BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015990
(397 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225453766|ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis
vinifera]
gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera]
Length = 335
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/278 (78%), Positives = 246/278 (88%), Gaps = 4/278 (1%)
Query: 90 CIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149
CI CARSQDD YHAT+ ALNSKGR PRKSLGQHYMLNS IN+QLA A +++GD++LEIG
Sbjct: 39 CITCARSQDD-YHATLDALNSKGRTPRKSLGQHYMLNSSINEQLADTADIRDGDVILEIG 97
Query: 150 PGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209
PGTGSLTNVLL+AGATVLAIEKD HM LVRERFA D+LKVLQEDF+KCHI H+ SL
Sbjct: 98 PGTGSLTNVLLDAGATVLAIEKDAHMAALVRERFAVTDRLKVLQEDFMKCHIHPHLFSLL 157
Query: 210 ERRKS---SSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT 266
E +K+ S +AKVV+NIPFNISTDV+K LLPMGDIFSEVVLLLQ+ETALRLVE SLRT
Sbjct: 158 ESKKAKNKESRYAKVVSNIPFNISTDVVKILLPMGDIFSEVVLLLQDETALRLVEASLRT 217
Query: 267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSM 326
EYRPINIFVNFYS+PEYKFKVPRTNFFPQP VDAAVV FKLKQA DYP V+S KSFFS+
Sbjct: 218 QEYRPINIFVNFYSDPEYKFKVPRTNFFPQPNVDAAVVVFKLKQAVDYPPVSSIKSFFSL 277
Query: 327 VSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATA 364
V+SAFNGKRKMLR+SLQH+CTS+EIE+AL +VGLPAT+
Sbjct: 278 VNSAFNGKRKMLRRSLQHICTSIEIEEALRNVGLPATS 315
>gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp.
lyrata]
gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp.
lyrata]
Length = 342
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/277 (77%), Positives = 243/277 (87%), Gaps = 3/277 (1%)
Query: 91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
+ C +S DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 46 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 105
Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
GTGSLTNVL+N GATVLAIEKD HMV LV ERFA D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 106 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 165
Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
R+ S S AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 166 SRRLSHPDSSLAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 225
Query: 268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
EYRPINI +NFYSEPEY F+VPR NFFPQPKVDAAVVTFKLK +DYP V+STK+FFS+V
Sbjct: 226 EYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPSDYPDVSSTKNFFSLV 285
Query: 328 SSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATA 364
+SAFNGKRKMLRKSLQH+ +S EIEKALG GLP T+
Sbjct: 286 NSAFNGKRKMLRKSLQHISSSPEIEKALGVAGLPVTS 322
>gi|15220982|ref|NP_171690.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana]
gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
Length = 343
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/277 (77%), Positives = 243/277 (87%), Gaps = 3/277 (1%)
Query: 91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
+ C +S DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106
Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
GTGSLTNVL+N GATVLAIEKD HMV LV ERFA D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166
Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
R+ S S AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226
Query: 268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
EYRPINI +NFYSEPEY F+VPR NFFPQPKVDAAVVTFKLK DYP V+STK+FFS+V
Sbjct: 227 EYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPRDYPDVSSTKNFFSLV 286
Query: 328 SSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATA 364
+SAFNGKRKMLRKSLQH+ +S +IEKALG GLPAT+
Sbjct: 287 NSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATS 323
>gi|449432199|ref|XP_004133887.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
[Cucumis sativus]
Length = 347
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/269 (79%), Positives = 241/269 (89%), Gaps = 3/269 (1%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
DDYH+TI+ALNSKGR PRKSLGQHYMLNS IN+QLAAAA V+EGD+VLEIGPGTGSLTNV
Sbjct: 59 DDYHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNV 118
Query: 159 LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF---ERRKSS 215
L+N+GATVLA+EKD +M GLV ERFA+ ++LKVL EDFVKC++ SHM+SL E ++
Sbjct: 119 LINSGATVLAVEKDSYMAGLVDERFANTNRLKVLNEDFVKCNVSSHMMSLLKSIELSEAR 178
Query: 216 SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIF 275
S AKVV+NIPFNISTD+IKQLLPMGDIFSEVVLLLQEE ALRLVE SLRTSEYRPIN+F
Sbjct: 179 SQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEEAALRLVETSLRTSEYRPINVF 238
Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKR 335
VNFYS+PE KFKVPRTNFFPQP VDAAVV+FKLK+A DYPAV+STKSFFSMV+SAFNGKR
Sbjct: 239 VNFYSDPELKFKVPRTNFFPQPNVDAAVVSFKLKRAADYPAVSSTKSFFSMVNSAFNGKR 298
Query: 336 KMLRKSLQHLCTSLEIEKALGDVGLPATA 364
KMLRKSLQH+CTSLEIEKAL D L T+
Sbjct: 299 KMLRKSLQHICTSLEIEKALEDSSLLPTS 327
>gi|356568329|ref|XP_003552364.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
[Glycine max]
Length = 341
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/305 (72%), Positives = 251/305 (82%), Gaps = 9/305 (2%)
Query: 67 LLPKPTRPAHSSIAGVQKGAASACIVCARSQD-------DDYHATIKALNSKGRFPRKSL 119
LL + +PAH S AGV++ + +VCA DDYHAT+KALNSKGRFPRKSL
Sbjct: 19 LLNRHHKPAHDSTAGVRR--RTPYVVCAEKGSRASTRSADDYHATLKALNSKGRFPRKSL 76
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
GQHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+GA VLA+EKD+HM LV
Sbjct: 77 GQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALV 136
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
ERF+S +LKVL ED VKCH+RSHM SL S AKVVANIPFNISTDVIK LLP
Sbjct: 137 SERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLP 196
Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
MGDIFSEVVLLLQEETA+RLV SLRT EYRPIN+FVNFYS+PEYK +VPRTNFFPQP V
Sbjct: 197 MGDIFSEVVLLLQEETAVRLVVSSLRTPEYRPINVFVNFYSDPEYKLEVPRTNFFPQPNV 256
Query: 300 DAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVG 359
DAAVV+FKLK ++YP V+STKSFFSMV+SAFN KRKMLRKSLQH+CTSLEIE+AL +G
Sbjct: 257 DAAVVSFKLKLPSEYPQVSSTKSFFSMVNSAFNEKRKMLRKSLQHICTSLEIEEALTSIG 316
Query: 360 LPATA 364
L AT+
Sbjct: 317 LLATS 321
>gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis]
gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis]
Length = 338
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/299 (72%), Positives = 247/299 (82%), Gaps = 6/299 (2%)
Query: 70 KPTRPAHSSIAGVQKGAASACIVC-ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSE 128
KP+ P+ + I +K I C + DDY AT+KALNS+GR PRKSLGQHYMLNSE
Sbjct: 22 KPSVPSRNGITSARKK--RVLIRCDTKRSSDDYRATLKALNSRGRRPRKSLGQHYMLNSE 79
Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
+N+QL AA V+EGD+VLEIGPGTGSLTN+LL+ GATVLAIEKD HM +VRERF+ D+
Sbjct: 80 VNEQLVCAANVEEGDLVLEIGPGTGSLTNLLLDTGATVLAIEKDAHMAAIVRERFSHTDR 139
Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKS---SSGFAKVVANIPFNISTDVIKQLLPMGDIFS 245
K+LQEDFVKCHIR HMLSL E S AKVVANIPFNISTDV+KQLLPMGDI S
Sbjct: 140 FKLLQEDFVKCHIRFHMLSLLENMTSLNEKPRRAKVVANIPFNISTDVVKQLLPMGDIIS 199
Query: 246 EVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVT 305
EV LLLQEETA RLVE SLRTSEYRPIN+FVNFYS+P YKFKVPR+NFFPQP VDAAVVT
Sbjct: 200 EVALLLQEETASRLVESSLRTSEYRPINVFVNFYSDPVYKFKVPRSNFFPQPNVDAAVVT 259
Query: 306 FKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATA 364
FKLKQ DYPAV+S+KSFFS+V+SAFNGKRKMLR+SLQH+CTS EIE+AL +VGLPAT+
Sbjct: 260 FKLKQTADYPAVSSSKSFFSLVNSAFNGKRKMLRRSLQHICTSPEIEQALINVGLPATS 318
>gi|356532056|ref|XP_003534590.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
[Glycine max]
Length = 341
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/304 (71%), Positives = 249/304 (81%), Gaps = 7/304 (2%)
Query: 67 LLPKPTRPAHSSIAGVQK------GAASACIVCARSQDDDYHATIKALNSKGRFPRKSLG 120
LL + +PAH S AGV+ + + RS DD YHAT+KALNSKGRFPRKSLG
Sbjct: 19 LLNRHHKPAHDSTAGVRNRTPYVVSSERSSTASTRSADD-YHATLKALNSKGRFPRKSLG 77
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
QHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+GA VLA+EKD+HM LV
Sbjct: 78 QHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALVS 137
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
ERF+S +LKVL ED VKCH+RSHM SL S AKVVANIPFNISTDVIK LLPM
Sbjct: 138 ERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLPM 197
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
GDIFSEVVLLLQEETA+RLV SLRT EYRP+N+FVNFYS+PEYK KVPR+NFFPQP VD
Sbjct: 198 GDIFSEVVLLLQEETAVRLVVSSLRTPEYRPVNVFVNFYSDPEYKLKVPRSNFFPQPNVD 257
Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
AAVV+FKLK ++YP V+STKSFFSMV+SAFN KRKMLRKSLQH+CTSLEIE+AL +GL
Sbjct: 258 AAVVSFKLKLPSEYPQVSSTKSFFSMVNSAFNEKRKMLRKSLQHICTSLEIEEALTSIGL 317
Query: 361 PATA 364
AT+
Sbjct: 318 LATS 321
>gi|357507115|ref|XP_003623846.1| Ribosomal RNA small subunit methyltransferase A [Medicago
truncatula]
gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula]
gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula]
gi|355498861|gb|AES80064.1| Ribosomal RNA small subunit methyltransferase A [Medicago
truncatula]
Length = 349
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/284 (72%), Positives = 235/284 (82%), Gaps = 10/284 (3%)
Query: 91 IVCARSQD-------DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGD 143
+ C R + DDYHAT+KALNSKGR P+KSLGQ+YMLNS+IN+QL A V+EGD
Sbjct: 46 VACGRGNNRASTTNKDDYHATLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGD 105
Query: 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203
+VLEIGPGTGSLTN L+N+GA VLA+EKD+HM LV ERF+S +LKVL ED VKCH+RS
Sbjct: 106 VVLEIGPGTGSLTNTLINSGAFVLAVEKDKHMAALVSERFSSTGKLKVLNEDIVKCHVRS 165
Query: 204 HMLSLF---ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
H+ SL E S + AKVVANIPF ISTDVIK LLPMGDIFSEVVLLLQEETALR V
Sbjct: 166 HISSLVGSTEDIDSDTRKAKVVANIPFYISTDVIKLLLPMGDIFSEVVLLLQEETALRWV 225
Query: 261 EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST 320
EPSLRT EYRPINIFVNFYS+PEYKFKV RTNFFPQP VDAAVV+FKLKQ ++YP V+S
Sbjct: 226 EPSLRTPEYRPINIFVNFYSDPEYKFKVARTNFFPQPNVDAAVVSFKLKQPSEYPQVSSN 285
Query: 321 KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATA 364
KSFFSMV+SAFN KRKM+RKSLQH+CTSLEIE+AL +GL +T+
Sbjct: 286 KSFFSMVNSAFNEKRKMIRKSLQHICTSLEIEEALESIGLLSTS 329
>gi|300681318|emb|CAZ96033.1| dimethyladenosine transferase [Sorghum bicolor]
Length = 343
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/268 (66%), Positives = 225/268 (83%), Gaps = 2/268 (0%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT
Sbjct: 56 DDYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTA 115
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 116 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATK 175
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKVV+N+PFN+S++V+K LLPMGD+FS VVL+LQ+ETA+RL + S++ EYRPIN+FV
Sbjct: 176 KLAKVVSNLPFNVSSEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVFV 235
Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336
NFYS+PEYKF+V R NFFP+PKV+ AV++FKLK A +YP V+S KSFFSMV+SAF GKRK
Sbjct: 236 NFYSKPEYKFRVDRENFFPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRK 295
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPATA 364
MLRKSLQHLC+S EIE AL ++GLP TA
Sbjct: 296 MLRKSLQHLCSSSEIEAALDNIGLPVTA 323
>gi|294464127|gb|ADE77582.1| unknown [Picea sitchensis]
Length = 351
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/295 (64%), Positives = 222/295 (75%), Gaps = 8/295 (2%)
Query: 73 RPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQ 132
+P+ SS+ G +A CA +DDYH+T+K L S+GRFPRKSLGQHYMLNS IN+
Sbjct: 42 KPSMSSL-----GVPAASPRCALRAEDDYHSTLKVLQSRGRFPRKSLGQHYMLNSAINEL 96
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
+ A ++EGD+VLEIGPGTG+LTN L+NAGA V AIEKD HM LV ERF + ++KV+
Sbjct: 97 MVKEAQLKEGDVVLEIGPGTGALTNALVNAGAHVFAIEKDAHMAMLVSERFNNNGKVKVV 156
Query: 193 QEDFVKCHIRSHMLSLFERRKSSSGF---AKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
QEDF +CHI +LS S + AKVV+N+PFNI+TDV+K LLPMGD+FS VVL
Sbjct: 157 QEDFTRCHIEPQILSFSTSIAPGSNYGQMAKVVSNLPFNIATDVLKLLLPMGDMFSHVVL 216
Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 309
LLQ+E ALR+V S T EYR INIFVNFYS PEYKFKV RTNFFPQP VDAAVV FKLK
Sbjct: 217 LLQDEMALRVVGSSPGTPEYRQINIFVNFYSVPEYKFKVQRTNFFPQPNVDAAVVVFKLK 276
Query: 310 QATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATA 364
Q DYP V S K FFSMV+SAFNGKRKMLRKSLQHLC S +IE AL +GLP T+
Sbjct: 277 QVVDYPHVASPKGFFSMVNSAFNGKRKMLRKSLQHLCASRDIESALRTLGLPETS 331
>gi|413926673|gb|AFW66605.1| dimethyladenosine transferase [Zea mays]
Length = 338
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/268 (65%), Positives = 224/268 (83%), Gaps = 2/268 (0%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+Y LNS++N++L AAA V+EGD+VLEIGPGTGSLT+
Sbjct: 51 DDYHSTIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTS 110
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 111 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYGATK 170
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+RL + S+++ EYR IN+FV
Sbjct: 171 KLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEYRSINVFV 230
Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336
+FYSEPEYKF+V R NFFP+PKVD AV++FKLK A +YP V+S KSFFSMV+SAF GKRK
Sbjct: 231 DFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRK 290
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPATA 364
MLRKSLQH+C+S EIE AL ++GLP TA
Sbjct: 291 MLRKSLQHICSSSEIEAALDNIGLPVTA 318
>gi|413926672|gb|AFW66604.1| hypothetical protein ZEAMMB73_716849 [Zea mays]
Length = 366
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/267 (65%), Positives = 223/267 (83%), Gaps = 2/267 (0%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+Y LNS++N++L AAA V+EGD+VLEIGPGTGSLT+
Sbjct: 51 DDYHSTIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTS 110
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 111 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYGATK 170
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+RL + S+++ EYR IN+FV
Sbjct: 171 KLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEYRSINVFV 230
Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336
+FYSEPEYKF+V R NFFP+PKVD AV++FKLK A +YP V+S KSFFSMV+SAF GKRK
Sbjct: 231 DFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRK 290
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPAT 363
MLRKSLQH+C+S EIE AL ++GLP T
Sbjct: 291 MLRKSLQHICSSSEIEAALDNIGLPVT 317
>gi|226492680|ref|NP_001151385.1| LOC100285018 [Zea mays]
gi|195646350|gb|ACG42643.1| dimethyladenosine transferase [Zea mays]
Length = 337
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/268 (64%), Positives = 223/268 (83%), Gaps = 2/268 (0%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+Y LNS++N++L AAA V++GD+VLEIGPGTGSLT+
Sbjct: 50 DDYHSTIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEDGDVVLEIGPGTGSLTS 109
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 110 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYGATK 169
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+R + S+++ EYR IN+FV
Sbjct: 170 KLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRFADASIQSPEYRSINVFV 229
Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336
+FYSEPEYKF+V R NFFP+PKVD AV++FKLK A +YP V+S KSFFSMV+SAF GKRK
Sbjct: 230 DFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRK 289
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPATA 364
MLRKSLQH+C+S +IE AL ++GLP TA
Sbjct: 290 MLRKSLQHICSSSDIEAALDNIGLPVTA 317
>gi|357145475|ref|XP_003573655.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
[Brachypodium distachyon]
Length = 344
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/269 (66%), Positives = 224/269 (83%), Gaps = 3/269 (1%)
Query: 99 DDYHATIKALNSKGR--FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLT 156
DDYH+TI++LNS GR PRKSLGQ+YMLN+ +N++L AAA V+EGD+VLEIGPGTGSLT
Sbjct: 56 DDYHSTIRSLNSGGRRLVPRKSLGQNYMLNARVNEELVAAAGVEEGDVVLEIGPGTGSLT 115
Query: 157 NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS-S 215
LL AGATV+A+EKD+ M LV++RF S +QLK+++ED K H+ SH L + E + +
Sbjct: 116 AALLAAGATVVAVEKDKQMAALVKDRFGSTEQLKIIEEDITKFHVNSHFLPILEEKSHCT 175
Query: 216 SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIF 275
+AKVV+N+PFN+ST+V+KQ+LPMGD+FS +VL+LQ+ETALRL S++T EYRPIN+F
Sbjct: 176 KKYAKVVSNLPFNVSTEVVKQILPMGDVFSVMVLMLQDETALRLANASIQTPEYRPINVF 235
Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKR 335
VNFYSEPEYKFKV R NFFPQPKVD V++FKLK A +YP V S KSFFSMV+SAFNGKR
Sbjct: 236 VNFYSEPEYKFKVERANFFPQPKVDGGVISFKLKNAGEYPPVGSNKSFFSMVNSAFNGKR 295
Query: 336 KMLRKSLQHLCTSLEIEKALGDVGLPATA 364
KMLRKSLQHLC+S EIE AL ++GLPATA
Sbjct: 296 KMLRKSLQHLCSSAEIEAALSNIGLPATA 324
>gi|300681352|emb|CAZ96099.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570]
Length = 333
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 173/268 (64%), Positives = 217/268 (80%), Gaps = 12/268 (4%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT
Sbjct: 56 DDYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTA 115
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 116 ALLQAGATVFAVEKDKHMAALVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKCHATK 175
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKVV+N+PFN+ST+V++ LLPMGD+FS VVL+LQ+ETA+RL + S+++ EYR IN+FV
Sbjct: 176 KLAKVVSNLPFNVSTEVVRLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEYRLINVFV 235
Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336
NFYSEPEYKF+V R NFFPQPKVD AV++FKLK A +YP V+SAF GKRK
Sbjct: 236 NFYSEPEYKFRVNRENFFPQPKVDGAVISFKLKNAEEYPP----------VNSAFMGKRK 285
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPATA 364
MLRKSLQHLC+S EIE ALG++GLP TA
Sbjct: 286 MLRKSLQHLCSSSEIESALGNIGLPVTA 313
>gi|242063872|ref|XP_002453225.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor]
gi|241933056|gb|EES06201.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor]
Length = 261
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/250 (66%), Positives = 209/250 (83%), Gaps = 1/250 (0%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRKSLGQ+YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT LL AGATV A+EKD+H
Sbjct: 2 PRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGATVFAVEKDKH 61
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSSGFAKVVANIPFNISTDV 233
M LV++RF S +QLKV++ED K HIRSH L E+ ++ AKVV+N+PFN+S++V
Sbjct: 62 MATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSSEV 121
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+K LLPMGD+FS VVL+LQ+ETA+RL + S++ EYRPIN+FVNFYS+PEYKF+V R NF
Sbjct: 122 VKLLLPMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVFVNFYSKPEYKFRVDRENF 181
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
FP+PKV+ AV++FKLK A +YP V+S KSFFSMV+SAF GKRKMLRKSLQHLC+S EIE
Sbjct: 182 FPRPKVNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCSSSEIEA 241
Query: 354 ALGDVGLPAT 363
AL ++GLP T
Sbjct: 242 ALDNIGLPVT 251
>gi|300681336|emb|CAZ96067.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570]
Length = 319
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 161/246 (65%), Positives = 204/246 (82%), Gaps = 1/246 (0%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
G +YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT LL AGATV A+EKD+HM L+
Sbjct: 54 GANYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGATVFAVEKDKHMATLI 113
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSSGFAKVVANIPFNISTDVIKQLL 238
++RF S +QLKV++ED K HIRSH L E+ ++ AKVV+N+PFN+ST+V+K LL
Sbjct: 114 KDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSTEVVKLLL 173
Query: 239 PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPK 298
PMGD+FS VV++LQ+ETA+RL + S++ EYRPIN+FVNFYS+PEYKF+V R NFFPQPK
Sbjct: 174 PMGDVFSVVVIMLQDETAVRLADTSIQIPEYRPINVFVNFYSKPEYKFRVDRDNFFPQPK 233
Query: 299 VDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDV 358
V+ AV++FKLK A +YP V+S KSFFSMV+SAF GKRKMLRKSLQHLC+S EIE AL ++
Sbjct: 234 VNGAVISFKLKNAEEYPPVSSPKSFFSMVNSAFMGKRKMLRKSLQHLCSSSEIEAALDNI 293
Query: 359 GLPATA 364
GLP TA
Sbjct: 294 GLPVTA 299
>gi|222622078|gb|EEE56210.1| hypothetical protein OsJ_05183 [Oryza sativa Japonica Group]
Length = 314
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/294 (57%), Positives = 213/294 (72%), Gaps = 31/294 (10%)
Query: 89 ACIVCARSQ-DDDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVL 146
A +V A S D YH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VL
Sbjct: 44 ATVVSAASGVTDGYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVL 103
Query: 147 EIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206
EIGPGTGSLT LL+AGATV A+EKD+HM LV +RF S +QLK+++ED K ++RSH L
Sbjct: 104 EIGPGTGSLTAALLDAGATVFAVEKDKHMATLVNDRFGSTEQLKIIEEDITKFNVRSHFL 163
Query: 207 SLFERRKSSS-GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLR 265
E + + +AKVV+N+PFN+ST+V+K LLPMGD+FS +VLLLQ+ETALR + S++
Sbjct: 164 PFLEEKSHHTRKYAKVVSNLPFNVSTEVVKLLLPMGDVFSVMVLLLQDETALRFADASIQ 223
Query: 266 TSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS 325
T EYRPIN+FVNFYSEPEYKFKV RTNFFPQPKV+
Sbjct: 224 TPEYRPINVFVNFYSEPEYKFKVERTNFFPQPKVN------------------------- 258
Query: 326 MVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATAAADYKFPITLPSTEY 379
SAFNGKRKMLRKSLQHLC+S EIE AL ++GLP T + +PS+ +
Sbjct: 259 ---SAFNGKRKMLRKSLQHLCSSSEIEAALANIGLPVTCPCMDDLDVCVPSSNF 309
>gi|218189952|gb|EEC72379.1| hypothetical protein OsI_05650 [Oryza sativa Indica Group]
Length = 603
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 166/278 (59%), Positives = 207/278 (74%), Gaps = 31/278 (11%)
Query: 89 ACIVCARSQ-DDDYHATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVL 146
A +V A S D YH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VL
Sbjct: 44 ATVVSAASGVTDGYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVL 103
Query: 147 EIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206
EIGPGTGSLT LL+AGATV A+EKD+HM LV +RF S +QLK+++ED K ++RSH L
Sbjct: 104 EIGPGTGSLTAALLDAGATVFAVEKDKHMATLVNDRFGSTEQLKIIEEDITKFNVRSHFL 163
Query: 207 SLFERRKS-SSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLR 265
E + + +AKVV+N+PFN+ST+V+K LLPMGD+FS +VLLLQ+ETALR + S++
Sbjct: 164 PFLEEKSHHTRKYAKVVSNLPFNVSTEVVKLLLPMGDVFSVMVLLLQDETALRFADASIQ 223
Query: 266 TSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS 325
T EYRPIN+FVNFYSEPEYKFKV RTNFFPQPKV+
Sbjct: 224 TPEYRPINVFVNFYSEPEYKFKVERTNFFPQPKVN------------------------- 258
Query: 326 MVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPAT 363
SAFNGKRKMLRKSLQHLC+S EIE AL ++GLP T
Sbjct: 259 ---SAFNGKRKMLRKSLQHLCSSSEIEAALANIGLPVT 293
>gi|413926671|gb|AFW66603.1| hypothetical protein ZEAMMB73_716849 [Zea mays]
Length = 331
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 152/237 (64%), Positives = 195/237 (82%), Gaps = 2/237 (0%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+Y LNS++N++L AAA V+EGD+VLEIGPGTGSLT+
Sbjct: 51 DDYHSTIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTS 110
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 111 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYGATK 170
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+RL + S+++ EYR IN+FV
Sbjct: 171 KLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEYRSINVFV 230
Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNG 333
+FYSEPEYKF+V R NFFP+PKVD AV++FKLK A +YP V+S KSFFSMVSS G
Sbjct: 231 DFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSMVSSGSWG 287
>gi|302818711|ref|XP_002991028.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii]
gi|300141122|gb|EFJ07836.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii]
Length = 344
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 162/295 (54%), Positives = 213/295 (72%), Gaps = 4/295 (1%)
Query: 71 PTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEIN 130
P R A SI+ GA S+ + + ++Y T++AL SK R P++ LGQ+YM+NS IN
Sbjct: 22 PCRGAKCSISC---GATSSSSSSSSNSSENYRRTLEALKSKNRRPKRWLGQNYMVNSNIN 78
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
D++ AA +Q GD+VLEIGPGTG+LT+ LL AGA V+A+EKD MV LV ERF ++K
Sbjct: 79 DEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAYVIAVEKDPDMVSLVSERFKDNPRVK 138
Query: 191 VL-QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
VL Q+D +K HIR H+ + E KS S KVV+N+PFNI+TDV+K+LLPMGD+FS VVL
Sbjct: 139 VLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVSNLPFNITTDVVKKLLPMGDLFSNVVL 198
Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 309
LLQ+E A R ++ S + EYRPI+IF+ F+SE EYKFKV R NFFP P V+ AVV+F LK
Sbjct: 199 LLQDEAAARFIDDSPKGDEYRPISIFIRFFSEMEYKFKVDRLNFFPPPPVNGAVVSFSLK 258
Query: 310 QATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATA 364
++ YP V S K FF++V+SAF GKRKMLR SL+HL +S E+E AL +G+ TA
Sbjct: 259 DSSQYPEVKSVKRFFTLVNSAFTGKRKMLRTSLRHLYSSSEVENALCSIGVVETA 313
>gi|302820073|ref|XP_002991705.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii]
gi|300140554|gb|EFJ07276.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii]
Length = 344
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 162/295 (54%), Positives = 213/295 (72%), Gaps = 4/295 (1%)
Query: 71 PTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEIN 130
P R A SI+ GA S+ + + ++Y T++AL SK R P++ LGQ+YM+NS IN
Sbjct: 22 PCRGAKCSISC---GATSSSSSSSSNSSENYRRTLEALKSKNRRPKRWLGQNYMVNSNIN 78
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
D++ AA +Q GD+VLEIGPGTG+LT+ LL AGA V+A+EKD MV LV ERF ++K
Sbjct: 79 DEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAYVIAVEKDPDMVSLVSERFKDNPRVK 138
Query: 191 VL-QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
VL Q+D +K HIR H+ + E KS S KVV+N+PFNI+TDV+K+LLPMGD+FS VVL
Sbjct: 139 VLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVSNLPFNITTDVVKKLLPMGDLFSNVVL 198
Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 309
LLQ+E A R ++ S + EYRPI+IF+ F+SE EYKFKV R NFFP P V+ AVV+F LK
Sbjct: 199 LLQDEAAARFIDDSPKGDEYRPISIFIRFFSEMEYKFKVDRLNFFPPPPVNGAVVSFSLK 258
Query: 310 QATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATA 364
++ YP V S K FF++V+SAF GKRKMLR SL+HL +S E+E AL +G+ TA
Sbjct: 259 DSSQYPEVKSVKRFFTLVNSAFTGKRKMLRTSLRHLYSSSEVENALCSIGVIETA 313
>gi|8570453|gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transferase (PFC1) from Arabidopsis
thaliana gb|AF051326 and contains a Ribosomal RNA
Adenine Dimethylases PF|00398 domain. This gene may be
cut off, partial [Arabidopsis thaliana]
Length = 239
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)
Query: 91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
+ C +S DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106
Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
GTGSLTNVL+N GATVLAIEKD HMV LV ERFA D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166
Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
R+ S S AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226
Query: 268 EYRPINIFVNFYS 280
EYRPINI +NFYS
Sbjct: 227 EYRPINILINFYS 239
>gi|224130164|ref|XP_002320768.1| predicted protein [Populus trichocarpa]
gi|222861541|gb|EEE99083.1| predicted protein [Populus trichocarpa]
Length = 210
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/210 (73%), Positives = 173/210 (82%), Gaps = 6/210 (2%)
Query: 75 AHSSIAGVQKGAASACIVCA-RSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQL 133
AH+S+ K I CA + DDYHAT+KALNS+ R PRKSLGQHYMLN EIN+QL
Sbjct: 3 AHNSLTSPPKRTLD--ITCASKRSPDDYHATLKALNSRDRRPRKSLGQHYMLNDEINEQL 60
Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193
A+A V+EGD++LEIGPGTGSLTNVL++AGATVLAIEKD HM LVRERFA ++ KVLQ
Sbjct: 61 VASANVEEGDLILEIGPGTGSLTNVLIDAGATVLAIEKDAHMAALVRERFADTNRFKVLQ 120
Query: 194 EDFVKCHIRSHMLSLFERRKSSSG---FAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
EDF+KCHIRSHMLS+ E S S +AKVVANIPFNISTDVIKQLLP GDIFSE+VLL
Sbjct: 121 EDFIKCHIRSHMLSMLESMGSLSEKPRYAKVVANIPFNISTDVIKQLLPTGDIFSEIVLL 180
Query: 251 LQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LQ+ETALRLVE SLRTSEYRPINIFVNFYS
Sbjct: 181 LQDETALRLVESSLRTSEYRPINIFVNFYS 210
>gi|168011526|ref|XP_001758454.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690489|gb|EDQ76856.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 318
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 157/291 (53%), Positives = 202/291 (69%), Gaps = 6/291 (2%)
Query: 77 SSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAA 136
SS A + GA S V S++D T+KAL S+ P+K LGQHYMLN ++N + A
Sbjct: 8 SSCAHIPGGAFSYSDV---SREDAARNTLKALKSQNHRPKKWLGQHYMLNDQVNIDMVEA 64
Query: 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
A +Q GD+VLEIGPGTGSLTN L+ AGA ++A+EKD M L+ ERF Q++++ EDF
