++ ..|++.|.
T Consensus 243 ~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv-~~~~~~~~ 301 (304)
T 3ebb_A 243 EVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKV-SECCRFIL 301 (304)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHH-HHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhH-HHHHHHHH
Confidence 4 3588999999999999998765555555432333333333333233454 55555544
No 100
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.96 E-value=6.5 Score=41.39 Aligned_cols=133 Identities=10% Similarity=0.044 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhh---cccChHHHHHHHHHHHHhcCCcccchhhhhccCcHH
Q 015988 176 GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIF---CKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVL 252 (397)
Q Consensus 176 ~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~ 252 (397)
.+...++.++.++..++....... ...++.++.++.. .++++.++..++.+|..++..-......+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 567788999999999987532111 1334445554422 11357788999999998865322211222 23566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH--cCChHHHHHHhhc--CCHHHHHHHHHHHHHhhc
Q 015988 253 AVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR--EGVIPGLLELTIQ--GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 253 ~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~--~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~ 321 (397)
.|+..|. +.++..|+.++.++|.. .+..+.. ...+..+.+++.. .+...+..+..++..+..
T Consensus 550 ~l~~~l~---~~v~~~A~~al~~l~~~----~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 550 LLVRGLN---SSMSAQATLGLKELCRD----CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHH---SSCHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC---hHHHHHHHHHHHHHHHH----HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 7777773 67899999999999964 3444443 4567777777776 356777777777666644
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.96 E-value=2.5 Score=37.26 Aligned_cols=175 Identities=11% Similarity=0.109 Sum_probs=109.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH--h-HHHHHHhhcCCC-hhHHHHHHHHHHhhhc--ChhhHHHH
Q 015988 46 RALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQ--A-VQPLVLMLRAPD-SDHESALLALLNLAVK--DEKNKIKI 119 (397)
Q Consensus 46 ~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~-v~~Lv~lL~~~~-~~~~~a~~~L~~L~~~--~~~~~~~i 119 (397)
.+...+-+.+...+..|+..|......+++ ..+.. . ++.+.-.+.+++ .+...++..|..+... ...++-.-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 455555667888888999999887765432 22222 1 333332222323 2456666666665320 01111111
Q ss_pred HH-cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhH
Q 015988 120 VE-AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNL 198 (397)
Q Consensus 120 ~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~ 198 (397)
.+ .-.+|.|++-+....+.++..+-.++..+..- .-....++.+..-+++.|..++..++..+..+-......
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 12 23579999999988889998888877766531 112346777778888899999999999888875432111
Q ss_pred HHHHhCCCh---HHHHHHhhhcccChHHHHHHHHHHHHh
Q 015988 199 SIILGTNPI---PSIVDLLIFCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 199 ~~i~~~g~i---~~Lv~ll~~~~~~~~~~~~a~~~L~nL 234 (397)
....+ +.+..++.+. +..++..|+.++..+
T Consensus 202 ----~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVAC 234 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 12357 8888888874 567888888887744
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.73 Score=40.90 Aligned_cols=184 Identities=17% Similarity=0.106 Sum_probs=111.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHhcCCC---Cchh-hhh-cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCch----hH
Q 015988 128 IISFLQSPDLNLQEYAAAALLTLSASSV---NKPF-ISA-SGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPD----NL 198 (397)
Q Consensus 128 L~~lL~~~~~~~~~~a~~~L~nLs~~~~---~~~~-i~~-~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~----~~ 198 (397)
|-+-|.+.+=..|..++..|..+..... .... +.. ....+.+-..+.+.|..++..++.+|..++.... ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5567777777888888888877654221 1111 111 2345556677888999999999999988865311 11
Q ss_pred HHHH--hCCChHHHHHH-hhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015988 199 SIIL--GTNPIPSIVDL-LIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLM 275 (397)
Q Consensus 199 ~~i~--~~g~i~~Lv~l-l~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 275 (397)
.... -..+++.|+.= +.+ ....++..+..++..++....... ..+..++..+.+.+|.++..++..|..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~--~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTS--SRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1111 12345555542 333 235677778887776543222111 134566667788899999999999988
Q ss_pred HhccCchh-h-HHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 276 MCQSDRCK-Y-REPILREGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 276 L~~~~~~~-~-r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
+...-+.. . -...+ ..+++.+.+++.+.++.||..|..++--+-
T Consensus 166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 75431111 1 11111 235667788899999999999998876664
No 103
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.76 E-value=7.8 Score=40.69 Aligned_cols=221 Identities=15% Similarity=0.079 Sum_probs=125.2
Q ss_pred hhHHHHHHH-hcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-CC-hhHHHHHHHHHHhhhcC-----h
Q 015988 42 SAVHRALHL-IQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-PD-SDHESALLALLNLAVKD-----E 113 (397)
Q Consensus 42 ~~l~~lv~l-L~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~~-~~~~~a~~~L~~L~~~~-----~ 113 (397)
..+..++.. ..+.+++.|.+|-..|..+-..+ + +...+..+|.. .+ .++..|+..|.+....+ +
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p-~-------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSP-Q-------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHST-T-------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCH-H-------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 335555554 45678888999988887765543 2 23444555654 33 36888888888876522 2
Q ss_pred hhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc-----CCHHHHHHHHHHH
Q 015988 114 KNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY-----GSQQAKFDAVMAL 188 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~~~~~a~~aL 188 (397)
+.+..+ +...++.+... ..++..++...+.++..++..+-.. ..++.++.|+..+.+ +++.....++.+|
T Consensus 96 ~~~~~i-r~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~---~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL 170 (963)
T 2x19_B 96 DQYESL-KAQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPD---AWPCAVADMVRLFQAEDSPVDGQGRCLALLELL 170 (963)
T ss_dssp GGHHHH-HHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcc---ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 223333 22233344332 2245778888888888887653211 157889999998876 3556677788887
Q ss_pred HhhcCC---c---hhH-HHHHh--CCChHHHHHH----hhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHH
Q 015988 189 SNLSTH---P---DNL-SIILG--TNPIPSIVDL----LIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVV 255 (397)
Q Consensus 189 ~nLs~~---~---~~~-~~i~~--~g~i~~Lv~l----l~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv 255 (397)
..++.. . ..+ ..+.+ ...++.++.+ +........+...++.++......+.. .. .....++.++
T Consensus 171 ~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~--~~-~~~~ll~~l~ 247 (963)
T 2x19_B 171 TVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP--LQ-DCEALIQAAF 247 (963)
T ss_dssp HHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC--GG-GTHHHHHHHH
T ss_pred HhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC--cc-cchHHHHHHH
Confidence 777631 1 011 11111 1224444444 333322224677788877654432211 11 1234566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhccC
Q 015988 256 EVLENGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 256 ~lL~~~~~~v~~~a~~~L~~L~~~~ 280 (397)
+.+. +++.++.|+.++..+....
T Consensus 248 ~~l~--~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 248 AALQ--DSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp HHTT--STTTHHHHHHHHHHHHTCT
T ss_pred HHhC--CchHHHHHHHHHHHHHccc
Confidence 6663 5668888999999887753
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.66 E-value=2.2 Score=45.37 Aligned_cols=137 Identities=8% Similarity=0.002 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHhhhChH--HHHHHHHhHHHHHHhhcC-----CCh-hHHHHHHHHHHhhhcChhhHHHHHHcCCh
Q 015988 54 DDPDLKLEAAREIRRLTKTSQR--CRRQLAQAVQPLVLMLRA-----PDS-DHESALLALLNLAVKDEKNKIKIVEAGAL 125 (397)
Q Consensus 54 ~~~~~~~~a~~~L~~l~~~~~~--~~~~l~~~v~~Lv~lL~~-----~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~g~i 125 (397)
.+|..+..++++++.++..-.+ -...+.+.++.|++++.. +.. ++..++++++..+.--..+...+ ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 5799999999999999976422 345566668999998863 112 34456688887765221111111 2345
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh------cCCHHHHHHHH----hcCCHHHHHHHHHHHHhhcCC
Q 015988 126 EPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA------SGAIPLLVEIL----RYGSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 126 ~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~------~g~i~~L~~lL----~~~~~~~~~~a~~aL~nLs~~ 194 (397)
..|++.+..+++.++..|+.++.+++.. ++..+.. ...++.++..+ ..-+......+..++..+...
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5567777777889999999999999963 3333431 12344444333 334555666666666666654
No 105
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.63 E-value=0.074 Score=51.73 Aligned_cols=252 Identities=12% Similarity=0.096 Sum_probs=145.8
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHHc--CChHHHHHhhC---C----C---CHHHHHHHHHHHHHHh
Q 015988 85 QPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVEA--GALEPIISFLQ---S----P---DLNLQEYAAAALLTLS 151 (397)
Q Consensus 85 ~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~--g~i~~L~~lL~---~----~---~~~~~~~a~~~L~nLs 151 (397)
..|+.-|-+ ...++--|+.+|+.+.+.....-...... ...-.|+-++. - + -..+|+.++.+|..+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL- 255 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI- 255 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence 334433333 33358888889999877443211110111 22222322221 1 1 246899999999998
Q ss_pred cCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHh-CCChHHHHHHhhhcccChHHHHHHHHH
Q 015988 152 ASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILG-TNPIPSIVDLLIFCKKSSKTAEKCTSL 230 (397)
Q Consensus 152 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 230 (397)
.+=+.. ..++..|+..+..+..+++..++-.|..+ +..+.. .++++.++.-|.+. +.+++..|+.+
T Consensus 256 ~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~--DDDVRAVAAet 322 (800)
T 3oc3_A 256 YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP--DEDIKLLSAEL 322 (800)
T ss_dssp TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc--ccHHHHHHHHH
Confidence 533322 34555555555778899999999999998 111111 23455566656654 46788888999
Q ss_pred HHHhcCCcccchhhhhccCcHHHHHHHHhcCC--HHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHH
Q 015988 231 IESLVGFDEGRIVLTSEEGGVLAVVEVLENGS--LQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKS 308 (397)
Q Consensus 231 L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~ 308 (397)
|.-++ .+ ..+ ...+..+.+.|.+-+ ..-.......|..|+..+. .. -.....+|.|.+++++.-+.|
T Consensus 323 LiPIA-~p----~~l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-~a---~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 323 LCHFP-IT----DSL--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-EL---SIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HTTSC-CS----STH--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-TC---CCCSGGGGGTGGGGTCSSHHH
T ss_pred hhhhc-ch----hhH--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-cc---ccChHHHHHHHhhhcCCcHHH
Confidence 88777 11 111 234556666665422 1224567778888887762 11 122478999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCccchhh-HHHHHHHH---HHHHHhHHHhHHH
Q 015988 309 QTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDGDEQS-GKAKKMLA---EMVQVSMEQSLRH 372 (397)
Q Consensus 309 ~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~A~~~L~---~l~~~~~~~~~~~ 372 (397)
|..+..+|..+. ....+.-+++.+.. ...+.. +.+.++.+ .|.+.|.+--|-.