Sbjct: 65 AKIQPGDLVLEIGPGTGSLTNALVEAGADIIAVEKDPDMAALITERFGHCGQVEIINEDF 124
Query: 197 VKCHIRSHMLSLFERRKSSS---GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQE 253
VK +M +R S AKV+AN+PFNI+T V+KQLLP+G FS ++LLLQ+
Sbjct: 125 VKWPAALYMQQALRKRFGESEPPPRAKVIANLPFNITTQVVKQLLPLGCTFSHIILLLQD 184
Query: 254 ETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD 313
E A+RLV+ S EYRPI+I +NF+S PEYKF+V R NF P PKVDA VV+F LKQ ++
Sbjct: 185 EAAIRLVDASPDAEEYRPISILINFFSVPEYKFRVERDNFLPPPKVDAGVVSFALKQESE 244
Query: 314 YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATA 364
YP V+S KSFF+MV+SAFNGKRKMLRKSLQHL + + AL +GL TA
Sbjct: 245 YPQVSSIKSFFTMVNSAFNGKRKMLRKSLQHLHSPEATKSALTSIGLLETA 295
>gi|326513775|dbj|BAJ87906.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 227
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/215 (60%), Positives = 169/215 (78%), Gaps = 7/215 (3%)
Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183
MLN+ +N++L AAA V+ GD+VLEIGPGTGSLT LL AGATV+A+EKD+HM LVR+RF
Sbjct: 1 MLNARVNEELVAAAGVEVGDVVLEIGPGTGSLTAALLAAGATVVAVEKDKHMATLVRDRF 60
Query: 184 ASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGD 242
S +QLKV++ED K H+ SH L + E+ + + +AKVVAN+PFN+ST+V+KQ+LPMGD
Sbjct: 61 GSTEQLKVIEEDITKFHVHSHFLPILDEKSRGTKKYAKVVANLPFNVSTEVVKQILPMGD 120
Query: 243 IFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAA 302
+FS +VL+LQ+E ALRL S++T EYRPIN+FVNFYSEPEYKFKV R NFFPQP VD
Sbjct: 121 VFSVMVLMLQDEAALRLANASIQTPEYRPINVFVNFYSEPEYKFKVERANFFPQPTVDGG 180
Query: 303 VVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKM 337
V+ FK+K A +YP V+S KSFF FNG+ ++
Sbjct: 181 VIRFKIKDAGEYPPVSSNKSFF------FNGELRV 209
>gi|449533844|ref|XP_004173881.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like,
partial [Cucumis sativus]
Length = 139
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/139 (79%), Positives = 123/139 (88%), Gaps = 3/139 (2%)
Query: 191 VLQEDFVKCHIRSHMLSLF---ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEV 247
VL EDFVKC++ SHM+SL E ++ S AKVV+NIPFNISTD+IKQLLPMGDIFSEV
Sbjct: 1 VLNEDFVKCNVSSHMMSLLKSIELSEARSQPAKVVSNIPFNISTDIIKQLLPMGDIFSEV 60
Query: 248 VLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFK 307
VLLLQEE ALRLVE SLRTSEYRPIN+FVNFYS+PE KFKVPRTNFFPQP VDAAVV+FK
Sbjct: 61 VLLLQEEAALRLVETSLRTSEYRPINVFVNFYSDPELKFKVPRTNFFPQPNVDAAVVSFK 120
Query: 308 LKQATDYPAVTSTKSFFSM 326
LK+A DYPAV+STKSFFSM
Sbjct: 121 LKRAADYPAVSSTKSFFSM 139
>gi|255088241|ref|XP_002506043.1| predicted protein [Micromonas sp. RCC299]
gi|226521314|gb|ACO67301.1| predicted protein [Micromonas sp. RCC299]
Length = 266
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 155/248 (62%), Gaps = 8/248 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH++++ + AAAV +GD +LEIGPGTG+LT L+ AGA + A+EKD+++
Sbjct: 1 RRWLGQHFLIDHSVILDALDAAAVTDGDRILEIGPGTGNLTVELVKAGAVITAVEKDRNL 60
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG---FAKVVANIPFNISTD 232
+R ++ D + V + DF+K ++ FE R G AKVVANIP+NI+TD
Sbjct: 61 ADKLRTQYDGDDAVTVHEADFLKWNVARE----FEHRGVYPGDAHRAKVVANIPYNITTD 116
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
++K LLPMGD F ++V + QEE A RL+ S+YRP+++ V++YSEP Y V +
Sbjct: 117 ILKTLLPMGDTFGDMVFMFQEEVARRLIRQDSGASDYRPMSVRVHYYSEPYYIRPVTASC 176
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI 351
F P P V++ +V F+ K + PA+ T K FFS V + F KRKML+ +L+ +C I
Sbjct: 177 FDPPPNVESCLVGFRPKPRRELPALRGTEKQFFSFVQACFAQKRKMLKNNLRAVCDDEVI 236
Query: 352 EKALGDVG 359
AL D+G
Sbjct: 237 AAALEDLG 244
>gi|308807535|ref|XP_003081078.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri]
gi|116059540|emb|CAL55247.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri]
Length = 363
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 152/244 (62%), Gaps = 6/244 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH+++++ + AA + EGD VLEIGPGTG+LT LL+ GA VLA+EKD+++
Sbjct: 85 RRWLGQHFLIDASVVTDAVEAARLNEGDRVLEIGPGTGNLTCELLSRGANVLAVEKDRNL 144
Query: 176 VGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+R+ + L++++ DF+K + + F R AKVVANIP+NI+TDV
Sbjct: 145 AEKLRKGLCVEHGEALRLVEGDFLKW---DGLAAAFARTSPEQPRAKVVANIPYNITTDV 201
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+K LLPMGD+F +++ + QEE A RLV +YR +++ V++YS+P Y VP T F
Sbjct: 202 LKVLLPMGDVFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRFVPPTCF 261
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKS-FFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
P P VD+ ++ FK K+ + + T++ FF+ V + F KRKMLR +L+ +C +E
Sbjct: 262 MPPPNVDSCLIGFKPKEPHELLPLNGTENQFFTFVQACFAQKRKMLRNNLKAVCEENTME 321
Query: 353 KALG 356
A
Sbjct: 322 GAFA 325
>gi|145350183|ref|XP_001419496.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579728|gb|ABO97789.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 268
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 152/250 (60%), Gaps = 8/250 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH+++++ + AA + G+ VLEIGPGTG+LTN +L GA VLA+EKD+++
Sbjct: 2 RRWLGQHFLVDASVVTDAVEAARLGAGERVLEIGPGTGNLTNEMLKRGARVLAVEKDRNL 61
Query: 176 VGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+RE D ++++ DF+K + + FER + AKVVANIP+NI+TDV
Sbjct: 62 AEKLREGLCVEYKDAFELVEGDFLKW---DGLATAFERATPETPRAKVVANIPYNITTDV 118
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+K LLPMGD F +++ + QEE A RLV +YR +++ V++YS+P Y V R F
Sbjct: 119 LKVLLPMGDTFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYSKPYYIRPVLRDCF 178
Query: 294 FPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
P P V++ ++ FK K+ + P + K FF+ V + F KRKMLR +L+ +C ++
Sbjct: 179 MPPPNVESCLIGFKPKEPHELLPLNGTDKQFFTFVQACFAQKRKMLRNNLKAVCDEATMD 238
Query: 353 KALG--DVGL 360
A D GL
Sbjct: 239 GAFALLDRGL 248
>gi|303275612|ref|XP_003057100.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461452|gb|EEH58745.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 274
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 148/259 (57%), Gaps = 8/259 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH++++ + AA V+ GD +LEIGPGTG+LT LL+AGA V A+EKD+++
Sbjct: 1 RRWLGQHFLVDRSVILDALDAADVRAGDSILEIGPGTGNLTAELLSAGAVVTAVEKDRNL 60
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHM-------LSLFERRKSSSGFAKVVANIPFN 228
+ E F + L V + DF+K ++ + + AKVVANIP+N
Sbjct: 61 ADKLAETFRGNENLTVHEADFLKWNVAKAFPEPTDAAAADAALGDGAPRRAKVVANIPYN 120
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+TD++K LLPMGD F +V + QEE A RL+ S+YRP+++ V +YSEP Y V
Sbjct: 121 ITTDILKVLLPMGDTFENMVFMFQEEVARRLIRDDAGGSDYRPMSVRVRYYSEPYYVRPV 180
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDY-PAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
F P P V++ ++ F+ ++ +Y P + + FF+ V + F KRKML+ +++ C
Sbjct: 181 SAACFDPPPNVESCLIGFRPRRREEYLPLAGTERQFFAFVQTCFAQKRKMLKNNMRAACD 240
Query: 348 SLEIEKALGDVGLPATAAA 366
I AL + P A
Sbjct: 241 DDTIRDALATLNRPEKTRA 259
>gi|293333490|ref|NP_001168088.1| uncharacterized protein LOC100381822 [Zea mays]
gi|223945939|gb|ACN27053.1| unknown [Zea mays]
Length = 170
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 102/124 (82%)
Query: 210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEY 269
E+ ++ AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+RL + S+++ EY
Sbjct: 3 EKYGATKKLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEY 62
Query: 270 RPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSS 329
R IN+FV+FYSEPEYKF+V R NFFP+PKVD AV++FKLK A +YP V+S KSFFSMVSS
Sbjct: 63 RSINVFVDFYSEPEYKFRVDRENFFPRPKVDGAVISFKLKNAEEYPPVSSPKSFFSMVSS 122
Query: 330 AFNG 333
G
Sbjct: 123 GSWG 126
>gi|297621735|ref|YP_003709872.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
gi|297377036|gb|ADI38866.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
gi|337292724|emb|CCB90731.1| Ribosomal RNA small subunit methyltransferase A [Waddlia
chondrophila 2032/99]
Length = 283
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 155/275 (56%), Gaps = 24/275 (8%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G P+KSL Q+++++ I D++ + A + D VLEIGPG G+LT+ L GA VLA+EK
Sbjct: 26 GISPKKSLSQNFLIDGNIIDKIISLAEINAQDQVLEIGPGPGALTDALHQHGARVLAVEK 85
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D+ + ++ER I +V+ ED +K + + S A V+AN+P+NI++
Sbjct: 86 DRILAKALQERGGDI---RVICEDVLKVDLEKEL----------SERATVIANLPYNITS 132
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
++ LLP +F +V+++Q E A RL P +T Y + +F N +S P++ FKV R
Sbjct: 133 PILTSLLPKTHVFKRIVVMVQLEVAERLTASPGNKT--YGSLTVFSNLFSTPQWGFKVSR 190
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
FFP+P VD+AVV F L + P ++FF ++ +AF +RKML+ SL+ L S
Sbjct: 191 RCFFPEPNVDSAVVRFDL---SPPPKEVEDEAFFQLIRTAFGQRRKMLKSSLKKLYPSSS 247
Query: 351 IEKALGDVGLPATAAADYKFPITLPSTEYTLFMEH 385
+ +AL +G TA P L S ++ F H
Sbjct: 248 VMQALAGIGFQETAR-----PEELSSNQFVEFYRH 277
>gi|384246022|gb|EIE19514.1| hypothetical protein COCSUDRAFT_83565, partial [Coccomyxa
subellipsoidea C-169]
Length = 269
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 150/260 (57%), Gaps = 10/260 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
+SLGQ+++ + E+ ++ A+A ++ GD +LEIGPG GSLT+ LL+ GA+VLAIEKD +
Sbjct: 1 RSLGQNFVTSEEVLQRIIASAKIRRGDKILEIGPGLGSLTDCLLDCGASVLAIEKDDVLY 60
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF--------AKVVANIPFN 228
G ++++FA +E V I S +L L R+ F +VVANIP+N
Sbjct: 61 GHLQQKFAKAHPQPHTKEPAVSL-IHSDVLLLKNIRQILDDFKGDSEQPSVRVVANIPYN 119
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEY-RPINIFVNFYSEPEYKFK 287
I++DV+K +LP+ S V LLL++ A RL E +Y R I++ +NFY+ P Y FK
Sbjct: 120 ITSDVLKMMLPLKHQLSHVHLLLEDGAARRLTEARPGDKDYSRAISVLINFYANPRYSFK 179
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
V R FFP+P VD+A F L TD + F VS+AF KRK L +L+ +
Sbjct: 180 VGRNAFFPEPHVDSAFTEFALASKTDQLHGAGEQEFLDFVSAAFVSKRKTLVNNLKVRFS 239
Query: 348 SLEIEKALGDVGLPATAAAD 367
+ K L + + +TA A+
Sbjct: 240 PDAVIKELTALRIASTARAE 259
>gi|161611309|ref|YP_007394.2| dimethyladenosine transferase [Candidatus Protochlamydia
amoebophila UWE25]
gi|62900537|sp|Q6ME80.2|RSMA_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
Length = 284
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 149/256 (58%), Gaps = 16/256 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G FP+K L Q+++++ I ++ A+ VQ G++VLEIGPG GSLT +L A V+
Sbjct: 13 LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72
Query: 168 AIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
A+EKD L RE RF + QL++ ED + + + S R AKV+AN
Sbjct: 73 AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPE 283
+P++++T ++ +++ +FS + +++QEE A R+ P S+Y IF+NFYS+P
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYSKPR 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
Y F V R F+P PKVD+A+V +LK+ P + FF + +AF +RKMLR SL+
Sbjct: 184 YGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAFEQRRKMLRASLK 240
Query: 344 HLCTSLEIEKALGDVG 359
L +I AL +G
Sbjct: 241 SLFDPSKISNALEIIG 256
>gi|449531773|ref|XP_004172860.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like,
partial [Cucumis sativus]
Length = 150
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 85/92 (92%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
DDYH+TI+ALNSKGR PRKSLGQHYMLNS IN+QLAAAA V+EGD+VLEIGPGTGSLTNV
Sbjct: 59 DDYHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNV 118
Query: 159 LLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
L+N+GATVLA+EKD +M GLV ERFA+ ++LK
Sbjct: 119 LINSGATVLAVEKDSYMAGLVDERFANTNRLK 150
>gi|302830902|ref|XP_002947017.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f.
nagariensis]
gi|300268061|gb|EFJ52243.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f.
nagariensis]
Length = 463
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 158/301 (52%), Gaps = 50/301 (16%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + + AAA V D+VLE+GPGTG+LT LL +GA V A+EKD +
Sbjct: 107 KKSLGQNFLTDDAVLQDIVAAAGVGPQDLVLEVGPGTGNLTKHLLASGAGVTAVEKDDTL 166
Query: 176 VGLVRERFASIDQLKVLQEDFVKCH----IRSHMLSLFER-------------------- 211
G +++ + + +L ++ D +K IR ML +
Sbjct: 167 YGRLQKEYGDVPRLTLIHGDALKVGLEDIIRGMMLQQDRQDPAASSESVSSAESALASTS 226
Query: 212 ---------RKSSSGFA-----KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETAL 257
+ SS A KVVAN+P+NI+ D++ LLP+GD S++ +++Q E A+
Sbjct: 227 TSGASSRGYKPGSSAAAGGRKVKVVANLPYNITKDLLTLLLPLGDWISDLHIMIQHEAAV 286
Query: 258 RLVEPSLRTSEYRPINIFVNFYSEPE------------YKFKVPRTNFFPQPKVDAAVVT 305
RL E + E+R NI FY P Y+F++ R + P P VD A+VT
Sbjct: 287 RLTEHTPGGPEWRAANIRTLFYCRPRHGGGWAGRGRSRYRFRISRLKYDPVPGVDGALVT 346
Query: 306 FKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATAA 365
F L + PAV S ++F S+V AF+ +RK +R SLQ L + ++E AL + GL A +
Sbjct: 347 FSLIPPSARPAVPSERAFHSLVVKAFSERRKKMRNSLQPLYGAEQVEAALSECGLNADSR 406
Query: 366 A 366
A
Sbjct: 407 A 407
>gi|282891871|ref|ZP_06300350.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338176218|ref|YP_004653028.1| ribosomal RNA smaLL subunit methyltransferase A [Parachlamydia
acanthamoebae UV-7]
gi|281498131|gb|EFB40471.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480576|emb|CCB87174.1| ribosomal RNA smaLL subunit methyltransferase A [Parachlamydia
acanthamoebae UV-7]
Length = 282
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 151/262 (57%), Gaps = 12/262 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LNS G P+K L Q+++++ I ++AA AA D++LEIGPG GSLT LL GA V+
Sbjct: 13 LNSLGIRPKKGLSQNFLIDGNIIRKIAATAAASSDDVILEIGPGPGSLTECLLETGAQVI 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+EKD + + L+V ED +K I S+F++ + AKV+AN+P+
Sbjct: 73 AVEKDNQLAEALIRLQTPAQTLQVHCEDILKFPIE----SVFKQELKAGKKAKVIANLPY 128
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKF 286
++++ ++ +L P+ FS + +++QEE A R P R E+ +F+NF+S P Y F
Sbjct: 129 HLTSSILAELAPLHAYFSTITVMVQEEVARRFTAMPGSR--EFSAFTLFLNFFSNPVYNF 186
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
KV + F+P PKVD+AV+T LK P + FF++ AF +RKM++ +L+ +
Sbjct: 187 KVGKQCFYPAPKVDSAVMTLHLKS----PPQVDQQGFFTLTRKAFEQRRKMIKSALKSIY 242
Query: 347 TSLEIEKALGDVGL-PATAAAD 367
++ +AL +G+ P A D
Sbjct: 243 EPEKVMQALEGIGINPLVRAED 264
>gi|338734041|ref|YP_004672514.1| ribosomal RNA small subunit methyltransferase A [Simkania
negevensis Z]
gi|336483424|emb|CCB90023.1| ribosomal RNA small subunit methyltransferase A [Simkania
negevensis Z]
Length = 270
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 150/264 (56%), Gaps = 30/264 (11%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
K L P+KSL Q+++++ I ++ ++ V +GD VLE+GPG G LT LL GA
Sbjct: 11 KLLEDLKTHPKKSLSQNFLIDGNIVRKIIESSRVTDGDHVLEVGPGPGVLTEALLGKGAY 70
Query: 166 VLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V AIEKD +RFA+ +L ++ +DF+K +LS+ + +
Sbjct: 71 VTAIEKD--------DRFATALEDWNHPKLTIVHDDFLKV----DLLSVLKEK------T 112
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVANIP++I+ ++++LLPMG + + L++Q+E A RLV T+ Y +F +Y
Sbjct: 113 KVVANIPYSITGILLQKLLPMGKQIASLTLMVQKEVAERLVAKK-GTNSYSSFTLFAFYY 171
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
S P+ F V T F+P+PKV +AVV LK+ + + S ++ AF +RKMLR
Sbjct: 172 STPQLLFSVEPTCFYPRPKVTSAVVQLTLKEVNE-----NAPSPLQLIRIAFQQRRKMLR 226
Query: 340 KSLQHLCTSLEIEKALGDVGLPAT 363
SL+ L T+ ++E AL ++GL T
Sbjct: 227 ASLKSLYTATQVESALKEMGLSVT 250
>gi|412990834|emb|CCO18206.1| dimethyladenosine transferase [Bathycoccus prasinos]
Length = 406
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 150/265 (56%), Gaps = 24/265 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH++++ + +A V + D++LEIGPGTG+LT LL G V+A+EKD+++
Sbjct: 97 RRWLGQHFLIDHSVLIDAVRSADVTKEDVILEIGPGTGNLTAELLRTGCKVIAVEKDRNL 156
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCH-IRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
+RE D+L++++EDF+K + + + L + AKVVANIP+NI+T
Sbjct: 157 AKTLRETLGKEFGEDELEIIEEDFMKWKDLDTKFVGLID---GGEKRAKVVANIPYNITT 213
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRLV----------------EPSLRTSEYRPINIF 275
D++K+LLPMGD F ++V + QEE A RL + S++R +++
Sbjct: 214 DILKRLLPMGDTFEDLVFMFQEEVARRLATEERGEKMIENANEVKKKKKSNSDFRAMSVR 273
Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGK 334
+YSE Y V + F P P V++ ++ FK K+ + T K FF+ V S F K
Sbjct: 274 TAYYSESRYIRPVAKDCFDPPPNVESCLIGFKPKRKEHLLKINGTEKQFFTFVQSCFAQK 333
Query: 335 RKMLRKSLQHLCTSLEIEKALGDVG 359
RKML+ +L+ C + I+ AL +G
Sbjct: 334 RKMLKNNLRGTCDAETIDLALEILG 358
>gi|46399670|emb|CAF23119.1| putative dimethyladenosine transferase [Candidatus Protochlamydia
amoebophila UWE25]
Length = 256
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 138/240 (57%), Gaps = 16/240 (6%)
Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE-- 181
M++ I ++ A+ VQ G++VLEIGPG GSLT +L A V+A+EKD L RE
Sbjct: 1 MIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVVAVEKD---FVLARELK 57
Query: 182 RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
RF + QL++ ED + + + S R AKV+AN+P++++T ++ +++
Sbjct: 58 RFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIANLPYHLTTPILAEMVVR 113
Query: 241 GDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
+FS + +++QEE A R+ P S+Y IF+NFYS+P Y F V R F+P PKV
Sbjct: 114 RKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYSKPRYGFTVSRNCFYPAPKV 171
Query: 300 DAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVG 359
D+A+V +LK+ P + FF + +AF +RKMLR SL+ L +I AL +G
Sbjct: 172 DSAIVVLELKEP---PPNIDAQVFFKITRTAFEQRRKMLRASLKSLFDPSKISNALEIIG 228
>gi|304438967|ref|ZP_07398890.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372633|gb|EFM26216.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 284
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 148/253 (58%), Gaps = 22/253 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I ++A A V+EG VLEIGPG G+LT LL GA VLA+E D+++V
Sbjct: 23 KSLGQNFLIDGNIVRRIADGAGVEEGSNVLEIGPGVGTLTEELLLRGANVLAVEIDKNLV 82
Query: 177 GLVRERFASIDQLKVLQEDFVKC---HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ ++ + D++K++ +DF++ I+S++ G KVVAN+P+ ++T +
Sbjct: 83 D-IHKKTLNYDRVKIIYDDFLRLDTEEIKSYL----------KGPIKVVANLPYYVTTPI 131
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
I ++L + +++Q+E A R + T +Y +++F+N+Y+EP+Y F VP++ F
Sbjct: 132 ITKILESDLEVESITVMVQKEVANRFAAEA-GTKDYGSLSVFINYYAEPKYLFSVPKSVF 190
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL----CTSL 349
P+P VD+AVV ++K+ + F +V AF+ +RK + +L T
Sbjct: 191 MPKPNVDSAVVKLEIKK---HREDIDKDKLFRVVRGAFSKRRKTILNALSTYGFKNITKT 247
Query: 350 EIEKALGDVGLPA 362
EI +AL G+ A
Sbjct: 248 EIAEALKISGIDA 260
>gi|210623277|ref|ZP_03293694.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
gi|210153678|gb|EEA84684.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
Length = 286
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 148/263 (56%), Gaps = 11/263 (4%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
+ AT ++ G KSLGQ+++++ + D++ A V+EGD V+E+GPG G+LT +
Sbjct: 7 HRATKDIVDKHGFKFSKSLGQNFLIDDNVIDKIIDGARVKEGDKVIEVGPGIGTLTREMA 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+A+E D++++ +++E A D +V+ ED +K I + K S G K
Sbjct: 67 KRAEKVVAVEIDKNLIPILKETLADFDNTEVVNEDILKVDINKLV-----DEKLSGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
++AN+P+ I+T ++ + L +++V+++Q+E A R+ PS T +Y +++ V +Y
Sbjct: 122 LIANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAVPS--TKDYGALSVAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ E K PR F PQPKVD+ V+ +++ Y A + + FF V +AF +RK L
Sbjct: 180 CDTEIVAKAPRHMFIPQPKVDSTVIGLHIREERKYKA-DNEQLFFKTVKAAFGQRRKTLL 238
Query: 340 KSLQHL--CTSLEIEKALGDVGL 360
SL + +I++ L + G+
Sbjct: 239 NSLSSMGVLDKAKIKEVLAEAGI 261
>gi|406838309|ref|ZP_11097903.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus vini DSM 20605]
Length = 296
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 137/239 (57%), Gaps = 8/239 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ N + ++ A A + + D V+EIGPG G+LT L VLA+E DQ +
Sbjct: 26 KKSLGQNFLTNLALLQKMVAVAEIGQDDDVIEIGPGIGALTEQLAQKARRVLALEVDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +LQ+D + +++ L ++ KVVAN+P+ I++ +IK
Sbjct: 86 LPVLAETLADYQNITILQQDI----LTANLAELIDQYLPGHQQIKVVANLPYYITSPIIK 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL S +V+++Q+E A RL +T Y +++ V + E KVP+T+F P
Sbjct: 142 FLLQQPVALSVIVVMMQKEVAERLAAVP-QTKAYGALSVLVQHQRKVELALKVPKTSFVP 200
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
QPKVD+AV+ KL QAT YP + S+ +F +V F +RK L+ +LQ LC E K
Sbjct: 201 QPKVDSAVI--KLTQATQVYPPLLSSTAFSRVVQGCFLHRRKNLKNNLQSLCGKDETTK 257
>gi|121534378|ref|ZP_01666202.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1]
gi|121307148|gb|EAX48066.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1]
Length = 283
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 146/252 (57%), Gaps = 11/252 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ L + G K LGQ+++++ ++ D + AAAAV+ G+ VLEIGPG G+LT L AG
Sbjct: 12 TLHILKTFGIQMSKKLGQNFLVDEQVVDGIVAAAAVKPGEAVLEIGPGIGTLTQGLAEAG 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
A V A+E D+ ++ ++ + A D ++++ D ++ I R + F KV+A
Sbjct: 72 ANVTAVELDRQLLDVLAKTLAGYDNVRIIHGDILRIDI--------SREIRAEKF-KVIA 122
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I +LL +V ++Q+E A R+V + + +Y +++ V FY++PE
Sbjct: 123 NLPYYITTPIIMRLLEERLPVELMVTMVQKEVAERMVA-APGSKDYGALSVAVQFYTQPE 181
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
F VP F P P V++AV+ +++ A +VT K+FF +V +AF +RK L +L+
Sbjct: 182 IMFVVPPQAFIPAPAVESAVIRCRVRSAPPV-SVTDEKAFFRVVKAAFAQRRKTLANALK 240
Query: 344 HLCTSLEIEKAL 355
+ E+ A+
Sbjct: 241 GGGIAQEVVDAM 252
>gi|296131650|ref|YP_003638897.1| dimethyladenosine transferase [Thermincola potens JR]
gi|296030228|gb|ADG80996.1| dimethyladenosine transferase [Thermincola potens JR]
Length = 292
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 149/252 (59%), Gaps = 9/252 (3%)
Query: 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
RF +K+LGQ+++++ + + A +++ D+V+EIGPG G+LT L + V+A+E D
Sbjct: 20 RF-KKALGQNFLIDRNVVTNICKTADLKKSDLVVEIGPGIGTLTEQLAHYAGHVIAVELD 78
Query: 173 QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
+ ++G++ E + + ++Q D +K ++ + + + G KVVAN+P+ I+T
Sbjct: 79 KDLIGILEENLRAYGNVTIIQNDILKVNLDKVVGDFRKEHDLAEGPYKVVANLPYYITTP 138
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
V+ L+ SE+V+++Q+E A R+ +P + +Y +++ V +Y+EP +VPRT
Sbjct: 139 VLMYLMENNFNISEIVVMIQKEVAERIAAQPG--SKDYGALSLAVRYYTEPALVMRVPRT 196
Query: 292 NFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH--LCTS 348
F P+P+VD+AV+ KLK+ + P V + F ++ +AF +RK L SL+ C
Sbjct: 197 VFIPKPEVDSAVI--KLKRLSRPPVEVKDEELLFRIIRAAFGQRRKTLLNSLRGGLGCDK 254
Query: 349 LEIEKALGDVGL 360
I+KAL VG+
Sbjct: 255 EVIKKALTQVGI 266
>gi|428304802|ref|YP_007141627.1| dimethyladenosine transferase [Crinalium epipsammum PCC 9333]
gi|428246337|gb|AFZ12117.1| dimethyladenosine transferase [Crinalium epipsammum PCC 9333]
Length = 291
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 143/273 (52%), Gaps = 30/273 (10%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + + D + AAA + EGD VLEIGPG G LT LL + +A+E D+
Sbjct: 5 PRKQFGQHWLRSEKALDNIIAAAELSEGDRVLEIGPGQGVLTRKLLPKVQSAVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++ D+ +LQ D + + +H+ S + KVVANIP+NI+ ++
Sbjct: 65 LCKVLAQKIGYFDKFLLLQGDILTLDLPAHLASF----PNFQNLNKVVANIPYNITGPIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + +VLL+Q+E A RL +P R + +++ V + +E E V
Sbjct: 121 EKLLGRIATPASAPYDLIVLLVQKEVAERLYAKPGSRA--FGALSVRVQYLAECELICSV 178
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P +F+P PKVD+AVV + +Q P K S+V F KRKMLR +L
Sbjct: 179 PARDFYPPPKVDSAVVRLRPRQFE--PQANDAKKLESLVRLGFAEKRKMLRNNL------ 230
Query: 349 LEIEKALGDVGLPATAAADYKFPITLPSTEYTL 381
KA+ D LPA +A +L EY L
Sbjct: 231 ----KAISDRFLPAIPSA------SLNENEYGL 253
>gi|302390854|ref|YP_003826674.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
gi|302202931|gb|ADL11609.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
Length = 290
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 142/259 (54%), Gaps = 12/259 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++ I D++ +A + D V+EIGPG GSLT L
Sbjct: 11 TREILEENGIQLKKSLGQNFLVDRNIIDKIIVSADLTSYDHVIEIGPGIGSLTQRLAEGA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V AIE D+ + ++ E ++ + + +Q D ++ + L S KVVA
Sbjct: 71 KAVWAIELDERFIKILEENLSNYNNVNFIQADALEYDFEQLLTKL------SGESIKVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I +LL F VV+++Q+E A R+V +Y +++ V +YS+PE
Sbjct: 125 NLPYYITTPIIMRLLEEKLPFERVVVMVQKEVAERIVATPEDGKKYGSLSLAVRYYSQPE 184
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRKMLRKS 341
VPRT F PQPKVD+A+V +++ D P V + F ++ +AF +RK +R S
Sbjct: 185 ITGTVPRTVFMPQPKVDSAIVKMEIR---DKPPVEVKDEELLFKVIQAAFQQRRKTIRNS 241
Query: 342 LQHLCTSLEIEKALGDVGL 360
L +L++++ L D L
Sbjct: 242 LSK-AANLDLKRDLVDQAL 259
>gi|218132712|ref|ZP_03461516.1| hypothetical protein BACPEC_00573 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992438|gb|EEC58441.1| dimethyladenosine transferase [[Bacteroides] pectinophilus ATCC
43243]
Length = 296
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 144/270 (53%), Gaps = 20/270 (7%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T++ + G +K GQ+++++ + +++ A + + D VLEIGPG G++T +L
Sbjct: 13 TLEIIKKYGFGFQKRFGQNFLIDGNVVEKIVREAGITKDDFVLEIGPGIGTMTQILCENA 72
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D++++ ++ E A D + V+ ED +K +R K+ KVVA
Sbjct: 73 REVAAVEIDKNLIPILAETLAPYDNVSVINEDILKVDVRK-----LAEEKNDGRPIKVVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V FY++
Sbjct: 128 NLPYYITTPIIMGLFESHVPLESITIMVQKEVAQRMQVGPG--TKDYGALSLAVQFYADA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSF-FSMVSSAFNGKRKMLRKS 341
+ KVP + F P+P VD+AV+ KL + D P + F F ++ +AFN +RK L S
Sbjct: 186 QIVLKVPASCFMPRPNVDSAVI--KLVRHEDAPVKVKDEQFMFRVIRAAFNQRRKTLANS 243
Query: 342 LQ---------HLCTSLEIEKALGDVGLPA 362
L H CT ++ AL +GLPA
Sbjct: 244 LANSSELNGSGHACTREDVTTALEAMGLPA 273
>gi|440680353|ref|YP_007155148.1| dimethyladenosine transferase [Anabaena cylindrica PCC 7122]
gi|428677472|gb|AFZ56238.1| dimethyladenosine transferase [Anabaena cylindrica PCC 7122]
Length = 271
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 145/260 (55%), Gaps = 15/260 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA +EGD +LEIGPGTG LT LL +++A+E D+
Sbjct: 4 PRKQFAQHWLKSEKALDAIVKAAQCREGDRILEIGPGTGILTRRLLPLAKSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + S +L+ +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGQKENFLLLQGDFLTLDVPSQLLAFNNFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + +VLL+Q+E A RL +P RT + +++ V + ++ E V
Sbjct: 120 EKLLGTITQPNPEPYDSIVLLVQKEVAERLYAKPGSRT--FGALSVRVQYLADCELICTV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P + F P PKVD+AVV L + + PA S K ++V F KRKMLR +LQ +
Sbjct: 178 PASAFHPPPKVDSAVVRL-LPRQIEIPA-NSPKKLENLVKLGFGAKRKMLRNNLQSVIDR 235
Query: 349 LEIEKALGDVGL-PATAAAD 367
+ + L +G+ P A D
Sbjct: 236 DLLTQLLEQLGINPQVRAED 255
>gi|357040050|ref|ZP_09101840.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
gibsoniae DSM 7213]
gi|355357030|gb|EHG04809.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
gibsoniae DSM 7213]
Length = 290
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 149/258 (57%), Gaps = 12/258 (4%)
Query: 103 ATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+T++ L + +F +K LGQ+++++ I +++ AAA+ DIV+EIGPG G+LT L
Sbjct: 7 STVRDLLQRHQFRIKKKLGQNFLIDGNIINKILNAAALNNHDIVVEIGPGIGALTCRLAQ 66
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
VLA+E D+ + L+ E +D + +++ D +K + + G+ KV
Sbjct: 67 KARQVLAVEIDRTVFPLLAETLGELDNVTLVEADALKTDFDRLVQDAIG--DPACGY-KV 123
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T +I LL ++V+++QEE A RL P+ T +Y + + N+Y+
Sbjct: 124 VANLPYYITTPLIMHLLEECSYARKIVVMVQEEVARRLTALPN--TKDYGALTVAANYYA 181
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKML 338
+ E FKVPRT F P+P+VD+AVV+ ++++ PAV S K +F++V +AF +RK L
Sbjct: 182 KVEMAFKVPRTVFLPRPEVDSAVVSMTVRES---PAVCVKSEKIYFALVRAAFQQRRKTL 238
Query: 339 RKSLQHLCTSLEIEKALG 356
+L L +K L
Sbjct: 239 LNALTSLDRDFPRDKWLN 256
>gi|51894384|ref|YP_077075.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM
14863]
gi|62900510|sp|Q67JB9.1|RSMA_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|51858073|dbj|BAD42231.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM
14863]
Length = 285
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 147/253 (58%), Gaps = 13/253 (5%)
Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+KAL ++ G P+ LGQ+++++ + D + +AA ++ D+VLEIGPG G+LT L
Sbjct: 7 GALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAA 66
Query: 162 AGATVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+ +E D+ +V ++ + + D ++V+ D + + L R + AK
Sbjct: 67 KAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLH----KLLGERLAPGQKAK 122
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
VVAN+P+ I+T ++ +LL S VV+++Q+E A R+V P + Y +++ V +Y+
Sbjct: 123 VVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYT 181
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
EP +V R +F PQP+VD+AVV+ + ++ P ++FF +V +AF G+R RK
Sbjct: 182 EPRIVLRVSRASFMPQPEVDSAVVSLRYRERP--PVDAPPEAFFRVVRAAF-GQR---RK 235
Query: 341 SLQHLCTSLEIEK 353
SL + TSL +EK
Sbjct: 236 SLVNALTSLGVEK 248
>gi|83588925|ref|YP_428934.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073]
gi|119365033|sp|Q2RME8.1|RSMA_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|83571839|gb|ABC18391.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073]
Length = 288
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 138/259 (53%), Gaps = 5/259 (1%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ + KG PRKS GQ++++++ I ++A AA V GD V+EIGPG G+LT L
Sbjct: 10 TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+AIE D+ + + E A D ++++ D +K + + + KVVA
Sbjct: 70 GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T ++ LL +E+VL++Q E R L P +Y +++ V +Y+EP
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYTEP 187
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
KVPRT F+P+P+VD+ V+ + V FF +V +AFN +RK + +L
Sbjct: 188 AVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAFNQRRKTILNAL 246
Query: 343 QHLC-TSLEIEKALGDVGL 360
L +I +AL G+
Sbjct: 247 GSLGFEKSKIMEALAGAGI 265
>gi|428311804|ref|YP_007122781.1| dimethyladenosine transferase [Microcoleus sp. PCC 7113]
gi|428253416|gb|AFZ19375.1| dimethyladenosine transferase [Microcoleus sp. PCC 7113]
Length = 297
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 134/236 (56%), Gaps = 14/236 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK QH++ + +Q+ AAA +Q+ + +LEIGPGTG LT LL +V+A+E D+ +
Sbjct: 23 RKQFAQHWLRSEAALNQIVAAAQLQKSERILEIGPGTGILTRRLLPQAESVVAVEIDRDL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ S D +LQ DF+ I + + S + KVVANIP+NI+ +++
Sbjct: 83 CKLLVQKLRSFDNFLLLQGDFLTLDIDAQLASF----PAFQNPNKVVANIPYNITGPILE 138
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+LL P D F +VLL+Q+E A RL +PS R + +++ V + +E E +VP
Sbjct: 139 KLLGTISQPAADPFDLIVLLVQKEVAERLYAKPSSRA--FGALSVRVQYLAECELICEVP 196
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
F P PKVD+AVV + ++ P T K +++ F+ KRKMLR +L+ +
Sbjct: 197 AKAFSPPPKVDSAVVRLRPRRVE--PQATEPKWLETLLKLGFSSKRKMLRNNLKSV 250
>gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
gi|134050656|gb|ABO48627.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
Length = 293
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 139/246 (56%), Gaps = 23/246 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N+ G RK+LGQ++++++ I D++ AA + GD+V EIGPG G LT L + V+
Sbjct: 14 INTYGFRVRKALGQNFLMDANIIDKIVNAAELTPGDLVFEIGPGLGVLTQRLARSAGKVI 73
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER---RKSSSGFA----- 219
A+E D++++ ++ E D +V+ D +K F+R + GF
Sbjct: 74 AVEIDKNLLPILTETLTDFDNAQVVHADALKVD--------FDRLAAEHTEGGFGKGAKS 125
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
K+VAN+P+ I+T ++ LL G F +V+++Q+E A RL + S +Y ++I V +
Sbjct: 126 FKLVANLPYYITTPILMHLLTSGFNFDCLVVMMQKEVAERL-QASPGGKDYGSLSIAVQY 184
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y+ PE +VP+T FFP P V++AV+ ++ P VT S + FF +V +AF +RK
Sbjct: 185 YTVPEIVTRVPKTVFFPAPDVESAVIQLTRRKR---PPVTLESEEVFFKVVRAAFGQRRK 241
Query: 337 MLRKSL 342
L SL
Sbjct: 242 TLLNSL 247
>gi|347524947|ref|YP_004831695.1| Dimethyladenosine transferase [Lactobacillus ruminis ATCC 27782]
gi|345283906|gb|AEN77759.1| Dimethyladenosine transferase [Lactobacillus ruminis ATCC 27782]
Length = 296
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 146/259 (56%), Gaps = 15/259 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I ++ AAA V E D V+EIGPG G+LT L + V+A+E D +
Sbjct: 26 KKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGPGIGALTEQLAKSAHQVMALEIDSRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + D +K++++D +K ++ + F+ R K+VAN+P+ I+T ++
Sbjct: 86 IPVLSETLSPYDNVKIVEQDVLKADLKELIAQNFDGRHK----IKLVANLPYYITTPIVM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + F +V+++Q+E A RL +P T +Y +++ V + + + F VP+T F
Sbjct: 142 HLLEVDVDFETIVVMMQKEVADRLAAQPG--TKDYGSLSVAVQYEMDAKIAFIVPKTVFM 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFF-SMVSSAFNGKRKMLRKSLQHL-----CTS 348
PQPKVD+A++ L + + P V + FF MV F +RK L +LQ L T
Sbjct: 200 PQPKVDSAIIA--LNRKDEKPNVPVDEPFFKKMVKGIFLHRRKSLWNNLQGLYGKDPSTK 257
Query: 349 LEIEKALGDVGLPATAAAD 367
+IE AL + + + A+
Sbjct: 258 EKIEHALKNAEIEKSVRAE 276
>gi|374307434|ref|YP_005053865.1| dimethyladenosine transferase [Filifactor alocis ATCC 35896]
gi|320120297|gb|EFE28598.2| dimethyladenosine transferase [Filifactor alocis ATCC 35896]
Length = 286
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 149/265 (56%), Gaps = 16/265 (6%)
Query: 103 ATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
T+K + K F KSLGQ++++++ I ++ +A +QE DIV+E+G G G+LT L
Sbjct: 9 VTLKEITKKYGFQFTKSLGQNFLVDTNILQKIVDSADIQEEDIVIEVGTGIGTLTRELAK 68
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V AIE D+ ++ +V+E ++ + + + DF++ + ++ +R+ KV
Sbjct: 69 RAKKVYAIEIDKKLIPIVKETTSNYNNIDFVNMDFLEV-VLEDLIQEKDRK------IKV 121
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+ANIP+ I+T +I + L S ++L++Q+E A RL EPS T Y +++ V +YS
Sbjct: 122 IANIPYYITTPIIMKCLESSLDISTILLMIQKEVADRLSAEPS--TKAYGSLSVAVQYYS 179
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
+ E+ KV ++ F+PQPKVD+ +V KL + +Y V K F +V SAF +RK +
Sbjct: 180 DVEFVGKVSKSCFYPQPKVDSGIV--KLSKKHEYIFVRDRKLFSQVVKSAFAKRRKTISN 237
Query: 341 SLQHLC---TSLEIEKALGDVGLPA 362
S+ C T + KAL G A
Sbjct: 238 SMIGFCEQFTKDNVMKALEKSGTDA 262
>gi|168187487|ref|ZP_02622122.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
gi|169294621|gb|EDS76754.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
Length = 281
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 18/249 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL V AIE D ++
Sbjct: 19 KSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLKKAKRVCAIELDSDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E K++ +D +K F KVVAN+P+ ++T +I +
Sbjct: 79 PILTEELKDFPNFKLIHKDALKVD--------FNEIIGDEKSVKVVANLPYYVTTPIIAR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ EP+ + EY ++I V +Y + E KVP T F P
Sbjct: 131 LLKEGYKFKSLTIMIQKEVAERIASEPNCK--EYGALSILVQYYCDTEILRKVPPTCFIP 188
Query: 296 QPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRKMLRKSLQHL--CTSLEI 351
QPKVD+ ++ D P V + FF +V +FN +RK LR +++ L + I
Sbjct: 189 QPKVDSIIIKL---DRLDEPRVKVKDKELFFKIVRQSFNMRRKTLRNAIKSLGDVSGENI 245
Query: 352 EKALGDVGL 360
EK D G+
Sbjct: 246 EKVFNDAGI 254
>gi|331701953|ref|YP_004398912.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
buchneri NRRL B-30929]
gi|329129296|gb|AEB73849.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
buchneri NRRL B-30929]
Length = 296
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 136/233 (58%), Gaps = 12/233 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + D + AAA + + D V+EIGPG G LT L A V+A E D ++
Sbjct: 25 KKSLGQNFLVDLGVLDNIVAAAKITKADNVIEIGPGIGGLTEQLAKAANKVVAFEIDANL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++++ +D +K ++ + +F+ K KVVAN+P+ I+T ++
Sbjct: 85 LPVLDETLAPYDNIEIINQDILKANLPKIIDDVFDTEKP----LKVVANLPYYITTPIVM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ F +V+++Q+E A RL EPS T Y +++ V ++ E F VP+T F
Sbjct: 141 DLITGETQFDAIVVMMQKEVAERLNAEPS--TKPYGSLSVIVQELNQVEISFVVPKTAFI 198
Query: 295 PQPKVDAAVV--TFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQPKVD+A+V T ++K+A + K+F S V F +RK L +LQ +
Sbjct: 199 PQPKVDSAIVKLTPRVKRAVEP---FDQKAFISFVRGCFMHQRKTLWNNLQGI 248
>gi|169830264|ref|YP_001716246.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator
MP104C]
gi|169637108|gb|ACA58614.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator
MP104C]
Length = 299
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 142/250 (56%), Gaps = 13/250 (5%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+ L G PRKSLGQ++++ + + D++ AA V++ ++V+EIGPG G+LT L GA
Sbjct: 17 RLLAEYGLKPRKSLGQNFLVAAGVLDKILEAAEVEKDEVVIEIGPGVGALTRRLAEKGAR 76
Query: 166 VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V A+E D ++ L++E + D+++++ D +K + + + +G KVVAN
Sbjct: 77 VAAVEIDGRLIPLLKEVLGDLGDRVRLINADALKVDYGALLAEM------GAGSFKVVAN 130
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
+P+ I++ + L G F +VL++Q+E A R+ + T Y +++ V +++E +
Sbjct: 131 LPYYITSPFVAGFLEAGYRFERMVLMVQKEVADRMTAAN-GTESYGALSVLVAYHTEADV 189
Query: 285 KFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSL 342
++V R F+P P VD+AVV + A PAVT + FF +V ++F +RKML +L
Sbjct: 190 VWRVSRHCFYPPPAVDSAVVRLMRRPA---PAVTVLQPELFFRIVRASFGRRRKMLPNAL 246
Query: 343 QHLCTSLEIE 352
L+ E
Sbjct: 247 AGAVPGLDRE 256
>gi|406027425|ref|YP_006726257.1| dimethyladenosine transferase [Lactobacillus buchneri CD034]
gi|405125914|gb|AFS00675.1| dimethyladenosine transferase [Lactobacillus buchneri CD034]
Length = 296
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 136/233 (58%), Gaps = 12/233 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + D + AAA + + D V+EIGPG G LT L A V+A E D ++
Sbjct: 25 KKSLGQNFLVDLGVLDNIVAAAKITKADNVIEIGPGIGGLTEQLAKAANKVVAFEIDANL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++++ +D +K ++ + +F+ K KVVAN+P+ I+T ++
Sbjct: 85 LPVLDETLAPYDNIEIINQDILKANLPKIIDDVFDTEKP----LKVVANLPYYITTPIVM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ F +V+++Q+E A RL EPS T Y +++ V ++ E F VP+T F
Sbjct: 141 DLITGETQFDAIVVMMQKEVAERLNAEPS--TKPYGSLSVIVQELNQVEISFVVPKTAFI 198
Query: 295 PQPKVDAAVV--TFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQPKVD+A+V T ++K+A + K+F S V F +RK L +LQ +
Sbjct: 199 PQPKVDSAIVKLTPRVKRAVEP---FDQKAFISFVRGCFMHQRKTLWNNLQGI 248
>gi|158321677|ref|YP_001514184.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
gi|166987688|sp|A8MK56.1|RSMA_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|158141876|gb|ABW20188.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
Length = 287
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 145/268 (54%), Gaps = 13/268 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I D + A V EGD ++E+GPG GSLT + +VLA+E D+ ++
Sbjct: 23 KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++V+ ED +K + + F R KV+AN+P+ ++T +I +
Sbjct: 83 PILKETLGAYPNVEVINEDVLKLDLHKLIEEKFPGRN-----VKVIANLPYYVTTPIIMK 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L + +++Q+E A R+ + T +Y ++I V +YS P+ KVP + F PQ
Sbjct: 138 FLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYSNPKILLKVPPSVFIPQ 196
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKV++ V+ + D P V+ + FFS+V AF +RK L +L L++EK+
Sbjct: 197 PKVESTVIRLDI---LDTPKVSVEREDLFFSLVKDAFGKRRKTLLNALS--TGDLKLEKS 251
Query: 355 LGDVGLPATAAADYKFPITLPSTEYTLF 382
L L A+ + + TL EY +
Sbjct: 252 LLREVLAASNIDENRRGETLTIEEYGVL 279
>gi|323340527|ref|ZP_08080782.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644]
gi|417972535|ref|ZP_12613433.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus ruminis ATCC 25644]
gi|323092071|gb|EFZ34688.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644]
gi|346331108|gb|EGX99329.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus ruminis ATCC 25644]
Length = 296
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 143/256 (55%), Gaps = 24/256 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I ++ AAA V E D V+EIGPG G+LT L + V+A+E D +
Sbjct: 26 KKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGPGIGALTEQLAKSAHQVMALEIDSRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + D +K++++D +K ++ + F+ R K+VAN+P+ I+T ++
Sbjct: 86 IPVLSETLSPYDNVKIVEQDVLKADLKELIAQNFDGRHK----IKLVANLPYYITTPIVM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + F +V+++Q+E A RL +P T +Y +++ V + + + F VP+T F
Sbjct: 142 HLLEVDVDFETIVVMMQKEVADRLAAQPG--TKDYGSLSVAVQYEMDAKIAFIVPKTVFM 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFF-SMVSSAFNGKRKML--------------R 339
PQPKVD+A++ L + + P V + FF MV F +RK L R
Sbjct: 200 PQPKVDSAIIA--LNRKDEKPDVPVDEPFFKKMVKGIFLHRRKSLWNNLQGLYGKDPSTR 257
Query: 340 KSLQHLCTSLEIEKAL 355
+ L+H + EIEK++
Sbjct: 258 EKLEHALKNAEIEKSV 273
>gi|452995111|emb|CCQ93252.1| dimethyladenosine 16S ribosomal RNA transferase [Clostridium
ultunense Esp]
Length = 289
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 147/272 (54%), Gaps = 19/272 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I ++ + + D VLEIGPG G+LT L V+A+E D+ ++
Sbjct: 25 KSLGQNFLIDGNIVRKIGQEGNITKEDYVLEIGPGIGTLTEELALNAKKVVAVELDKSLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E ++++ D ++ I + K + G KVVAN+P+ ++T +I +
Sbjct: 85 PILDETLRDYPNIEIIHGDILRVDINRLI-----EEKMAGGPIKVVANLPYYVTTPIIAK 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L+ +++++Q+E A R+V S + +Y +++FV FY++PE VP+T F PQ
Sbjct: 140 LIEEDLNIESIIIMIQKEVAHRIVA-SPGSKQYGSLSVFVKFYTQPEILIPVPKTVFMPQ 198
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL---EIEK 353
PKVD+AV+ +K+ D P + + FF +V +AF+ +RK + SL L EI++
Sbjct: 199 PKVDSAVIRLNIKR--DLPEI-DREIFFQVVKAAFSKRRKTILNSLSSNSWGLDKEEIKE 255
Query: 354 ALGDVGLPATAAAD-------YKFPITLPSTE 378
L +P A+ K TLPS +
Sbjct: 256 VLKGANIPLQERAENLKIEDFIKISKTLPSLD 287
>gi|15618967|ref|NP_225253.1| dimethyladenosine transferase [Chlamydophila pneumoniae CWL029]
gi|15836590|ref|NP_301114.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
gi|16753057|ref|NP_445330.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
gi|27151618|sp|Q9Z6K0.1|RSMA_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|4377394|gb|AAD19196.1| Dimethyladenosine Transferase [Chlamydophila pneumoniae CWL029]
gi|7189706|gb|AAF38590.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
gi|8979432|dbj|BAA99266.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
Length = 277
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 144/248 (58%), Gaps = 16/248 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I ++ A + V D VLEIGPG G+LT L+ AGA V+AIEKD
Sbjct: 20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
S+++L + E C L ++ + G +VVAN+P++I+T ++
Sbjct: 80 FA-------PSLEELPIRLEIIDACKYPLDQLQEYK----TLGKGRVVANLPYHITTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L D + V +++Q+E A R+V +P R +Y + IF+ F+++ Y FKV +
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGR--DYGSLTIFLQFFADIHYAFKVSASC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F+P+P+V +AV+ K+K+ + FF++ +AF +RK+L +L+ L ++E
Sbjct: 187 FYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAFQQRRKVLANTLKGLYPKEQVE 245
Query: 353 KALGDVGL 360
+AL ++GL
Sbjct: 246 QALKELGL 253
>gi|428297940|ref|YP_007136246.1| dimethyladenosine transferase [Calothrix sp. PCC 6303]
gi|428234484|gb|AFZ00274.1| dimethyladenosine transferase [Calothrix sp. PCC 6303]
Length = 285
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 150/281 (53%), Gaps = 29/281 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R++L QH++ + + D +A AA E D VLEIGPGTG LT LL ++A+E D ++
Sbjct: 11 RRALAQHWLKSEKALDAIARAAECTECDRVLEIGPGTGILTRRLLPLVGALVAVEIDSNL 70
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ + D +LQ DF++ + + +L+ F + + + KVVANIP+NI+ +I+
Sbjct: 71 CKLLVKGLGEKDNFLLLQSDFLEVEL-ATLLAGFPKFQKPN---KVVANIPYNITGPIIE 126
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+LL P + + +VLL+Q+E A RLV +P R + I V + +E EY VP
Sbjct: 127 KLLGRISNPNPEPYESIVLLIQKEVAERLVSKPGNRACGA--LTIRVQYLAECEYICTVP 184
Query: 290 RTNFFPQPKVDAAVVTF---KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
F P PKVD+AVV KL++ D P K ++V F KRKMLR +LQ +
Sbjct: 185 AKAFHPAPKVDSAVVKLTPRKLEKVADDP-----KWLETLVKLGFAAKRKMLRNNLQSVV 239
Query: 347 TSLEIEKALGDVGL-PATAAADYKFP--------ITLPSTE 378
+ + + +G+ P A D +++PSTE
Sbjct: 240 ERDRMNEIMEQLGMNPQDRAEDLSVQQWVKLSNHLSIPSTE 280
>gi|411117788|ref|ZP_11390169.1| dimethyladenosine transferase [Oscillatoriales cyanobacterium
JSC-12]
gi|410711512|gb|EKQ69018.1| dimethyladenosine transferase [Oscillatoriales cyanobacterium
JSC-12]
Length = 276
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 147/267 (55%), Gaps = 21/267 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEG--------DIVLEIGPGTGSLTNVLLNAGATV 166
PRK GQH++ + + +Q+ AAA +++G D VLEIGPG G LT +LL+ V
Sbjct: 4 PRKQFGQHWLRSDKALNQIMAAAELKKGNAEGGSRGDRVLEIGPGKGVLTRLLLDHADAV 63
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D+ + + ++ ID +LQ DF+ + +L+ F ++ + KVVANIP
Sbjct: 64 VAVEIDRDLCEFLVKKLGVIDHFLLLQGDFLSLDL-VQLLAPFPNFQNPN---KVVANIP 119
Query: 227 FNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSE 281
+NI+ ++++LL P F +VLL+Q E ALRL + + +S + +++ V + +
Sbjct: 120 YNITGPILEKLLGTIAQPNPHPFDSIVLLVQREVALRL-KANPGSSHFGALSVRVQYLAH 178
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
++ VP F+P PKVD+AV+ + + D PA K +++ F KRKMLR +
Sbjct: 179 CDFICDVPAKAFYPPPKVDSAVIRLR-PRPIDSPA-NDPKKLETLLKLGFGSKRKMLRNN 236
Query: 342 LQHLCTSLEIEKALGDVGL-PATAAAD 367
LQ + + + L +G+ P A D
Sbjct: 237 LQGIISRETLSNLLETMGINPQVRAED 263
>gi|452972522|gb|EME72352.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sonorensis L12]
Length = 292
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 147/262 (56%), Gaps = 17/262 (6%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + LN G +KSLGQ++++++ I D++ A V E V+EIGPG G+LT L
Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTERTGVIEIGPGIGALTEQLAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + + D + V+ +D +K I++ M F+ VVA
Sbjct: 71 KKVVAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADIKAVMDEQFQ----GCDEVMVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+E
Sbjct: 127 NLPYYVTTPIIMKLLEEHLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEA 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRK 340
+ VP+T F PQP VD+AV+ L++A PAVT FF +V ++F +RK L
Sbjct: 185 KTVMVVPKTVFVPQPNVDSAVIRLTLREA---PAVTVKDEAFFFQVVKASFAQRRKTLLN 241
Query: 341 SLQHLCTS-----LEIEKALGD 357
+L + + EIEKAL D
Sbjct: 242 NLVNNLATGKEKKAEIEKALQD 263
>gi|383753330|ref|YP_005432233.1| putative ribosomal RNA small subunit methyltransferase A
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365382|dbj|BAL82210.1| putative ribosomal RNA small subunit methyltransferase A
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 287
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 131/228 (57%), Gaps = 13/228 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ I + AA ++EGD VLEIGPG G+LT L AGA V A+E D+ +
Sbjct: 29 KKLGQNFLIDASIVQGIVDAAEIEEGDRVLEIGPGIGTLTQGLAEAGADVTAVELDKKLP 88
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D ++++ D +K +I M F KV AN+P+ I+T ++
Sbjct: 89 AVLAETLKGYDNVRIVPGDILKVNIPEIM--------GDKPF-KVAANLPYYITTPILMA 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + +V ++Q+E ALR+V +P + +Y +++ V +Y+EPE VP +F P
Sbjct: 140 LLERHLPITHMVTMVQKEVALRMVAKPGGK--DYGALSVAVQYYTEPEIVLDVPPRSFIP 197
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P+VD+ V+ K+++ T V K FF +V +AF +RK L +L+
Sbjct: 198 APEVDSVVIACKVRE-TPAVQVQDEKMFFRVVKAAFGQRRKTLSNALK 244
>gi|335998358|ref|ZP_08564270.1| dimethyladenosine transferase [Lactobacillus ruminis SPM0211]
gi|335348872|gb|EGM50373.1| dimethyladenosine transferase [Lactobacillus ruminis SPM0211]
Length = 296
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 146/259 (56%), Gaps = 15/259 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I ++ AAA V E D V+EIGPG G+LT L + V+A+E D +
Sbjct: 26 KKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGPGIGALTEQLAKSAHQVMALEIDSRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + D +K++++D +K ++ + F+ R K+VAN+P+ I+T ++
Sbjct: 86 IPVLSETLSPYDNVKIVEQDVLKADLKELIAQNFDGRHK----IKLVANLPYYITTPIVM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + F +V+++Q+E A RL +P T +Y +++ V + + + F VP+T F
Sbjct: 142 HLLDVDVDFETIVVMMQKEVADRLAAQPG--TKDYGSLSVAVQYEMDAKIAFIVPKTVFM 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFF-SMVSSAFNGKRKMLRKSLQHL-----CTS 348
PQPKVD+A++ L + + P V + FF MV F +RK L +LQ L T
Sbjct: 200 PQPKVDSAIIA--LNRKDEKPDVPVDEPFFKKMVKGIFLHRRKSLWNNLQGLYGKDPSTK 257
Query: 349 LEIEKALGDVGLPATAAAD 367
++E AL + + + A+
Sbjct: 258 EKLEHALKNAEIEKSVRAE 276
>gi|118445093|ref|YP_879149.1| dimethyladenosine transferase [Clostridium novyi NT]
gi|118135549|gb|ABK62593.1| dimethyladenosine transferase [Clostridium novyi NT]
Length = 281
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 132/249 (53%), Gaps = 18/249 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL V A+E D ++
Sbjct: 19 KSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLKKAKKVCAVELDSELI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E +++ +D +K L KS KVVAN+P+ ++T +I +
Sbjct: 79 PILTEELKDFPNFELIHKDALKVDFN----ELIGEEKS----VKVVANLPYYVTTPIIAR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ EP+ + EY ++I V +Y + E KVP T F P
Sbjct: 131 LLKEGYKFKSLTIMIQKEVAERIASEPNCK--EYGALSILVQYYCDTEILRKVPPTCFIP 188
Query: 296 QPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRKMLRKSLQHL--CTSLEI 351
QPKVD+ ++ D P V + FF +V +FN +RK LR +++ L + I
Sbjct: 189 QPKVDSIIIKL---DRLDEPRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGDVSGDHI 245
Query: 352 EKALGDVGL 360
EK D G+
Sbjct: 246 EKVFNDAGI 254
>gi|164688862|ref|ZP_02212890.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM
16795]
gi|164602066|gb|EDQ95531.1| dimethyladenosine transferase [Clostridium bartlettii DSM 16795]
Length = 288
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 144/258 (55%), Gaps = 12/258 (4%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + +K F KSLGQ+++++ + D++ A + E D ++E+GPG G+LT +
Sbjct: 7 HRATKEVVNKHNFKFSKSLGQNFLIDDNVIDRILEGARLSETDRIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D+ ++ +++E A +D ++V+ ED +K ++ + K + G K
Sbjct: 67 KVAENVVAIEIDKTLIPILKETLADLDNVEVVNEDILKVDVQGLI-----NEKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ +PS T +Y +++ V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAKPS--TKDYGALSVAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ E K PR F PQP VD+ V+ ++ Y V + FF V ++F +RK L
Sbjct: 180 CDTEIVAKAPRHMFVPQPNVDSIVIGLHVRDEKKY-VVDNEDIFFKTVKASFGQRRKTLL 238
Query: 340 KSLQHL--CTSLEIEKAL 355
SL L + EI +AL
Sbjct: 239 NSLGGLGFLSKDEIREAL 256
>gi|291533505|emb|CBL06618.1| dimethyladenosine transferase [Megamonas hypermegale ART12/1]
Length = 287
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 137/251 (54%), Gaps = 18/251 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ I + AA VQE D VLEIGPG G+LT L GA V +E D+ +
Sbjct: 25 KRLGQNFLIDANIVQGIVDAANVQENDRVLEIGPGIGTLTQALAETGAEVTCVELDKRLP 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++V+Q D +K +I M F KVVAN+P+ I+T +I
Sbjct: 85 EVLAHTLDAYDNVRVIQGDILKVNIPEIM--------GDKPF-KVVANLPYYITTPIIMA 135
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +++V+++Q+E A R+ +P +T Y +++ V +Y+ PE VP +F P
Sbjct: 136 LLEKHLPITDIVVMVQKEVAERMAAQPGGKT--YGALSVAVQYYTVPEIALYVPPRSFMP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IE 352
P+VD+ VV K++Q PAV K FF +V +AF +RK L +L+ + I
Sbjct: 194 PPEVDSVVVNCKVRQT---PAVELIDEKMFFRVVKAAFGQRRKTLNNALKSMGVDKNIIA 250
Query: 353 KALGDVGLPAT 363
L G+ AT
Sbjct: 251 DVLDKAGIEAT 261
>gi|375086372|ref|ZP_09732784.1| dimethyladenosine transferase [Megamonas funiformis YIT 11815]
gi|374565409|gb|EHR36678.1| dimethyladenosine transferase [Megamonas funiformis YIT 11815]
Length = 287
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 137/251 (54%), Gaps = 18/251 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ I + AA VQE D VLEIGPG G+LT L GA V +E D+ +
Sbjct: 25 KRLGQNFLIDANIVQGIVDAANVQENDRVLEIGPGIGTLTQALAETGAEVTCVELDKRLP 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++V+Q D +K +I M F KVVAN+P+ I+T +I
Sbjct: 85 EVLAHTLDAYDNVRVIQGDILKVNIPEIM--------GDKPF-KVVANLPYYITTPIIMA 135
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +++V+++Q+E A R+ +P +T Y +++ V +Y+ PE VP +F P
Sbjct: 136 LLEKHLPITDIVVMVQKEVAERMAAQPGGKT--YGALSVAVQYYTVPEIALYVPPRSFMP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IE 352
P+VD+ VV K++Q PAV K FF +V +AF +RK L +L+ + I
Sbjct: 194 PPEVDSVVVNCKVRQT---PAVELIDEKMFFRVVKAAFGQRRKTLNNALKSMGVDKNIIA 250
Query: 353 KALGDVGLPAT 363
L G+ AT
Sbjct: 251 DVLDKAGIEAT 261
>gi|350566342|ref|ZP_08935024.1| dimethyladenosine transferase [Peptoniphilus indolicus ATCC 29427]
gi|348662873|gb|EGY79504.1| dimethyladenosine transferase [Peptoniphilus indolicus ATCC 29427]
Length = 280
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 139/242 (57%), Gaps = 15/242 (6%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
H ++ L+ G KSLGQ+++++ I ++ A V EG VLEIGPG G+LT L
Sbjct: 8 HRVVEILDRYGFKFSKSLGQNFLIDGNIVRKIVDVAEV-EGKNVLEIGPGLGTLTEELAM 66
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
VLAIE D+ ++ V E +D +KV+ +DF+K L + E F V
Sbjct: 67 RAKKVLAIEIDKKLIP-VHEETLKLDNVKVIYDDFLKLD-----LKILEEEFEGESFV-V 119
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
V+N+P+ ++T ++ +++ S + +++Q+E A R +PS T +Y +++FV FYS
Sbjct: 120 VSNLPYYVTTPILTRIIEQTRAES-ITVMVQKEVARRFSAKPS--TKDYGSLSVFVQFYS 176
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
+ +Y+F VP T F P+P+VD+ VV FKLK D AV + F +V ++F+ +RK +
Sbjct: 177 DVKYEFDVPSTVFMPRPRVDSGVVRFKLK---DDLAVVDREKLFKIVKASFSKRRKTIIN 233
Query: 341 SL 342
SL
Sbjct: 234 SL 235
>gi|33242431|ref|NP_877372.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
gi|33236942|gb|AAP99029.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
Length = 277
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 144/248 (58%), Gaps = 16/248 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I ++ A + V D VLEIGPG G+LT L+ AGA V+AIEKD
Sbjct: 20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
S+++L + E C L + ++ G +VVAN+P++I+T ++
Sbjct: 80 FA-------PSLEELPIRLEIIDACKYPLDQLQEY----TTLGKGRVVANLPYHITTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L D + V +++Q+E A R+V +P + +Y + IF+ F+++ Y FKV +
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGK--DYGSLTIFLQFFADIHYAFKVSASC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F+P+P+V +AV+ K+K+ + FF++ +AF +RK+L +L+ L ++E
Sbjct: 187 FYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAFQQRRKVLANTLKGLYPKEQVE 245
Query: 353 KALGDVGL 360
+AL ++GL
Sbjct: 246 QALKELGL 253
>gi|307243374|ref|ZP_07525533.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
17678]
gi|306493244|gb|EFM65238.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
17678]
Length = 292
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 145/263 (55%), Gaps = 11/263 (4%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
+ AT+ + G KSLGQ+++++ I D++ A A + GD ++E+GPG G+LT +
Sbjct: 8 HSATMDLVKKHGFKFTKSLGQNFLIDDNIVDKIVAGAGIGPGDKIIEVGPGIGTLTREMA 67
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
+ ++A+E D++++ ++ + D +K++ ED +K IR + G K
Sbjct: 68 SRAEALMAVEIDKNLIPILADTLGDYDNVKIVNEDIIKADIRGLI-----DENLGGGPVK 122
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T +I + L +++V+++Q+E A R+ +P ++ +++ V +Y
Sbjct: 123 LVANLPYYITTPIIMRFLEENINVTDIVVMVQKEVAERMNAQPG--GKDFGALSVAVQYY 180
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ E KVPR F PQP VD+ V+ +++ Y V +F +V +AF +RK L
Sbjct: 181 CDTEIVAKVPRHLFVPQPNVDSIVIALRVRPERKY-KVDDEDLYFKVVKAAFGQRRKTLL 239
Query: 340 KSLQHL--CTSLEIEKALGDVGL 360
S+ + ++++AL + G+
Sbjct: 240 NSISSMGNLAKDQVKEALEEAGI 262
>gi|384449758|ref|YP_005662360.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN]
gi|269302858|gb|ACZ32958.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN]
Length = 277
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 143/248 (57%), Gaps = 16/248 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I ++ A + V D VLEIGPG G+LT L+ AGA V+AIEKD
Sbjct: 20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
S+++L + E C L ++ + G +VVAN+P++I+T ++
Sbjct: 80 FA-------PSLEELPIRLEIIDACKYPLDQLQEYK----TLGKGRVVANLPYHITTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L D + V +++Q+E A R+V +P +Y + IF+ F+++ Y FKV +
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPG--GKDYGSLTIFLQFFADIHYAFKVSASC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F+P+P+V +AV+ K+K+ + FF++ +AF +RK+L +L+ L ++E
Sbjct: 187 FYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAFQQRRKVLANTLKGLYPKEQVE 245
Query: 353 KALGDVGL 360
+AL ++GL
Sbjct: 246 QALKELGL 253
>gi|52078537|ref|YP_077328.1| dimethyladenosine transferase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319648566|ref|ZP_08002780.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
gi|404487407|ref|YP_006711513.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423680435|ref|ZP_17655274.1| dimethyladenosine transferase [Bacillus licheniformis WX-02]