T Consensus 392 R~AVL~TL~tfL---------~~~~LRLIFQNILL--E~neeIl~lS~~VWk~r~~Ll~~wi~L~MtP 448 (800)
T 3oc3_A 392 RTSILNMVKNLS---------EESIDFLVAEVVLI--EEKDEIREMAIKLLKKRRDLPKNLILHFMNV 448 (800)
T ss_dssp HHHHHHHTTTCC---------CHHHHHHHHHHHHH--CSCHHHHHHHHHHHHTCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------hhhHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999886555 22344444555543 222222 55555554 5566665544433
No 106
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.55 E-value=3.6 Score=37.61 Aligned_cols=127 Identities=9% Similarity=0.071 Sum_probs=94.5
Q ss_pred HHhhcC-CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh-cCCHHH
Q 015988 188 LSNLST-HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE-NGSLQA 265 (397)
Q Consensus 188 L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v 265 (397)
|.||-. +.+.-.-+++..++..+...+... +..+....+.+|...+....-+..-. ...++.++..+. ++++++
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp--N~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP--NNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecC--CcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcce
Confidence 344444 444457788888999999888874 56888999999988776665544433 357788888886 678999
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc-------CCHHHHHHHHHHHHHh
Q 015988 266 REHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ-------GTPKSQTKARTLLQLL 319 (397)
Q Consensus 266 ~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~-------~~~~~~~~A~~~L~~l 319 (397)
.....+.|.|...+. ...++..+..|+++.|.+.+.. .+..-+..|++++++.
T Consensus 342 vYSGTGFLSNVVAHK-q~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHK-QHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHHHSTTC-HHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred EEecchHHHHHHhcc-cchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 999999999999886 4566666789999999987754 2345566777777665
No 107
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.53 E-value=0.27 Score=46.15 Aligned_cols=143 Identities=16% Similarity=0.160 Sum_probs=102.3
Q ss_pred HHHHhCCChHHHHHHhhhc---------ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHH
Q 015988 199 SIILGTNPIPSIVDLLIFC---------KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHA 269 (397)
Q Consensus 199 ~~i~~~g~i~~Lv~ll~~~---------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a 269 (397)
+.++ .+|+..|+.+|..- ..+......++.+|..+..+..+...++.....+..|...|.+.++.++..+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 4444 45677787777531 1234677889999999998888999888778889999999999999999999
Q ss_pred HHHHHHHhccCchhh-HHHHHH----------cCChHHHHHHhhc-CCHHHHHHHHHHHHHhhcCCC-------CCcccC
Q 015988 270 VGALLMMCQSDRCKY-REPILR----------EGVIPGLLELTIQ-GTPKSQTKARTLLQLLRDSPY-------PRSELQ 330 (397)
Q Consensus 270 ~~~L~~L~~~~~~~~-r~~i~~----------~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~-------~~~~~~ 330 (397)
+.+|..+|..+++++ ...+.+ ..-...++..+.. .+...+..+..++..+..++. .+..|.
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 262 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM 262 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999998763222 434433 2346667777765 455666666777777776654 234555
Q ss_pred cCchHHHHHHhh
Q 015988 331 PDTLENIVCNII 342 (397)
Q Consensus 331 ~~~~~~ll~~l~ 342 (397)
..|+.+++..+.
T Consensus 263 ~~Gl~~il~~lr 274 (383)
T 3eg5_B 263 RLGLHQVLQELR 274 (383)
T ss_dssp HTTHHHHHHHHT
T ss_pred HCChHHHHHHHh
Confidence 678888888774
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.93 E-value=1.9 Score=41.20 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHH
Q 015988 134 SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDL 213 (397)
Q Consensus 134 ~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~l 213 (397)
.++...+..|+..+.....+-+. ....++..++.++.+++..+|.+|+..|..+|.+ ++... +.+.|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHH
Confidence 34567777788888777653322 2344788999999999999999999999999988 54333 35678999
Q ss_pred hhhcccC-hHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 015988 214 LIFCKKS-SKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMMC 277 (397)
Q Consensus 214 l~~~~~~-~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L~ 277 (397)
|.+..+. ..++..++..|..+ .-.+.+..|...+..+++.+|+.++..|..=.
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~-----------Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKM-----------DAKGTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHH-----------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HhccchHHHHHHHHHHHHHHhc-----------ChHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 9875321 22344444444321 12456677777777778899999888886543
No 109
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.70 E-value=0.39 Score=45.14 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=97.1
Q ss_pred CChHHHHHHhhhc---------ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015988 205 NPIPSIVDLLIFC---------KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLM 275 (397)
Q Consensus 205 g~i~~Lv~ll~~~---------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 275 (397)
+|+..|+.+|..- ..+......++.+|..+..+..+...++...+++..+...|.++++.++..++.+|..
T Consensus 47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~a 126 (386)
T 2bnx_A 47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA 126 (386)
T ss_dssp HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 5566666666431 1124567889999999998988988888777889999999988889999999999999
Q ss_pred HhccCchhh-HHHHHH----------cCChHHHHHHhh-cCCHHHHHHHHHHHHHhhcCCC-------CCcccCcCchHH
Q 015988 276 MCQSDRCKY-REPILR----------EGVIPGLLELTI-QGTPKSQTKARTLLQLLRDSPY-------PRSELQPDTLEN 336 (397)
Q Consensus 276 L~~~~~~~~-r~~i~~----------~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~-------~~~~~~~~~~~~ 336 (397)
+|..+++++ ...+.+ ..-...++..+. +.+...+......+..+..++. .+..|...|+.+
T Consensus 127 lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~ 206 (386)
T 2bnx_A 127 LCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ 206 (386)
T ss_dssp HHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH
T ss_pred HHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH
Confidence 998764234 333332 224455666665 3445666666667777776654 234566678888
Q ss_pred HHHHhh
Q 015988 337 IVCNII 342 (397)
Q Consensus 337 ll~~l~ 342 (397)
++..|.
T Consensus 207 il~~Lr 212 (386)
T 2bnx_A 207 VLQELR 212 (386)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888774
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.00 E-value=0.1 Score=45.76 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=56.4
Q ss_pred HHhcCCCHHHHHHHHHHH-----HHHhhh-ChHHHHHHHHh--HHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHH
Q 015988 49 HLIQSDDPDLKLEAAREI-----RRLTKT-SQRCRRQLAQA--VQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 49 ~lL~s~~~~~~~~a~~~L-----~~l~~~-~~~~~~~l~~~--v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
.++.++++.+|..++..+ ..+..+ ++..|...... .+.|..++++++. ++..++.. +
T Consensus 57 ~ll~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~---l----------- 122 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADR---L----------- 122 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHH---S-----------
T ss_pred HHhcCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHh---C-----------
Confidence 556778899999988643 333332 24455555443 4455555555443 44444442 1
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHH
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMA 187 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~a 187 (397)
..+.|..+++.++..++..++.. +. .+.+..+++++++.++..++..
T Consensus 123 ----~~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 123 ----PLEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDRQVRKLVAKR 169 (244)
T ss_dssp ----CTGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCHHHHHHHHHH
T ss_pred ----CHHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCHHHHHHHHHc
Confidence 12235555667777777776652 11 1123344556667777666653
No 111
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=91.67 E-value=2.1 Score=39.12 Aligned_cols=128 Identities=11% Similarity=0.124 Sum_probs=96.5
Q ss_pred HHHHhcCCC-CchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHH
Q 015988 147 LLTLSASSV-NKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAE 225 (397)
Q Consensus 147 L~nLs~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 225 (397)
|.||-.++. .-..++..+++..+..+...++.++....+..|...+....-+..-. ...++.++..+.-+ ++.+++.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h-~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIH-PDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccC-CCcceEE
Confidence 455666664 56778899999999999999999999999999888876544332222 35688888888865 4568899
Q ss_pred HHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc-------CCHHHHHHHHHHHHHH
Q 015988 226 KCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN-------GSLQAREHAVGALLMM 276 (397)
Q Consensus 226 ~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-------~~~~v~~~a~~~L~~L 276 (397)
...+.|.|...+....+.+....|+|..|-..+.. .+..-+..++++++|-
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 99999999999988888777788999988888753 2334455566666654
No 112
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.59 E-value=1.9 Score=37.22 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=89.1
Q ss_pred cCCHHHHHHHHhc-----------CCHHHHHHHHHHHHhhcCCchhHHHHHh-CCChHHHHHHhhhcccChHHHHHHHHH
Q 015988 163 SGAIPLLVEILRY-----------GSQQAKFDAVMALSNLSTHPDNLSIILG-TNPIPSIVDLLIFCKKSSKTAEKCTSL 230 (397)
Q Consensus 163 ~g~i~~L~~lL~~-----------~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 230 (397)
.+|+..|+.+|.. .+......++.+|..+.........+.. .+.+..|+..+.+. ...+...++.+
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~r~~~leL 119 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT--SHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHHH
Confidence 4566666665542 1346677888999998887666665655 66788888877653 56778889999
Q ss_pred HHHhcCCcc--c-chhhhh---------ccCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCc-----hhhHHHHHHcC
Q 015988 231 IESLVGFDE--G-RIVLTS---------EEGGVLAVVEVLEN-GSLQAREHAVGALLMMCQSDR-----CKYREPILREG 292 (397)
Q Consensus 231 L~nL~~~~~--~-~~~~~~---------~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~-----~~~r~~i~~~g 292 (397)
|..+|..++ + ...+.. +..-...+++.++. .+.+.+..++..+-.+....+ -..|..+...|
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 988887664 5 444431 11234456666653 345665555555555555442 13455555667
Q ss_pred ChHHHHHHhhcCCHHHHHH
Q 015988 293 VIPGLLELTIQGTPKSQTK 311 (397)
Q Consensus 293 ~v~~L~~ll~~~~~~~~~~ 311 (397)
..+.+-++-...++.....
T Consensus 200 l~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 200 LHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHhccCCHHHHHH
Confidence 5555544444456655443
No 113
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.25 E-value=2.8 Score=39.23 Aligned_cols=144 Identities=13% Similarity=0.149 Sum_probs=90.7
Q ss_pred cCCHHHHHHHHhc-----------CCHHHHHHHHHHHHhhcCCchhHHHHHh-CCChHHHHHHhhhcccChHHHHHHHHH
Q 015988 163 SGAIPLLVEILRY-----------GSQQAKFDAVMALSNLSTHPDNLSIILG-TNPIPSIVDLLIFCKKSSKTAEKCTSL 230 (397)
Q Consensus 163 ~g~i~~L~~lL~~-----------~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 230 (397)
.+|+..|+.+|.. .+......++.||..+.........+.. ...+..|+..+.+. ...+...++.+
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~~~~aleL 185 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKL 185 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTT--SHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCC--chHHHHHHHHH
Confidence 5677888877742 2346778888999999877666655555 66788888888764 46778889999
Q ss_pred HHHhcCCcc--c-chhhhh---------ccCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCc-h----hhHHHHHHcC
Q 015988 231 IESLVGFDE--G-RIVLTS---------EEGGVLAVVEVLEN-GSLQAREHAVGALLMMCQSDR-C----KYREPILREG 292 (397)
Q Consensus 231 L~nL~~~~~--~-~~~~~~---------~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~-~----~~r~~i~~~g 292 (397)
|..+|..++ + ...++. +..-...++..|+. .+.+.+..++..+-.+....+ - ..|..+...|
T Consensus 186 L~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 265 (383)
T 3eg5_B 186 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 265 (383)
T ss_dssp HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 998887764 3 444331 22335567777765 456666666666655655442 1 3445555667
Q ss_pred ChHHHHHHhhcCCHHH
Q 015988 293 VIPGLLELTIQGTPKS 308 (397)
Q Consensus 293 ~v~~L~~ll~~~~~~~ 308 (397)
..+.+-++-...++.+
T Consensus 266 l~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 266 LHQVLQELREIENEDM 281 (383)
T ss_dssp HHHHHHHHTTSCCHHH
T ss_pred hHHHHHHHhcCCChhH
Confidence 5555554333344433
No 114
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=91.13 E-value=8.7 Score=41.04 Aligned_cols=222 Identities=11% Similarity=0.023 Sum_probs=134.5
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC--CChhHHHHHHHHHHhhhc-----
Q 015988 39 SASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA--PDSDHESALLALLNLAVK----- 111 (397)
Q Consensus 39 ~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~----- 111 (397)
.+-..++.++..+.+++.+.|.+|-..|..+-..+ +.. ..+..+|.. +..++..|+..|.+....