gi|62900505|sp|Q65PH9.1|RSMA_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|52001748|gb|AAU21690.1| dimethyladenosine transferase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52346401|gb|AAU39035.1| dimethyladenosine transferase RsmA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317389333|gb|EFV70146.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
gi|383441541|gb|EID49250.1| dimethyladenosine transferase [Bacillus licheniformis WX-02]
Length = 292
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 145/262 (55%), Gaps = 17/262 (6%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + LN G +KSLGQ++++++ I D++ A V E V+EIGPG G+LT L
Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A E DQ ++ ++ + + D + V+ +D +K +R+ M F+ VVA
Sbjct: 71 KKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+E
Sbjct: 127 NLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEA 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRK 340
+ VP+T F PQP VD+AV+ L++ PAV + FF +V ++F +RK L
Sbjct: 185 KTVMNVPKTVFVPQPNVDSAVIRLTLRKE---PAVAVQDAAFFFQVVKASFAQRRKTLFN 241
Query: 341 SL-QHLCTSLE----IEKALGD 357
+L +L E IE+AL D
Sbjct: 242 NLVNNLPNGKENKSKIERALQD 263
>gi|434403927|ref|YP_007146812.1| dimethyladenosine transferase [Cylindrospermum stagnale PCC 7417]
gi|428258182|gb|AFZ24132.1| dimethyladenosine transferase [Cylindrospermum stagnale PCC 7417]
Length = 271
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 133/235 (56%), Gaps = 14/235 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA + D VLEIGPGTG LT LL A +++A+E D
Sbjct: 4 PRKQFAQHWLKSEKALDAIIKAAECTKDDGVLEIGPGTGILTRRLLPAVKSLVAVEIDYD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + SH+ + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLAKQLGKTENFLLLQGDFLTLDLASHLAAFPNFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + +VLL+Q+E A RL P R+ + +++ V + ++ E+ V
Sbjct: 120 EKLLGTIANPNPEPYDSIVLLVQKEVAERLYANPGSRS--FGALSVRVQYLAKCEFICTV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P + F P PKVD+AVV + Q + PA K F ++V F KRKMLR +LQ
Sbjct: 178 PASAFQPPPKVDSAVVRLR-PQTIEIPA-HDPKKFENLVKLGFGAKRKMLRNNLQ 230
>gi|220933005|ref|YP_002509913.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
gi|254807869|sp|B8D0I2.1|RSMA_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|219994315|gb|ACL70918.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
Length = 301
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ I D++ A + DIV+EIGPG GSLT ++ V A EKD+ +V
Sbjct: 24 KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++RE F + L+V+ +D ++ + F+ R S KV+AN+P+ I+T VI
Sbjct: 84 KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMG 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
LL FS +VL++Q+E A R+ + + +Y +++ V +Y E E KVP T F P+
Sbjct: 140 LLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYYGEVEIFHKVPPTVFIPR 198
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
P+V ++++ K Y V + FF MV + F +RK L+ SL + ++++K +
Sbjct: 199 PRVYSSIIKIKPHSEPVY-RVKNEGFFFKMVRAIFQQRRKTLKNSLTK-SSEIKLDKGI 255
>gi|331270584|ref|YP_004397076.1| dimethyladenosine transferase [Clostridium botulinum BKT015925]
gi|329127134|gb|AEB77079.1| dimethyladenosine transferase [Clostridium botulinum BKT015925]
Length = 281
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 137/248 (55%), Gaps = 16/248 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL V A+E D +++
Sbjct: 19 KSLGQNFLTDQTVLDDIVDGSEVCEEDFVIEIGPGVGTLTKELLKKAKKVCAVELDSNLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E D +++ +D +K + L KS KVVAN+P+ ++T +I +
Sbjct: 79 PILQEELKEFDNFQLIHKDALKIDFK----ELIGDEKS----VKVVANLPYYVTTPIIAR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ +P+ + EY ++I V +Y + KVP T F P
Sbjct: 131 LLKEGYKFKSLTIMIQKEVAERIASQPNCK--EYGALSILVQYYCDTRIIRKVPPTCFIP 188
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHL--CTSLEIE 352
QPKVD+ ++ +L + + V + FF +V +FN +RK LR +++ L +S IE
Sbjct: 189 QPKVDSIII--RLDRLNELRVKVKDEELFFKIVRQSFNMRRKTLRNAIKSLGFVSSDNIE 246
Query: 353 KALGDVGL 360
K D +
Sbjct: 247 KVFNDADI 254
>gi|299143369|ref|ZP_07036449.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298517854|gb|EFI41593.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 288
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 152/282 (53%), Gaps = 20/282 (7%)
Query: 105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
I+ LN G KSLGQ+++++ I ++ +A + D VLEIGPG G+LT L
Sbjct: 11 IELLNKYGFRFSKSLGQNFLIDGNIVRKIVDSAEISSNDNVLEIGPGVGTLTEELCLRAK 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V++IE D H+ L++E + +K++ D +K ++ F ++ KVVAN
Sbjct: 71 KVVSIEIDNHLKELLKESLP-YENVKIIFNDVLKTDLKK-----FTEQEFGGETFKVVAN 124
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPE 283
+P+ ++T +I +L+ + +++Q+E A R PS T +Y +++F+ FYS+ +
Sbjct: 125 LPYYVTTPIISKLIEEDLNIESITVMIQKEVANRFSASPS--TKDYGSLSVFIQFYSDVK 182
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
Y+F VP+ F P+P VD+AVV K+K+ D P + K F +V +AF+ +RK L +L
Sbjct: 183 YEFTVPKNVFMPKPNVDSAVVNLKIKK--DLPDIDRDK-LFKVVRAAFSKRRKTLINALS 239
Query: 344 HLCTSL---EIEKALGDVGLPATAAADYKFPITLPSTEYTLF 382
++ EI KAL + A+ TL S E+ +
Sbjct: 240 SYGFNIDKNEILKALSISNIDEKRRAE-----TLSSEEFIVL 276
>gi|416355243|ref|ZP_11681793.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum C str. Stockholm]
gi|338195249|gb|EGO87555.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum C str. Stockholm]
Length = 281
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 139/248 (56%), Gaps = 16/248 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL V A+E D +++
Sbjct: 19 KSLGQNFLTDQTVLDDIVIGSEVCEEDFVIEIGPGVGTLTKELLKKAKKVCAVELDSNLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + +++ +D +K + + L KS KVVAN+P+ ++T +I +
Sbjct: 79 PILQEELKEFNNFQLIHKDALKINFK----ELIGDEKS----VKVVANLPYYVTTPIIAR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ EP+ + EY ++I V +Y + KVP T F P
Sbjct: 131 LLKEGYNFKSLTIMIQKEVAERIASEPNCK--EYGALSILVQYYCDTRIIRKVPPTCFIP 188
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL--CTSLEIE 352
QPKVD+ ++ +L + + V + FF +V +FN +RK LR +++ L +S +IE
Sbjct: 189 QPKVDSIII--RLDRLNEPRVKVQDKELFFKIVRQSFNMRRKTLRNAIKSLGFISSDKIE 246
Query: 353 KALGDVGL 360
K D +
Sbjct: 247 KVFNDANI 254
>gi|333977571|ref|YP_004515516.1| ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333821052|gb|AEG13715.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 291
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 129/228 (56%), Gaps = 10/228 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RKSLGQ+++++ + ++ A+ GD+V+EIGPG G+LT L V+AIE D+ +
Sbjct: 22 RKSLGQNFLMDGNMVRKIVKASRFLPGDVVVEIGPGAGTLTAALAGTCFHVVAIELDKRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + + V+ +D +K + + + + KVVAN+P+ I+T +I
Sbjct: 82 LPVLEEVLGGLQNVTVVFKDALKVDFDRLVAEV-----TGATTYKVVANLPYYITTPLIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + + +VL++Q E A RLV P + +Y + V +Y PE F+VPRT FF
Sbjct: 137 HLLRQSGV-TGMVLMIQLEVAERLVAGPG--SKDYGAFTVAVQYYCRPEILFRVPRTVFF 193
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
PQP+VD+AVV +Q + AV FF++V AF +RK L +L
Sbjct: 194 PQPEVDSAVVRLAKRQEPEV-AVDDEDLFFTLVRGAFGQRRKTLANAL 240
>gi|253681083|ref|ZP_04861886.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873]
gi|253562932|gb|EES92378.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873]
Length = 281
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 139/248 (56%), Gaps = 16/248 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL V A+E D +++
Sbjct: 19 KSLGQNFLTDQTVLDDIVIGSEVCEEDFVIEIGPGVGTLTKELLKKAKKVCAVELDSNLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + +++ +D +K + + L KS KVVAN+P+ ++T +I +
Sbjct: 79 PILQEELKEFNNFQLIHKDALKINFK----ELIGDEKS----VKVVANLPYYVTTPIIAR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ EP+ + EY ++I V +Y + KVP T F P
Sbjct: 131 LLKEGYNFKSLTIMIQKEVAERIASEPNCK--EYGALSILVQYYCDTTIIRKVPPTCFIP 188
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL--CTSLEIE 352
QPKVD+ ++ +L + + V + FF +V +FN +RK LR +++ L +S +IE
Sbjct: 189 QPKVDSIII--RLDRLNEPRVKVQDKELFFKIVRQSFNMRRKTLRNAIKSLGFISSDKIE 246
Query: 353 KALGDVGL 360
K D +
Sbjct: 247 KVFNDANI 254
>gi|423080853|ref|ZP_17069470.1| dimethyladenosine transferase [Clostridium difficile 002-P50-2011]
gi|423087255|ref|ZP_17075644.1| dimethyladenosine transferase [Clostridium difficile 050-P50-2011]
gi|357545193|gb|EHJ27173.1| dimethyladenosine transferase [Clostridium difficile 050-P50-2011]
gi|357552342|gb|EHJ34116.1| dimethyladenosine transferase [Clostridium difficile 002-P50-2011]
Length = 289
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 139/246 (56%), Gaps = 10/246 (4%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
E E K PR F PQP VD+ V+ ++ Y V + + FF V ++F +RK L
Sbjct: 180 CETEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEEIFFKTVKASFGQRRKTLL 238
Query: 340 KSLQHL 345
SL L
Sbjct: 239 NSLGGL 244
>gi|425456205|ref|ZP_18835916.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9807]
gi|389802755|emb|CCI18231.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9807]
Length = 268
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 23/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF+ + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDFLTL-----------KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + LLLQ+E A RLV PS T Y +++ + + ++ ++ V
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLLQKEVAERLVAVPS--TKAYSALSVRIQYLADCQWICDV 171
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
PR F P P+VD+AV+ + +P +F S ++S F +RKMLR +L++
Sbjct: 172 PRRAFSPPPRVDSAVIQLLPRV---FPKNVGNAAFLSTLISWGFANRRKMLRNNLKNCLD 228
Query: 348 SLEIEKALGDVGLPATAAAD 367
S + + L + + A A+
Sbjct: 229 SDRLSQILTQLEINPLARAE 248
>gi|29840068|ref|NP_829174.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
gi|33301245|sp|Q823V2.1|RSMA_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|29834416|gb|AAP05052.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
Length = 278
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 139/238 (58%), Gaps = 19/238 (7%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+GR P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+E
Sbjct: 17 QGR-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALE 75
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
KD + LK L D + LS E K G +VVAN+P++I+
Sbjct: 76 KDPMFE----------ETLKQLPIDLEITDACKYPLSQLE-EKGWQGKGRVVANLPYHIT 124
Query: 231 TDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
T ++ +L L + + + V +++Q+E A R+ +P + EY + IF+ F+++ Y FKV
Sbjct: 125 TPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKV 182
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHL 345
FFP+P+V +AVV +K+ +P TS + FFS+ +AF +RK+L +L+ L
Sbjct: 183 SPGCFFPKPQVSSAVVHMTVKET--FPLETSLHQKFFSLTRAAFGQRRKLLANALKDL 238
>gi|117925614|ref|YP_866231.1| dimethyladenosine transferase [Magnetococcus marinus MC-1]
gi|171460784|sp|A0LA32.1|RSMA_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|117609370|gb|ABK44825.1| dimethyladenosine transferase [Magnetococcus marinus MC-1]
Length = 279
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 11/240 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G P K GQ+++++ + ++ A A ++ GD VLEIGPG GSLT LL V
Sbjct: 11 LEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQKAGAVT 70
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+EKD+ ++ L+R A + L +++ED + ++ + G K+ AN+P+
Sbjct: 71 AVEKDRKLLPLLRVEAAGVGALTLVEEDAL-------LVDYTALAQQLGGPLKLAANLPY 123
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
NIST ++ LL F + L+ Q+E A RL EP + Y + + ++E + F
Sbjct: 124 NISTPLMVHLLDHHAAFECMALMFQKEVAQRLAAEPG--SKAYGALTVQCALWAEIRHGF 181
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
VP F P PKV +AVV ++ + AV + F +V +AF +RK LR +L+ +C
Sbjct: 182 DVPPAAFLPAPKVTSAVVHVQMMRQPRV-AVEDERHFVRVVKAAFAQRRKTLRNTLKTIC 240
>gi|339625306|ref|ZP_08661095.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Fructobacillus fructosus KCTC 3544]
Length = 295
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + I + AA + + D+V+EIGPG G LT L A VL
Sbjct: 17 LNQYGLRAKKKFGQNFLTDGNILSGIVQAADLTKEDLVVEIGPGIGGLTEYLARAAKKVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ E A D ++++++D ++ +++ + F + + KVVAN+P+
Sbjct: 77 AFEIDPDMVKILAETLAPYDNVQIVEQDVLEADLKTVLAESFGEKSA----VKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T ++ LL G + ++V+++Q+E A RL +P T EY + + +++Y+
Sbjct: 133 YITTPILLALLQAGIHWEKLVVMMQKEVADRLSAKPG--TKEYGVLTVMLDYYASVAIAL 190
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQA---TDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
KVP F P P VD+AVVT K A D+P K FS+V + F +RK L +L
Sbjct: 191 KVPAKAFNPSPNVDSAVVTLTPKPAEKPVDHP-----KQLFSLVKACFAHRRKSLWNNL 244
>gi|443668518|ref|ZP_21134201.1| dimethyladenosine transferase [Microcystis aeruginosa DIANCHI905]
gi|159030325|emb|CAO91220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330807|gb|ELS45499.1| dimethyladenosine transferase [Microcystis aeruginosa DIANCHI905]
Length = 268
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 23/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF+ + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDFLTL-----------KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + LLLQ+E A RLV PS T Y +++ + + ++ ++ V
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLLQKEVAERLVAVPS--TKAYSALSVRIQYLADCQWICDV 171
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
PR F P P+VD+AV+ + +P +F S ++S F +RKMLR +L++
Sbjct: 172 PRRAFSPPPRVDSAVIQILPRV---FPKNVGNAAFLSTLISWGFANRRKMLRNNLKNCLD 228
Query: 348 SLEIEKALGDVGLPATAAAD 367
S + + L + + A A+
Sbjct: 229 SDRLSQILTQLEINPLARAE 248
>gi|336392333|ref|ZP_08573732.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus coryniformis subsp. torquens KCTC 3535]
Length = 296
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 132/232 (56%), Gaps = 10/232 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I Q+A+AA + D VLEIGPG GSLT L VLA+E DQ +
Sbjct: 26 KKSLGQNFLTEPTILRQIASAAELTTADDVLEIGPGIGSLTEQLAQNAHQVLALEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D + VL +D +K + + + F+ + KVVAN+P+ I+T ++
Sbjct: 86 LPILADTLAPYDNVTVLNQDVLKSDLATLIRDHFDGQHK----VKVVANLPYYITTPILL 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL G F ++V+++Q+E A RL +P + Y +++ V + + F VP+T F
Sbjct: 142 RLLESGVTFDQIVVMMQKEVAERLAADPG--SKAYGSLSVAVQYQMTVKLAFIVPKTVFV 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A+V+ L + PAV T K F +V +F +RK L +L L
Sbjct: 200 PQPNVDSAIVS--LTRHVTPPAVATDEKVFARLVRGSFAQRRKSLWNNLTAL 249
>gi|440755385|ref|ZP_20934587.1| dimethyladenosine transferase [Microcystis aeruginosa TAIHU98]
gi|440175591|gb|ELP54960.1| dimethyladenosine transferase [Microcystis aeruginosa TAIHU98]
Length = 268
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 141/260 (54%), Gaps = 23/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + LL+Q+E A RLV PS T Y +++ + + ++ ++ V
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLADCQWICDV 171
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
PR F P P+VD+AV+ + P S +F S +VS F +RKMLR +L++
Sbjct: 172 PRRAFSPPPRVDSAVIQLLPRV---LPNNVSNAAFLSTLVSLGFANRRKMLRNNLKNCLD 228
Query: 348 SLEIEKALGDVGLPATAAAD 367
S ++ + L + + A A+
Sbjct: 229 SDQLSQILTQLEINPLARAE 248
>gi|427723175|ref|YP_007070452.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 7376]
gi|427354895|gb|AFY37618.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 7376]
Length = 272
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 133/235 (56%), Gaps = 12/235 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I DQ+ AAA +Q+GD +LEIGPG G+LT LL +L++E D+ +
Sbjct: 4 RKQFGQHWLTDDSILDQIVAAADLQQGDRLLEIGPGKGALTRRLLPNAEALLSVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ + + D +L+ D++K +I L+ F + ++ KVVANIP+NI+ +I+
Sbjct: 64 CKYMVQNYGDRDNFLLLEADYLKSNI-DEFLNDFPKFQNPR---KVVANIPYNITGPIIE 119
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
+LL P + F +VLL+Q+E RL+ T + + + V + +E E VP
Sbjct: 120 KLLGRIANPNPNPFESIVLLIQKEVGDRLIAVP-HTRAFGALTLRVQYLAECETICLVPP 178
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
+F P+PKVD+ VV K + PA + K +++ F KRKMLR +L+ L
Sbjct: 179 KSFRPKPKVDSVVVRLK-PRPLGKPA-QNPKLLETLIKVGFMSKRKMLRNNLKGL 231
>gi|225575697|ref|ZP_03784307.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM
10507]
gi|225037077|gb|EEG47323.1| dimethyladenosine transferase [Blautia hydrogenotrophica DSM 10507]
Length = 294
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 143/266 (53%), Gaps = 13/266 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI+ L +K GQ++++++ + D++ A+ +Q+ D VLEIGPG G++T L
Sbjct: 8 DPKNTIEILKKYDFVFQKRFGQNFLIDTHVLDKIIRASDIQKSDFVLEIGPGIGTMTQYL 67
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+A V+A+E D+ ++ ++++ +S + V+ ED +K IR + E R
Sbjct: 68 ADAAREVVAVEIDKSLIPILKDTLSSYSNVTVINEDVLKVDIR----KIAEERNEGKPI- 122
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +
Sbjct: 123 KVVANLPYYITTPIIMGLFEKKVPIESITIMVQKEVADRMKVGPG--TKDYGALSLAVQY 180
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y+EP+ VP F P+PKV +AV+ L+ V F+M+ ++FN +RK L
Sbjct: 181 YAEPKMIANVPSNCFMPRPKVGSAVIQL-LRHEKPPVEVDDESQMFAMIRASFNQRRKTL 239
Query: 339 RKSLQHL----CTSLEIEKALGDVGL 360
L++ EIE+AL GL
Sbjct: 240 VNGLKNSRELNLQKEEIEEALTACGL 265
>gi|425471346|ref|ZP_18850206.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9701]
gi|389882782|emb|CCI36782.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9701]
Length = 268
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 23/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF+ + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDFLSLKL-----------EQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + LL+Q+E A RLV PS T Y +++ + + ++ ++ V
Sbjct: 114 EKLLGSIAHPFTPPYHSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLADCQWICDV 171
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
PR F P P+VD+AV+ + P S +F S ++S F +RKMLR +L++
Sbjct: 172 PRRAFSPSPRVDSAVIQLLPRV---LPNNVSNPAFLSTLISWGFANRRKMLRNNLKNCLD 228
Query: 348 SLEIEKALGDVGLPATAAAD 367
S + + L + + A A+
Sbjct: 229 SDRLSQILTQLEINPLARAE 248
>gi|300814328|ref|ZP_07094600.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300511595|gb|EFK38823.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 288
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 139/239 (58%), Gaps = 12/239 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ I ++ +A V E D VLEIGPG G+LT L V++IE D+ +
Sbjct: 23 KTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLTEELALRAKKVVSIEIDKRLK 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
L+ E D +K++ +DF+K ++ +L + F KVVAN+P+ I+T +I++
Sbjct: 83 DLLEETLPY-DNVKIIYKDFLKLDLK----TLIDEEFKGQNF-KVVANLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + + +++Q+E A R +P +T +Y +++F+ F+ + Y+F VPRT F P
Sbjct: 137 LLLNSENIEIINVMIQKEVAKRFTAQP--QTKDYGSLSVFIQFFCKAFYEFTVPRTVFMP 194
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
+P VD+ V ++K+ D P + + FF +V +AF+ +RK L SL +L+ K
Sbjct: 195 KPNVDSGVCKLEVKR--DLPNI-DREEFFKIVRAAFSKRRKTLVNSLSQSQLNLDKNKV 250
>gi|425440265|ref|ZP_18820571.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9717]
gi|389719341|emb|CCH96809.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9717]
Length = 268
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 139/260 (53%), Gaps = 23/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ +AA +Q D VLEIGPGTG LT LL+ V+A+E D++
Sbjct: 5 PRKRFGQHWLKDESILDRIISAADLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRY 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF+ + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDFLTL-----------KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + LL+Q+E A RLV PS T Y +++ + + ++ + V
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLADCRWICDV 171
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
PR F P P+VD+AV+ + +P +F S ++S F +RKMLR +L++
Sbjct: 172 PRRAFSPPPRVDSAVIQLLPRV---FPKNVGNAAFLSTLISWGFANRRKMLRNNLKNCLD 228
Query: 348 SLEIEKALGDVGLPATAAAD 367
S + + L + + A A+
Sbjct: 229 SDRLSQILTQLEINPLARAE 248
>gi|434393089|ref|YP_007128036.1| dimethyladenosine transferase [Gloeocapsa sp. PCC 7428]
gi|428264930|gb|AFZ30876.1| dimethyladenosine transferase [Gloeocapsa sp. PCC 7428]
Length = 273
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 147/259 (56%), Gaps = 14/259 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ N + +Q+ AAA + + D +LEIGPGTG LT LL +V+A+E D
Sbjct: 4 PRRVFAQHWLKNEKALNQIVAAAEITKRDRILEIGPGTGVLTRRLLPLAESVVAVEIDLD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + + +LQ DF++ + S +L+ F +S + KVVANIP+NI+ ++
Sbjct: 64 LCELLAKKLGNTENFLLLQGDFLELDLPS-LLTSFPNFQSPN---KVVANIPYNITGPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P F +VLL+Q+E A RL +P +T + +++ V + +E E+ + V
Sbjct: 120 EKLLGTIANPNPQPFDLIVLLVQKEVADRLYAKPGSKT--FGALSVRVQYLAECEFIYHV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
+F+P PKVD+AVV + +Q P + ++V F KRKMLR +L+ +
Sbjct: 178 NAKSFYPPPKVDSAVVRLRPRQLQLPP--LNPHHLETLVQLGFAAKRKMLRNNLKAIIER 235
Query: 349 LEIEKALGDVGLPATAAAD 367
+ K L ++ + A A+
Sbjct: 236 DRLTKLLENLEINPQARAE 254
>gi|375306195|ref|ZP_09771496.1| dimethyladenosine transferase [Paenibacillus sp. Aloe-11]
gi|375081782|gb|EHS59989.1| dimethyladenosine transferase [Paenibacillus sp. Aloe-11]
Length = 294
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 133/230 (57%), Gaps = 10/230 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ +AA + + LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILNKIVSAAGLDDTKGALEIGPGIGALTEKLAQSAKVVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ E A + +KV D +K +R S F +G +K VVAN+P+ ++T +
Sbjct: 85 LPILEEVLAPYEHVKVRHGDVLKLDLREVFASDF------AGVSKVSVVANLPYYVTTPI 138
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+ +LL +V+++Q+E A R+ S T +Y ++I V +YSEPE VP T F
Sbjct: 139 LMRLLEDKLPLENIVVMIQKEVAERMAA-SPGTKDYGSLSIAVQYYSEPELVCIVPNTVF 197
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
PQP V++AV+ ++++ T V K FF ++ +AF +RK + +L+
Sbjct: 198 IPQPNVESAVIRLRVRE-TPPVEVVDEKHFFEVIHAAFAQRRKTISNNLK 246
>gi|428315438|ref|YP_007113320.1| dimethyladenosine transferase [Oscillatoria nigro-viridis PCC 7112]
gi|428239118|gb|AFZ04904.1| dimethyladenosine transferase [Oscillatoria nigro-viridis PCC 7112]
Length = 270
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 137/235 (58%), Gaps = 15/235 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D++ AA++ +GD VLEIGPGTG LT LL A +V+A+E D+
Sbjct: 6 PRKQFAQHWLKSEKALDKIVKAASL-DGDRVLEIGPGTGILTRRLLPAAESVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++ D +LQ DF++ + + L+ F + ++ + KVVANIP+NI+ ++
Sbjct: 65 LCLKLAKQLGKTDNFLLLQGDFLEMDLDAE-LTAFPKFQNPN---KVVANIPYNITGPIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P F +VLL+Q+E A RL +P ++ + +++ V + +E E V
Sbjct: 121 QKLLGTISVPAAKPFDAIVLLVQKEVAQRLYAKPG--STAFGALSVRVQYLAECELICDV 178
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P +FFP PKVD+AVV +Q A + + ++V F KRKMLR +L+
Sbjct: 179 PSKDFFPPPKVDSAVVRLLPRQIET--AAVNPRYLENLVKLGFGSKRKMLRNNLK 231
>gi|420145311|ref|ZP_14652781.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
gi|398403087|gb|EJN56362.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
Length = 296
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 132/232 (56%), Gaps = 10/232 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I Q+A+AA + D VLEIGPG GSLT L VLA+E DQ +
Sbjct: 26 KKSLGQNFLTEPTILRQIASAAELTTADDVLEIGPGIGSLTEQLAQNAHQVLALEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D + VL +D +K + + + F+ + KVVAN+P+ I+T ++
Sbjct: 86 LPILADTLAPYDNVTVLNQDVLKSDLATLIRDHFDGQHK----VKVVANLPYYITTPILL 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL G F ++V+++Q+E A RL +P + Y +++ V + + F VP+T F
Sbjct: 142 RLLESGVAFDQIVVMMQKEVAERLAADPG--SKAYGSLSVAVQYQMTVKLAFIVPKTVFV 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A+V+ L + PAV T K F +V +F +RK L +L L
Sbjct: 200 PQPNVDSAIVS--LTRHVTPPAVATDEKVFARLVRGSFAQRRKSLWNNLTAL 249
>gi|414078326|ref|YP_006997644.1| dimethyladenosine transferase [Anabaena sp. 90]
gi|413971742|gb|AFW95831.1| dimethyladenosine transferase [Anabaena sp. 90]
Length = 272
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 131/235 (55%), Gaps = 14/235 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + + AA QE D VLEIGPGTG LT LL ++LA+E D+
Sbjct: 4 PRKQFAQHWLKSDKALNSIVQAANCQETDKVLEIGPGTGILTRRLLPLVKSLLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + S + + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLAKQLGEKENFLLLQGDFLTLDLLSQLTAFPNFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + F +VLL+Q+E A RL +P RT + +++ V + ++ E V
Sbjct: 120 EKLLGTISHPNPEPFDSIVLLVQKEVAERLYAKPGSRT--FGALSVRVQYLADCELICTV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P F P PKVD+AVV KQ + PA K +++ F KRKMLR +LQ
Sbjct: 178 PAAAFVPPPKVDSAVVRLLPKQ-IEIPA-HDPKKLETLIKLGFGSKRKMLRNNLQ 230
>gi|308066864|ref|YP_003868469.1| dimethyladenosine transferase [Paenibacillus polymyxa E681]
gi|305856143|gb|ADM67931.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681]
Length = 294
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 129/228 (56%), Gaps = 6/228 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ AA + E LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILNKIVNAAGLDETKGALEIGPGIGALTEKLAQSAKAVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +KV D +K +R + F + VVAN+P+ ++T ++
Sbjct: 85 LPILEEVLAPYEHVKVRHGDVLKLDLREVFAADF----ADVSKVSVVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ S T +Y ++I V +YSEPE VP T F P
Sbjct: 141 RLLEDKLPLENIVVMIQKEVAERMAA-SPGTKDYGSLSIAVQYYSEPELVCIVPNTVFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
QP V++AV+ ++++A V K FF +V +AF +RK + +L+
Sbjct: 200 QPNVESAVIRLRVREAPPV-EVVDEKHFFEVVHAAFAQRRKTISNNLK 246
>gi|365926609|ref|ZP_09449372.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420264877|ref|ZP_14767477.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394429630|gb|EJF02054.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 298
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 130/230 (56%), Gaps = 10/230 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I ++ AA V E D V+E+GPG G+LT + A VLA+E D+ +
Sbjct: 26 KKSLGQNFLTDINILHKIVAAGDVSENDDVIEVGPGIGALTEQIAKAAHQVLALEIDEQL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + V+ +D +K ++ + + F+ + KVVAN+P+ I++ +I
Sbjct: 86 IPVLAETLGQYDNVTVVLQDILKADLKELIRNNFDGKHP----IKVVANLPYYITSPIIM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL FS +V+++Q+E A RL +P T +Y + V + E + F VPRT F
Sbjct: 142 HLLDTKIAFSAIVVMMQKEVANRLSAQPG--TKDYGALTTRVQYQMECKTAFIVPRTVFI 199
Query: 295 PQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
PQP VD+A+V L++ P S + FFS+V F +RK L +LQ
Sbjct: 200 PQPNVDSAIVVLTPLQEKHLEP--YSEEQFFSLVKGCFAHRRKSLWNNLQ 247
>gi|399924799|ref|ZP_10782157.1| ribosomal RNA small subunit methyltransferase A [Peptoniphilus
rhinitidis 1-13]
Length = 259
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 140/240 (58%), Gaps = 14/240 (5%)
Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
+GQ+++++ I ++A AA + E D V+EIGPG G+LT L V+AIE D+ + L
Sbjct: 1 MGQNFLIDGNIVRKIADAAEIDEEDNVIEIGPGVGTLTEELALRAKKVVAIEIDEKLREL 60
Query: 179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238
+E A ++ +KV+ DF+ ++ L E+ F KVVAN+P+ ++T +I++L+
Sbjct: 61 HKETLA-LENVKVIYGDFLDIDLKV----LTEKEFGDESF-KVVANLPYYVTTPIIEKLV 114
Query: 239 PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPK 298
+ +++Q+E A RL +Y +++F+N+Y++ +Y+F+VPR+ F P+P
Sbjct: 115 LSNTNLISITVMVQKEVAKRL-SAGPGGKDYGSLSVFINYYTDCKYRFQVPRSVFMPKPN 173
Query: 299 VDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL---CTSLEIEKAL 355
VD+AV++ K+K + T F +V +AF +RK + SL + T EI+KAL
Sbjct: 174 VDSAVLSLKMKDREE----VDTDFLFKVVRAAFTTRRKTILNSLSNSKLNYTKDEIKKAL 229
>gi|332705358|ref|ZP_08425436.1| dimethyladenosine transferase [Moorea producens 3L]
gi|332355718|gb|EGJ35180.1| dimethyladenosine transferase [Moorea producens 3L]
Length = 282
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 143/258 (55%), Gaps = 14/258 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK QH++ + E +Q+ AA +Q+ D +LEIGPGTG LT LL +V+A+E D+ +
Sbjct: 6 RKKFAQHWLRSEEALNQIVTAANLQKSDRILEIGPGTGILTQRLLPFVQSVVAVEIDRDL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ ID +LQ DF+ + + + + +K + KVVANIP+NI+ +++
Sbjct: 66 CRLLVKKLGKIDNFLLLQGDFLSLDLDTLLANFSNFQKPN----KVVANIPYNITGPILE 121
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+LL P F +VLL+Q+E A RL +PS R ++ +++ V + +E E VP
Sbjct: 122 KLLGTITQPAVPGFDLIVLLVQKEVAQRLYAKPSSR--QFGALSVRVQYLAECELICDVP 179
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
+ F P PKVD+AVV +L + P + + +++ F KRKMLR +L+ +
Sbjct: 180 GSAFSPPPKVDSAVV--RLHPSLAEPPASDPRCLETLLKLGFGSKRKMLRNNLKSVIERD 237
Query: 350 EIEKALGDVGLPATAAAD 367
I + L + + A A+
Sbjct: 238 RITQLLEQLEISPQARAE 255
>gi|282883264|ref|ZP_06291862.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
gi|281296894|gb|EFA89392.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
Length = 288
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 138/239 (57%), Gaps = 12/239 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ I ++ +A V E D VLEIGPG G+LT L V++IE D+ +
Sbjct: 23 KTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLTEELALRAKKVVSIEIDKRLE 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
L+ E D +K++ +DF+K ++ +L + F KVVAN+P+ I+T +I++
Sbjct: 83 DLLEETLPY-DNVKIIYKDFLKLDLK----TLIDEEFKGQNF-KVVANLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + + +++Q+E A R +P +T +Y +++F+ F+ Y+F VPRT F P
Sbjct: 137 LLLNSENIEIINVMIQKEVAKRFTAQP--QTKDYGSLSVFIQFFCRAFYEFTVPRTVFMP 194
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
+P VD+ V ++K+ D P + + FF +V +AF+ +RK L SL +L+ K
Sbjct: 195 KPNVDSGVCKLEVKR--DLPNI-DREEFFKIVRAAFSKRRKTLVNSLSQSQLNLDKNKV 250
>gi|335029369|ref|ZP_08522876.1| dimethyladenosine transferase [Streptococcus infantis SK1076]
gi|334268666|gb|EGL87098.1| dimethyladenosine transferase [Streptococcus infantis SK1076]
Length = 290
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 143/267 (53%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ +T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPNTKT--YGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++++ AV K FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRSEPAVAVEDEKFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + EI+ KAL GL
Sbjct: 238 WNNLTGYFGKTDEIKDKLTKALDQAGL 264
>gi|126701147|ref|YP_001090044.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Clostridium
difficile 630]
gi|254977148|ref|ZP_05273620.1| dimethyladenosine transferase [Clostridium difficile QCD-66c26]
gi|255094477|ref|ZP_05323955.1| dimethyladenosine transferase [Clostridium difficile CIP 107932]
gi|255316228|ref|ZP_05357811.1| dimethyladenosine transferase [Clostridium difficile QCD-76w55]
gi|255518890|ref|ZP_05386566.1| dimethyladenosine transferase [Clostridium difficile QCD-97b34]
gi|255652069|ref|ZP_05398971.1| dimethyladenosine transferase [Clostridium difficile QCD-37x79]
gi|260685043|ref|YP_003216328.1| dimethyladenosine transferase [Clostridium difficile CD196]
gi|260688701|ref|YP_003219835.1| dimethyladenosine transferase [Clostridium difficile R20291]
gi|306521805|ref|ZP_07408152.1| dimethyladenosine transferase [Clostridium difficile QCD-32g58]
gi|384362717|ref|YP_006200569.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium difficile BI1]
gi|118600854|sp|Q181C1.1|RSMA_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|115252584|emb|CAJ70427.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) [Clostridium
difficile 630]
gi|260211206|emb|CBA66699.1| dimethyladenosine transferase [Clostridium difficile CD196]
gi|260214718|emb|CBE07385.1| dimethyladenosine transferase [Clostridium difficile R20291]
Length = 289
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 138/246 (56%), Gaps = 10/246 (4%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ E K PR F PQP VD+ V+ ++ Y V + FF V ++F +RK L
Sbjct: 180 CDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEDIFFKTVKASFGQRRKTLL 238
Query: 340 KSLQHL 345
SL L
Sbjct: 239 NSLGGL 244
>gi|255283478|ref|ZP_05348033.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469]
gi|255265935|gb|EET59140.1| dimethyladenosine transferase [Marvinbryantia formatexigens DSM
14469]
Length = 298
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 139/253 (54%), Gaps = 15/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + D++ AAA + + D VLEIGPG G++T L A VLA+E D+ +
Sbjct: 22 QKKFGQNFLIDGHVLDKIIAAADITKEDFVLEIGPGIGTMTQYLSEAAGRVLAVEIDKML 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +++L ED +K I +L E + KVVAN+P+ I+T +I
Sbjct: 82 IPILHETLAGYENVEILNEDILKVDIA----ALVEEKNGGKPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + +++Q+E A R+ +P + +Y +++ V +Y EP VP F
Sbjct: 137 GLLEQHVPVKSITVMVQKEVAQRMQAQPG--SKDYGALSLAVQYYCEPYIAANVPPNCFI 194
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTS-TKSFFSMVSSAFNGKRKMLRKSLQH----LCTSL 349
P+PKV +AV+ +L + P T K F+++ ++FN +RK L L + T
Sbjct: 195 PRPKVGSAVI--RLTAHREPPVKTEHEKLMFALIRASFNQRRKTLANGLSNAPELTFTKE 252
Query: 350 EIEKALGDVGLPA 362
EI A+ +G+PA
Sbjct: 253 EITGAIEKLGVPA 265
>gi|255102733|ref|ZP_05331710.1| dimethyladenosine transferase [Clostridium difficile QCD-63q42]
gi|255308554|ref|ZP_05352725.1| dimethyladenosine transferase [Clostridium difficile ATCC 43255]
gi|423090624|ref|ZP_17078913.1| dimethyladenosine transferase [Clostridium difficile 70-100-2010]
gi|357556328|gb|EHJ37943.1| dimethyladenosine transferase [Clostridium difficile 70-100-2010]
Length = 289
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 138/246 (56%), Gaps = 10/246 (4%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ E K PR F PQP VD+ V+ ++ Y V + FF V ++F +RK L
Sbjct: 180 CDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEDIFFKTVKASFGQRRKTLL 238
Query: 340 KSLQHL 345
SL L
Sbjct: 239 NSLGGL 244
>gi|414154356|ref|ZP_11410675.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411454147|emb|CCO08579.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 294
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 134/232 (57%), Gaps = 11/232 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ+++L++ I +++ AA + D+V EIGPG G+LT L + V+A+E D ++
Sbjct: 22 RKALGQNFLLDANIIEKIVQAAELSREDLVFEIGPGLGTLTRRLARSAGQVIAVELDTNL 81
Query: 176 VGLVRERFASIDQLKV-----LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
+ ++ E A +V LQ DF K + +F + G+ K+VAN+P+ I+
Sbjct: 82 LPILAETLADFPNTRVVHGDALQADFDKLA-GEYAGGIFG--QPGRGY-KLVANLPYYIT 137
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
T ++ LL G +V+++Q+E A RL+ P +Y +++ V +Y+ PE +VP+
Sbjct: 138 TPLLMHLLTGGFNLQCLVVMMQKEVADRLLAPP-GGKDYGSLSVAVQYYTVPEVVARVPK 196
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
T FFP P+VD+AVV ++A VTS FF +V +AF +RK L SL
Sbjct: 197 TVFFPAPEVDSAVVRLT-RRAVPPVQVTSEALFFKVVRAAFGQRRKTLLNSL 247
>gi|407010616|gb|EKE25458.1| dimethyladenosine transferase [uncultured bacterium]
Length = 268
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 136/234 (58%), Gaps = 16/234 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + ++ +++ + D+V+EIGPG G+LT +L+ V+AIE D +
Sbjct: 7 KKSLGQNFLKDDQVLEKIVKNGNISPDDVVIEIGPGQGALTELLVEKCKKVIAIELDDRL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E+F + ++++ +D +K ++ L + + SG+ KV+ANIP+ I+ +I+
Sbjct: 67 IPVLQEKFQYDENVEIIHDDILKI----NLPELIVKNELQSGY-KVIANIPYYITAPIIR 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL SE++L++Q+E A R+ + + + + V +YSE Y F VPR F P
Sbjct: 122 LLLETKFPPSEIILMVQKEVAERI---TAKPGSMSILAVSVQYYSEARYLFTVPRAAFDP 178
Query: 296 QPKVDAAVVTFKLKQATDYPAVTS-----TKSFFSMVSSAFNGKRKMLRKSLQH 344
PKVD+A++ ++ +VTS K FF +V + F+ KRK L +L +
Sbjct: 179 VPKVDSAIIKI---VTSNQQSVTSEKKEEVKKFFRIVRAGFSAKRKTLENNLSN 229
>gi|425466335|ref|ZP_18845638.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9809]
gi|389831207|emb|CCI26228.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9809]
Length = 268
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 140/260 (53%), Gaps = 23/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGARLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + LL+Q+E A RLV PS T Y +++ + + ++ ++ V
Sbjct: 114 ERLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLADCQWICDV 171
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
PR F P P+VD+AV+ + P S +F S ++S F +RKMLR +L++
Sbjct: 172 PRRAFSPPPQVDSAVIQLLPRV---LPNNVSNAAFLSTLISWGFANRRKMLRNNLKNCLD 228
Query: 348 SLEIEKALGDVGLPATAAAD 367
S + + L + + A A+
Sbjct: 229 SDRLSQILTQLEINPLARAE 248
>gi|427737776|ref|YP_007057320.1| dimethyladenosine transferase [Rivularia sp. PCC 7116]
gi|427372817|gb|AFY56773.1| dimethyladenosine transferase [Rivularia sp. PCC 7116]
Length = 272
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 142/258 (55%), Gaps = 12/258 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ + + + + AAA ++E D VLEIGPG G LT LL +VLA+E D+
Sbjct: 3 PRRVFAQHWLQSDKALNSIIAAAELKETDRVLEIGPGKGVLTRQLLEKVNSVLAVEIDRD 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +L EDF+ + S ++ F + ++ + KVVANIP+NI+ +I
Sbjct: 63 LCKLLVQKLGEKENFLLLNEDFLNVDL-SVLVKDFSKFQNQN---KVVANIPYNITGPII 118
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + +VLL+Q+E A R+V RTS + +++ V + ++ E VP
Sbjct: 119 ERLLGKIGSPNPQPYDSIVLLVQKEVAERIVAKPGRTS-FGALSVRVQYLADCEIICTVP 177
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F+P PKVD+AV+ +L + K ++V F+ KRKMLR +LQ L
Sbjct: 178 AKAFYPPPKVDSAVI--RLIPTEREVVANNPKKLETLVKQGFSAKRKMLRNNLQSLVERE 235
Query: 350 EIEKALGDVGLPATAAAD 367
+ + L + + A A+
Sbjct: 236 NLTQLLEKLSVNPQARAE 253
>gi|167748007|ref|ZP_02420134.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662]
gi|167652584|gb|EDR96713.1| dimethyladenosine transferase [Anaerostipes caccae DSM 14662]
Length = 286
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 139/250 (55%), Gaps = 13/250 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++S + +++ AA + E D VLEIGPG G++T L V+A+E D ++
Sbjct: 22 QKKFGQNFLIDSHVLEKIIDAANITEDDFVLEIGPGIGTMTQYLSEHAREVMAVEIDHNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D ++VL ED +K I +K+ KVVAN+P+ I+T +I
Sbjct: 82 IPILKETLAGYDNVEVLNEDILKVDIGK-----IAEKKNQGRPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + + +++Q+E A R+ + T +Y +++ V FY+EP VP F P
Sbjct: 137 GLFEKNVPMNSLTVMVQKEVAQRM-QAGPGTKDYGALSLAVQFYAEPYIVANVPPNCFMP 195
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT----SLE 350
+PKV +AV+ +L + D P V + + FS++ ++FN +RK L+ + + T +
Sbjct: 196 RPKVGSAVI--RLTRYKDMPVKVKNEQLMFSIIRASFNQRRKTLQNGINNSSTLHFSKEQ 253
Query: 351 IEKALGDVGL 360
+ AL +GL
Sbjct: 254 VVDALDKMGL 263
>gi|333396677|ref|ZP_08478492.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
Length = 296
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 128/231 (55%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I Q+A+AA + D VLEIGPG GSLT L VLA+E DQ +
Sbjct: 26 KKSLGQNFLTEPTILRQIASAAELTTADDVLEIGPGIGSLTEQLAQNAHQVLALEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D + VL +D +K S + +L KVVAN+P+ I+T ++
Sbjct: 86 LPILADTLAPYDNVTVLNQDVLK----SDLATLIREHFDGQHKVKVVANLPYYITTPILL 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL G F ++V+++Q+E A RL + Y +++ V + + F VP+T F P
Sbjct: 142 RLLESGVAFDQIVVMMQKEVAERLAAAP-GSKAYGSLSVAVQYQMTVKLAFIVPKTVFVP 200
Query: 296 QPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
QP VD+A+V+ L + PAV T K F +V +F +RK L +L L
Sbjct: 201 QPNVDSAIVS--LTRHVTPPAVATDEKVFARLVRGSFAQRRKSLWNNLTAL 249
>gi|402830908|ref|ZP_10879602.1| dimethyladenosine transferase [Capnocytophaga sp. CM59]
gi|402283342|gb|EJU31860.1| dimethyladenosine transferase [Capnocytophaga sp. CM59]
Length = 263
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 126/241 (52%), Gaps = 15/241 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K LGQH++ + I Q+A ++ VLEIGPGTG LT LL A V IE D+
Sbjct: 9 PKKHLGQHFLTDLNIAQQIAQTLSLCGYKQVLEIGPGTGVLTQFLLEKDAEVFVIEIDKE 68
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V ++ F + +L EDF+K I S+ + + FA ++ N P+NIS+ ++
Sbjct: 69 SVAYLKAYFPKLKG-HILCEDFLKFDIVSYF--------NKTPFA-IIGNFPYNISSQIV 118
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+LL + E + Q+E A R+ E P ++ Y +++ + E EY F VP F
Sbjct: 119 FKLLEIRFFVPEFAGMFQKEVAERICEGPGSKS--YGILSVLTQAFYETEYLFTVPEHVF 176
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P PKV + V+ +LK+ DY K FFS+V +AF +RK LR SL+ E K
Sbjct: 177 NPPPKVKSGVI--RLKRKEDYTLACDEKMFFSVVKTAFGQRRKTLRNSLKSFLLEREALK 234
Query: 354 A 354
A
Sbjct: 235 A 235
>gi|257066995|ref|YP_003153251.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
gi|256798875|gb|ACV29530.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
Length = 280
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ +++ AA V + VLEIGPG G++T + V+AIE D ++
Sbjct: 23 KSLGQNFLIDKNFVEKIVDAADVDSSN-VLEIGPGIGTITYEMAKTAKKVVAIEIDSSLI 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D K++ ED +K + + E + F KVV+N+P+ I+T +I++
Sbjct: 82 PIIGENMEEFDNFKLIHEDILKADLG----RIIEEEFAGEDF-KVVSNLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L+ ++ +++Q+E A R++ ++ +Y +++F+ +YS+ E VP++ F PQ
Sbjct: 137 LIETDLPCRDMTIMVQKEVADRMLADE-KSKDYSSLSVFIKYYSDAEKITNVPKSVFMPQ 195
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALG 356
PK+D+ V+ L++ Y K F++V + FN +RK + SL C ++ A
Sbjct: 196 PKIDSTVLKLNLRK---YRDDVDEKKLFALVHAGFNKRRKTILNSLSDACEKEKLRLAFD 252
Query: 357 DVGLPATAAAD 367
+G+ A+
Sbjct: 253 KLGIKNNLRAE 263
>gi|67923799|ref|ZP_00517261.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501]
gi|416399871|ref|ZP_11687001.1| Dimethyladenosine transferase [Crocosphaera watsonii WH 0003]
gi|67854342|gb|EAM49639.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501]
gi|357262340|gb|EHJ11488.1| Dimethyladenosine transferase [Crocosphaera watsonii WH 0003]
Length = 271
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 137/252 (54%), Gaps = 14/252 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +Q+ AA ++ D +LEIGPGTG LT LL +VLA+E D
Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPLVDSVLAVELDWD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + F + D +LQ D +K I + KVVANIP+NI++ ++
Sbjct: 64 LCKKLVKSFGNYDNFLLLQGDILKLDITTEAQDF----PKFLPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + +VLL+Q+E A R+V P +T Y +++ + + ++ Y V
Sbjct: 120 EKLLGRISSPKTPFYDLIVLLIQKEVAQRIVAYPGNKT--YGALSVKMQYLADCNYICDV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
PR F P PKVD+AV+TF+ + + + K ++++ F+ +RKMLR +L+ L S
Sbjct: 178 PRKAFSPPPKVDSAVITFRPRVLAN--SAVDPKRLETLINLGFSNRRKMLRNNLKSLIDS 235
Query: 349 LEIEKALGDVGL 360
+ K L ++ L
Sbjct: 236 DRLGKFLREIDL 247
>gi|390457070|ref|ZP_10242598.1| dimethyladenosine transferase [Paenibacillus peoriae KCTC 3763]
Length = 294
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ +AA + + LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILNKIVSAAGLDDTKGALEIGPGIGALTEKLAQSAKVVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +KV D +K +R S F S VVAN+P+ ++T ++
Sbjct: 85 LPILGEVLAPYEHVKVRHGDVLKLDLREVFASDFAEVSKVS----VVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ S T +Y ++I V +YSEPE VP T F P
Sbjct: 141 RLLEDKLPLENIVVMIQKEVAERMAA-SPGTKDYGSLSIAVQYYSEPELVCIVPNTVFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
QP V++AV+ ++++ T V K FF ++ +AF +RK + +L+
Sbjct: 200 QPNVESAVIRLRVRE-TPPVEVVDEKHFFEVIHAAFAQRRKTISNNLK 246
>gi|113474554|ref|YP_720615.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101]
gi|110165602|gb|ABG50142.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101]
Length = 281
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 134/238 (56%), Gaps = 20/238 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++L+ + +++ AA + E D +LEIGPGTG LT+ LL A+V+A+E D+
Sbjct: 5 PRKRFAQHWLLSDKALNKIIQAAELSESDRILEIGPGTGVLTHRLLPLAASVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA---KVVANIPFNIST 231
+ + ++F + +LQ D + + +++ GF KVVANIP+NI+
Sbjct: 65 LCQKLVKKFGRVKNFLLLQGDILSLDLETNLAQFI-------GFQNPHKVVANIPYNITG 117
Query: 232 DVIKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
++++LL P+ + + +VLLLQ+E A R+ +P + Y +++ + + ++ E+
Sbjct: 118 LILEKLLGTISQPLTNTYDLIVLLLQKEVADRICAKPD--SKAYSSLSVKIQYLAKCEFI 175
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
VP F+P PKVD+AV+ +L+ P + K +V F KRKMLR +L+
Sbjct: 176 CDVPAKAFYPPPKVDSAVI--RLRPQLIEPQANNPKQMEMLVKLGFASKRKMLRNNLK 231
>gi|425435045|ref|ZP_18815505.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9432]
gi|389675218|emb|CCH95619.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9432]
Length = 268
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 140/260 (53%), Gaps = 23/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + LL+Q+E A RLV PS T Y +++ + + ++ ++ V
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLADCQWICDV 171
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
PR F P P+VD+AV+ + P S +F S +VS F +RKMLR +L++
Sbjct: 172 PRRAFSPPPRVDSAVIQLLPRV---LPNNVSNAAFLSTLVSLGFANRRKMLRNNLKNCLD 228
Query: 348 SLEIEKALGDVGLPATAAAD 367
S + + L + + A A+
Sbjct: 229 SDRLIQILTQLEINPLARAE 248
>gi|89898507|ref|YP_515617.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
gi|119365014|sp|Q253R6.1|RSMA_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|89331879|dbj|BAE81472.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
Length = 284
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 18/234 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 26 PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 84
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C L + K G +VVAN+P++I+T ++
Sbjct: 85 ---MFEE---TLKQLPIDLEITDACKYPLSQL----QEKGWQGKGRVVANLPYHITTPLL 134
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L + + + + +++Q+E A R+ +P EY + IF+ F+++ Y FKV
Sbjct: 135 TKLFLEVPNQWKTITVMMQDEVARRITAQPG--GKEYGSLTIFLQFFADVRYAFKVSSGC 192
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHL 345
FFP+P+V +AVV +K +P S K FFS+ +AF +RK+L +L++L
Sbjct: 193 FFPKPQVSSAVVHMTVKDT--FPLEESLHKKFFSLTRAAFGQRRKLLANALKNL 244
>gi|17230721|ref|NP_487269.1| dimethyladenosine transferase [Nostoc sp. PCC 7120]
gi|27151584|sp|Q8YS62.1|RSMA_NOSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|17132324|dbj|BAB74928.1| rRNA (adenine-N6,N6)-dimethyltransferase [Nostoc sp. PCC 7120]
Length = 271
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 142/258 (55%), Gaps = 12/258 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA D +LEIGPGTG LT LL A +++A+E D+
Sbjct: 4 PRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPAVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++ S + +K + KVVANIP+NI+ +I
Sbjct: 64 LCELLAKQLGKKENFLLLQGDFLTIDLAANLGSFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + F +VLL+Q+E A RL S + + +++ V + ++ E+ VP
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLIQKEVAERLYAKS-GSRTFGALSVRVQYLADCEFICDVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
+ F P PKVD+AVV + +Q + P V K ++V F KRKMLR +LQ +
Sbjct: 179 ASAFHPPPKVDSAVVRLRPRQ-IEIP-VNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRD 236
Query: 350 EIEKALGDVGLPATAAAD 367
+ + L + + A A+
Sbjct: 237 RLSQLLEQLNINPQARAE 254
>gi|440779977|ref|ZP_20958565.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium pasteurianum DSM 525]
gi|440221653|gb|ELP60857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium pasteurianum DSM 525]
Length = 280
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 135/235 (57%), Gaps = 12/235 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++++E+ + A V + D V+EIGPG G+LT LLNA +V AIE D ++
Sbjct: 19 KSLGQNFLMDNEVLKDIVEGAEVSKEDFVIEIGPGVGTLTRKLLNAAKSVCAIELDSDLL 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++ +D +K + R KS K+VAN+P+ ++T +I +
Sbjct: 79 PILEQELKDYDNFMLVHKDALKVDFN----EITAREKS----VKLVANLPYYVTTPIISK 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G +F + +++Q+E A R+ +P+ + EY +++ V +Y + + KV +F P
Sbjct: 131 LLTGGYVFKSLTIMIQKEVAERIAAKPNCK--EYGALSLLVQYYCDTKIIRKVSPESFIP 188
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
+PKV++ V+ + + V S K FF+++ +AFN +RK L +L+ L S E
Sbjct: 189 RPKVESIVIRLD-RLSEPRVKVKSEKLFFTIIRNAFNMRRKTLWNALKQLKLSKE 242
>gi|298492284|ref|YP_003722461.1| dimethyladenosine transferase ['Nostoc azollae' 0708]
gi|298234202|gb|ADI65338.1| dimethyladenosine transferase ['Nostoc azollae' 0708]
Length = 277
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 133/235 (56%), Gaps = 14/235 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + + AA QE D VLEIGPGTG LT LL ++LA+E D
Sbjct: 4 PRKQFAQHWLKSEKALNTIVKAAECQETDRVLEIGPGTGILTRRLLPLVHSLLAVEIDPD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ ++ S + + + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGERENFLLLQGDFLTLNVPSQLTAFSKFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + +VLL+Q+E A RL +P R+ + +++ V + ++ E V
Sbjct: 120 EKLLGTIASPNPEPYDSIVLLVQKEVAERLYAKPGSRS--FGALSLRVQYLADCELICSV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P F+P PKVD+AVV L + + P V K ++V F KRKMLR +LQ
Sbjct: 178 PAGAFYPPPKVDSAVVRL-LPRQIEIP-VNDPKKLENLVKLGFGSKRKMLRNNLQ 230
>gi|326804008|ref|YP_004321826.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650269|gb|AEA00452.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
Length = 294
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 10/232 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++ +I +++ AA + + V+EIGPG G+LT L + VLA E D +
Sbjct: 24 KKSLGQNFLMEPQILEKMVDAADIDQDTDVIEIGPGIGALTEFLCESAGRVLAFEVDDRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ D L VL +D ++ + + + F K + VVAN+P+ I+T +I
Sbjct: 84 LPVLEAELGHYDNLTVLHQDILEADLNASVSQYFPDSKRLA----VVANLPYYITTPIIF 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L S+ L++Q E A RL + T Y + I +N+Y + E KVP+T F P
Sbjct: 140 HFLESDLEVSDFALMMQYEVAERLTAQA-GTKAYSALTIVLNYYCQSEIAVKVPKTVFKP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQHL 345
+PKVD+AV+ K +QA P V FF +V AF +RK L +L+ L
Sbjct: 199 RPKVDSAVLHLKRRQA---PPVKPQNEALFFKVVKGAFAHRRKTLWNNLKSL 247
>gi|293557287|ref|ZP_06675834.1| dimethyladenosine transferase [Enterococcus faecium E1039]
gi|425056955|ref|ZP_18460392.1| dimethyladenosine transferase [Enterococcus faecium 504]
gi|291600574|gb|EFF30879.1| dimethyladenosine transferase [Enterococcus faecium E1039]
gi|403041311|gb|EJY52333.1| dimethyladenosine transferase [Enterococcus faecium 504]
Length = 294
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 132/253 (52%), Gaps = 17/253 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAKHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESNLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----T 347
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH T
Sbjct: 199 PQPNVDSAILKLTRR---DIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQHSYGKDDQT 255
Query: 348 SLEIEKALGDVGL 360
+ K+LG G+
Sbjct: 256 KAWLAKSLGTAGI 268
>gi|406920860|gb|EKD58852.1| Dimethyladenosine transferase [uncultured bacterium]
Length = 265
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 134/238 (56%), Gaps = 11/238 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + ++ ++ + + D V+EIGPG G+LT +L V+AIE D +
Sbjct: 6 KKSLGQNFLKDEQVLARIVESGNISSEDTVIEIGPGQGALTELLAERCKKVIAIELDDRL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E F + ++++ +D +K ++ +L E G+ KV+ANIP+ I+ +I+
Sbjct: 66 IPVLQENFQYDEHVEIVHDDILKI----NLPALIESNNLQQGY-KVIANIPYYITAPIIR 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL SE++L++Q+E A R+ + + + + V +YS+ +Y F VPR+ F P
Sbjct: 121 LLLETKFPPSEIILMVQKEVAERI---TAKAGAMSILAVSVQYYSDAKYLFTVPRSAFDP 177
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
PKVD+AV+ ++ TK FF +V + F+ KRK L +L L +EK
Sbjct: 178 VPKVDSAVIRIMNHESGSKENKEETKKFFRIVRAGFSAKRKTLE---NNLSNGLHLEK 232
>gi|229828784|ref|ZP_04454853.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM
14600]
gi|229793378|gb|EEP29492.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM
14600]
Length = 290
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 150/271 (55%), Gaps = 15/271 (5%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
+TI L G +K GQ+++++ I + + AA + D +LEIGPG G+LT L A
Sbjct: 9 STIAVLEKYGFSFQKKYGQNFLIDRHILEGIVDAAQISREDFILEIGPGIGTLTQYLCEA 68
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
G VLA+E D+ ++ ++ + +S + ++V+ D +K LS K++S K+V
Sbjct: 69 GREVLAVELDRKLIPILADTLSSYNNVEVICHDVLKLD-----LSGLIAEKNASRPIKLV 123
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSE 281
AN+P+ I+T +I L + +++Q+E A R+ E P + +Y +++ V +Y++
Sbjct: 124 ANLPYYITTPIIMSLFESHLPLESITIMVQKELADRMQEGPG--SKDYGALSLAVQYYAK 181
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSF-FSMVSSAFNGKRKMLRK 340
PE F+VP + F P+PKV +AV+ ++ P S +++ F ++ ++FN +RK L
Sbjct: 182 PEVMFQVPPSAFIPRPKVGSAVIRLTCHKSC--PVEVSDEAYLFRVIRASFNQRRKTLTN 239
Query: 341 SLQHL----CTSLEIEKALGDVGLPATAAAD 367
L++ +I + + ++GLPAT +
Sbjct: 240 GLKNAPDIRLPKEQITEVIEEMGLPATVRGE 270
>gi|375087673|ref|ZP_09734019.1| dimethyladenosine transferase [Dolosigranulum pigrum ATCC 51524]
gi|374563949|gb|EHR35253.1| dimethyladenosine transferase [Dolosigranulum pigrum ATCC 51524]
Length = 296
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 134/244 (54%), Gaps = 14/244 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI L +KSLGQ++++++ I +++ AA +V + V+EIGPG G+LT +
Sbjct: 11 TIAILKRYNLQAKKSLGQNFLIDTNILEKIVAAGSVDKRTTVIEIGPGIGALTEQIARHA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV- 222
V A E DQ ++ ++ E A ++V +D + + LS FER + VV
Sbjct: 71 KQVYAFEIDQRLIPVLEETLADYTNIEVFNQDILDVN-----LSEFERNYLAEAERVVVM 125
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSE 281
AN+P+ I+T +I +L G ++V ++Q+E A R+ EP T +Y ++I + ++ E
Sbjct: 126 ANLPYYITTPIIMGILESGLEADQLVFMVQKEVAARMSAEPG--TKDYGSLSIALQYFGE 183
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLR 339
PE F VP T F PQP VD+A++ KL+ D PAV + FF + + F +RK L
Sbjct: 184 PELAFTVPPTVFKPQPNVDSAIIQIKLR---DKPAVAVQDEEFFFKLARAGFAQRRKTLW 240
Query: 340 KSLQ 343
+++
Sbjct: 241 NNMK 244
>gi|385810925|ref|YP_005847321.1| rRNA methylatin simethyladenosine transferase [Ignavibacterium
album JCM 16511]
gi|383802973|gb|AFH50053.1| rRNA methylatin simethyladenosine transferase [Ignavibacterium
album JCM 16511]
Length = 257
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 131/230 (56%), Gaps = 17/230 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K GQ+++ ++ I ++ Q+ D ++EIGPG G+LT +L N+GA V AIE D+
Sbjct: 4 PIKRFGQNFLKDNNILRKITEVINPQKNDKIIEIGPGEGALTKLLSNSGADVTAIEIDKR 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++E + ++K++ +DF++ + S ++V NIP+NI++ +I
Sbjct: 64 VIEHLKETYP---EVKIINKDFLEIDLTQF----------GSSDLRIVGNIPYNITSSII 110
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ ++ + V ++Q E A R+ T +Y +++ +N++SE E+ FKV F+
Sbjct: 111 FKLIENYNLIRDAVFMVQYEVAKRMTAKK-GTKDYGILSVLLNYFSETEFCFKVSPNVFY 169
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+PKV +AVV K K+ TD K F +V +AF +RK L+ SL +
Sbjct: 170 PKPKVFSAVVKIKFKKNTDEAL---NKVFIQIVKAAFGNRRKTLKNSLSN 216
>gi|126657589|ref|ZP_01728744.1| dimethyladenosine transferase [Cyanothece sp. CCY0110]
gi|126621045|gb|EAZ91759.1| dimethyladenosine transferase [Cyanothece sp. CCY0110]
Length = 270
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 139/251 (55%), Gaps = 12/251 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +Q+ AA ++ D +LEIGPGTG LT LL +++A+E D
Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPLVQSLIAVELDWD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + + D +LQ D +K I + E+ KVVANIP+NI++ ++
Sbjct: 64 LCKKLVKSLGNEDNFLLLQGDILKLDIATEA----EQFPKFLPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + +VLL+Q+E A R+V S + Y ++I + + ++ Y VP
Sbjct: 120 EKLLGNIASPENPPYDLIVLLIQKEVAQRIVA-SPGSKNYGALSIKMQYLADCNYICDVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
+ +F+P PKVD+AV+TF+ + + + + K ++++ F+ +RKMLR +LQ L
Sbjct: 179 KKSFYPPPKVDSAVITFRPRPLLN--SAINPKQLETLINLGFSSRRKMLRNNLQSLIDRD 236
Query: 350 EIEKALGDVGL 360
+ K L ++ L
Sbjct: 237 LLTKFLTEIDL 247
>gi|399007391|ref|ZP_10709901.1| dimethyladenosine transferase [Pseudomonas sp. GM17]
gi|425901934|ref|ZP_18878525.1| dimethyladenosine transferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397892756|gb|EJL09233.1| dimethyladenosine transferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398120363|gb|EJM10027.1| dimethyladenosine transferase [Pseudomonas sp. GM17]
Length = 272
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + GD +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSINAKSGDRMLEIGPGQGALTEGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA D + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGRDNFSLHQGDALKFD--------FNSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLQNAGLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L TS EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERIVREAFNQRRKTLRNTLKALLTSAEIEAA 238
>gi|390441516|ref|ZP_10229581.1| Ribosomal RNA small subunit methyltransferase A [Microcystis sp.
T1-4]
gi|389835156|emb|CCI33707.1| Ribosomal RNA small subunit methyltransferase A [Microcystis sp.