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp-~aw-------~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L 96 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP-DAW-------TRVDTILEFSQNMNTKYYGLQILENVIKTRWKIL 96 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS-CHH-------HHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGS
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc-hHH-------HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhC
Confidence 35677888888888888888888888887665543 332 333344444 223688888888887652
Q ss_pred ChhhHHHHHHcCChHHHHHhhCC-----CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHH
Q 015988 112 DEKNKIKIVEAGALEPIISFLQS-----PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVM 186 (397)
Q Consensus 112 ~~~~~~~i~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~ 186 (397)
.++.+. ..+...+..+...-.. .++.++...+.++..+...+-.. .++..++.++..+.. ++......+.
T Consensus 97 ~~e~~~-~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~ 171 (1073)
T 3gjx_A 97 PRNQCE-GIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMV 171 (1073)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHH
T ss_pred CHHHHH-HHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHH
Confidence 122222 2233334444443322 24556666777777776533110 257788888888864 4456667777
Q ss_pred HHHhhcCC-ch--------h-----HHHHHhCCChHHHHHH----hhhcccChHHHHHHHHHHHHhcCCcccchhhhhcc
Q 015988 187 ALSNLSTH-PD--------N-----LSIILGTNPIPSIVDL----LIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEE 248 (397)
Q Consensus 187 aL~nLs~~-~~--------~-----~~~i~~~g~i~~Lv~l----l~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~ 248 (397)
+|..|+.. .+ . +..+... ++.++.+ +... .+..+...++.+|..+...-+. ..++ +.
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~i-~~i~-~~ 246 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIPL-GYIF-ET 246 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT-HHHH-SS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcCH-HHhc-cc
Confidence 77777642 10 1 1222222 4555544 4333 3567778899999998877643 3344 66
Q ss_pred CcHHHHH-HHHhcCCHHHHHHHHHHHHHHhccC
Q 015988 249 GGVLAVV-EVLENGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 249 g~i~~Lv-~lL~~~~~~v~~~a~~~L~~L~~~~ 280 (397)
+.++.|+ .+| +++..+..|+.+|..+....
T Consensus 247 ~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 247 KLISTLIYKFL--NVPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp SHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHhc--CChHHHHHHHHHHHHHHhcc
Confidence 6777664 444 56889999999999998753
No 115
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.02 E-value=8.9 Score=34.83 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=142.9
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC-CCchhhhh--cCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcC
Q 015988 118 KIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS-VNKPFISA--SGAIPLLVEILRY-GSQQAKFDAVMALSNLST 193 (397)
Q Consensus 118 ~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~--~g~i~~L~~lL~~-~~~~~~~~a~~aL~nLs~ 193 (397)
.+...+.+..|+..|..=+.+.+..+..+..++.... ..+...++ ..--+.|..++.. +++++-..+-..|+....
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 3566788889999999889999999998888886543 22222211 1122222223322 356666677778888888
Q ss_pred CchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh-cCCcccchhhhhccC---cHHHHHHHHhcCCHHHHHHH
Q 015988 194 HPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL-VGFDEGRIVLTSEEG---GVLAVVEVLENGSLQAREHA 269 (397)
Q Consensus 194 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL-~~~~~~~~~~~~~~g---~i~~Lv~lL~~~~~~v~~~a 269 (397)
.....+.+...+.+..+.+.++.+ .-++...|...+..| ..+......++ ..+ .....-.+|.+++=-++..+
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefL-~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFL-EQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHH-HHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhccHHHHHHHH-HHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 888888888887788888888764 456778888888877 33333333333 222 35667778889998899999
Q ss_pred HHHHHHHhccCc-hhhHHHHH-HcCChHHHHHHhhcCCHHHHHHHHHHHHHhhcCCC
Q 015988 270 VGALLMMCQSDR-CKYREPIL-REGVIPGLLELTIQGTPKSQTKARTLLQLLRDSPY 324 (397)
Q Consensus 270 ~~~L~~L~~~~~-~~~r~~i~-~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 324 (397)
+..|..+-.... .......+ +..-+..+..+|++.+..+|..|-.+...+..+|.
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 999999977531 12222223 34568889999999999999999999999988886
No 116
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=89.52 E-value=0.25 Score=43.25 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=34.7
Q ss_pred HHHhcCCHHHHHHHHHH-----HHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHH
Q 015988 256 EVLENGSLQAREHAVGA-----LLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKART 314 (397)
Q Consensus 256 ~lL~~~~~~v~~~a~~~-----L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~ 314 (397)
.+++.++..|+..++.. |..+...++...|..+.+.-+.+.|..+ .+.+..|++.|..
T Consensus 177 ~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l~~~~L~~L-~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALREL-DEPDPEVRLAIAG 239 (244)
T ss_dssp GSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSCHHHHHHC-CCCCHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHc-cCCCHHHHHHHHH
Confidence 45556667777776643 3333444445666666664445655555 6677777777754
No 117
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=89.34 E-value=8.5 Score=41.02 Aligned_cols=223 Identities=14% Similarity=0.050 Sum_probs=126.8
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC--CChhHHHHHHHHHHhhhc-----C
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA--PDSDHESALLALLNLAVK-----D 112 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~--~~~~~~~a~~~L~~L~~~-----~ 112 (397)
+-..+..++..+.+++...|.+|-..|..+-..+ + ....+..+|.. +..++..|+..|.+.... .
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p-~-------~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~ 85 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP-D-------AWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST-T-------GGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc-h-------HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCC
Confidence 3445556666566677778888888887765443 2 22233333332 333688888888887642 2
Q ss_pred hhhHHHHHHcCChHHHHHhhCCC-----CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHH
Q 015988 113 EKNKIKIVEAGALEPIISFLQSP-----DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMA 187 (397)
Q Consensus 113 ~~~~~~i~~~g~i~~L~~lL~~~-----~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~a 187 (397)
++.|..+ +...+..+...-..+ +..++...+.++..++..+-. -.+++.++.|+..+. .++..+..++.+
T Consensus 86 ~~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~Wp~ll~~L~~~~~-~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 86 NDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNWPEFIPELIGSSS-SSVNVCENNMIV 160 (1049)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHHc-cChHHHHHHHHH
Confidence 2223333 222223332221111 356677777778887754311 025778999999886 566667777777
Q ss_pred HHhhcCC-----c----hhH-----HHHHh--CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcH
Q 015988 188 LSNLSTH-----P----DNL-----SIILG--TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGV 251 (397)
Q Consensus 188 L~nLs~~-----~----~~~-----~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i 251 (397)
|..|+.. . ..+ ..+.. ..++..+..++... .+..+...++.++.+....-+. ..++ +...+
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~~-~~~~-~~~ll 237 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIPY-RYIY-ETNIL 237 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSCT-HHHH-SSSHH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCH-HHHh-hhhHH
Confidence 7777631 1 111 12222 11233344555543 3456788899999887654442 2233 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 252 LAVVEVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 252 ~~Lv~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
+.+.+.+. .++.++..|+.+|..+...
T Consensus 238 ~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 238 ELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 66663332 2788889999999888765
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.77 E-value=5.5 Score=38.05 Aligned_cols=128 Identities=20% Similarity=0.150 Sum_probs=87.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHHHHc
Q 015988 44 VHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKIVEA 122 (397)
Q Consensus 44 l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~ 122 (397)
...++.. .++++..++-|+..|..+.+.-|+..+ +++..++.++.+.|. ++..|+..|-.+|++ ++-..+
T Consensus 31 y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~---~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki--- 101 (507)
T 3u0r_A 31 YQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELAD---SAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV--- 101 (507)
T ss_dssp HHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHH---HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH---
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH---
Confidence 3344443 356788999999999999987766553 247788888888665 799999999999985 554444
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 015988 123 GALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALS 189 (397)
Q Consensus 123 g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~ 189 (397)
+..|+.+|+.+++.-....-.+|..+-..+ ..+.+..|+..+..+++.+|+.++..|.
T Consensus 102 --aDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 102 --ADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp --HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 457889999877654444444444443211 1345666666666677788888777764
No 119
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.02 E-value=1.4 Score=46.86 Aligned_cols=140 Identities=11% Similarity=0.108 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHhhcCCch-h-HHHHHhCCChHHHHHHhhhcc---cChHHHHHHHHHHHHhcCCcccchhhhhccCc
Q 015988 176 GSQQAKFDAVMALSNLSTHPD-N-LSIILGTNPIPSIVDLLIFCK---KSSKTAEKCTSLIESLVGFDEGRIVLTSEEGG 250 (397)
Q Consensus 176 ~~~~~~~~a~~aL~nLs~~~~-~-~~~i~~~g~i~~Lv~ll~~~~---~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~ 250 (397)
.+...++.+++++..++.... . -..++ ..+++.|+.++.... +...+...++.+|+..+..-....... ...
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~v 541 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV 541 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHH
Confidence 468999999999999997633 2 12222 235677888776421 112233355566665544322222222 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHH----------cCChHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 015988 251 VLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILR----------EGVIPGLLELTIQGTPKSQTKARTLLQLLR 320 (397)
Q Consensus 251 i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~----------~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~ 320 (397)
+..|++.+..+++.+++.|++++.++|.. ++..+.. ...+..+......-++..+..+..++..+.
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~----c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQK----CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH----HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHH----HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44455555556789999999999999974 4445542 112223333333345555566666666665
Q ss_pred cC
Q 015988 321 DS 322 (397)
Q Consensus 321 ~~ 322 (397)
..
T Consensus 618 ~~ 619 (1023)
T 4hat_C 618 SE 619 (1023)
T ss_dssp TT
T ss_pred Hh
Confidence 44
No 120
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=87.92 E-value=5.2 Score=34.41 Aligned_cols=96 Identities=22% Similarity=0.168 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhhh-cChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhh-cCCHHHHHHHHh
Q 015988 97 DHESALLALLNLAV-KDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISA-SGAIPLLVEILR 174 (397)
Q Consensus 97 ~~~~a~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~-~g~i~~L~~lL~ 174 (397)
+++.+..++..++. .+++ ..++.+.....+++..++..|...+..-+..... . .. .-.++.|-.+..