T1-4]
Length = 268
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 140/260 (53%), Gaps = 23/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + LL+Q+E A RLV PS + Y +++ + + ++ ++ V
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--SKAYSALSVRIQYLADCQWICDV 171
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
PR F P P+VD+AV+ + P S +F S ++S F +RKMLR +L++
Sbjct: 172 PRRAFSPPPQVDSAVIQLLPRV---LPNNVSNPAFLSTLISWGFANRRKMLRNNLKNCLD 228
Query: 348 SLEIEKALGDVGLPATAAAD 367
S + + L + + A A+
Sbjct: 229 SDRLSQILTQLEINPLARAE 248
>gi|417849029|ref|ZP_12494958.1| dimethyladenosine transferase [Streptococcus mitis SK1080]
gi|339457322|gb|EGP69897.1| dimethyladenosine transferase [Streptococcus mitis SK1080]
Length = 290
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AESAAEVMAFEIDHRLVPILADTLCDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTDYFGKTEKVKDKLTKALDQSGL 264
>gi|311070689|ref|YP_003975612.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
gi|419823447|ref|ZP_14346994.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus atrophaeus C89]
gi|310871206|gb|ADP34681.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
gi|388472420|gb|EIM09196.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus atrophaeus C89]
Length = 292
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRAKQVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K +R ++ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVR----TVIEEQFHDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEENLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMTVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L++ PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLLLREG---PAVDVVNEAFFFQLIKASFAQRRK 237
>gi|406586585|ref|ZP_11061513.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD1S]
gi|404473936|gb|EKA18259.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD1S]
Length = 290
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 141/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ S K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQSF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV + FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDEQFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTDEVKEKLTKALDQAGL 264
>gi|419767042|ref|ZP_14293211.1| dimethyladenosine transferase [Streptococcus mitis SK579]
gi|383353509|gb|EID31120.1| dimethyladenosine transferase [Streptococcus mitis SK579]
Length = 290
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVINEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVAKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|227824447|ref|ZP_03989279.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
gi|352684421|ref|YP_004896406.1| dimethyladenosine transferase [Acidaminococcus intestini RyC-MR95]
gi|226904946|gb|EEH90864.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
gi|350279076|gb|AEQ22266.1| dimethyladenosine transferase [Acidaminococcus intestini RyC-MR95]
Length = 287
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 131/241 (54%), Gaps = 16/241 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L++ G +K GQ++++N + +A A + GD+VLE+GPG G+LT L GA V
Sbjct: 22 LDTFGLHTKKRFGQNFLINESVVRGIAEKAKIGPGDLVLEVGPGIGTLTQALAETGANVK 81
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
++E D+ ++ ++R+ D ++++ D +K ++ + V AN+P+
Sbjct: 82 SVEIDESLLPILRKTLEGYDNVEIIHGDILKVDLKDI---------TGGKPFTVAANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T +I LL +V+++Q+E A R+ P T Y P+++ + +YSEP+
Sbjct: 133 YITTPIIFSLLEANLPLKRIVVMVQKEVAERMAARPG--TKAYGPLSLALQYYSEPQLAI 190
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFF-SMVSSAFNGKRKMLRKSLQHL 345
VP +F P PKVD+ VV + +++ P V S + +V +AF+ +RKMLR L+ +
Sbjct: 191 PVPAHDFMPAPKVDSMVVVCEKRES---PIVNVDASLYVKVVRAAFSQRRKMLRTCLKSM 247
Query: 346 C 346
Sbjct: 248 V 248
>gi|428214092|ref|YP_007087236.1| dimethyladenosine transferase [Oscillatoria acuminata PCC 6304]
gi|428002473|gb|AFY83316.1| dimethyladenosine transferase [Oscillatoria acuminata PCC 6304]
Length = 279
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 140/264 (53%), Gaps = 20/264 (7%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
+PRK QH++ + + +++ AAA+ GD +LEIGPGTG LT LL+ +V+A+E D+
Sbjct: 5 YPRKQFAQHWLQSDKALNEIVNAAALSPGDRILEIGPGTGILTRQLLSRAESVVAVEIDR 64
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ + ++ I +L DF+ + S + E + KVVANIP+NI+ +
Sbjct: 65 NLSQKLAKKLGEIPNFLLLCADFLDLDLESVLTQTPEHFHHPN---KVVANIPYNITGPI 121
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
+++LL P + VVLL+Q+E A R+ P RT Y +++ V + +E EY
Sbjct: 122 LEKLLGTISQPPRMSYQSVVLLIQKEVAERINAAPGSRT--YGALSVRVQYVAECEYICT 179
Query: 288 VPRTNFFPQPKVDAAVVTFK---LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VP F+P PKVD+AVV L D P T +V F+ KRKMLR +L+
Sbjct: 180 VPAKAFYPAPKVDSAVVRLSPRPLALPADRPRWLET-----LVKVGFSSKRKMLRNNLKG 234
Query: 345 LCTSLEIEKALGDVGL-PATAAAD 367
L ++ + L + + P A D
Sbjct: 235 LIDRDQLTQFLEQLNINPQVRAED 258
>gi|121997814|ref|YP_001002601.1| dimethyladenosine transferase [Halorhodospira halophila SL1]
gi|166221671|sp|A1WVT7.1|RSMA_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|121589219|gb|ABM61799.1| dimethyladenosine transferase [Halorhodospira halophila SL1]
Length = 265
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 14/246 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+++ + + ++ A A +EG+ +LEIGPG G+LT LL T+ A+E D+
Sbjct: 5 PRKRFGQNFLRDPAVIQRMVTAIAPREGETLLEIGPGEGALTEPLLARLGTLTAVELDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ERFA L+V++ D + + G +VV N+P+N+ST ++
Sbjct: 65 LAPRLQERFAP--ALRVIEGDALALDPAEL--------APAQGRLRVVGNLPYNVSTPIL 114
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL D+ ++ LLLQ E R+V P + R +++ V + E F VP FF
Sbjct: 115 FHLLAAADVIEDLHLLLQREVVDRMVAPPGGKTRGR-LSVMVQYRCRVERCFNVPAGAFF 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFF-SMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P PKV ++ V +L PA +++ +V++AF G+RK LR SL+ L T+ E
Sbjct: 174 PAPKVMSSFV--RLVPHRPLPARAQDEAWLQEVVTAAFGGRRKTLRNSLKGLVTAQAFEA 231
Query: 354 ALGDVG 359
A D G
Sbjct: 232 AGVDPG 237
>gi|348026759|ref|YP_004766564.1| ribosomal RNA small subunit methyltransferase A [Megasphaera
elsdenii DSM 20460]
gi|341822813|emb|CCC73737.1| ribosomal RNA small subunit methyltransferase A [Megasphaera
elsdenii DSM 20460]
Length = 283
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 17/237 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ + D +A AA + EGD VLEIGPG G+LT L GA V A+E D H++
Sbjct: 25 KKLGQNFLIRHAVVDDIADAAGIGEGDPVLEIGPGIGTLTQALAETGAAVTAVELDDHLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++V+ D ++ I M + F V AN+P+ I+T +I +
Sbjct: 85 PVLDKTLEHYDNVRVVHGDILRIDIEEVM--------NHQPFT-VCANLPYYITTPIIMK 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E A R+V EP + Y +++ V +Y++P+ F++ F P
Sbjct: 136 LLEQKLPIKRIVVMVQKEVAERMVAEPGHKI--YGALSVSVQYYTKPQMLFEISPKCFMP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
P+V +AVV+ ++Q P V K FF +V +AF +RK +L++ S E
Sbjct: 194 APEVTSAVVSMDVRQK---PPVDLLDEKRFFQVVKAAFQQRRKTFANALKNTGMSKE 247
>gi|255657480|ref|ZP_05402889.1| dimethyladenosine transferase [Clostridium difficile QCD-23m63]
gi|296449075|ref|ZP_06890865.1| dimethyladenosine transferase [Clostridium difficile NAP08]
gi|296879898|ref|ZP_06903871.1| dimethyladenosine transferase [Clostridium difficile NAP07]
gi|296262168|gb|EFH08973.1| dimethyladenosine transferase [Clostridium difficile NAP08]
gi|296429187|gb|EFH15061.1| dimethyladenosine transferase [Clostridium difficile NAP07]
Length = 289
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 139/246 (56%), Gaps = 10/246 (4%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITGGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + ++ +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLENTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ E K PR F PQP VD+ V+ ++ Y V + + FF V ++F +RK L
Sbjct: 180 CDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEEIFFKTVKASFGQRRKTLL 238
Query: 340 KSLQHL 345
SL L
Sbjct: 239 NSLGGL 244
>gi|372324025|ref|ZP_09518614.1| Dimethyladenosine transferase [Oenococcus kitaharae DSM 17330]
gi|366982833|gb|EHN58232.1| Dimethyladenosine transferase [Oenococcus kitaharae DSM 17330]
Length = 292
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 134/249 (53%), Gaps = 17/249 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQ+++++ + Q+A AA+ + D VLEIGPG GSLT L A V+A E D+ ++
Sbjct: 26 KRFGQNFLIDLNVLRQIAELAAINQDDTVLEIGPGIGSLTEQLAKAAGQVVAYEIDKKLI 85
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E A D +KV+ +D +K S+F KS K+VAN+P+ I+T ++
Sbjct: 86 PVLAETLAPYDNVKVINQDILKAD-----FSVFHDAKS----LKIVANLPYYITTPILFY 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
LL F + +++Q+E A RL + + + EY +++ + + ++ + +VPR+ F P
Sbjct: 137 LLGEKLAFKSITVMMQKEVAARL-QAQVGSKEYGELSLAIQYRTDVTIRLQVPRSAFMPS 195
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-----I 351
P VD+AVV K + A K FS++ +AF +RK L +L + I
Sbjct: 196 PNVDSAVVMLTPKAG--FKAFPYEKELFSLIKAAFAHRRKSLVNNLLFRYGKTDENRARI 253
Query: 352 EKALGDVGL 360
E++L D G
Sbjct: 254 EQSLTDSGF 262
>gi|119485101|ref|ZP_01619486.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106]
gi|119457329|gb|EAW38454.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106]
Length = 273
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 137/260 (52%), Gaps = 14/260 (5%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
+PRK QH++ + +Q+ AA + D +LEIGPGTG LT LL TVLA+E D+
Sbjct: 3 YPRKQFAQHWLRSPTALNQIVNAAQLSTDDHLLEIGPGTGVLTERLLTLAQTVLAVEIDR 62
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ + +F D +LQ D + + ++ + + KVVANIP+NI+ +
Sbjct: 63 DLCKKLVPKFGKRDNFLLLQGDILTLRLEDYLQDFPNFQNPN----KVVANIPYNITGPI 118
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFK 287
+++LL P + +VLL+Q+E A RL P RT + +++ V + ++ E+
Sbjct: 119 LEKLLGNIAQPNPQPYDLMVLLVQKEVAQRLCAGPGSRT--FGALSVRVQYLAKCEFICD 176
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
VP F+P PKVD+AVV + + +YPA S K V F KRKMLR +LQ +
Sbjct: 177 VPSKAFYPPPKVDSAVVRLR-PRCIEYPA-ESPKHLEMAVKLGFASKRKMLRNNLQSVID 234
Query: 348 SLEIEKALGDVGLPATAAAD 367
++ + L + + A A+
Sbjct: 235 RDQLTQILEQLEVNPQARAE 254
>gi|383937790|ref|ZP_09991026.1| dimethyladenosine transferase [Streptococcus pseudopneumoniae
SK674]
gi|383715280|gb|EID71250.1| dimethyladenosine transferase [Streptococcus pseudopneumoniae
SK674]
Length = 290
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 138/268 (51%), Gaps = 15/268 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA-FNGKRKM 337
Y + F VPRT F P P VD+A++ K+ + D ++FF VS A F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL--KMVRRPDPAVAVEDENFFFKVSKASFTHRRKT 236
Query: 338 LRKSLQHLCTSLE-----IEKALGDVGL 360
L +L E + KAL GL
Sbjct: 237 LWNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|417847132|ref|ZP_12493101.1| dimethyladenosine transferase [Streptococcus mitis SK1073]
gi|339457161|gb|EGP69739.1| dimethyladenosine transferase [Streptococcus mitis SK1073]
Length = 290
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVAKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|166363194|ref|YP_001655467.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843]
gi|166085567|dbj|BAG00275.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843]
Length = 268
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 139/260 (53%), Gaps = 23/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + + LL+Q+E A RLV PS T Y +++ + + ++ ++ V
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLADCQWICDV 171
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
P F P P+VD+AV+ + P S +F S ++S F +RKMLR +L++
Sbjct: 172 PWRAFSPPPRVDSAVIQLLPRV---LPNNVSNAAFLSTLISWGFANRRKMLRNNLKNCLD 228
Query: 348 SLEIEKALGDVGLPATAAAD 367
S + + L + + A A+
Sbjct: 229 SDRLSQILTQLEINPLARAE 248
>gi|307707668|ref|ZP_07644148.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261]
gi|307616280|gb|EFN95473.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K ++ H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVNLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|168484284|ref|ZP_02709236.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00]
gi|417697154|ref|ZP_12346331.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47368]
gi|418092588|ref|ZP_12729727.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44452]
gi|418108527|ref|ZP_12745562.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41410]
gi|418110959|ref|ZP_12747977.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49447]
gi|418176775|ref|ZP_12813365.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41437]
gi|418219702|ref|ZP_12846366.1| dimethyladenosine transferase [Streptococcus pneumoniae NP127]
gi|418222017|ref|ZP_12848669.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47751]
gi|418239499|ref|ZP_12866049.1| dimethyladenosine transferase [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419423771|ref|ZP_13963983.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43264]
gi|419460813|ref|ZP_14000739.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02270]
gi|419463113|ref|ZP_14003015.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02714]
gi|419489744|ref|ZP_14029492.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44386]
gi|172042507|gb|EDT50553.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00]
gi|332199410|gb|EGJ13487.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47368]
gi|353762388|gb|EHD42948.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44452]
gi|353777054|gb|EHD57528.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41410]
gi|353781131|gb|EHD61580.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49447]
gi|353840401|gb|EHE20467.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41437]
gi|353872794|gb|EHE52657.1| dimethyladenosine transferase [Streptococcus pneumoniae NP127]
gi|353874065|gb|EHE53923.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47751]
gi|353891883|gb|EHE71634.1| dimethyladenosine transferase [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379529572|gb|EHY94816.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02270]
gi|379529646|gb|EHY94889.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02714]
gi|379585215|gb|EHZ50073.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43264]
gi|379585843|gb|EHZ50698.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44386]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLSI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|431309298|ref|ZP_19508679.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1626]
gi|431745300|ref|ZP_19534149.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2134]
gi|431768200|ref|ZP_19556640.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1321]
gi|430579227|gb|ELB17750.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1626]
gi|430610736|gb|ELB47867.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2134]
gi|430629584|gb|ELB65980.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1321]
Length = 294
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 10/231 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAKHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + E+V+++Q+E A R + L T Y ++I V +Y E F VP+T F P
Sbjct: 141 HFLESDLVVDELVVMMQKEVADR-ISAELGTKAYGSLSIAVQYYMEASLAFIVPKTVFVP 199
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
QP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 200 QPNVDSAILKLTRR---DIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|307709722|ref|ZP_07646173.1| dimethyladenosine transferase [Streptococcus mitis SK564]
gi|307619424|gb|EFN98549.1| dimethyladenosine transferase [Streptococcus mitis SK564]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 139/268 (51%), Gaps = 15/268 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA-FNGKRKM 337
Y + F VPRT F P P VD+A++ K+ + + V ++FF VS A F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL--KMVRRPEPAVVVEDENFFFKVSKASFTHRRKT 236
Query: 338 LRKSLQHLCTSLE-----IEKALGDVGL 360
L +L E + KAL GL
Sbjct: 237 LWNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|322377595|ref|ZP_08052085.1| dimethyladenosine transferase [Streptococcus sp. M334]
gi|321281360|gb|EFX58370.1| dimethyladenosine transferase [Streptococcus sp. M334]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPALPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|406579179|ref|ZP_11054426.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD6S]
gi|404452592|gb|EJZ99767.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD6S]
Length = 262
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ S K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQSF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV + FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDEQFFFKVSKASFTHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|414159212|ref|ZP_11415502.1| ribosomal RNA small subunit methyltransferase A [Streptococcus sp.
F0441]
gi|410868209|gb|EKS16177.1| ribosomal RNA small subunit methyltransferase A [Streptococcus sp.
F0441]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV + FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDEQLFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKEKLTKALDQAGL 264
>gi|225857560|ref|YP_002739071.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031]
gi|387627140|ref|YP_006063316.1| dimethyladenosine transferase [Streptococcus pneumoniae INV104]
gi|410477325|ref|YP_006744084.1| dimethyladenosine transferase [Streptococcus pneumoniae gamPNI0373]
gi|417694844|ref|ZP_12344030.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47901]
gi|444383250|ref|ZP_21181443.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS8106]
gi|444385935|ref|ZP_21184003.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS8203]
gi|444387496|ref|ZP_21185516.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS125219]
gi|444390959|ref|ZP_21188872.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS70012]
gi|444393248|ref|ZP_21190904.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS81218]
gi|444395784|ref|ZP_21193325.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0002]
gi|444398693|ref|ZP_21196173.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0006]
gi|444399506|ref|ZP_21196968.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0007]
gi|444401782|ref|ZP_21198963.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0008]
gi|444404189|ref|ZP_21201149.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0009]
gi|444406703|ref|ZP_21203373.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0010]
gi|444408993|ref|ZP_21205594.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0076]
gi|444412583|ref|ZP_21208904.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0153]
gi|444414939|ref|ZP_21211187.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0199]
gi|444417720|ref|ZP_21213738.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0360]
gi|444420771|ref|ZP_21216539.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0427]
gi|444422151|ref|ZP_21217814.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0446]
gi|254807890|sp|C1CMT3.1|RSMA_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|225725962|gb|ACO21814.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031]
gi|301794926|emb|CBW37388.1| dimethyladenosine transferase [Streptococcus pneumoniae INV104]
gi|332199997|gb|EGJ14071.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47901]
gi|406370270|gb|AFS43960.1| dimethyladenosine transferase [Streptococcus pneumoniae gamPNI0373]
gi|444248903|gb|ELU55402.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS8203]
gi|444250274|gb|ELU56756.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS8106]
gi|444252709|gb|ELU59170.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS125219]
gi|444255117|gb|ELU61473.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS70012]
gi|444257425|gb|ELU63762.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0002]
gi|444258770|gb|ELU65091.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0006]
gi|444261515|gb|ELU67817.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS81218]
gi|444267657|gb|ELU73552.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0008]
gi|444268565|gb|ELU74411.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0007]
gi|444272050|gb|ELU77788.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0010]
gi|444274545|gb|ELU80192.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0153]
gi|444277262|gb|ELU82776.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0009]
gi|444280442|gb|ELU85809.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0076]
gi|444280864|gb|ELU86211.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0199]
gi|444282961|gb|ELU88182.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0360]
gi|444283937|gb|ELU89108.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0427]
gi|444288530|gb|ELU93423.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0446]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPVPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|306820341|ref|ZP_07453980.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551670|gb|EFM39622.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 287
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 132/228 (57%), Gaps = 7/228 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++N I D++ +A + D+VLEIG G G+LT L V+A+E D++++
Sbjct: 24 KSLGQNFLINENILDKIIESADISSDDVVLEIGTGIGTLTQRLCENAKKVIAVEIDRNLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E ++ D + ++ +D +K I + +L +K KVVAN+P+ I+T +I +
Sbjct: 84 PILNETLSNYDNITIINKDILKTDINEELKNLSINQK-----IKVVANLPYYITTPIIMK 138
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
+L +VL+LQ+E A R+ S T +Y ++I V +Y + KVP+++F P+
Sbjct: 139 VLEDKVNVDCMVLMLQKEVADRM-NASPSTKDYGSLSIAVQYYCDTAIVCKVPKSSFIPE 197
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P VD+ V+ + + + +++ FF +V +F+ +RK + SL +
Sbjct: 198 PNVDSLVLKLVVNEKRNVD-ISNEDLFFKIVRGSFSKRRKTILNSLSN 244
>gi|149012426|ref|ZP_01833457.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75]
gi|418190218|ref|ZP_12826729.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47373]
gi|147763482|gb|EDK70418.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75]
gi|353853048|gb|EHE33032.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47373]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|270292088|ref|ZP_06198303.1| dimethyladenosine transferase [Streptococcus sp. M143]
gi|270279616|gb|EFA25458.1| dimethyladenosine transferase [Streptococcus sp. M143]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 141/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV + FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPDPAVAVEDEQFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + EI+ KAL GL
Sbjct: 238 WNNLTGYFGKTEEIKDKLTKALDQAGL 264
>gi|431452570|ref|ZP_19514076.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1630]
gi|431760765|ref|ZP_19549359.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E3346]
gi|430585031|gb|ELB23336.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1630]
gi|430623435|gb|ELB60127.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E3346]
Length = 294
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAKHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESNLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|358465602|ref|ZP_09175538.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 058
str. F0407]
gi|357065411|gb|EHI75622.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 058
str. F0407]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPNPVVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTDEVKDKLTKALDQAGL 264
>gi|331265645|ref|YP_004325275.1| dimethyladenosine transferase [Streptococcus oralis Uo5]
gi|326682317|emb|CBY99934.1| dimethyladenosine transferase [Streptococcus oralis Uo5]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 138/268 (51%), Gaps = 15/268 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPGLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA-FNGKRKM 337
Y + F VPRT F P P VD+A++ K+ + D ++FF VS A F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL--KMVRRPDPAVAVEDENFFFKVSKASFTHRRKT 236
Query: 338 LRKSLQHLCTSLE-----IEKALGDVGL 360
L +L E + KAL GL
Sbjct: 237 LWNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|119511388|ref|ZP_01630500.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414]
gi|119463933|gb|EAW44858.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414]
Length = 275
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 138/253 (54%), Gaps = 24/253 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
PRKS QH++ + + D + AA Q D VLEIGPGTG LT LL +++A+E D
Sbjct: 4 PRKSFAQHWLKSEKALDAIIKAAECHQSDDRVLEIGPGTGILTRRLLPLVRSLVAVEIDF 63
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ + ++ + +LQ DF+ + SH+ ++ + KVVANIP+NI+ +
Sbjct: 64 DLCKQLAKQLGKKENFLLLQGDFLTLDLPSHLAPFPNFQQPN----KVVANIPYNITGPI 119
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I++LL P + F +VLL+Q+E A RL P RT + +++ V + ++ E+
Sbjct: 120 IEKLLGTIANPNPEPFDSIVLLVQKEVADRLYAHPGSRT--FGALSVRVQYLADCEFICT 177
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ---- 343
VP F+P PKVD+AVV + + + PA+ K F ++V F+ KRKMLR +LQ
Sbjct: 178 VPAGAFYPPPKVDSAVVRLR-PRTIETPALNPRK-FENLVKLGFSAKRKMLRNNLQSVVE 235
Query: 344 -----HLCTSLEI 351
HL LEI
Sbjct: 236 RDRLTHLLEQLEI 248
>gi|322387082|ref|ZP_08060693.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
gi|419843010|ref|ZP_14366336.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
gi|321142069|gb|EFX37563.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
gi|385703259|gb|EIG40383.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
Length = 290
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 141/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A V + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEVDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + EI+ KAL GL
Sbjct: 238 WNNLTGYFGKTEEIKDKLTKALDQAGL 264
>gi|389680946|ref|ZP_10172292.1| dimethyladenosine transferase [Pseudomonas chlororaphis O6]
gi|388555235|gb|EIM18482.1| dimethyladenosine transferase [Pseudomonas chlororaphis O6]
Length = 272
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 129/240 (53%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + GD +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSINAKSGDRMLEIGPGQGALTEGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA D + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGRDNFSLHQGDALKFD--------FNSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLQNASLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L +S EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERIVREAFNQRRKTLRNTLKALLSSAEIEAA 238
>gi|407459112|ref|YP_006737215.1| dimethyladenosine transferase [Chlamydia psittaci M56]
gi|405786625|gb|AFS25370.1| dimethyladenosine transferase [Chlamydia psittaci M56]
Length = 278
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 143/272 (52%), Gaps = 21/272 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ QL + E C L + K G +VVAN+P++++T ++
Sbjct: 80 FE-------ETLKQLLIHLEITDACKYPLSQL----QDKGWQGKGRVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L + + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVRYAFKVSPGC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
FFP+P+V +AVV +K TK FFS+ +AF +RK+L +L+ L +
Sbjct: 187 FFPKPQVSSAVVHMTVKDRFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKERVF 245
Query: 353 KALGDVGLPATAAADYKFPITLPSTEYTLFME 384
+AL + +D P TL +Y E
Sbjct: 246 EALSQLNF-----SDKTRPETLSLDDYLKLFE 272
>gi|257880094|ref|ZP_05659747.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933]
gi|257882326|ref|ZP_05661979.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502]
gi|257885523|ref|ZP_05665176.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501]
gi|257891185|ref|ZP_05670838.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410]
gi|260560297|ref|ZP_05832473.1| dimethyladenosine transferase [Enterococcus faecium C68]
gi|293563099|ref|ZP_06677565.1| dimethyladenosine transferase [Enterococcus faecium E1162]
gi|293567525|ref|ZP_06678870.1| dimethyladenosine transferase [Enterococcus faecium E1071]
gi|294623379|ref|ZP_06702238.1| dimethyladenosine transferase [Enterococcus faecium U0317]
gi|314940231|ref|ZP_07847404.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04]
gi|314941710|ref|ZP_07848589.1| dimethyladenosine transferase [Enterococcus faecium TX0133C]
gi|314947646|ref|ZP_07851055.1| dimethyladenosine transferase [Enterococcus faecium TX0082]
gi|314950632|ref|ZP_07853712.1| dimethyladenosine transferase [Enterococcus faecium TX0133A]
gi|314992501|ref|ZP_07857922.1| dimethyladenosine transferase [Enterococcus faecium TX0133B]
gi|314996345|ref|ZP_07861398.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01]
gi|383329585|ref|YP_005355469.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium Aus0004]
gi|389869436|ref|YP_006376859.1| dimethyladenosine transferase [Enterococcus faecium DO]
gi|406579751|ref|ZP_11054979.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD4E]
gi|406582031|ref|ZP_11057164.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD3E]
gi|406584156|ref|ZP_11059192.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD2E]
gi|406589636|ref|ZP_11064066.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD1E]
gi|410936181|ref|ZP_11368050.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD5E]
gi|415899786|ref|ZP_11551688.1| dimethyladenosine transferase [Enterococcus faecium E4453]
gi|416129473|ref|ZP_11597315.1| dimethyladenosine transferase [Enterococcus faecium E4452]
gi|424792638|ref|ZP_18218851.1| dimethyladenosine transferase [Enterococcus faecium V689]
gi|424797797|ref|ZP_18223349.1| dimethyladenosine transferase [Enterococcus faecium S447]
gi|424826317|ref|ZP_18251227.1| dimethyladenosine transferase [Enterococcus faecium R501]
gi|424857847|ref|ZP_18281931.1| dimethyladenosine transferase [Enterococcus faecium R499]
gi|424868584|ref|ZP_18292326.1| dimethyladenosine transferase [Enterococcus faecium R497]
gi|424950886|ref|ZP_18366027.1| dimethyladenosine transferase [Enterococcus faecium R496]
gi|424955329|ref|ZP_18370171.1| dimethyladenosine transferase [Enterococcus faecium R494]
gi|424958791|ref|ZP_18373416.1| dimethyladenosine transferase [Enterococcus faecium R446]
gi|424961240|ref|ZP_18375695.1| dimethyladenosine transferase [Enterococcus faecium P1986]
gi|424964841|ref|ZP_18378903.1| dimethyladenosine transferase [Enterococcus faecium P1190]
gi|424967192|ref|ZP_18380900.1| dimethyladenosine transferase [Enterococcus faecium P1140]
gi|424971619|ref|ZP_18385046.1| dimethyladenosine transferase [Enterococcus faecium P1139]
gi|424973772|ref|ZP_18387037.1| dimethyladenosine transferase [Enterococcus faecium P1137]
gi|424977210|ref|ZP_18390242.1| dimethyladenosine transferase [Enterococcus faecium P1123]
gi|424981331|ref|ZP_18394067.1| dimethyladenosine transferase [Enterococcus faecium ERV99]
gi|424984071|ref|ZP_18396623.1| dimethyladenosine transferase [Enterococcus faecium ERV69]
gi|424989491|ref|ZP_18401755.1| dimethyladenosine transferase [Enterococcus faecium ERV38]
gi|424991190|ref|ZP_18403358.1| dimethyladenosine transferase [Enterococcus faecium ERV26]
gi|424994634|ref|ZP_18406565.1| dimethyladenosine transferase [Enterococcus faecium ERV168]
gi|424999349|ref|ZP_18410976.1| dimethyladenosine transferase [Enterococcus faecium ERV165]
gi|425000618|ref|ZP_18412174.1| dimethyladenosine transferase [Enterococcus faecium ERV161]
gi|425005034|ref|ZP_18416312.1| dimethyladenosine transferase [Enterococcus faecium ERV102]
gi|425008612|ref|ZP_18419682.1| dimethyladenosine transferase [Enterococcus faecium ERV1]
gi|425011953|ref|ZP_18422810.1| dimethyladenosine transferase [Enterococcus faecium E422]
gi|425013454|ref|ZP_18424184.1| dimethyladenosine transferase [Enterococcus faecium E417]
gi|425017052|ref|ZP_18427588.1| dimethyladenosine transferase [Enterococcus faecium C621]
gi|425020708|ref|ZP_18431003.1| dimethyladenosine transferase [Enterococcus faecium C497]
gi|425023743|ref|ZP_18433844.1| dimethyladenosine transferase [Enterococcus faecium C1904]
gi|425032859|ref|ZP_18437868.1| dimethyladenosine transferase [Enterococcus faecium 515]
gi|425035079|ref|ZP_18439931.1| dimethyladenosine transferase [Enterococcus faecium 514]
gi|425038908|ref|ZP_18443486.1| dimethyladenosine transferase [Enterococcus faecium 513]
gi|425042389|ref|ZP_18446729.1| dimethyladenosine transferase [Enterococcus faecium 511]
gi|425045798|ref|ZP_18449867.1| dimethyladenosine transferase [Enterococcus faecium 510]
gi|425049049|ref|ZP_18452925.1| dimethyladenosine transferase [Enterococcus faecium 509]
gi|425053266|ref|ZP_18456819.1| dimethyladenosine transferase [Enterococcus faecium 506]
gi|425061909|ref|ZP_18465104.1| dimethyladenosine transferase [Enterococcus faecium 503]
gi|427395584|ref|ZP_18888506.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
durans FB129-CNAB-4]
gi|430823892|ref|ZP_19442461.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0120]
gi|430832227|ref|ZP_19450274.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0333]
gi|430845022|ref|ZP_19462918.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1050]
gi|430847357|ref|ZP_19465196.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1133]
gi|430856532|ref|ZP_19474218.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1392]
gi|430863763|ref|ZP_19480208.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1573]
gi|430866973|ref|ZP_19482199.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1574]
gi|430962011|ref|ZP_19487294.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1576]
gi|431012223|ref|ZP_19490014.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1578]
gi|431238538|ref|ZP_19503407.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1622]
gi|431260006|ref|ZP_19505512.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1623]
gi|431381582|ref|ZP_19511184.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1627]
gi|431517039|ref|ZP_19516429.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1634]
gi|431550005|ref|ZP_19519318.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1731]
gi|431744653|ref|ZP_19533521.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2071]
gi|431749707|ref|ZP_19538444.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2297]
gi|431755639|ref|ZP_19544288.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2883]
gi|431771385|ref|ZP_19559769.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1644]
gi|431774182|ref|ZP_19562494.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2369]
gi|431777305|ref|ZP_19565559.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2560]
gi|431780009|ref|ZP_19568198.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E4389]
gi|431783088|ref|ZP_19571212.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E6012]
gi|431786549|ref|ZP_19574561.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E6045]
gi|447913526|ref|YP_007394938.1| Dimethyladenosine transferase [Enterococcus faecium NRRL B-2354]
gi|257814322|gb|EEV43080.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933]
gi|257817984|gb|EEV45312.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502]
gi|257821379|gb|EEV48509.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501]
gi|257827545|gb|EEV54171.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410]
gi|260073642|gb|EEW61968.1| dimethyladenosine transferase [Enterococcus faecium C68]
gi|291589768|gb|EFF21571.1| dimethyladenosine transferase [Enterococcus faecium E1071]
gi|291597226|gb|EFF28418.1| dimethyladenosine transferase [Enterococcus faecium U0317]
gi|291605013|gb|EFF34481.1| dimethyladenosine transferase [Enterococcus faecium E1162]
gi|313589488|gb|EFR68333.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01]
gi|313592961|gb|EFR71806.1| dimethyladenosine transferase [Enterococcus faecium TX0133B]
gi|313597179|gb|EFR76024.1| dimethyladenosine transferase [Enterococcus faecium TX0133A]
gi|313599482|gb|EFR78325.1| dimethyladenosine transferase [Enterococcus faecium TX0133C]
gi|313640551|gb|EFS05131.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04]
gi|313645887|gb|EFS10467.1| dimethyladenosine transferase [Enterococcus faecium TX0082]
gi|364089195|gb|EHM31908.1| dimethyladenosine transferase [Enterococcus faecium E4453]
gi|364094366|gb|EHM36551.1| dimethyladenosine transferase [Enterococcus faecium E4452]
gi|378939279|gb|AFC64351.1| Ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium Aus0004]
gi|388534685|gb|AFK59877.1| dimethyladenosine transferase [Enterococcus faecium DO]
gi|402917354|gb|EJX38145.1| dimethyladenosine transferase [Enterococcus faecium V689]
gi|402920262|gb|EJX40788.1| dimethyladenosine transferase [Enterococcus faecium S447]
gi|402924475|gb|EJX44684.1| dimethyladenosine transferase [Enterococcus faecium R501]
gi|402927843|gb|EJX47767.1| dimethyladenosine transferase [Enterococcus faecium R499]
gi|402932118|gb|EJX51651.1| dimethyladenosine transferase [Enterococcus faecium R496]
gi|402934396|gb|EJX53752.1| dimethyladenosine transferase [Enterococcus faecium R494]
gi|402936705|gb|EJX55865.1| dimethyladenosine transferase [Enterococcus faecium R497]
gi|402938941|gb|EJX57903.1| dimethyladenosine transferase [Enterococcus faecium R446]
gi|402944288|gb|EJX62713.1| dimethyladenosine transferase [Enterococcus faecium P1986]
gi|402945546|gb|EJX63886.1| dimethyladenosine transferase [Enterococcus faecium P1190]
gi|402954856|gb|EJX72438.1| dimethyladenosine transferase [Enterococcus faecium P1140]
gi|402957957|gb|EJX75314.1| dimethyladenosine transferase [Enterococcus faecium P1137]
gi|402958570|gb|EJX75877.1| dimethyladenosine transferase [Enterococcus faecium P1139]
gi|402963924|gb|EJX80761.1| dimethyladenosine transferase [Enterococcus faecium ERV99]
gi|402966725|gb|EJX83338.1| dimethyladenosine transferase [Enterococcus faecium P1123]
gi|402968605|gb|EJX85077.1| dimethyladenosine transferase [Enterococcus faecium ERV38]
gi|402969844|gb|EJX86225.1| dimethyladenosine transferase [Enterococcus faecium ERV69]
gi|402977472|gb|EJX93287.1| dimethyladenosine transferase [Enterococcus faecium ERV26]
gi|402979288|gb|EJX94964.1| dimethyladenosine transferase [Enterococcus faecium ERV165]
gi|402979501|gb|EJX95164.1| dimethyladenosine transferase [Enterococcus faecium ERV168]
gi|402987776|gb|EJY02819.1| dimethyladenosine transferase [Enterococcus faecium ERV102]
gi|402988811|gb|EJY03786.1| dimethyladenosine transferase [Enterococcus faecium ERV161]
gi|402992058|gb|EJY06791.1| dimethyladenosine transferase [Enterococcus faecium ERV1]
gi|402995063|gb|EJY09547.1| dimethyladenosine transferase [Enterococcus faecium E422]
gi|403001043|gb|EJY15124.1| dimethyladenosine transferase [Enterococcus faecium E417]
gi|403005692|gb|EJY19382.1| dimethyladenosine transferase [Enterococcus faecium C621]
gi|403008655|gb|EJY22149.1| dimethyladenosine transferase [Enterococcus faecium C497]
gi|403008889|gb|EJY22371.1| dimethyladenosine transferase [Enterococcus faecium C1904]
gi|403011746|gb|EJY25034.1| dimethyladenosine transferase [Enterococcus faecium 515]
gi|403018106|gb|EJY30813.1| dimethyladenosine transferase [Enterococcus faecium 513]
gi|403018875|gb|EJY31528.1| dimethyladenosine transferase [Enterococcus faecium 514]
gi|403023651|gb|EJY35889.1| dimethyladenosine transferase [Enterococcus faecium 511]
gi|403026237|gb|EJY38238.1| dimethyladenosine transferase [Enterococcus faecium 510]
gi|403029182|gb|EJY40952.1| dimethyladenosine transferase [Enterococcus faecium 509]
gi|403030971|gb|EJY42622.1| dimethyladenosine transferase [Enterococcus faecium 506]
gi|403040190|gb|EJY51286.1| dimethyladenosine transferase [Enterococcus faecium 503]
gi|404455082|gb|EKA01951.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD4E]
gi|404458693|gb|EKA05101.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD3E]
gi|404464549|gb|EKA10077.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD2E]
gi|404470539|gb|EKA15164.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD1E]
gi|410735422|gb|EKQ77334.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD5E]
gi|425723573|gb|EKU86460.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
durans FB129-CNAB-4]
gi|430441925|gb|ELA51996.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0120]
gi|430480218|gb|ELA57406.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0333]
gi|430495856|gb|ELA71976.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1050]
gi|430537300|gb|ELA77644.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1133]
gi|430544292|gb|ELA84330.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1392]
gi|430547823|gb|ELA87737.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1573]
gi|430551023|gb|ELA90793.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1574]
gi|430555921|gb|ELA95449.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1576]
gi|430559734|gb|ELA99058.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1578]
gi|430572239|gb|ELB11101.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1622]
gi|430576745|gb|ELB15370.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1623]
gi|430581944|gb|ELB20382.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1627]
gi|430585593|gb|ELB23872.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1634]
gi|430590693|gb|ELB28747.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1731]
gi|430605396|gb|ELB42801.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2071]
gi|430611294|gb|ELB48396.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2297]
gi|430616861|gb|ELB53756.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2883]
gi|430633449|gb|ELB69615.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1644]
gi|430634584|gb|ELB70702.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2369]
gi|430639417|gb|ELB75290.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2560]
gi|430641090|gb|ELB76910.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E4389]
gi|430645442|gb|ELB80957.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E6045]
gi|430646110|gb|ELB81605.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E6012]
gi|445189235|gb|AGE30877.1| Dimethyladenosine transferase [Enterococcus faecium NRRL B-2354]
Length = 294
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAKHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESDLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|430853691|ref|ZP_19471418.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1258]
gi|430540244|gb|ELA80454.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1258]
Length = 294
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAKHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESDLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|386727501|ref|YP_006193827.1| protein RsmA [Paenibacillus mucilaginosus K02]
gi|384094626|gb|AFH66062.1| protein RsmA [Paenibacillus mucilaginosus K02]
Length = 305
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 6/227 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ + +++ AA + + LEIGPG G+LT L A A V A+E DQ +
Sbjct: 33 KKSLGQNFLIDTNVLNKIVGAAELDKTKGALEIGPGIGALTQQLAKAAARVTAVEIDQRL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++E A V+ D ++ + LF+ S VVAN+P+ ++T +I
Sbjct: 93 LPLLKETLAPYPHASVIHGDVLQVSLN----DLFKEHFSECSGVSVVANLPYYVTTPIIM 148
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ EY ++I V +Y EPE VP T F P
Sbjct: 149 KLLEEKLPLENIVVMIQKEVAERMAA-GPGGKEYGSLSIAVQYYCEPEIVAIVPHTVFIP 207
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
QP VD+AV+ K++Q V FF ++ ++F +RK + +L
Sbjct: 208 QPNVDSAVIKLKVRQQPPV-DVEDEDFFFDVIQASFTQRRKTIYNNL 253
>gi|419777823|ref|ZP_14303725.1| dimethyladenosine transferase [Streptococcus oralis SK10]
gi|383187576|gb|EIC80020.1| dimethyladenosine transferase [Streptococcus oralis SK10]
Length = 290
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ S K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQSF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENLFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTDEVKDKLTKALDQAGL 264
>gi|293364728|ref|ZP_06611445.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
gi|307702974|ref|ZP_07639921.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
gi|291316178|gb|EFE56614.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
gi|307623367|gb|EFO02357.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
Length = 290
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 TERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + EI+ KAL GL
Sbjct: 238 WNNLTGYFGKTEEIKDKLTKALDQAGL 264
>gi|261208234|ref|ZP_05922907.1| dimethyladenosine transferase [Enterococcus faecium TC 6]
gi|289565965|ref|ZP_06446404.1| dimethyladenosine transferase [Enterococcus faecium D344SRF]
gi|294615973|ref|ZP_06695800.1| dimethyladenosine transferase [Enterococcus faecium E1636]
gi|294617634|ref|ZP_06697262.1| dimethyladenosine transferase [Enterococcus faecium E1679]
gi|430850564|ref|ZP_19468324.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1185]
gi|431682661|ref|ZP_19524624.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1904]
gi|260077491|gb|EEW65209.1| dimethyladenosine transferase [Enterococcus faecium TC 6]
gi|289162249|gb|EFD10110.1| dimethyladenosine transferase [Enterococcus faecium D344SRF]
gi|291591159|gb|EFF22841.1| dimethyladenosine transferase [Enterococcus faecium E1636]
gi|291596098|gb|EFF27363.1| dimethyladenosine transferase [Enterococcus faecium E1679]
gi|430535432|gb|ELA75840.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1185]
gi|430598567|gb|ELB36304.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1904]
Length = 294
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAKHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESDLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEANLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|257899761|ref|ZP_05679414.1| dimethyladenosine transferase [Enterococcus faecium Com15]
gi|257837673|gb|EEV62747.1| dimethyladenosine transferase [Enterococcus faecium Com15]
Length = 294
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLAMHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F+ KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIIHQDILKTDLSTAVRETFQEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESDLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|420144739|ref|ZP_14652227.1| Ribosomal RNA small subunit methyltransferase A [Lactococcus
garvieae IPLA 31405]
gi|391856191|gb|EIT66740.1| Ribosomal RNA small subunit methyltransferase A [Lactococcus
garvieae IPLA 31405]
Length = 296
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 8/229 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITATAELSDQINVIEIGPGIGSLTQYLLEEAAEVMAFEIDKTL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D +++ D +K +R H+ + K+ KVVAN+P+ I+T ++
Sbjct: 87 IPILEETLAPYDNFQLVNADVLKVDMREHIKNF----KNPDLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y E + F VPRT F
Sbjct: 143 HLIESKIPFTEFVVMMQKEVADRIAAKPS--TKAYGSLSIAVQYYMEAQVAFTVPRTVFV 200
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P P VD+A++ ++ AV FF + S F +RK L +LQ
Sbjct: 201 PAPNVDSAILKMTRREQP-LVAVKDEDFFFKTMHSTFVHRRKTLMNNLQ 248
>gi|15903841|ref|NP_359391.1| dimethyladenosine transferase [Streptococcus pneumoniae R6]
gi|116515767|ref|YP_817204.1| dimethyladenosine transferase [Streptococcus pneumoniae D39]
gi|168492040|ref|ZP_02716183.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04]
gi|418077200|ref|ZP_12714431.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47502]
gi|418194530|ref|ZP_12831018.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47439]
gi|419496158|ref|ZP_14035874.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47461]
gi|421237074|ref|ZP_15693668.1| dimethyladenosine transferase [Streptococcus pneumoniae 2071004]
gi|421266960|ref|ZP_15717839.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR27]
gi|421269197|ref|ZP_15720063.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR95]
gi|421303656|ref|ZP_15754319.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17484]
gi|33516933|sp|Q8DND3.1|RSMA_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|122277950|sp|Q04II4.1|RSMA_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|15459484|gb|AAL00602.1| Dimethyladenosine transferase [Streptococcus pneumoniae R6]
gi|116076343|gb|ABJ54063.1| dimethyladenosine transferase [Streptococcus pneumoniae D39]
gi|183573705|gb|EDT94233.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04]
gi|353746146|gb|EHD26809.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47502]
gi|353857041|gb|EHE37006.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47439]
gi|379593178|gb|EHZ57992.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47461]
gi|395601035|gb|EJG61188.1| dimethyladenosine transferase [Streptococcus pneumoniae 2071004]
gi|395866056|gb|EJG77189.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR27]
gi|395867062|gb|EJG78187.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR95]
gi|395899571|gb|EJH10511.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17484]
Length = 290
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|430820541|ref|ZP_19439169.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0045]
gi|430826749|ref|ZP_19444922.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0164]
gi|430829333|ref|ZP_19447427.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0269]
gi|430925659|ref|ZP_19485414.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1575]
gi|431204849|ref|ZP_19500726.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1620]
gi|431765763|ref|ZP_19554265.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E4215]
gi|430439416|gb|ELA49768.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0045]
gi|430444690|gb|ELA54511.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0164]
gi|430480993|gb|ELA58160.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0269]
gi|430553709|gb|ELA93393.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1575]
gi|430571372|gb|ELB10288.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1620]
gi|430627613|gb|ELB64100.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E4215]
Length = 294
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAKHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESDLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|347520976|ref|YP_004778547.1| dimethyladenosine transferase [Lactococcus garvieae ATCC 49156]
gi|385832339|ref|YP_005870114.1| dimethyladenosine transferase [Lactococcus garvieae Lg2]
gi|343179544|dbj|BAK57883.1| dimethyladenosine transferase [Lactococcus garvieae ATCC 49156]
gi|343181492|dbj|BAK59830.1| dimethyladenosine transferase [Lactococcus garvieae Lg2]
Length = 296
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 8/229 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITATAELSDQVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKTL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D +++ D +K +R H+ + K+ KVVAN+P+ I+T ++
Sbjct: 87 IPILEETLAPYDNFQLVNADVLKVDMREHIKNF----KNPDLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y E + F VPRT F
Sbjct: 143 HLIESKIPFTEFVVMMQKEVADRIAAKPS--TKAYGSLSIAVQYYMEAQVAFTVPRTVFV 200
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P P VD+A++ ++ AV FF + S F +RK L +LQ
Sbjct: 201 PAPNVDSAILKMTRREQP-LVAVKDEDFFFKTMHSTFVHRRKTLMNNLQ 248
>gi|385261471|ref|ZP_10039593.1| dimethyladenosine transferase [Streptococcus sp. SK643]
gi|385192999|gb|EIF40387.1| dimethyladenosine transferase [Streptococcus sp. SK643]
Length = 290
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AECAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIKNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFRVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|284048769|ref|YP_003399108.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM
20731]
gi|283952990|gb|ADB47793.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM
20731]
Length = 284
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 144/256 (56%), Gaps = 17/256 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L++ G +K GQ++++N ++ +A A V GD+VLEIGPG G+LT L GA V
Sbjct: 16 LDTFGLRAKKKFGQNFLINEQVVRGIAREAQVGPGDLVLEIGPGIGTLTQALAETGAQVK 75
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
++E D+ ++ ++ + D ++++ D +K + ++ + R + V AN+P+
Sbjct: 76 SVEIDRTLLPVLAKTLEGYDNVEIVPGDVLKVDLG----AVTKHRPFT-----VAANLPY 126
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I LL +V+++Q+E A R++ S +Y P+++ + +YS P
Sbjct: 127 YITTPIIFALLEEDLPLQRLVVMVQKEVAERMIA-SPGGKDYGPLSLALQYYSRPRLAIP 185
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQ--ATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
VP +F P P+VD+ VV + ++ A D PA K FF +V +AF+ +RKML L++L
Sbjct: 186 VPARDFMPAPRVDSMVVVCEKREHPAVDVPA----KVFFRVVKAAFSQRRKMLSNCLKNL 241
Query: 346 CTSLE-IEKALGDVGL 360
S + +++ L + G+
Sbjct: 242 GLSGDQVQQLLAEAGI 257
>gi|307705634|ref|ZP_07642485.1| dimethyladenosine transferase [Streptococcus mitis SK597]
gi|307620810|gb|EFN99895.1| dimethyladenosine transferase [Streptococcus mitis SK597]
Length = 290
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDESFFFKISKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|291562910|emb|CBL41726.1| dimethyladenosine transferase [butyrate-producing bacterium SS3/4]
Length = 288
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 140/253 (55%), Gaps = 13/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ +AA + + D VLEIGPG G++T L V+A+E D+++
Sbjct: 22 QKKFGQNFLIDTHVLEKIISAAGITKNDCVLEIGPGIGTMTQYLAENAGHVVAVEIDRNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D + V+ ED ++ I+ +L E KVVAN+P+ I+T +I
Sbjct: 82 IPILKETLADYDNVTVINEDILRVDIK----ALAEEYNGGKPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L G + +++Q+E A R+ E + +Y +++ V +Y+EPE VP F P
Sbjct: 137 GLFESGVPIDNITVMVQKEVADRMKE-GPGSKDYGALSLAVQYYAEPEIVANVPPNCFIP 195
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHL----CTSLE 350
+P V +AV+ +L + + P V F ++ ++FN +RK L+ L + T +
Sbjct: 196 RPNVGSAVI--RLTRHKEMPVEVKDPALMFKIIRASFNQRRKTLQNGLGNAPELPYTKEQ 253
Query: 351 IEKALGDVGLPAT 363
I A+ ++GL T
Sbjct: 254 IAAAIAEMGLTPT 266
>gi|257868862|ref|ZP_05648515.1| dimethyladenosine transferase [Enterococcus gallinarum EG2]
gi|357049741|ref|ZP_09110957.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
saccharolyticus 30_1]
gi|257803026|gb|EEV31848.1| dimethyladenosine transferase [Enterococcus gallinarum EG2]
gi|355382870|gb|EHG29963.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
saccharolyticus 30_1]
Length = 300
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 6/229 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A AA+ + V+E+GPG G+LT L VLA E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVATAAIDDQTNVIEVGPGIGALTEQLAKHARQVLAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ A ++V+ +D ++ + + + F + KVVAN+P+ I+T ++
Sbjct: 85 IPVLQDTLAPYSNIQVIHQDVLQADLSTMIREAFTDERP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L E+V+++Q+E A R + T Y ++I V +Y E E F VP+T F P
Sbjct: 141 HFLESQAPIQEMVVMMQKEVADR-ISAVPGTKAYGSLSIAVQYYMEAELAFIVPKTVFVP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
QP VD+A++ ++AT VT K FF + +AF +RK L +LQ+
Sbjct: 200 QPNVDSAILKLT-RRATPAVEVTDEKEFFKLTKAAFQLRRKTLWNNLQN 247
>gi|332982498|ref|YP_004463939.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON]
gi|332700176|gb|AEE97117.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON]
Length = 299
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 130/235 (55%), Gaps = 15/235 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K++GQ++++N E + + A + D VLEIGPG G+LT L A V A+E D+
Sbjct: 24 PNKAMGQNFLINKEALNAIVNGADISAEDEVLEIGPGLGTLTLKLSERAAHVTAVEVDKR 83
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ L+++ + + +++ DF+ + + + A VVAN+P+ I+T V+
Sbjct: 84 IIPLLKQTLQDVGNVSIIEGDFLNPMVAEEIKECLAGKS-----AIVVANLPYYITTPVL 138
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTS----EYRPINIFVNFYSEPEYKFKVP 289
++ + VL++Q+E A R+V +P R S +Y ++I V +Y +P+ +VP
Sbjct: 139 MDIIENYIMIKRAVLMMQKEVAYRVVAQPGSRLSGSVKDYGVLSISVQYYMDPQILLEVP 198
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSL 342
R++F P P VD+AVV + D PAV + FFS+V +AF +RK L +L
Sbjct: 199 RSDFLPSPDVDSAVVRLDRR---DKPAVDVQDERMFFSLVKAAFGQRRKTLFNAL 250
>gi|315611880|ref|ZP_07886799.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296]
gi|315316058|gb|EFU64091.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296]
Length = 290
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKEKLTKALDQAGL 264
>gi|430833896|ref|ZP_19451906.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0679]
gi|430836845|ref|ZP_19454822.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0680]
gi|430839877|ref|ZP_19457814.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0688]
gi|430859339|ref|ZP_19476951.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1552]
gi|430485796|gb|ELA62677.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0679]
gi|430488168|gb|ELA64861.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0680]
gi|430490326|gb|ELA66858.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0688]
gi|430543700|gb|ELA83755.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1552]
Length = 294
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQLAKHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESDLVVDELVVMIQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DIPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|260889782|ref|ZP_05901045.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254]
gi|260860388|gb|EEX74888.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254]
Length = 282
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 135/252 (53%), Gaps = 11/252 (4%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
Y K ++ +K+ GQ+++ +S ++D++ A + E VLEIGPG G LT L+
Sbjct: 8 YQNKNKYFENENHKAKKNNGQNFLNDSNLSDEILDVANIDEKTEVLEIGPGLGFLTEKLI 67
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
+ A E D ++ + ++F + K++ +DF++ ++ FE +K+ K
Sbjct: 68 ENSKFLTAFEIDDDLIPFLNKKFENKQNFKLIHQDFMEADLK----KFFEDKKN----VK 119
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
VVANIP+ I++ +I +LL + E+ L++Q+E A R+ +P + + V FY
Sbjct: 120 VVANIPYYITSPIINKLLEYRENIDEIYLMVQKEVAERIASQP--HSKNMSLLTHAVQFY 177
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+E EY F VP+ F P PKVD+A + K+ + Y + S + +F + AF+ KRK +
Sbjct: 178 AEAEYLFTVPKEKFDPVPKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIA 237
Query: 340 KSLQHLCTSLEI 351
+L L S ++
Sbjct: 238 NNLTKLGFSKDV 249
>gi|421276742|ref|ZP_15727562.1| dimethyladenosine transferase [Streptococcus mitis SPAR10]
gi|395876023|gb|EJG87099.1| dimethyladenosine transferase [Streptococcus mitis SPAR10]
Length = 290
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + S E++ KAL GL
Sbjct: 238 WNNLTGYFGKSEEVKDKLTKALDQAGL 264
>gi|389571477|ref|ZP_10161572.1| dimethyladenosine transferase [Bacillus sp. M 2-6]
gi|388428877|gb|EIL86667.1| dimethyladenosine transferase [Bacillus sp. M 2-6]
Length = 292
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 141/257 (54%), Gaps = 13/257 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEITDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K +R + E + + VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVR----KVIEEQFADCKEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAVPS--SKEYNSLSIAVQFYTEAKTVMVVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
PQP VD+AV+ +++ PAV+ FF ++ ++F +RK L +L + +
Sbjct: 197 PQPNVDSAVIKLTVRET---PAVSVDNDTFFFQLIRASFGQRRKTLMNNLMNNLPDGKKH 253
Query: 353 KALGDVGLPATAAADYK 369
KA+ + L TA D K
Sbjct: 254 KAIIEEAL-VTAEVDGK 269
>gi|418977283|ref|ZP_13525111.1| dimethyladenosine transferase [Streptococcus mitis SK575]
gi|383350157|gb|EID28052.1| dimethyladenosine transferase [Streptococcus mitis SK575]
Length = 290
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|443635067|ref|ZP_21119237.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443345120|gb|ELS59187.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 292
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 129/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENEAFFFQLIKASFAQRRK 237
>gi|417939642|ref|ZP_12582931.1| dimethyladenosine transferase [Streptococcus oralis SK313]
gi|343389837|gb|EGV02421.1| dimethyladenosine transferase [Streptococcus oralis SK313]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLHDFDNVTVVNEDILKVDLAQHIKNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + EI+ KAL GL
Sbjct: 238 WNNLTGYFGKTEEIKDKLTKALDQAGL 264
>gi|296329543|ref|ZP_06872029.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305672740|ref|YP_003864411.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296153286|gb|EFG94149.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305410983|gb|ADM36101.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 292
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT + V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQIAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMTVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENEAFFFQLIKASFAQRRK 237
>gi|282899539|ref|ZP_06307503.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505]
gi|281195418|gb|EFA70351.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505]
Length = 281
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 136/249 (54%), Gaps = 18/249 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K QH++ + + + + AA Q D +LEIGPGTG LT LL ++LA+E D+
Sbjct: 4 PQKQFAQHWLRSEKALNSIVKAAECQVNDRILEIGPGTGILTKRLLPLVDSLLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL--FERRKSSSGFAKVVANIPFNISTD 232
+ L+ ++ + + +LQ DF+ I S + + F+R+ KVVANIP+NI+
Sbjct: 64 LCELLAKKLGARENFLLLQGDFLTLGIASQLTAFPKFQRQN------KVVANIPYNITGP 117
Query: 233 VIKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
+I++LL P F +VLL+Q+E A RL +P R + +++ V + +E E+
Sbjct: 118 IIEKLLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRN--FGALSVRVQYLAECEFIC 175
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
VP + F+P PKVD+AVV L + + A K +MV F KRKMLR +LQ +
Sbjct: 176 TVPASAFYPPPKVDSAVVRL-LPRNMEIGA-NDPKLLENMVKLGFGCKRKMLRNNLQSVI 233
Query: 347 TSLEIEKAL 355
+ K L
Sbjct: 234 DRESLTKLL 242
>gi|125974582|ref|YP_001038492.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
gi|256004056|ref|ZP_05429041.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
gi|281419107|ref|ZP_06250124.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
gi|385780020|ref|YP_005689185.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313]
gi|419721365|ref|ZP_14248529.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum AD2]
gi|419726857|ref|ZP_14253877.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum YS]
gi|125714807|gb|ABN53299.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
gi|255991979|gb|EEU02076.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
gi|281407256|gb|EFB37517.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
gi|316941700|gb|ADU75734.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313]
gi|380769822|gb|EIC03722.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum YS]
gi|380782535|gb|EIC12169.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum AD2]
Length = 284
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 137/256 (53%), Gaps = 15/256 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I ++ A + E D+V+EIGPG GS+T L V+A+E D+ ++
Sbjct: 18 KSLGQNFLIDDNIVKRIVDVAEITEKDLVIEIGPGVGSMTVELAKRAGKVVAVEIDKRLI 77
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ + + ++ +D + +I + SG KVVAN+P+ I+T +I +
Sbjct: 78 PALEDNLGEFSNVDIINKDIMDVNINEF--------RGESGNVKVVANLPYYITTPIIMK 129
Query: 237 LLPMG-DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL D +V ++Q+E A R+V S +Y +++ V +Y++PE F VP F P
Sbjct: 130 LLEENNDNIDIMVFMVQKEVAQRMV-ASPGKKDYGALSVAVQYYTKPEKAFDVPPHCFVP 188
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL----CTSLEI 351
QP+VD+ V+ K+ + T + FF++V +AF +RK L +L + + EI
Sbjct: 189 QPEVDSTVIKLKVNE-TPPVKLMDKDYFFTVVKAAFGQRRKTLVNALHNFKALGKSKEEI 247
Query: 352 EKALGDVGLPATAAAD 367
++ L +G+ A +
Sbjct: 248 KEILKKLGIDENARGE 263
>gi|418966551|ref|ZP_13518282.1| dimethyladenosine transferase [Streptococcus mitis SK616]
gi|383347129|gb|EID25131.1| dimethyladenosine transferase [Streptococcus mitis SK616]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKEKLTKALDQAGL 264
>gi|289167168|ref|YP_003445435.1| dimethyladenosine transferase [Streptococcus mitis B6]
gi|342164663|ref|YP_004769302.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus pseudopneumoniae IS7493]
gi|288906733|emb|CBJ21567.1| dimethyladenosine transferase [Streptococcus mitis B6]
gi|341934545|gb|AEL11442.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus pseudopneumoniae IS7493]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|417935966|ref|ZP_12579283.1| dimethyladenosine transferase [Streptococcus infantis X]
gi|343402875|gb|EGV15380.1| dimethyladenosine transferase [Streptococcus infantis X]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDNRLVPILADTLRDFDNVTVVNEDILKVDLPQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGISFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + S E++ KAL GL
Sbjct: 238 WNNLTGYFGKSEEVKDKLTKALDQAGL 264
>gi|407979101|ref|ZP_11159923.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. HYC-10]
gi|407414317|gb|EKF35970.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. HYC-10]
Length = 292
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 130/232 (56%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEITDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K +R M F K VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVRKVMEEQFADCKE----VMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAAPS--SKEYNSLSIAVQFYTEAKTVMVVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+AV+ +++ PAV+ FF ++ ++F +RK L +L +
Sbjct: 197 PQPNVDSAVIKLTVRET---PAVSVDNDAFFFQLIRASFGQRRKTLMNNLMN 245
>gi|419441930|ref|ZP_13981965.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13224]
gi|379555426|gb|EHZ20495.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13224]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|322375823|ref|ZP_08050334.1| dimethyladenosine transferase [Streptococcus sp. C300]
gi|321279091|gb|EFX56133.1| dimethyladenosine transferase [Streptococcus sp. C300]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 141/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV + FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDEQFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTDEVKEKLTKALDQAGL 264
>gi|405760142|ref|YP_006700738.1| dimethyladenosine transferase [Streptococcus pneumoniae SPNA45]
gi|404277031|emb|CCM07524.1| dimethyladenosine transferase [Streptococcus pneumoniae SPNA45]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|417003907|ref|ZP_11942793.1| dimethyladenosine transferase [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478267|gb|EGC81386.1| dimethyladenosine transferase [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 280
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 138/244 (56%), Gaps = 10/244 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ D++ AA V G+ V+EIGPG G++T + V+AIE D ++
Sbjct: 23 KSLGQNFLVDKNFVDKIVDAADVS-GENVIEIGPGIGTITYEMAKVAKKVVAIEIDDSLI 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D ++ ED +K + + F + F KVV+N+P+ I+T +I++
Sbjct: 82 PIIEENMVEFDNFDLIHEDILKADLEKIVAEEF----AGESF-KVVSNLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L+ ++ +++Q+E A R++ + + EY +++FV +YS+ + VP++ F PQ
Sbjct: 137 LVTSNLPCKDMTIMVQKEVADRML-ATEKDKEYSSLSVFVKYYSDAKKVTNVPKSVFMPQ 195
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALG 356
PK+D+ V+ +L++ TD V K FS++ + FN +RK + SL + ++ A
Sbjct: 196 PKIDSTVLKLELRKYTD--DVDEAK-LFSLIHAGFNKRRKTILNSLSDVVEKDKLRLAFE 252
Query: 357 DVGL 360
+G+
Sbjct: 253 KLGI 256
>gi|421207467|ref|ZP_15664515.1| dimethyladenosine transferase [Streptococcus pneumoniae 2090008]
gi|421230589|ref|ZP_15687250.1| dimethyladenosine transferase [Streptococcus pneumoniae 2061376]
gi|421234893|ref|ZP_15691509.1| dimethyladenosine transferase [Streptococcus pneumoniae 2061617]
gi|421250241|ref|ZP_15706695.1| dimethyladenosine transferase [Streptococcus pneumoniae 2082239]
gi|421292856|ref|ZP_15743588.1| dimethyladenosine transferase [Streptococcus pneumoniae GA56348]
gi|421312738|ref|ZP_15763337.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58981]
gi|395573039|gb|EJG33631.1| dimethyladenosine transferase [Streptococcus pneumoniae 2090008]
gi|395593093|gb|EJG53346.1| dimethyladenosine transferase [Streptococcus pneumoniae 2061376]
gi|395599510|gb|EJG59676.1| dimethyladenosine transferase [Streptococcus pneumoniae 2061617]
gi|395612805|gb|EJG72841.1| dimethyladenosine transferase [Streptococcus pneumoniae 2082239]
gi|395891417|gb|EJH02415.1| dimethyladenosine transferase [Streptococcus pneumoniae GA56348]
gi|395908063|gb|EJH18947.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58981]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|428208445|ref|YP_007092798.1| dimethyladenosine transferase [Chroococcidiopsis thermalis PCC
7203]
gi|428010366|gb|AFY88929.1| dimethyladenosine transferase [Chroococcidiopsis thermalis PCC
7203]
Length = 271
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 143/258 (55%), Gaps = 14/258 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK QH++ + + D++ AA +Q+ D +LEIGPGTG LT LL ++V+A+E D+ +
Sbjct: 5 RKQFAQHWLKSEKALDRIVQAAEIQQSDRILEIGPGTGVLTRRLLPLASSVVAVEIDRDL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ ++ +LQ DF+ + + + L +K + KVVANIP+NI+ +++
Sbjct: 65 CQLLTQKLKKVENFLLLQGDFLNLDLATLLAPLPNFQKPN----KVVANIPYNITGPILE 120
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+LL P + + +VLL+Q+E A RL +P + + +++ V + + E VP
Sbjct: 121 KLLGTIAEPNPEPYESIVLLVQKEVADRLYAKPE--SKAFGALSVRVQYLAACEQICIVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P PKVD+AVV +L+ T + K ++V F+ KRKMLR +L+ + S
Sbjct: 179 AGAFQPPPKVDSAVV--RLRPRTLSTVANNPKQLEALVKIGFSAKRKMLRNNLKAIVDSD 236
Query: 350 EIEKALGDVGLPATAAAD 367
+ L ++ + A A+
Sbjct: 237 RLNHLLQELNINPQARAE 254
>gi|317473695|ref|ZP_07932982.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA]
gi|316898816|gb|EFV20843.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA]
Length = 286
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 137/250 (54%), Gaps = 13/250 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++S + +++ AA + + D VLEIGPG G++T L V+A+E D ++
Sbjct: 22 QKKFGQNFLIDSHVLEKIIDAANITKDDFVLEIGPGIGTMTQYLSEHAREVMAVEIDHNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D ++VL ED +K I +K+ KVVAN+P+ I+T +I
Sbjct: 82 IPILKETLAGYDNVEVLNEDILKVDIGK-----IAEKKNQGRPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + +++Q+E A R+ + T +Y +++ V FY+EP VP F P
Sbjct: 137 GLFEKNVPMDSLTVMVQKEVAQRM-QAGPGTKDYGALSLAVQFYAEPYIVANVPPNCFMP 195
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT----SLE 350
+PKV +AV+ L + D P V + + FS++ ++FN +RK L+ + + T +
Sbjct: 196 RPKVGSAVIC--LTRYKDMPVKVKNEQLMFSIIRASFNQRRKTLQNGINNSSTLHFSKEQ 253
Query: 351 IEKALGDVGL 360
+ AL +GL
Sbjct: 254 VVDALDKMGL 263
>gi|419782840|ref|ZP_14308637.1| dimethyladenosine transferase [Streptococcus oralis SK610]
gi|383182766|gb|EIC75315.1| dimethyladenosine transferase [Streptococcus oralis SK610]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAGIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTDEVKDKLTKALDQAGL 264
>gi|350264142|ref|YP_004875449.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597029|gb|AEP84817.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 292
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT + V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQIAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMTVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENEAFFFQLIKASFAQRRK 237
>gi|270290912|ref|ZP_06197136.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
gi|304386409|ref|ZP_07368742.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
gi|418068507|ref|ZP_12705789.1| dimethyladenosine transferase [Pediococcus acidilactici MA18/5M]
gi|427441756|ref|ZP_18925413.1| dimethyladenosine transferase [Pediococcus lolii NGRI 0510Q]
gi|270280972|gb|EFA26806.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
gi|304327766|gb|EFL94993.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
gi|357539243|gb|EHJ23262.1| dimethyladenosine transferase [Pediococcus acidilactici MA18/5M]
gi|425786945|dbj|GAC46201.1| dimethyladenosine transferase [Pediococcus lolii NGRI 0510Q]
Length = 297
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 132/240 (55%), Gaps = 10/240 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G +KSLGQ+++ + + + AA + +GD V+E+GPG GSLT + VL
Sbjct: 17 LEKYGLSAKKSLGQNFLTDPNVLVNIVDAAEINDGDDVIEVGPGIGSLTEQIAKRAHQVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ+++ ++ E A D + ++ ED +K ++ + F+ + K+VAN+P+
Sbjct: 77 AFEIDQNLIPVLDETLAPYDNITIINEDVLKVNVNEVVAEHFDGQHP----IKLVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T ++K + +++V+++Q+E A RL +P EY +++ V + + + +F
Sbjct: 133 YITTPILKSFMASSLPIAKMVVMMQKEVADRLTAQPG--DKEYGSLSVVVQYRMQTQVEF 190
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
VP F PQPKVD+A+V+ ++ D+P + FF V F +RK L ++Q L
Sbjct: 191 TVPARVFVPQPKVDSAIVSLTPRK--DWPVYPADDRDFFKTVHGCFMHRRKNLWNNMQGL 248
>gi|417915987|ref|ZP_12559580.1| dimethyladenosine transferase [Streptococcus mitis bv. 2 str. SK95]
gi|342831610|gb|EGU65924.1| dimethyladenosine transferase [Streptococcus mitis bv. 2 str. SK95]
Length = 290
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDHAGL 264
>gi|421077159|ref|ZP_15538130.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans JBW45]
gi|392524547|gb|EIW47702.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans JBW45]
Length = 280
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 129/228 (56%), Gaps = 14/228 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + +GD VLEIGPG G+LT L AGA V A+E D+ ++