T Consensus 120 Vre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~--k-~dp~~ll~iL~~L~~ 188 (240)
T 3l9t_A 120 VQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF--K-ENPNEAIRRIADLKE 188 (240)
T ss_dssp HHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT--T-TCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh--h-cCHHHHHHHHHHhcC
Confidence 57777777777664 2332 2567788888999999998887766542221100 0 11 123444445556
Q ss_pred cCCHHHHHHHHHHHHhhcCC-chhHHHHHh
Q 015988 175 YGSQQAKFDAVMALSNLSTH-PDNLSIILG 203 (397)
Q Consensus 175 ~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~ 203 (397)
+++.-++....+.|..++.. ++-...+++
T Consensus 189 D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 189 DVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 67888999999999999985 444444443
No 121
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=87.80 E-value=15 Score=38.78 Aligned_cols=314 Identities=11% Similarity=0.066 Sum_probs=155.3
Q ss_pred hHHHHHHHhc-----CCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHH--hhcCC-ChhHHHHHHHHHHhhhcChh
Q 015988 43 AVHRALHLIQ-----SDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVL--MLRAP-DSDHESALLALLNLAVKDEK 114 (397)
Q Consensus 43 ~l~~lv~lL~-----s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~--lL~~~-~~~~~~a~~~L~~L~~~~~~ 114 (397)
.++.+..++. ...+.+|..+++++..++.--......+...++.++. .+.++ ..++..|+.++.++++...
T Consensus 491 l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~- 569 (980)
T 3ibv_A 491 LSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK- 569 (980)
T ss_dssp HHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh-
Confidence 4566666665 5678999999999999987532222333333555555 55443 3369999999999988543
Q ss_pred hHHHHHHcCChHHHHHhhC----C-----CC----------------HHHHHHHHHHHHHHhcC---C-CCchhhhhcCC
Q 015988 115 NKIKIVEAGALEPIISFLQ----S-----PD----------------LNLQEYAAAALLTLSAS---S-VNKPFISASGA 165 (397)
Q Consensus 115 ~~~~i~~~g~i~~L~~lL~----~-----~~----------------~~~~~~a~~~L~nLs~~---~-~~~~~i~~~g~ 165 (397)
..+ .+.++.++..+. . .+ .+-+.....++..+... + +.+... -...
T Consensus 570 --~~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~-l~~l 644 (980)
T 3ibv_A 570 --KQV--VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALY-CDSL 644 (980)
T ss_dssp --TTC--SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHH-HHHH
T ss_pred --HHh--hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHH-HHHH
Confidence 223 234555555442 1 11 11233344444444421 1 122221 1233
Q ss_pred HHHHHHHHh----cC----CHHH-HHHHHHHHHhhcCCc-h--hH-HHHHh--CCChHHHHHHhhhcccChHHHHHHHHH
Q 015988 166 IPLLVEILR----YG----SQQA-KFDAVMALSNLSTHP-D--NL-SIILG--TNPIPSIVDLLIFCKKSSKTAEKCTSL 230 (397)
Q Consensus 166 i~~L~~lL~----~~----~~~~-~~~a~~aL~nLs~~~-~--~~-~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~ 230 (397)
+++++.-+. .. +... ..+.+.+|..++..- + ++ ..+.. ..+.+.+...+.....+..+++.+..+
T Consensus 645 l~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~ 724 (980)
T 3ibv_A 645 INALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFT 724 (980)
T ss_dssp HHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 444443332 21 2222 224566667776531 1 11 00111 233455666666655567888999999
Q ss_pred HHHhcCCcccchhhhhccCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCchhhHHHHHH--cCChHHHHHHhhc---C
Q 015988 231 IESLVGFDEGRIVLTSEEGGVLAVVEVLEN-GSLQAREHAVGALLMMCQSDRCKYREPILR--EGVIPGLLELTIQ---G 304 (397)
Q Consensus 231 L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~--~g~v~~L~~ll~~---~ 304 (397)
+..+...-... + ...++.+++.+-. -+..--...++.+..+...-+.+....+.+ .-.+..+..++.. +
T Consensus 725 ~~r~i~~lg~~--~---~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~ 799 (980)
T 3ibv_A 725 SGRIINVVGPD--M---LPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQG 799 (980)
T ss_dssp HHHHTTTTHHH--H---TTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHccHh--H---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99885543221 1 2456777766542 132223446666666655433333332222 1233333444443 1
Q ss_pred CHH------HHHHHHHHHHHhhcCCCCCcccC---cCchHHHHHHhhcc-Cc-cchhh-HHHHHHHHHHHHHhHH
Q 015988 305 TPK------SQTKARTLLQLLRDSPYPRSELQ---PDTLENIVCNIISQ-ID-GDEQS-GKAKKMLAEMVQVSME 367 (397)
Q Consensus 305 ~~~------~~~~A~~~L~~l~~~~~~~~~~~---~~~~~~ll~~l~~~-~~-~~~~~-~~A~~~L~~l~~~~~~ 367 (397)
++. +++.=...+..+..+.-..-.+. .+.++.++..+... .+ +...+ +.|...|.++++.|-.
T Consensus 800 td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~ 874 (980)
T 3ibv_A 800 TDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGG 874 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCC
Confidence 222 33333345555544332222222 24566666655311 11 33334 7888999999999954
No 122
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=87.45 E-value=6 Score=36.94 Aligned_cols=133 Identities=11% Similarity=0.134 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhhcCCchhHHHHHh-CCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc--c-chhhhh------
Q 015988 177 SQQAKFDAVMALSNLSTHPDNLSIILG-TNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE--G-RIVLTS------ 246 (397)
Q Consensus 177 ~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~--~-~~~~~~------ 246 (397)
+......++.||..+.........+.. .+++..++..+.+. ...+...++.+|..+|..++ + ...++.
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~ 148 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 148 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 356677888899998887665555555 66788888877653 46777888988888887664 5 443331
Q ss_pred ---ccCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCc-----hhhHHHHHHcCChHHHHHHhhcCCHHHHHH
Q 015988 247 ---EEGGVLAVVEVLEN-GSLQAREHAVGALLMMCQSDR-----CKYREPILREGVIPGLLELTIQGTPKSQTK 311 (397)
Q Consensus 247 ---~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~-----~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~ 311 (397)
+..-...+++.+.. .+.+.+..++..+-.+....+ -..|..+...|..+.+-++-...++.+...
T Consensus 149 ~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 149 EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 12234556666653 445666666665655655543 134556666675555544444455554433
No 123
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.01 E-value=1.6 Score=34.49 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=57.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~ 321 (397)
++..|...|.++++.++..|+.+|..+..+.+......+.+...+..|++++...++.++++...++..-+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 566777778888999999999999999887655566666666677788888888889999999998876654
No 124
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.27 E-value=2 Score=34.92 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=57.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc-CCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ-GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 321 (397)
++..|...|.++++.++..|+.+|..+..+.+......+.+...+..|++++.. .++.|++++..++..-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 556777788889999999999999999887655667677777788888888865 668999999988876644
No 125
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=83.52 E-value=18 Score=32.35 Aligned_cols=149 Identities=10% Similarity=0.041 Sum_probs=88.2
Q ss_pred HHHHHHhhhc----ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHH--hcCCHHHHHHHHHHHHHHhccCc
Q 015988 208 PSIVDLLIFC----KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVL--ENGSLQAREHAVGALLMMCQSDR 281 (397)
Q Consensus 208 ~~Lv~ll~~~----~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL--~~~~~~v~~~a~~~L~~L~~~~~ 281 (397)
..+..+++++ .++......++.-|..++-+.+.=..++. .. ...|-.++ ....+.+++.++++|...-++++
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~-~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIIT-HE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHH-HH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHh-Cc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 3455556554 11123457777777777776654444442 11 23333333 23457899999999999999884
Q ss_pred hhhHHHHHH--cCChHHHHHHhhc-------CCHHHHHHHHHHHHHhhcCCCCCcccCcCchHHHHHHhhccCccchhh-
Q 015988 282 CKYREPILR--EGVIPGLLELTIQ-------GTPKSQTKARTLLQLLRDSPYPRSELQPDTLENIVCNIISQIDGDEQS- 351 (397)
Q Consensus 282 ~~~r~~i~~--~g~v~~L~~ll~~-------~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~- 351 (397)
..-+.|.+ ...+..+..-+.. ....++++-+++|.-|..++ .-|...++..|+..+..+ ...+.+
T Consensus 103 -~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F~~~~m~~L~~ly~~~-~~d~~~k 177 (315)
T 3qml_C 103 -PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDLPIYSTVVLQNVYERN-NKDKQLQ 177 (315)
T ss_dssp -HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC--CCHHHHHHHHHHT-TTCHHHH
T ss_pred -HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---HhhhhccHHHHHHHHccC-CCCHHHH
Confidence 55555554 4566666654433 34456666688999998887 334566777776555432 223344
Q ss_pred HHHHHHHHHHHH
Q 015988 352 GKAKKMLAEMVQ 363 (397)
Q Consensus 352 ~~A~~~L~~l~~ 363 (397)
.|+..++..+-.
T Consensus 178 ~Kvl~li~d~f~ 189 (315)
T 3qml_C 178 IKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 777777766553
No 126
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=82.66 E-value=2.1 Score=34.08 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=58.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc------CCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ------GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 321 (397)
++..|..-|.++++.++..|+.+|..+..+.+......+.+...+..|++++.. .++.++++...++..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777778889999999999999999887655677778778888889988864 467999999988876654
No 127
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.56 E-value=2.9 Score=33.29 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=59.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhh------cCCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTI------QGTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~------~~~~~~~~~A~~~L~~l~~ 321 (397)
++..|..-|.++++.++..|+.+|..+..+.+......|.+...+..|++++. ..++.++++...++..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 56677778888999999999999999988776566777777778888999885 3578999999998877654
No 128
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=81.91 E-value=2.6 Score=34.46 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=58.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc------CCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ------GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~ 321 (397)
++..|...|.++++.++..|+.+|..+..+.+......+.+...+..|++++.. .++.|++++..++..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999887655677777778888899998852 467999999998876654
No 129
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=81.49 E-value=57 Score=34.40 Aligned_cols=211 Identities=11% Similarity=0.064 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcC-C--Ch-hHHHHHHHHHHhhhcChhh----HHHHHHcCChH
Q 015988 55 DPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRA-P--DS-DHESALLALLNLAVKDEKN----KIKIVEAGALE 126 (397)
Q Consensus 55 ~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~-~--~~-~~~~a~~~L~~L~~~~~~~----~~~i~~~g~i~ 126 (397)
++..|.+|-..|..+-+.+ +. ......+|.. + +. ++..|+..|.+....-+.. .....+...+.
T Consensus 21 d~~~r~~A~~~L~~~q~sp-~a-------w~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~ 92 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSSS-TG-------WKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWS 92 (980)
T ss_dssp CHHHHHHHHHHHHHHHHST-TH-------HHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCh-hH-------HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHH
Confidence 6888888988888776654 22 2334445544 2 33 6777887777765421111 22222333333
Q ss_pred HHHHhhC-CCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCH-HHHHHHHHHHHhhcCC---------c
Q 015988 127 PIISFLQ-SPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQ-QAKFDAVMALSNLSTH---------P 195 (397)
Q Consensus 127 ~L~~lL~-~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~a~~aL~nLs~~---------~ 195 (397)
.+...-. .+..-++...+.++..+...+-. -.+++.++.++.++.+++. ......+.+|..++.. .
T Consensus 93 ~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~ 169 (980)
T 3ibv_A 93 YIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTD 169 (980)
T ss_dssp HHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCH
Confidence 3333110 23456788888888888754311 1357789999998877544 3444555555533221 0
Q ss_pred h--h-----HHHHHhC---CChHHHHHHhhhc--ccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCH
Q 015988 196 D--N-----LSIILGT---NPIPSIVDLLIFC--KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSL 263 (397)
Q Consensus 196 ~--~-----~~~i~~~---g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 263 (397)
+ . ++.+.+. .+++.+..++... ..+..++..++.+|......-+. ..++ +...++.+..+|. ++
T Consensus 170 ~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~-~~~ll~~l~~~L~--~~ 245 (980)
T 3ibv_A 170 VQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIV-NEPCMNLLYSFLQ--IE 245 (980)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHH-CHHHHHHHHHHTT--SH
T ss_pred HHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-Hhhh-cchHHHHHHHHcC--Ch
Confidence 0 1 2222221 1234444555441 13456788899999888775433 2333 5567777777775 48
Q ss_pred HHHHHHHHHHHHHhccC
Q 015988 264 QAREHAVGALLMMCQSD 280 (397)
Q Consensus 264 ~v~~~a~~~L~~L~~~~ 280 (397)
.+++.|+.+|..+....
T Consensus 246 ~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 246 ELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 89999999999997764
No 130
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=81.49 E-value=29 Score=31.00 Aligned_cols=148 Identities=11% Similarity=0.015 Sum_probs=97.6
Q ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcc
Q 015988 166 IPLLVEILRYG------SQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDE 239 (397)
Q Consensus 166 i~~L~~lL~~~------~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~ 239 (397)
+.....+++++ +.+....|+..|..+|.+.+.=-.|.+.. .+.|-.++........+.+.+.++|...-+++.
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 44455667776 45567889999999999877666666522 445555553332345688999999988777665
Q ss_pred cchhhhhc--cCcHHHHHHHHhc-------CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhcC--CHHH
Q 015988 240 GRIVLTSE--EGGVLAVVEVLEN-------GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQG--TPKS 308 (397)
Q Consensus 240 ~~~~~~~~--~g~i~~Lv~lL~~-------~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~~--~~~~ 308 (397)
.....+.+ ...+..+..-|.. ....++..-+++|..|...+. .. ...++..|.+++... ++.+
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHH
Confidence 44433322 2334444443332 345778889999999998752 22 245678888888777 8999
Q ss_pred HHHHHHHHHHhh
Q 015988 309 QTKARTLLQLLR 320 (397)
Q Consensus 309 ~~~A~~~L~~l~ 320 (397)
|.++..++..+-
T Consensus 177 k~Kvl~li~d~f 188 (315)
T 3qml_C 177 QIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999998876653
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=80.44 E-value=65 Score=34.33 Aligned_cols=132 Identities=15% Similarity=0.052 Sum_probs=76.5
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHHhc----CCCC-chhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc
Q 015988 125 LEPIISFLQS----PDLNLQEYAAAALLTLSA----SSVN-KPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHP 195 (397)
Q Consensus 125 i~~L~~lL~~----~~~~~~~~a~~~L~nLs~----~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~ 195 (397)
+..+..++.+ .++.++..+.-++..|.. +... ...++ ......|.+.+..++.+-+..++.+|.|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence 4445566654 355666666666665543 2222 21211 11233344445667778888899999998752
Q ss_pred hhHHHHHhCCChHHHHHHhhh-----cccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHh--cCCHHHHHH
Q 015988 196 DNLSIILGTNPIPSIVDLLIF-----CKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLE--NGSLQAREH 268 (397)
Q Consensus 196 ~~~~~i~~~g~i~~Lv~ll~~-----~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~--~~~~~v~~~ 268 (397)
..++.|..++.. .....+++..|+.+|.+++... . ..+-+.++.++. ..++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~---p-----~~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD---P-----RKVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---H-----HHHHHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc---h-----HHHHHHHHHHhcCCCCChHHHHH
Confidence 245666666642 1112467778888888775321 1 113356777774 456888888
Q ss_pred HHHHHHH
Q 015988 269 AVGALLM 275 (397)
Q Consensus 269 a~~~L~~ 275 (397)
|+.+|..
T Consensus 534 A~~~Lm~ 540 (1056)
T 1lsh_A 534 SCIVFFE 540 (1056)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888865
No 132
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=78.35 E-value=26 Score=37.37 Aligned_cols=127 Identities=14% Similarity=0.056 Sum_probs=85.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc-------CCHHHHHHHHHHHHhhcCCchhHHHH
Q 015988 129 ISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY-------GSQQAKFDAVMALSNLSTHPDNLSII 201 (397)
Q Consensus 129 ~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~-------~~~~~~~~a~~aL~nLs~~~~~~~~i 201 (397)
.+.+...+.+-+..++.+|.|+.. +..++.|..++.. ....++..|+++|+.++.....
T Consensus 446 ~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---- 511 (1056)
T 1lsh_A 446 SQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---- 511 (1056)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH----
T ss_pred HHHHhcCChHHHHHHHHHhhccCC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH----
Confidence 334456677777888999999965 2356666666632 2357888899999998853211
Q ss_pred HhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhc-CCHHHHHHHHHHHHHHhccC
Q 015988 202 LGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLEN-GSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 202 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~ 280 (397)
-+-+.+..+..+...+..++..|+.+|..... ....+..+...+.. ++..|.......|.+++...
T Consensus 512 ---~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P----------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 512 ---KVQEIVLPIFLNVAIKSELRIRSCIVFFESKP----------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp ---HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCC----------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred ---HHHHHHHHHhcCCCCChHHHHHHHHHHHHHCc----------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 12245777776666677888888887763211 22345666677764 67888889999999998876
Q ss_pred ch
Q 015988 281 RC 282 (397)
Q Consensus 281 ~~ 282 (397)
.+
T Consensus 579 ~P 580 (1056)
T 1lsh_A 579 NP 580 (1056)
T ss_dssp SG
T ss_pred Cc
Confidence 43
No 133
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=78.29 E-value=31 Score=37.42 Aligned_cols=220 Identities=10% Similarity=0.076 Sum_probs=117.2
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhh--cC-CChhHHHHHHHHHHhhhc-----Ch
Q 015988 44 VHRALHLIQSD--DPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLML--RA-PDSDHESALLALLNLAVK-----DE 113 (397)
Q Consensus 44 l~~lv~lL~s~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL--~~-~~~~~~~a~~~L~~L~~~-----~~ 113 (397)
+..++..+.+. +...|.+|-..|..+-..++ +...+...| .+ +..++..|+..|.+.... .+
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~--------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP--------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT--------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 44444433343 66788888888877755431 222222222 22 223677888888887642 22
Q ss_pred hhHHHHHHcCChHHHHHhhCC---CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 114 KNKIKIVEAGALEPIISFLQS---PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 114 ~~~~~i~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
+.|..+ +...+..+...-.. .+..++...+.++..++..+-- -..++.++.|+.++.+ ++..++.++.+|..
T Consensus 85 e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~ 159 (1204)
T 3a6p_A 85 LEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLR 159 (1204)
T ss_dssp HHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 333333 22333333332111 3567888888888888764321 1257889999998876 55667778888887
Q ss_pred hcCC---c----hhHH-----HHHhC--CChHHHHHHhhhc-----------------ccChHHHHHHHHHHHHhcCCcc
Q 015988 191 LSTH---P----DNLS-----IILGT--NPIPSIVDLLIFC-----------------KKSSKTAEKCTSLIESLVGFDE 239 (397)
Q Consensus 191 Ls~~---~----~~~~-----~i~~~--g~i~~Lv~ll~~~-----------------~~~~~~~~~a~~~L~nL~~~~~ 239 (397)
|+.. . ..+. .+... .++..+..++... .....+...++.++.+......
T Consensus 160 L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~ 239 (1204)
T 3a6p_A 160 LAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS 239 (1204)
T ss_dssp HHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred HHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Confidence 7542 1 1111 12221 1223333444331 0123456677777766544322
Q ss_pred cchhhhhccC--cHHHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q 015988 240 GRIVLTSEEG--GVLAVVEVLENGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 240 ~~~~~~~~~g--~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~ 280 (397)
. ..++ +.. .++.+..++. ++.++..|+.+|..+....
T Consensus 240 ~-~~i~-~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 240 M-SHIT-AENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp H-HHHH-TTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred H-HHHH-hccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 2 1122 221 4455554443 4667888888888887643
No 134
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=76.89 E-value=12 Score=39.87 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhhcCCchhH--HHHHhCCChHHHHHHhhhc---ccChHHHHHHHHHHHHhcCCcccchhhhhccCc
Q 015988 176 GSQQAKFDAVMALSNLSTHPDNL--SIILGTNPIPSIVDLLIFC---KKSSKTAEKCTSLIESLVGFDEGRIVLTSEEGG 250 (397)
Q Consensus 176 ~~~~~~~~a~~aL~nLs~~~~~~--~~i~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~ 250 (397)
.+...++.++.++..++..-... ..+. ..+++.+..+.... .+...+...++.++...+..-......+ ..+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~v 541 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV 541 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHH
Confidence 46788999999999988642111 1111 11233333332211 1122233357777776654322222332 245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 015988 251 VLAVVEVLENGSLQAREHAVGALLMMCQS 279 (397)
Q Consensus 251 i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~ 279 (397)
++.++..+.++++.++..|+.++.++|..
T Consensus 542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 67777777777899999999999999974
No 135
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=75.33 E-value=6.2 Score=34.44 Aligned_cols=150 Identities=11% Similarity=0.055 Sum_probs=88.8
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHhhhcChhhHHHHHHcCChHHHHH-hhCCCCHHHHHHHHHHHHHHhcCCC-Cchhh
Q 015988 84 VQPLVLMLRA-PDSDHESALLALLNLAVKDEKNKIKIVEAGALEPIIS-FLQSPDLNLQEYAAAALLTLSASSV-NKPFI 160 (397)
Q Consensus 84 v~~Lv~lL~~-~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nLs~~~~-~~~~i 160 (397)
...+..++.. | . +..++..++.+..+.+.. +.+..++. .+.+.++..+-.++++++|+-.+.. .+..+
T Consensus 58 ~~~~~ki~~~WP-~-~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~ 128 (253)
T 3gae_A 58 LSFANTIRSNWE-I-KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLL 128 (253)
T ss_dssp HHHHHHHHHHCS-C-CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHHHHHHhCC-c-cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHH
Confidence 3444455544 5 3 677888888887743321 22222222 2335567788899999999998887 56655
Q ss_pred hhcCCHHHHHHHHhc--------CCHHHHHHHHHHHHhhcCCchh-HHHHHhCCChHHHHHHhhh----c---ccChHHH
Q 015988 161 SASGAIPLLVEILRY--------GSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLLIF----C---KKSSKTA 224 (397)
Q Consensus 161 ~~~g~i~~L~~lL~~--------~~~~~~~~a~~aL~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~----~---~~~~~~~ 224 (397)
........++..+.+ .+..++..++..+.|++..... +. +......+++.+.. . .++.+..
T Consensus 129 ~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~ 205 (253)
T 3gae_A 129 ESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAA 205 (253)
T ss_dssp TSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHH
T ss_pred hcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHH
Confidence 544334444444311 2567888888899999863111 10 12233455555542 1 1246778
Q ss_pred HHHHHHHHHhcCCcccchhhh
Q 015988 225 EKCTSLIESLVGFDEGRIVLT 245 (397)
Q Consensus 225 ~~a~~~L~nL~~~~~~~~~~~ 245 (397)
..++.+|++|...+....++.
T Consensus 206 yR~LvAlGtL~~~~~~~~~~a 226 (253)
T 3gae_A 206 YRLTVAYGNLATVEPTLRQFA 226 (253)
T ss_dssp HHHHHHHHHHHHHSGGGGCCT
T ss_pred HHHHHHHHHHHhCcHHHHHHh
Confidence 889999999976555444443
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.91 E-value=5.2 Score=34.30 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=57.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc-CCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ-GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 321 (397)
++..|..-|.++++.++..|+.+|..+..+.+......|.+...+..|++++.. .++.|++++..++..-+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 566778888889999999999999999887655566677767777778888755 567899999998877654
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=71.44 E-value=6.7 Score=33.38 Aligned_cols=72 Identities=8% Similarity=0.008 Sum_probs=57.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHHHHHHhhc-CCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPGLLELTIQ-GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~ 321 (397)
++..|..-|.++++.++..|+.+|..+..+-+......|.+...+..|++++.. .++.+++++..++..-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 556777788889999999999999999887655566777776788888888765 457999999988876653
No 138
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=70.20 E-value=7 Score=30.65 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=51.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchhhHHHHHHcC-ChHHHHHHhhcCC--------HHHHHHHHHHHHHhh
Q 015988 250 GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCKYREPILREG-VIPGLLELTIQGT--------PKSQTKARTLLQLLR 320 (397)
Q Consensus 250 ~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g-~v~~L~~ll~~~~--------~~~~~~A~~~L~~l~ 320 (397)
++..|..-|...++.++..++.+|..|+.+..+..+..+.+.- .|..+..+--..+ ..||+.|-.++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 5567788888888999999999999999877666666666532 2333322211111 488999999999986
Q ss_pred cCC
Q 015988 321 DSP 323 (397)
Q Consensus 321 ~~~ 323 (397)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 139
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=68.40 E-value=1.4e+02 Score=32.36 Aligned_cols=256 Identities=10% Similarity=0.039 Sum_probs=138.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHh-HHHHHHhhcC----CChhHHHHHHHHHHhhhcC-hhhHHHHH
Q 015988 52 QSDDPDLKLEAAREIRRLTKT-----SQRCRRQLAQA-VQPLVLMLRA----PDSDHESALLALLNLAVKD-EKNKIKIV 120 (397)
Q Consensus 52 ~s~~~~~~~~a~~~L~~l~~~-----~~~~~~~l~~~-v~~Lv~lL~~----~~~~~~~a~~~L~~L~~~~-~~~~~~i~ 120 (397)
.+.++.+|..|+..|.+.... +++.+..+++. +..+...... +..++...+.++..++... +...
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W---- 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW---- 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----
Confidence 355789999999999988754 45677777775 5555544221 2235677777777777631 2111
Q ss_pred HcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcC---CCC----ch-----hhhh--cCCHHHHHHHHhc-----------
Q 015988 121 EAGALEPIISFLQSPDLNLQEYAAAALLTLSAS---SVN----KP-----FISA--SGAIPLLVEILRY----------- 175 (397)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~---~~~----~~-----~i~~--~g~i~~L~~lL~~----------- 175 (397)
.+.++.|+.++++ ++...+.++.+|..++.+ .+. +. .+.+ ...++.+..++..
T Consensus 133 -p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 133 -PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp -TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3456777777766 455677788888888642 111 11 1111 1223333334432
Q ss_pred --------CCHHHHHHHHHHHHhhcCCchhHHHHHhCC--ChHHHHHHhhhcccChHHHHHHHHHHHHhcCCc---ccch
Q 015988 176 --------GSQQAKFDAVMALSNLSTHPDNLSIILGTN--PIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFD---EGRI 242 (397)
Q Consensus 176 --------~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~---~~~~ 242 (397)
++..+...++.++.+....-.. ..+.+.. .++.+..++.. ..+...|+.+|..+.... +.+.
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~----~~lr~~A~ecL~~i~s~~~~~~~~~ 285 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNE----QELQLGAAECLLIAVSRKGKLEDRK 285 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGC----TTTHHHHHHHHHHHHTCCSCHHHHG
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCC----HHHHHHHHHHHHHHHhCCCChhhHH
Confidence 1234566677777766543221 2222322 55556655443 356789999999887643 2222
Q ss_pred hhhhc--cCcHHHHHHHHh--------cCCHHHHHHHHHHHHHHhccCchhhHHHHHH----------cCChHHHHHHhh
Q 015988 243 VLTSE--EGGVLAVVEVLE--------NGSLQAREHAVGALLMMCQSDRCKYREPILR----------EGVIPGLLELTI 302 (397)
Q Consensus 243 ~~~~~--~g~i~~Lv~lL~--------~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~----------~g~v~~L~~ll~ 302 (397)
.++.- ...+..++..+. ..+.+..+..+.++..++.. ....+.+ .+.++.++.+..
T Consensus 286 ~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~----l~~l~~~~~~~~~~~~l~~~l~~lL~~t~ 361 (1204)
T 3a6p_A 286 PLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ----LCALLGADSDVETPSNFGKYLESFLAFTT 361 (1204)
T ss_dssp GGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSSCCCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH----HHHHHhccccccChhHHHHHHHHHHHHHh
Confidence 22211 112345555542 11245667777777777632 1111111 134666677776
Q ss_pred cCCHHHHHHHHHHHHHhhcC
Q 015988 303 QGTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 303 ~~~~~~~~~A~~~L~~l~~~ 322 (397)
+.+..+-..+...-..+.++
T Consensus 362 ~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 362 HPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp SSCHHHHHHHHHHHHHHHSC
T ss_pred CccHHhHHHHHHHHHHHHhc
Confidence 77666666666544434443
No 140
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=65.82 E-value=1.4e+02 Score=31.72 Aligned_cols=103 Identities=7% Similarity=0.060 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHHhhh-ChH-HHHHHHHhHHHHHHhhcCCC----h--hHHHHHHHHHHhhhcChhhHHHHHHcCChH
Q 015988 55 DPDLKLEAAREIRRLTKT-SQR-CRRQLAQAVQPLVLMLRAPD----S--DHESALLALLNLAVKDEKNKIKIVEAGALE 126 (397)
Q Consensus 55 ~~~~~~~a~~~L~~l~~~-~~~-~~~~l~~~v~~Lv~lL~~~~----~--~~~~a~~~L~~L~~~~~~~~~~i~~~g~i~ 126 (397)
++.....++++++.++.. .++ -+..+.+.++.|+.+...+. . +....++.++..++--..+...+ .-.+.
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl~ 569 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVVN 569 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHHH
Confidence 588899999999999753 222 34555566888888875421 1 12223355655544211122222 23466
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhh
Q 015988 127 PIISFLQSPDLNLQEYAAAALLTLSASSVNKPFIS 161 (397)
Q Consensus 127 ~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 161 (397)
.|++.+...++.++..|+.++..++. +++..++
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~--~C~~~lv 602 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQ--KCRRHFV 602 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHH--HTGGGGT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 77788888889999999999999986 4444443
No 141
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=63.92 E-value=14 Score=29.55 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=54.9
Q ss_pred cHHHHHHHHh-cCCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHH-HHHHhhc---CCHHHHHHHHHHHHHhhc
Q 015988 250 GVLAVVEVLE-NGSLQAREHAVGALLMMCQSDRCKYREPILREGVIPG-LLELTIQ---GTPKSQTKARTLLQLLRD 321 (397)
Q Consensus 250 ~i~~Lv~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~-L~~ll~~---~~~~~~~~A~~~L~~l~~ 321 (397)
++..|..-|. ++++.++..|+.+|..+..+.+......+.+...+.. |++++.. ....+++++..++..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4567777776 4789999999999999988765567777777778887 7888743 235899999888876543
No 142
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=61.41 E-value=33 Score=29.78 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHHHhhcCCch-hHHHHHhCCChHHHHHHhhhc------ccChHHHHHHHHHHHHhcCCcccchhhhhc
Q 015988 175 YGSQQAKFDAVMALSNLSTHPD-NLSIILGTNPIPSIVDLLIFC------KKSSKTAEKCTSLIESLVGFDEGRIVLTSE 247 (397)
Q Consensus 175 ~~~~~~~~~a~~aL~nLs~~~~-~~~~i~~~g~i~~Lv~ll~~~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 247 (397)
+.++..+.-+++++.|+-.++. .++.+........+++.+.+. .++..++..+..++.|++...-.... +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4567788899999999998877 566555432233444443221 12345667778888898653221110 1
Q ss_pred cCcHHHHHHHHhc---------CCHHHHHHHHHHHHHHhccC
Q 015988 248 EGGVLAVVEVLEN---------GSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 248 ~g~i~~Lv~lL~~---------~~~~v~~~a~~~L~~L~~~~ 280 (397)
......+++.+.. .+++....++-+|.++...+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 2344556666552 36788899999999998754
No 143
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=59.82 E-value=87 Score=27.15 Aligned_cols=142 Identities=7% Similarity=0.025 Sum_probs=87.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHHH
Q 015988 42 SAVHRALHLIQSDDPDLKLEAAREIRRLTKTS-QRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIKI 119 (397)
Q Consensus 42 ~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~i 119 (397)
+-+-.++...+..+.+.+...+.....++-++ +. .+.+.++.++++..+++. ++...+..+...+...++.-..
T Consensus 15 ~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~---ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~- 90 (257)
T 3gs3_A 15 AKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE---LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH- 90 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG---GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh---HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33333444334434468888888888877653 32 344446777776655444 6888888888888765543333
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHH--------hcCCCCch--hhhh---cCCHHHHHHHHhcCCHHHHHHHHH
Q 015988 120 VEAGALEPIISFLQSPDLNLQEYAAAALLTL--------SASSVNKP--FISA---SGAIPLLVEILRYGSQQAKFDAVM 186 (397)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nL--------s~~~~~~~--~i~~---~g~i~~L~~lL~~~~~~~~~~a~~ 186 (397)
.++.|..+++.+++.+...+..+..++ +.+..... .-.+ ...=..++.++.+++..++..++.
T Consensus 91 ----~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iK 166 (257)
T 3gs3_A 91 ----VINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIK 166 (257)
T ss_dssp ----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHH
Confidence 467788889888888877776655553 22222110 0001 122334555667789999999998
Q ss_pred HHHhh
Q 015988 187 ALSNL 191 (397)
Q Consensus 187 aL~nL 191 (397)
.+..+
T Consensus 167 F~e~v 171 (257)
T 3gs3_A 167 FLEGV 171 (257)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 144
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=58.30 E-value=88 Score=26.77 Aligned_cols=139 Identities=12% Similarity=0.057 Sum_probs=84.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHH-HHhcCCHHHHHHHHHHHHhhcC--CchhHHHHHhC
Q 015988 128 IISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVE-ILRYGSQQAKFDAVMALSNLST--HPDNLSIILGT 204 (397)
Q Consensus 128 L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~a~~aL~nLs~--~~~~~~~i~~~ 204 (397)
...+.+++..++|..|+.+|..+ . . ....++.+.. +-.+.+..+++.++.++..++. +++
T Consensus 76 a~~L~~~~~deVR~~Av~lLg~~-~--~------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-------- 138 (240)
T 3l9t_A 76 AFLAYQSDVYQVRMYAVFLFGYL-S--K------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-------- 138 (240)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHT-T--T------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-c--C------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------
Confidence 33455667778898888877766 2 1 1224555554 4456789999999999988874 333
Q ss_pred CChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccchhhhhccC-cHHHHHHHHhcCCHHHHHHHHHHHHHHhccCchh
Q 015988 205 NPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIVLTSEEG-GVLAVVEVLENGSLQAREHAVGALLMMCQSDRCK 283 (397)
Q Consensus 205 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~~g-~i~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~ 283 (397)
..++.+.....++ +..++..|...+.--+..+ ....+.. +++.|-.+..+++.-|+....+.|..++..+++.
T Consensus 139 ~~l~~~~~W~~d~--n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 KALPIIDEWLKSS--NLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp TTHHHHHHHHHCS--SHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCC--CHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 2566677777664 4567677666654222211 1110111 2333333444567889999999999999988544
Q ss_pred hHHHHH
Q 015988 284 YREPIL 289 (397)
Q Consensus 284 ~r~~i~ 289 (397)
.+..+.
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 145
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=57.77 E-value=12 Score=29.20 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=52.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 015988 124 ALEPIISFLQSPDLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLST 193 (397)
Q Consensus 124 ~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~ 193 (397)
++..+.+-|.+.++.++..|+.+|-.+..+.. ....+....++..|..++...++.++...+..+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 35566677778888888888887777766543 34456667788888888887889999999988887764
No 146
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=52.84 E-value=1.4e+02 Score=28.56 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhh
Q 015988 136 DLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLI 215 (397)
Q Consensus 136 ~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~ 215 (397)
|++.....+..+...+.. ..+.+-=-++.++.-|.++++.+...||..|. ...-+..+...+++..|++++.
T Consensus 92 D~~~Li~Ll~~il~~~~F----d~VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyF 163 (500)
T 3vld_A 92 NYDYLLDVVDKLVPMADF----DDVLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILF 163 (500)
T ss_dssp CHHHHHHHHHHHHHHSCH----HHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCH----HHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHc
Confidence 455544455555554432 23344446788889999999999999999888 4445677778899999999998
Q ss_pred hcccChH-HHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015988 216 FCKKSSK-TAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENGSLQAREHAVGALLMM 276 (397)
Q Consensus 216 ~~~~~~~-~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 276 (397)
..+.... ++...=.++..|+.+.-.++.+. + ...+.|..+=...++.+....+..+.-+
T Consensus 164 d~~t~i~~vvn~IE~~~~~LssdeLirrril-~-nnl~lL~~vK~~~~~i~~sRLLdll~il 223 (500)
T 3vld_A 164 DEKVENDKLITAIEKALERLSTDELIRRRLF-D-NNLPYLVSVKGRMETVSFVRLIDFLTIE 223 (500)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTSHHHHHHHH-T-TTHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCchHHHHHHHH-H-HhHHHHHHHhcCCCceeHHHHHHHHHHH
Confidence 7533333 66666666777765554555555 3 2344444433344555444444444444
No 147
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.38 E-value=18 Score=29.08 Aligned_cols=69 Identities=9% Similarity=-0.032 Sum_probs=50.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcC
Q 015988 125 LEPIISFLQSPDLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEILRY-GSQQAKFDAVMALSNLST 193 (397)
Q Consensus 125 i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL~~-~~~~~~~~a~~aL~nLs~ 193 (397)
+..|.+-|.+.++.++..|+.+|-.+..+.. ....+....++..|+.++.. .++.++..++..|...+.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4455666777788888888887777776542 44566667788888888865 568899888888877664
No 148
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=51.50 E-value=1.5e+02 Score=27.39 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhcCCCh-hHHHHHHHHHHhhhcChhhHHH
Q 015988 40 ASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLRAPDS-DHESALLALLNLAVKDEKNKIK 118 (397)
Q Consensus 40 ~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~~~~~-~~~~a~~~L~~L~~~~~~~~~~ 118 (397)
=..+++.++++-...+.++|...+.+|...+....+. +...++.|..+|++.+. +...++.+..++-. ..-..
T Consensus 61 l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el---~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp---l~f~~ 134 (386)
T 3o2t_A 61 LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL---LLKLIANLNMLLRDENVNVVKKAILTMTQLYK---VALQW 134 (386)
T ss_dssp GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence 3577888888887888999999999998888754333 33347778888877443 45555544444321 11122
Q ss_pred HHHcCC---------------hHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015988 119 IVEAGA---------------LEPIISFLQSPDLNLQEYAAAALLTL 150 (397)
Q Consensus 119 i~~~g~---------------i~~L~~lL~~~~~~~~~~a~~~L~nL 150 (397)
++..+. -..++.++.+++..++..++.++-.+
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 222221 12344455666777777777666554
No 149
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=50.84 E-value=20 Score=28.38 Aligned_cols=70 Identities=17% Similarity=0.035 Sum_probs=54.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCC--CchhhhhcCCHHHHHHHHhc------CCHHHHHHHHHHHHhhcC
Q 015988 124 ALEPIISFLQSPDLNLQEYAAAALLTLSASSV--NKPFISASGAIPLLVEILRY------GSQQAKFDAVMALSNLST 193 (397)
Q Consensus 124 ~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~L~~lL~~------~~~~~~~~a~~aL~nLs~ 193 (397)
++..|.+-|.+.++.++..|+.+|-.+..+.. ....+....++..|++++.. .+..++...+..|...+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 45567777888899999999988888876553 45667777889999999853 568899999998888765
No 150
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=47.74 E-value=19 Score=28.47 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=54.6
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--hhHHHHHhCCChHHHHHHhhhc----ccChHHHHHHHHHHHHhc
Q 015988 164 GAIPLLVEILRYGSQQAKFDAVMALSNLSTHP--DNLSIILGTNPIPSIVDLLIFC----KKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 164 g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~nL~ 235 (397)
.++..|.+-|.++++.++..|+..|-.+..+. .....+.....+..|++++... ..+..+...++.++..-+
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35667777788899999999999999988763 4556777777888899988742 234678888888887654
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=47.54 E-value=27 Score=29.69 Aligned_cols=91 Identities=10% Similarity=0.037 Sum_probs=63.1
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--hhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhcCCcccc
Q 015988 164 GAIPLLVEILRYGSQQAKFDAVMALSNLSTHP--DNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGR 241 (397)
Q Consensus 164 g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~~~~~~~ 241 (397)
.++..|.+-|.+.++.++..|+..|..+..+. .....+.....++.|.+++... .+..+...++.+|...+..-.+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ-VEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhCCC
Confidence 35677778888999999999999999988763 3456666667788888888654 45678888888888765432222
Q ss_pred hhhhhccCcHHHHHHHHh
Q 015988 242 IVLTSEEGGVLAVVEVLE 259 (397)
Q Consensus 242 ~~~~~~~g~i~~Lv~lL~ 259 (397)
. +...+..+...|+
T Consensus 124 ~----~l~~i~~~Y~~Lk 137 (226)
T 3zyq_A 124 P----KYKVVQDTYQIMK 137 (226)
T ss_dssp G----GGHHHHHHHHHHH
T ss_pred c----chHHHHHHHHHHH
Confidence 1 1224555555554
No 152
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=47.31 E-value=22 Score=28.82 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=54.7
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--hhHHHHHhCCChHHHHHHhhhc----ccChHHHHHHHHHHHHhc
Q 015988 164 GAIPLLVEILRYGSQQAKFDAVMALSNLSTHP--DNLSIILGTNPIPSIVDLLIFC----KKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 164 g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~nL~ 235 (397)
.++..|.+-+.++++.++..|+..|-.+..+. .....+.....++.|++++... ..+..+...++.+|..-+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35667777888899999999999999988863 3456677777888999998631 234678888888887654
No 153
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=46.04 E-value=1.8e+02 Score=27.16 Aligned_cols=104 Identities=13% Similarity=-0.002 Sum_probs=64.9
Q ss_pred hcCCHHHHHHHHHHHHhhcCCchhHHHHHh-CCChHHHHHHhhhc------ccChHHHHHHHHHHHHhcCCcccchhhhh
Q 015988 174 RYGSQQAKFDAVMALSNLSTHPDNLSIILG-TNPIPSIVDLLIFC------KKSSKTAEKCTSLIESLVGFDEGRIVLTS 246 (397)
Q Consensus 174 ~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~ll~~~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 246 (397)
.+..+..+.-++++++||-..+.....+.. ......+++.+... ..+..++..+..++.|++...-....
T Consensus 272 ~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~--- 348 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 348 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---
T ss_pred CCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 345678888899999999888774333333 22344555555321 11245667777888898664221110
Q ss_pred ccCcHHHHHHHHh---------cCCHHHHHHHHHHHHHHhccC
Q 015988 247 EEGGVLAVVEVLE---------NGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 247 ~~g~i~~Lv~lL~---------~~~~~v~~~a~~~L~~L~~~~ 280 (397)
+......+++.+. ..+.+....++-+|.+|....
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1234456666665 257889999999999998754
No 154
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=43.00 E-value=2e+02 Score=26.48 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=45.1
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015988 122 AGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSN 190 (397)
Q Consensus 122 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~aL~n 190 (397)
.++++.++.+-...+.+++...+.+|...+..+ ..+ -..+++.|..+|+++++.+.+.++.+..+
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~el-~~~~l~~L~~LL~d~d~~V~K~~I~~~ts 126 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IEL-LLKLIANLNMLLRDENVNVVKKAILTMTQ 126 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456777888887888888888888887766421 111 24456677777777788887777766555
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.73 E-value=33 Score=28.99 Aligned_cols=71 Identities=7% Similarity=0.094 Sum_probs=53.8
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhcCCc--hhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHhc
Q 015988 164 GAIPLLVEILRYGSQQAKFDAVMALSNLSTHP--DNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLV 235 (397)
Q Consensus 164 g~i~~L~~lL~~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL~ 235 (397)
.++..|.+-|.+.++.++..|+..|..+..+. .....+.....++.|+.++.+. .+..+...++.++..-+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST-PHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHH
Confidence 35666777788899999999999999988763 3446666667888888888764 45678888888777654
No 156
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=35.19 E-value=1.6e+02 Score=22.98 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=56.0
Q ss_pred CCCCchhhhhcCCHHHHHHHHhc------CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHH
Q 015988 153 SSVNKPFISASGAIPLLVEILRY------GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEK 226 (397)
Q Consensus 153 ~~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 226 (397)
....+..+.+.|++..+-.-|.- ++..++...+.+|.+|-. .+..+.+.|+-..++.+-++..+...+...
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI---~~e~Lk~SglGkvv~~l~k~~~et~~nk~l 126 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI---HKEHLVTSGVGKIVYFYSINPKESKEVRAS 126 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC---CHHHHHHHCHHHHHHHHHHCTTSCHHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC---CHHHhhcCCCCcchhhhhcCCccCHHHHHH
Confidence 34556778889999988887753 468999999999999853 366677777666666666666666666666
Q ss_pred HHHHHHH
Q 015988 227 CTSLIES 233 (397)
Q Consensus 227 a~~~L~n 233 (397)
|-.++..
T Consensus 127 a~~Li~~ 133 (145)
T 2xpp_A 127 AKALVQK 133 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 157
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=34.34 E-value=1.5e+02 Score=31.28 Aligned_cols=222 Identities=14% Similarity=0.089 Sum_probs=111.7
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHhHHHHHHhhc----C-CChhHHHHHHHHHH-----
Q 015988 38 SSASSAVHRALHLIQSDDPDLKLEAAREIRRLTKTSQRCRRQLAQAVQPLVLMLR----A-PDSDHESALLALLN----- 107 (397)
Q Consensus 38 ~~~~~~l~~lv~lL~s~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~v~~Lv~lL~----~-~~~~~~~a~~~L~~----- 107 (397)
..+...+..|+++--+.-.++|..|-.+|......-+..+..+. |.+++.|+ . ++.-...|+..|..
T Consensus 129 ~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~ii---p~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~ 205 (997)
T 1vsy_5 129 KLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVI---NKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHR 205 (997)
T ss_dssp SHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHH---HHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHH
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHH---HHHHHHHhccccCCCHHHHHHHHHHHhhhhhhh
Confidence 35667788888887788889999999999998876555665554 44444443 3 22213334443331
Q ss_pred hhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCC--CCchhhhhcCCHHHHHHHHhcCCHHHHHHHH
Q 015988 108 LAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASS--VNKPFISASGAIPLLVEILRYGSQQAKFDAV 185 (397)
Q Consensus 108 L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~ 185 (397)
....+-.+. ...++.|++....+.+.++..+-.+...+...- +....+.+...+. -+..++..+ ..+.
T Consensus 206 ~~~~d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~----~i~~~d~~i-~~~~ 275 (997)
T 1vsy_5 206 KLMTDYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFL----PLAPPDGTI-NLQV 275 (997)
T ss_dssp HGGGCHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTG----GGCCSCSST-TSHH
T ss_pred HHhcChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHh----ccCCCcHHH-HHHH
Confidence 111111111 224566666666666666555444433433211 1111111111111 111111111 0111
Q ss_pred HHHHhhcCCchhHHHHHh--CCChHHHHHHhhhcccC--hHHHHHHHHHHHHhcCCcccchhhhhccCcHHHHHHHHhcC
Q 015988 186 MALSNLSTHPDNLSIILG--TNPIPSIVDLLIFCKKS--SKTAEKCTSLIESLVGFDEGRIVLTSEEGGVLAVVEVLENG 261 (397)
Q Consensus 186 ~aL~nLs~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~--~~~~~~a~~~L~nL~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 261 (397)
..... ....+++...+ .+....|+++.+. ..+ -+....++..|.+|....+... ...++..+++.+.++
T Consensus 276 ~~~~~--~~~~~r~~~~~~~~~L~~~l~~~~~~-~~h~~Wk~~~~~~~~l~~l~~r~d~~~----~~~~v~~~~~~l~~d 348 (997)
T 1vsy_5 276 EAVKL--AKKKKREYYLSLLVDLQDKLLDKLDN-EKDMGWKIRMFILRFVTQIQSNLESKP----DKRAVFSIISQISTK 348 (997)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHHHHHHHHHHS-STTCCSCHHHHHHHHHHHHTCCSSCCC----CHHHHHHHHGGGGGC
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHhhcCC
Confidence 11110 00111222211 2344455566633 233 4556677777666654443221 334667788888889
Q ss_pred CHHHHHHHHHHHHHHhcc
Q 015988 262 SLQAREHAVGALLMMCQS 279 (397)
Q Consensus 262 ~~~v~~~a~~~L~~L~~~ 279 (397)
+|.++..|..++..+...
T Consensus 349 hp~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 349 HPEIIHLVVKSLLSTCNK 366 (997)
T ss_dssp CHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999888766543
No 158
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=33.60 E-value=2.2e+02 Score=25.95 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=63.1
Q ss_pred hcCCHHHHHHHHHHHHhhcCCchh-HHHHHhCCChHHHHHHhhhc------ccChHHHHHHHHHHHHhcCCcccchhhhh
Q 015988 174 RYGSQQAKFDAVMALSNLSTHPDN-LSIILGTNPIPSIVDLLIFC------KKSSKTAEKCTSLIESLVGFDEGRIVLTS 246 (397)
Q Consensus 174 ~~~~~~~~~~a~~aL~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~ 246 (397)
.+..+..+.-++++++|+-.++.. +..+........+++.+... ..+..++..+..++.|++...-....
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~--- 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---
Confidence 345678888899999999888774 33333211123344433211 11245667777888898664221100
Q ss_pred ccCcHHHHHHHHh---------cCCHHHHHHHHHHHHHHhccC
Q 015988 247 EEGGVLAVVEVLE---------NGSLQAREHAVGALLMMCQSD 280 (397)
Q Consensus 247 ~~g~i~~Lv~lL~---------~~~~~v~~~a~~~L~~L~~~~ 280 (397)
+......+++.+. ..+++....++-+|.+|...+
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1234456666665 357889999999999998754
No 159
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=26.78 E-value=71 Score=25.29 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=51.7
Q ss_pred CCHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCc--hhHHHHHhCCChHH-HHHHhhh-cccChHHHHHHHHHHHHhcC
Q 015988 164 GAIPLLVEILR-YGSQQAKFDAVMALSNLSTHP--DNLSIILGTNPIPS-IVDLLIF-CKKSSKTAEKCTSLIESLVG 236 (397)
Q Consensus 164 g~i~~L~~lL~-~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~-Lv~ll~~-~~~~~~~~~~a~~~L~nL~~ 236 (397)
.++..|.+-|+ ++++.++..|+..|-.+..+. .....+.....++. |++++.. ..+...+.+.++.+|..-+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 35666777776 478999999999998888763 34566666777887 7888853 22345778888888776543
No 160
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=26.41 E-value=1.4e+02 Score=24.73 Aligned_cols=111 Identities=7% Similarity=-0.016 Sum_probs=60.0
Q ss_pred ChHHHHHhhCC------CCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhc---CCHHHHHHHHHHHHhhcCC
Q 015988 124 ALEPIISFLQS------PDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRY---GSQQAKFDAVMALSNLSTH 194 (397)
Q Consensus 124 ~i~~L~~lL~~------~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~---~~~~~~~~a~~aL~nLs~~ 194 (397)
.+|.++.++.+ .+.........+...|..+....-..--...+|.++..+-. +...+|+.|+..|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 34555554432 35566666777777777665532222223456666665532 2348999999999998864
Q ss_pred chhHHHHHhCCChHHHHHHhhhcccChHHHHHHHHHHHHh
Q 015988 195 PDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESL 234 (397)
Q Consensus 195 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~nL 234 (397)
..+.-.-....++..+.+.+.++........-|+..|..|
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 2221111122344556665555433344445555555544
No 161
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=24.11 E-value=1.3e+02 Score=28.25 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhhhcChhh-HHHHHHcCChHHHHHhhCC--------CCHHHHHHHHHHHHHHhcCCC-CchhhhhcCCH
Q 015988 97 DHESALLALLNLAVKDEKN-KIKIVEAGALEPIISFLQS--------PDLNLQEYAAAALLTLSASSV-NKPFISASGAI 166 (397)
Q Consensus 97 ~~~~a~~~L~~L~~~~~~~-~~~i~~~g~i~~L~~lL~~--------~~~~~~~~a~~~L~nLs~~~~-~~~~i~~~g~i 166 (397)
.+..+++++.|+.. ++.. +..+........+++.+.. .+..++..++.++.|++..-. .+. +...+
T Consensus 278 n~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~ 353 (425)
T 3pst_A 278 LTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELL 353 (425)
T ss_dssp HHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHH
T ss_pred HHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHH
Confidence 57788999999988 5553 4444332334566665532 145688888899999985211 111 12344
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHHhhcCCc
Q 015988 167 PLLVEILR---------YGSQQAKFDAVMALSNLSTHP 195 (397)
Q Consensus 167 ~~L~~lL~---------~~~~~~~~~a~~aL~nLs~~~ 195 (397)
..+..++. ..+.|..+.++.+|.+|....
T Consensus 354 ~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 354 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 55666665 358899999999999998643
No 162
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=23.03 E-value=69 Score=25.28 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=50.1
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCchhhHHHHHHcCChHH-HHHHhhc---CCHHHHHHHHHHHHHhhcC
Q 015988 250 GVLAVVEVLEN-GSLQAREHAVGALLMMCQSDRCKYREPILREGVIPG-LLELTIQ---GTPKSQTKARTLLQLLRDS 322 (397)
Q Consensus 250 ~i~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~r~~i~~~g~v~~-L~~ll~~---~~~~~~~~A~~~L~~l~~~ 322 (397)
++..|..-|.. .++.++..|+.+|..+..+.+......|.+...+.- |++++.. ....|+++...++..-+..
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 45566666664 578888889999988887765555666655445543 5666643 2347999999999888764
No 163
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=21.26 E-value=5.4e+02 Score=24.52 Aligned_cols=106 Identities=21% Similarity=0.151 Sum_probs=71.0
Q ss_pred HHHHHHHhhhcChhhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHHhcCCCCchhhhhcCCHHHHHHHHhcCCHH-
Q 015988 101 ALLALLNLAVKDEKNKIKIVEAGALEPIISFLQSPDLNLQEYAAAALLTLSASSVNKPFISASGAIPLLVEILRYGSQQ- 179 (397)
Q Consensus 101 a~~~L~~L~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L~~lL~~~~~~- 179 (397)
.+..+..+... -.-..+.+.=.++-++.-|.++++.+...++.++. .+..+..+...+.+..|+.++...+.+
T Consensus 96 Li~Ll~~il~~--~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i 169 (500)
T 3vld_A 96 LLDVVDKLVPM--ADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVEN 169 (500)
T ss_dssp HHHHHHHHHHH--SCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCC
T ss_pred HHHHHHHHHhc--CCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCc
Confidence 44444444431 23456777777888999999999999888888887 556788888999999999999775432
Q ss_pred --HHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHH
Q 015988 180 --AKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDL 213 (397)
Q Consensus 180 --~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~l 213 (397)
+....=.++..|+.+.=.+..+.+. ..+.+.++
T Consensus 170 ~~vvn~IE~~~~~LssdeLirrril~n-nl~lL~~v 204 (500)
T 3vld_A 170 DKLITAIEKALERLSTDELIRRRLFDN-NLPYLVSV 204 (500)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHTT-THHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHH-hHHHHHHH
Confidence 4444444666776555456666653 34444443
No 164
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=20.18 E-value=3.4e+02 Score=21.75 Aligned_cols=79 Identities=11% Similarity=-0.025 Sum_probs=56.9
Q ss_pred CCchhhhhcCCHHHHHHHHhc------CCHHHHHHHHHHHHhhcCCchhHHHHHhCCChHHHHHHhhhcccChHHHHHHH
Q 015988 155 VNKPFISASGAIPLLVEILRY------GSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCT 228 (397)
Q Consensus 155 ~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~ 228 (397)
..+..+.+.|++..+-.-|.- ++..++...+.+|.+|-. .+..+.++|+-..++-+-++..+...+...|-
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI---~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~ 143 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV---KTEHLKESGLGRVVIFYTKSKRVEAQLARLAE 143 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC---CHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC---CHHHHhhCCCCceeeehhcCCcccHHHHHHHH
Confidence 456677788888888877753 468999999999999853 35567777766666666666656667777777
Q ss_pred HHHHHhcC
Q 015988 229 SLIESLVG 236 (397)
Q Consensus 229 ~~L~nL~~ 236 (397)
.++..-+.
T Consensus 144 ~Li~~WsR 151 (170)
T 3nfq_A 144 KLIAEWTR 151 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 77776544
Done!