Sbjct: 25 KKLGQNFLIDEHVVQSIVKAANITQGDAVLEIGPGIGTLTQGLAEAGAAVTAVEIDRRLI 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + ++V+ D ++ I ++ ++ KVVAN+P+ I+T +I
Sbjct: 85 EVLAKTLEGYENIRVVHGDILRIDI---------GKEVAAPRYKVVANLPYYITTPIIMG 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A R+V P T +Y +++ V +Y++PE F VP +F P
Sbjct: 136 LLEAHMPVDILVTMVQKEVAQRMVAVPG--TKDYGSLSVAVQYYTKPEIMFVVPPASFIP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P VD+AV+ +++ P + + FF +V +AF +RK L +L+
Sbjct: 194 PPAVDSAVIRCTVREKP--PVEVNERIFFRVVKAAFAQRRKTLSNTLK 239
>gi|228473773|ref|ZP_04058518.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC
33624]
gi|228274794|gb|EEK13617.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC
33624]
Length = 258
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 120/236 (50%), Gaps = 13/236 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K LGQH++ N I Q+A + D VLEIGPGTG LT LL V IE D
Sbjct: 8 PKKHLGQHFLTNLSIAQQIANTLSEVGYDRVLEIGPGTGVLTQFLLGKNIEVFVIEIDTE 67
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V + + F+ + +L EDF+K I SH S FA ++ N P+NIS+ ++
Sbjct: 68 SVTYLEQHFSKLKG-HILGEDFLKFDIVSHF--------SKKPFA-IIGNFPYNISSQIV 117
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL + D E + Q+E A R+ E + + Y +++ + + EY F V F
Sbjct: 118 FKLLEIRDFVPEFSGMFQKEVAERICEKA-GSKTYGILSVLTQAFYDTEYLFTVSEHVFN 176
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
P PKV + V+ +LK+ +Y K FF +V +AF +RK LR SL+ E
Sbjct: 177 PPPKVKSGVI--RLKRKENYSLPCEEKLFFQIVKTAFGQRRKTLRNSLKSFLIEKE 230
>gi|424779909|ref|ZP_18206795.1| Dimethyladenosine transferase [Catellicoccus marimammalium
M35/04/3]
gi|422843448|gb|EKU27885.1| Dimethyladenosine transferase [Catellicoccus marimammalium
M35/04/3]
Length = 294
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 6/239 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I +AA A + + ++E+GPG G+LT L +G VLA E D +
Sbjct: 24 KKSLGQNFLTEPNILRHIAATAELNKESQIIEVGPGIGALTEHLARSGGEVLAFEIDGRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ ED +K ++R +F+ K +VVAN+P+ I+T ++
Sbjct: 84 LPILEETLAPYDNVTVVNEDVLKVNLREIASQVFDLEKP----IQVVANLPYYITTPIMM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L ++V+++Q+E A R ++ ++ Y ++I V +Y E F VP+T F P
Sbjct: 140 HFLESDLPVEKMVVMMQKEVAER-IQAKPKSKAYGSLSIAVQYYMEASIAFIVPKTAFVP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
QP VD+A++ + +Q V FF +V +AF +RK L +L H E KA
Sbjct: 199 QPNVDSAILKLERRQQP-LVEVKDEDFFFKVVKAAFQLRRKTLWNNLLHTFGKDEATKA 256
>gi|407002087|gb|EKE18935.1| dimethyladenosine transferase [uncultured bacterium]
Length = 265
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 136/238 (57%), Gaps = 10/238 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + E+ ++ +A + + D+V+EIGPG G+LT +L V+AIE D +
Sbjct: 5 KKSLGQNFLKDDEVLSRIIESANLSQDDVVIEIGPGQGALTELLAKNCRKVVAIELDDRL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E+F + ++ +D +K ++ +++ +E ++G+ KVVANIP+ I+ +I+
Sbjct: 65 IPILQEKFKDNKNVDIIHDDILKLNL-PELVTGYEL--PTTGY-KVVANIPYYITAPIIR 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L EV+L++Q+E A R+ + + + + V +Y + EY F V + +F P
Sbjct: 121 LFLETKIPPREVILMVQKEVAERI---TAKAGAMSILAVSVQYYGKSEYLFSVSKESFDP 177
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
PKVD+A++ TK FF +V + F+ KRK L + +L L+IEK
Sbjct: 178 VPKVDSAIIRITHNMEHGEKNAVETKKFFRIVKAGFSAKRKTL---VNNLSNGLQIEK 232
>gi|402309572|ref|ZP_10828565.1| dimethyladenosine transferase [Eubacterium sp. AS15]
gi|400372539|gb|EJP25483.1| dimethyladenosine transferase [Eubacterium sp. AS15]
Length = 287
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 131/228 (57%), Gaps = 7/228 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++N I D++ +A + D+VLEIG G G+LT L V+A+E D++++
Sbjct: 24 KSLGQNFLINENILDKIIESADISSDDVVLEIGTGIGTLTQRLCENAKKVIAVEIDRNLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E ++ D + ++ +D +K I + +L +K KVVAN+P+ I+T +I +
Sbjct: 84 PILNETLSNYDNITIINKDILKTDINEELKNLSINQK-----IKVVANLPYYITTPIIMK 138
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
+L +VL+LQ+E A R+ S T +Y ++I V +Y + KVP+++F P+
Sbjct: 139 VLEDKVNVDCMVLMLQKEVAERM-NASPSTKDYGSLSIAVQYYCDTAIVCKVPKSSFIPE 197
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P VD+ V+ + + +++ FF +V +F+ +RK + SL +
Sbjct: 198 PNVDSLVLKLVVNEKRKVD-ISNEDLFFKIVRGSFSKRRKTILNSLSN 244
>gi|443328640|ref|ZP_21057235.1| dimethyladenosine transferase [Xenococcus sp. PCC 7305]
gi|442791771|gb|ELS01263.1| dimethyladenosine transferase [Xenococcus sp. PCC 7305]
Length = 282
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 141/261 (54%), Gaps = 19/261 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQH++ + + DQ+A AA + D +LEIGPGTG LT LL + +VLA+E D+++
Sbjct: 10 KKRFGQHWLQSDRVLDQIANAAELNSSDRILEIGPGTGVLTRRLLGSVDSVLAVEIDKYL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHM--LSLFERRKSSSGFAKVVANIPFNISTDV 233
+ ++F +LQ DF+ I + LF+++ K+VANIP+NI+ +
Sbjct: 70 CKKLTKKFQEYQNFLLLQGDFLALDIPELVKPFPLFQKQ------TKIVANIPYNITGLI 123
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFK 287
+++LL P + +VLL+Q+E RL PS T EY +++ + + + E
Sbjct: 124 LEKLLGSISQPNTKDYESIVLLIQKEVGDRLTANPS--TKEYGALSVRIQYLASCEKICD 181
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
VP F+P PKVD+ VV +L+ T + + ++V F+ +RKMLR +L+ +
Sbjct: 182 VPAKAFYPPPKVDSVVV--RLRPHTLSNPAENVRQLETLVKLGFSSRRKMLRNNLKSVIE 239
Query: 348 SLEIEKALGDVGL-PATAAAD 367
++ L + + P + A D
Sbjct: 240 VDDLNNLLEKLDINPQSRAED 260
>gi|418167628|ref|ZP_12804280.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17971]
gi|353828130|gb|EHE08274.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17971]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFIHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALNQAGL 264
>gi|417687466|ref|ZP_12336736.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41301]
gi|418160723|ref|ZP_12797421.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17227]
gi|419521935|ref|ZP_14061529.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05245]
gi|332072170|gb|EGI82656.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41301]
gi|353820906|gb|EHE01088.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17227]
gi|379537415|gb|EHZ02599.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05245]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLSI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFIHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|347726994|gb|AEP19855.1| dimethyladenosine transferase [Exiguobacterium sp. EPVM]
Length = 292
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 140/253 (55%), Gaps = 17/253 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ AA + E VLEIGPG GSLT V+A+E DQ +
Sbjct: 22 KKSLGQNFLIDLNILNKIVDAAELGEASGVLEIGPGIGSLTEQSAKRAKKVVALEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ + + + V+ D ++ IR + ER S G VVAN+P+ ++T +
Sbjct: 82 LPILEDTMSPYPHVHVIHGDALELDIR----DIVEREFFSQGIEDISVVANLPYYVTTPI 137
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
I +LL F +V+++Q+E A R+ +P T Y ++I + +Y+E F VP++
Sbjct: 138 IMRLLESQIKFRSLVMMIQKEVAERIGAKPG--TKAYGSLSIAIQYYAEANVSFIVPKSV 195
Query: 293 FFPQPKVDAAVVTFKL--KQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-QHLCTS- 348
F P P VD+AV+T K+ K A D V FF + ++F +RK + +L HL
Sbjct: 196 FMPAPNVDSAVITLKMRPKPAVD---VKDEAFFFEIARASFAQRRKTILNNLTNHLGKDK 252
Query: 349 -LEIEKALGDVGL 360
+EIE+ LG+ G+
Sbjct: 253 KMEIERFLGEAGI 265
>gi|293573156|ref|ZP_06684093.1| dimethyladenosine transferase [Enterococcus faecium E980]
gi|430840547|ref|ZP_19458471.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1007]
gi|431064382|ref|ZP_19493729.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1604]
gi|431123784|ref|ZP_19498497.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1613]
gi|431593545|ref|ZP_19521874.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1861]
gi|431738452|ref|ZP_19527395.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1972]
gi|431741696|ref|ZP_19530598.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2039]
gi|291606794|gb|EFF36179.1| dimethyladenosine transferase [Enterococcus faecium E980]
gi|430495034|gb|ELA71250.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1007]
gi|430567416|gb|ELB06500.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1613]
gi|430569023|gb|ELB08053.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1604]
gi|430591422|gb|ELB29460.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1861]
gi|430597180|gb|ELB34983.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1972]
gi|430601198|gb|ELB38808.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2039]
Length = 294
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLAMHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIIHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESDLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|306830179|ref|ZP_07463363.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249]
gi|304427705|gb|EFM30801.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLIKALDQAGL 264
>gi|425055499|ref|ZP_18458973.1| dimethyladenosine transferase [Enterococcus faecium 505]
gi|403033931|gb|EJY45414.1| dimethyladenosine transferase [Enterococcus faecium 505]
Length = 294
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLAMHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIIHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESDLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|227552435|ref|ZP_03982484.1| dimethyladenosine transferase [Enterococcus faecium TX1330]
gi|257888325|ref|ZP_05667978.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733]
gi|257896785|ref|ZP_05676438.1| dimethyladenosine transferase [Enterococcus faecium Com12]
gi|293378583|ref|ZP_06624746.1| dimethyladenosine transferase [Enterococcus faecium PC4.1]
gi|424762165|ref|ZP_18189686.1| dimethyladenosine transferase [Enterococcus faecalis TX1337RF]
gi|431040118|ref|ZP_19492625.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1590]
gi|431751113|ref|ZP_19539806.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2620]
gi|431758091|ref|ZP_19546719.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E3083]
gi|431763552|ref|ZP_19552101.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E3548]
gi|227178447|gb|EEI59419.1| dimethyladenosine transferase [Enterococcus faecium TX1330]
gi|257824379|gb|EEV51311.1| dimethyladenosine transferase [Enterococcus faecium 1,141,733]
gi|257833350|gb|EEV59771.1| dimethyladenosine transferase [Enterococcus faecium Com12]
gi|292642912|gb|EFF61059.1| dimethyladenosine transferase [Enterococcus faecium PC4.1]
gi|402425293|gb|EJV57442.1| dimethyladenosine transferase [Enterococcus faecium TX1337RF]
gi|430561970|gb|ELB01223.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1590]
gi|430615930|gb|ELB52862.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2620]
gi|430617754|gb|ELB54618.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E3083]
gi|430621925|gb|ELB58666.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E3548]
Length = 294
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAQIDERTNVIEVGPGIGALTEQLAMHAKQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ +D +K + + + F KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYDNVTIIHQDILKTDLSTAVRETFHEELP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + E+V+++Q+E A R+ EP T Y ++I V +Y E F VP+T F
Sbjct: 141 HFLESDLVVDELVVMMQKEVADRISAEPG--TKAYGSLSIAVQYYMEASLAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ + D PA VT K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILKLTRR---DTPAVEVTDEKAFFRLTKAAFQQRRKTLWNNLQH 247
>gi|307710852|ref|ZP_07647279.1| dimethyladenosine transferase [Streptococcus mitis SK321]
gi|307617297|gb|EFN96470.1| dimethyladenosine transferase [Streptococcus mitis SK321]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLIKALDQAGL 264
>gi|385260045|ref|ZP_10038199.1| dimethyladenosine transferase [Streptococcus sp. SK140]
gi|385192719|gb|EIF40115.1| dimethyladenosine transferase [Streptococcus sp. SK140]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 141/268 (52%), Gaps = 15/268 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVLILADTLRDFDNVTVVNEDILKVDLAKHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA-FNGKRKM 337
Y + F VPRT F P P VD+A++ K+ + + +SFF VS A F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL--KMVRRPEPAVAVEDESFFFKVSKASFTHRRKT 236
Query: 338 LRKSLQ-HLCTSLEIE----KALGDVGL 360
L +L + + EI+ KAL GL
Sbjct: 237 LWNNLTGYFGKTEEIKDKLTKALNQAGL 264
>gi|419780530|ref|ZP_14306377.1| dimethyladenosine transferase [Streptococcus oralis SK100]
gi|383185128|gb|EIC77627.1| dimethyladenosine transferase [Streptococcus oralis SK100]
Length = 290
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A ++A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEIMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLVQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + EI+ KAL GL
Sbjct: 238 WNNLTGYFGKTEEIKDKLTKALDQAGL 264
>gi|403382814|ref|ZP_10924871.1| dimethyladenosine transferase [Paenibacillus sp. JC66]
Length = 294
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 130/227 (57%), Gaps = 6/227 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA ++E + VLEIGPG G+LT L V+A+E DQ +
Sbjct: 27 KKSLGQNFLVDQNILARIVDAANLREDEGVLEIGPGIGALTEKLAREAGRVVAVEIDQRL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++R+ + ++ V+ D +K ++ +F++ + VVAN+P+ ++T ++
Sbjct: 87 LPILRDTLSVYPKVTVIHGDVLKLSLK----EIFDQHFAKDQPVSVVANLPYYVTTPIVM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL ++V+++Q+E A R+ S EY ++I V +Y EP + VPR F P
Sbjct: 143 KLLEEKLPLKQIVVMIQKEVAERMTA-SPGGKEYGSLSIAVQYYCEPSVELIVPRQAFVP 201
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
QP VD+AV+ K+++ V FF +V ++F +RK + +L
Sbjct: 202 QPNVDSAVIKLKVREKPPV-DVDDEAFFFKVVQASFGQRRKTIANNL 247
>gi|148985565|ref|ZP_01818754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71]
gi|387758157|ref|YP_006065136.1| dimethyladenosine transferase [Streptococcus pneumoniae OXC141]
gi|418232966|ref|ZP_12859551.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07228]
gi|418237420|ref|ZP_12863985.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19690]
gi|147922285|gb|EDK73406.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71]
gi|301800746|emb|CBW33394.1| dimethyladenosine transferase [Streptococcus pneumoniae OXC141]
gi|353885649|gb|EHE65437.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07228]
gi|353891115|gb|EHE70873.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19690]
gi|429320126|emb|CCP33457.1| dimethyladenosine transferase [Streptococcus pneumoniae SPN034183]
gi|429321945|emb|CCP35431.1| dimethyladenosine transferase [Streptococcus pneumoniae SPN994039]
gi|429323765|emb|CCP31472.1| dimethyladenosine transferase [Streptococcus pneumoniae SPN994038]
Length = 290
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AECAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|302388630|ref|YP_003824451.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
16646]
gi|302199258|gb|ADL06828.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
16646]
Length = 282
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 142/258 (55%), Gaps = 10/258 (3%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G P K LGQH++++ ++ AA + E D VLEIGPG G LT L V+A+EK
Sbjct: 11 GIRPSKRLGQHFLIDEAPLYKMLEAARLNESDEVLEIGPGLGVLTLELCRRAKKVVAVEK 70
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D +++ ++ + S + + +L+ED +K + F+ G KVVAN+P+ I++
Sbjct: 71 DPNLIPVLEKLTKSYNNICLLREDVLKLDMEKLWREYFD------GKFKVVANLPYYITS 124
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
VI +++ + V+++Q+E A RLV + +Y +++ V Y++ + V R+
Sbjct: 125 PVIMKIINNRHLIEMAVIMIQKEVAHRLV-AAPGNKDYGILSVAVQLYADVDLVCHVGRS 183
Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-- 349
F P PKVD+AVV LK+ + P + + FF +V +AF +RK ++ SL+ +
Sbjct: 184 AFLPPPKVDSAVVRLVLKEGSAVP-LEDERLFFKVVEAAFGERRKTVKNSLRSRLSLFAG 242
Query: 350 EIEKALGDVGLPATAAAD 367
++E+AL G+ + A+
Sbjct: 243 DVEEALERAGIDGSRRAE 260
>gi|251794062|ref|YP_003008793.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
gi|247541688|gb|ACS98706.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
Length = 298
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 8/228 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ +AA + + LEIGPG G+LT L A TV AIE D +
Sbjct: 29 KKSLGQNFLIDQNILHKIVSAAGLDKTKGALEIGPGIGALTQHLAAAAGTVTAIEIDNRL 88
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A + +KV+ D +K ++ LFE R + VVAN+P+ ++T ++
Sbjct: 89 IPILGDILAGEEHVKVVHGDVLKLDLK----KLFEERFADVAGVSVVANLPYYVTTPILM 144
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q+E A R+ +P EY +++ V +Y EP+ VP T F
Sbjct: 145 KLLEERLPLENIVVMIQKEVAERMAAKPG--GKEYGSLSVAVQYYCEPQLVCIVPHTVFI 202
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
PQP VD+AV+ +++ V FF +V ++F +RK L +L
Sbjct: 203 PQPNVDSAVIKLAVREKPPV-EVEDEAHFFRIVQASFAQRRKTLANNL 249
>gi|254422682|ref|ZP_05036400.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335]
gi|196190171|gb|EDX85135.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335]
Length = 302
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 140/246 (56%), Gaps = 24/246 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G+ RK GQH++ + ++ +Q+ A + EGD+VLEIGPG G LT LL+ A VLA+E
Sbjct: 26 GKRARKRFGQHWLCSDQVLNQIVRAGELAEGDLVLEIGPGQGVLTQRLLDTSAKVLAVEI 85
Query: 172 DQHMVGLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
D+ + + ++F + Q ++++ DF++ + +L FE + + KVVANIP+
Sbjct: 86 DRDLCLQLSDQFIADMASGQFRLIESDFLELNFDQALLD-FELDRPN----KVVANIPYY 140
Query: 229 ISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
I+ ++++LL P FS +VLL+Q+E + RL +P R + + I V + +E
Sbjct: 141 ITAPILEKLLGTMRSPNPFPFSNIVLLVQKEISDRLCAQPGTRANGA--LTIRVQYLAEC 198
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFS-MVSSAFNGKRKMLR 339
E VP + F P PKVD+AVV + + P +T + F S +V F+ KRKMLR
Sbjct: 199 EEICLVPPSAFKPTPKVDSAVVRLRPR-----PFLTPAEDPIFLSQLVKLGFSQKRKMLR 253
Query: 340 KSLQHL 345
+LQ +
Sbjct: 254 NNLQSI 259
>gi|427720873|ref|YP_007068867.1| dimethyladenosine transferase [Calothrix sp. PCC 7507]
gi|427353309|gb|AFY36033.1| dimethyladenosine transferase [Calothrix sp. PCC 7507]
Length = 272
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 132/235 (56%), Gaps = 14/235 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ + ++ D + AA D +LEIGPGTG LT LL +++A+E D+
Sbjct: 4 PRRHFAQHWLKSEKVLDAIVKAAGCTSDDRILEIGPGTGILTRRLLPLVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ S + + + +K + KVVANIP+NI+ +I
Sbjct: 64 LCQLLAKQLGKKENFLLLQGDFLTLDSPSQLTAFPKFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + F +VLL+Q+E A RL +P R + +++ V + ++ E V
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLVQKEVAERLYAKPESRA--FGALSVRVQYLADCELICPV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P F+P PKVD+AVV + +Q + PA+ K S++ F KRKMLR +LQ
Sbjct: 178 PAAAFYPAPKVDSAVVRLRPRQ-IETPALDPRK-LESLIKLGFAAKRKMLRNNLQ 230
>gi|168487122|ref|ZP_02711630.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00]
gi|418185732|ref|ZP_12822270.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47283]
gi|419480797|ref|ZP_14020600.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19101]
gi|419500499|ref|ZP_14040192.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47597]
gi|419511224|ref|ZP_14050864.1| dimethyladenosine transferase [Streptococcus pneumoniae NP141]
gi|419531034|ref|ZP_14070559.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40028]
gi|421213906|ref|ZP_15670859.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070108]
gi|421216044|ref|ZP_15672964.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070109]
gi|183569963|gb|EDT90491.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00]
gi|353847636|gb|EHE27657.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47283]
gi|379569385|gb|EHZ34356.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19101]
gi|379570829|gb|EHZ35789.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40028]
gi|379598555|gb|EHZ63343.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47597]
gi|379630679|gb|EHZ95261.1| dimethyladenosine transferase [Streptococcus pneumoniae NP141]
gi|395578619|gb|EJG39134.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070108]
gi|395579424|gb|EJG39924.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070109]
gi|429316775|emb|CCP36493.1| dimethyladenosine transferase [Streptococcus pneumoniae SPN034156]
Length = 290
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFIHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|417924640|ref|ZP_12568079.1| dimethyladenosine transferase [Streptococcus mitis SK569]
gi|342835859|gb|EGU70089.1| dimethyladenosine transferase [Streptococcus mitis SK569]
Length = 290
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 130/244 (53%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|149007460|ref|ZP_01831103.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74]
gi|417677689|ref|ZP_12327094.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17545]
gi|418097116|ref|ZP_12734223.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16531]
gi|418113320|ref|ZP_12750318.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41538]
gi|418155945|ref|ZP_12792670.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16242]
gi|418163017|ref|ZP_12799697.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17328]
gi|418226343|ref|ZP_12852969.1| dimethyladenosine transferase [Streptococcus pneumoniae NP112]
gi|419467643|ref|ZP_14007523.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05248]
gi|419513366|ref|ZP_14052998.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05578]
gi|419517572|ref|ZP_14057186.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02506]
gi|419526705|ref|ZP_14066260.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14373]
gi|421284117|ref|ZP_15734901.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04216]
gi|421299451|ref|ZP_15750137.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60080]
gi|147761032|gb|EDK68001.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74]
gi|332071962|gb|EGI82450.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17545]
gi|353767242|gb|EHD47778.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16531]
gi|353782251|gb|EHD62687.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41538]
gi|353819651|gb|EHD99843.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16242]
gi|353826295|gb|EHE06454.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17328]
gi|353879909|gb|EHE59730.1| dimethyladenosine transferase [Streptococcus pneumoniae NP112]
gi|379542556|gb|EHZ07712.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05248]
gi|379556194|gb|EHZ21250.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14373]
gi|379634531|gb|EHZ99096.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05578]
gi|379637864|gb|EIA02414.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02506]
gi|395879908|gb|EJG90964.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04216]
gi|395899466|gb|EJH10407.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60080]
Length = 290
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 131/244 (53%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|62184932|ref|YP_219717.1| dimethyladenosine transferase [Chlamydophila abortus S26/3]
gi|81312896|sp|Q5L6H5.1|RSMA_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|62147999|emb|CAH63750.1| dimethyladenosine transferase [Chlamydophila abortus S26/3]
Length = 278
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 147/270 (54%), Gaps = 22/270 (8%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
GR P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EK
Sbjct: 18 GR-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEK 76
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D ++ E ++ QL + E C L + + G +VVAN+P++I+T
Sbjct: 77 D----SMLEE---TLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITT 125
Query: 232 DVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++++L L + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 126 PLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVS 183
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P+P+V +AVV +K+ TK FFS+ +AF +RK+L +L+ L
Sbjct: 184 PGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKE 242
Query: 350 EIEKALGDVGLPATAAADYKFPITLPSTEY 379
+ +AL + +D P TL +Y
Sbjct: 243 RVFEALSQLHF-----SDKTRPETLSLDDY 267
>gi|336430562|ref|ZP_08610507.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
gi|336017767|gb|EGN47524.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
Length = 290
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 141/267 (52%), Gaps = 15/267 (5%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
TI+ L+ +K GQ++++ ++ + + AA + E D VLEIGPG G++T L
Sbjct: 9 GTIEVLHKYNFNFQKKFGQNFLIEPKVLETIVEAAEIGEEDCVLEIGPGIGTMTQYLAEQ 68
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V+A+E D+ ++ ++++ ++ + ++ D +K + + R K+ KVV
Sbjct: 69 AGEVVAVEIDKALIPILKDTLSAYSNVTIINADILKLDMEELV-----REKNGGKPVKVV 123
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSE 281
AN+P+ I+T +I QL + +++Q E A R+ V P T +Y +++ V +YS
Sbjct: 124 ANLPYYITTPIIMQLFESHVPLESITIMVQTEVAERMQVGPG--TKDYGALSLAVQYYSR 181
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSF-FSMVSSAFNGKRKMLRK 340
PE VP + F P+P V + V+ +L + P T+ + F F ++ ++FN +RK L
Sbjct: 182 PEIVTHVPPSCFMPRPNVGSTVI--RLNRYEKPPVETADEEFMFKLIRASFNQRRKTLVN 239
Query: 341 SLQHLC----TSLEIEKALGDVGLPAT 363
L + T E+ AL +GLPAT
Sbjct: 240 GLSNASGLNLTKEEVTDALEKMGLPAT 266
>gi|334120144|ref|ZP_08494226.1| Ribosomal RNA small subunit methyltransferase A [Microcoleus
vaginatus FGP-2]
gi|333456932|gb|EGK85559.1| Ribosomal RNA small subunit methyltransferase A [Microcoleus
vaginatus FGP-2]
Length = 273
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 138/235 (58%), Gaps = 15/235 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D++ AA++ + D VLEIGPGTG LT LL A +V+A+E D+
Sbjct: 6 PRKQFAQHWLKSEKALDKIVKAASL-DRDRVLEIGPGTGILTRRLLPAAESVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++ D +LQ D ++ + + L+ F + ++ + KVVANIP+NI+ ++
Sbjct: 65 LCLKLAKQLGKTDNFLLLQGDILEMDLEAE-LTAFPKFQNPN---KVVANIPYNITGPIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P F +VLL+Q+E A RL +P ++ + +++ V + +E E V
Sbjct: 121 QKLLGTISVPAAKPFDSIVLLVQKEVAQRLYAKPG--STAFGALSVRVQYLAECELICDV 178
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P +FFP PKVD+AVV + + + PAV + + ++V F KRKMLR +L+
Sbjct: 179 PSKDFFPPPKVDSAVVRL-VPRLIETPAV-NPRYLENLVKLGFGSKRKMLRNNLK 231
>gi|238852850|ref|ZP_04643255.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4]
gi|282852550|ref|ZP_06261892.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1]
gi|311111301|ref|ZP_07712698.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22]
gi|238834544|gb|EEQ26776.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4]
gi|282556292|gb|EFB61912.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1]
gi|311066455|gb|EFQ46795.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22]
Length = 296
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 137/259 (52%), Gaps = 27/259 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF------AKVV 222
+++ ID + K++ +D +K + K S GF K+V
Sbjct: 85 PEILKNELPQKIDGEELNSRFKLVMKDVLKANF----------TKDSDGFLDLNKPVKIV 134
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
AN+P+ I+T +I L+ FS + L++Q+E A RLV +T EY P+ I V
Sbjct: 135 ANLPYYITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAIP-KTKEYGPLTIAVQSRMNV 193
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E +V T+F P+PKVD+AVV L T+ P + F +V F +RK L +L
Sbjct: 194 ELAEEVKSTSFMPRPKVDSAVVV--LTPLTEKPNIDDYSFFDHVVKMCFAQRRKTLANNL 251
Query: 343 QHLCTSLEI-EKALGDVGL 360
+ L ++ EK + D+GL
Sbjct: 252 KSLVRDKDMREKMINDLGL 270
>gi|407003278|gb|EKE19877.1| dimethyladenosine transferase [uncultured bacterium]
Length = 267
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 139/256 (54%), Gaps = 13/256 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ ++E+ ++ +A + D+V+E+GPG G+LT +L V+AIE D +
Sbjct: 5 KKSLGQNFLKDAEVLGRIIKSANLSSDDVVVEVGPGQGALTELLAGVCKKVIAIELDDRL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ + +F ++++ +D +K ++ + M + ++S KVVANIP+ I+ +I+
Sbjct: 65 IEPLHTKFVGDKNVEIIHDDILKLNLPALMEKQLKDNNATS--YKVVANIPYYITAPIIR 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L +EV+ ++Q+E A R+ + E + + V +Y+ + F V + +F P
Sbjct: 123 LFLETKIPPTEVMFMVQKEVAERICA---KPGEMSILAVSVQYYARALFLFTVFKESFEP 179
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE----- 350
PKVD+A++ + P+ TK FF +V S F+ KRK L + +L SL+
Sbjct: 180 MPKVDSAIIHISRNIKDEQPSAEETKKFFRVVKSGFSAKRKTL---INNLANSLQLDKKH 236
Query: 351 IEKALGDVGLPATAAA 366
IE AL +G A A
Sbjct: 237 IEDALFSIGFAANTRA 252
>gi|116628883|ref|YP_814055.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323]
gi|420147807|ref|ZP_14655082.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
gasseri CECT 5714]
gi|116094465|gb|ABJ59617.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323]
gi|398400954|gb|EJN54485.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
gasseri CECT 5714]
Length = 298
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 137/259 (52%), Gaps = 27/259 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 27 KKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 86
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF------AKVV 222
+++ ID + K++ +D +K + K S GF K+V
Sbjct: 87 PEILKNELPQKIDGEELNSRFKLVMKDVLKANF----------TKDSDGFLDLNKPVKIV 136
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
AN+P+ I+T +I L+ FS + L++Q+E A RLV +T EY P+ I V
Sbjct: 137 ANLPYYITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAIP-KTKEYGPLTIAVQSRMNV 195
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E +V T+F P+PKVD+AVV L T+ P + F +V F +RK L +L
Sbjct: 196 ELAEEVKSTSFMPRPKVDSAVVV--LTPLTEKPNIDDYSFFDHVVKMCFAQRRKTLANNL 253
Query: 343 QHLCTSLEI-EKALGDVGL 360
+ L ++ EK + D+GL
Sbjct: 254 KSLVRDKDMREKMINDLGL 272
>gi|337751810|ref|YP_004645972.1| protein RsmA [Paenibacillus mucilaginosus KNP414]
gi|379724747|ref|YP_005316878.1| protein RsmA [Paenibacillus mucilaginosus 3016]
gi|336302999|gb|AEI46102.1| RsmA [Paenibacillus mucilaginosus KNP414]
gi|378573419|gb|AFC33729.1| RsmA [Paenibacillus mucilaginosus 3016]
Length = 305
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 6/227 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ + +++ AA + + LEIGPG G+LT L A V A+E DQ +
Sbjct: 33 KKSLGQNFLIDTNVLNKIVGAAELDKTKGALEIGPGIGALTQQLAKAAGRVTAVEIDQRL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++E A V+ D ++ + LF+ S VVAN+P+ ++T +I
Sbjct: 93 LPLLKETLAPYPHASVIHGDVLQVSLN----DLFKEHFSECSGVSVVANLPYYVTTPIIM 148
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ EY ++I V +Y EPE VP T F P
Sbjct: 149 KLLEEKLPLENIVVMIQKEVAERMAA-GPGGKEYGSLSIAVQYYCEPEIVAIVPHTVFIP 207
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
QP VD+AV+ K++Q V FF ++ ++F +RK + +L
Sbjct: 208 QPNVDSAVIKLKVRQQPPV-DVEDEDFFFDVIQASFTQRRKTIYNNL 253
>gi|399888382|ref|ZP_10774259.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium arbusti SL206]
Length = 277
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 137/247 (55%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++S + + A + + D V+EIGPG G+LT LL++ V AIE D ++
Sbjct: 16 KSLGQNFLIDSTVLTDIVKGADISKEDFVIEIGPGVGTLTKQLLDSAKAVCAIELDSDLL 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D ++ +D +K F + K+VAN+P+ ++T +I +
Sbjct: 76 PILEEELKEYDNFTLVHKDALKVD--------FNEIINYENSVKLVANLPYYVTTPIISK 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G +F + +++Q+E A R+ +P+ + EY +++ V +Y + E KV +F P
Sbjct: 128 LLISGYVFKSLTIMIQKEVAERIAAKPNCK--EYGALSLLVQYYCDTEIIRKVSPASFIP 185
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
QPKV++ V+ KL + + V K FF++V +FN +RK L +L+ L S E +E
Sbjct: 186 QPKVESIVI--KLDRLIEPRVKVKDEKLFFTIVRDSFNMRRKTLWNALKQLKLSKENLEY 243
Query: 354 ALGDVGL 360
A + G+
Sbjct: 244 AFSESGI 250
>gi|302669432|ref|YP_003829392.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
B316]
gi|302393905|gb|ADL32810.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
B316]
Length = 292
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 147/268 (54%), Gaps = 17/268 (6%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +K GQ+++++S + D + +AA V + D VLEIGPG GSLT L +
Sbjct: 10 TKEVLAKFGMSAKKKFGQNFLIDSGVLDGIVSAAGVTKDDCVLEIGPGIGSLTQYLAESA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + + D + V+ ED +K I + + + + KVVA
Sbjct: 70 GKVVAVEIDKTLIPVLADTLSEYDNVTVINEDVLKVDIEAIV-----KEYNGGNPIKVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T +I +L G + +++Q+E A R+ + P +Y +++ V +Y++
Sbjct: 125 NLPYYITTPIIMKLFESGAPIESITVMVQKEVADRMAMGPG--NKDYGSLSLAVGYYAKA 182
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRK 340
VP ++F PQP V +AVV KL + ++ PAV K F ++ ++FN +RK L
Sbjct: 183 SEVMDVPPSSFIPQPGVGSAVV--KLTRYSE-PAVCVQDEKYMFEIIRTSFNQRRKTLSN 239
Query: 341 SLQH----LCTSLEIEKALGDVGLPATA 364
SL + + +++ AL ++G+ A
Sbjct: 240 SLANNPALRVSRDQVQAALAEMGIDEKA 267
>gi|150020142|ref|YP_001305496.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429]
gi|149792663|gb|ABR30111.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429]
Length = 258
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 20/229 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++ N+ I ++ A + E D+VLEIGPG G+LT L+ GA ++A+E D+ +
Sbjct: 16 KGLGQNFLTNTHIAKKIVERADINENDVVLEIGPGAGTLTEFLVLTGAKIIAVEIDKRLK 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ ERF D ++++ DF+K F+ GF KVVANIP++I+ ++K+
Sbjct: 76 PIL-ERFNKYDNIEIIFVDFLK----------FDVSVLPKGF-KVVANIPYSITGMILKK 123
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
+L D FS+ VL++Q+E RL+ P + +++ V Y+ F V + NF P+
Sbjct: 124 IL-FSD-FSKAVLMVQKEVGDRLLLPPGADRNF--LSVVVQSYTMVRKVFDVSKGNFVPR 179
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PKVD+ V+ F+ + Y K F+ VS F KRK L+ +L+
Sbjct: 180 PKVDSVVLEFEKTEDFKY----DIKEFWDFVSKCFGAKRKTLQNNLKRF 224
>gi|322391321|ref|ZP_08064791.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780]
gi|321145747|gb|EFX41138.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780]
Length = 290
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTDEVKDKLTKALDQAGL 264
>gi|257126070|ref|YP_003164184.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b]
gi|257050009|gb|ACV39193.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b]
Length = 287
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 132/246 (53%), Gaps = 7/246 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ +S ++D + A + E VLEIGPG G LT L+ + A E D +
Sbjct: 23 KKKYGQNFLNDSNLSDDILDVANIDEKTEVLEIGPGLGFLTEKLIENSKFLTAFEIDDDL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ + ++F + K++ +DF++ ++ + E KS KVVANIP+ I++ +I
Sbjct: 83 IPFLNKKFQKKENFKLIHQDFMEVDLKEFFEN--EENKSKKN-VKVVANIPYYITSPIIN 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL + E+ L++Q+E A R+ +P + + V FY+E EY F VP+ F
Sbjct: 140 KLLEYRENIDEIYLMVQKEVAERIASQP--HSKNMSLLTHAVQFYAETEYLFTVPKEKFD 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P PKVD+A + K+ + Y + S + +F + AF+ KRK + +L L S + +
Sbjct: 198 PVPKVDSAFLGIKILKDKRYESQISEEKYFKYLKEAFSNKRKSIANNLMKLGFSKDVVGN 257
Query: 354 ALGDVG 359
AL VG
Sbjct: 258 ALEKVG 263
>gi|186685005|ref|YP_001868201.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102]
gi|226732604|sp|B2J0A6.1|RSMA_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|186467457|gb|ACC83258.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102]
Length = 286
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 136/241 (56%), Gaps = 20/241 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNAGATVLA 168
PRK QH++ + + D + AA E GD +LEIGPGTG LT LL +++A
Sbjct: 4 PRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPLVQSLIA 63
Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+E D+ + L+ ++ + +LQ DF+ + S++++ +K + KVVANIP+N
Sbjct: 64 VEIDRDLCQLLSKQLGKTENFLLLQGDFLTLDLPSYLVAFPNFQKPN----KVVANIPYN 119
Query: 229 ISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
I+ +I++LL P + F +VLL+Q+E A RL +P +T + +++ V + +E
Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERLYAKPGSKT--FGALSVRVQYLAEC 177
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E VP + F P PKVD+AVV + ++ + PA+ + + + + F KRKMLR +L
Sbjct: 178 ELICTVPASAFHPAPKVDSAVVRLRPRK-IEIPAL-NPRQLETFLKLGFGAKRKMLRNNL 235
Query: 343 Q 343
Q
Sbjct: 236 Q 236
>gi|75911082|ref|YP_325378.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413]
gi|122064280|sp|Q3M3F3.1|RSMA_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|75704807|gb|ABA24483.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413]
Length = 271
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 12/258 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ + + D + AA D +LEIGPGTG LT LL +LA+E D+
Sbjct: 4 PRRVFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPLVEALLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++L+ + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGQKENFLLLQGDFLTLDLVANLLTFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + F +VLL+Q+E A RL + + + +++ V + ++ E+ VP
Sbjct: 120 EKLLGTIANPNPEPFDSIVLLIQKEVAERLYAKA-GSRTFGALSVRVQYLADCEFICDVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P PKVD+AVV + +Q PA K ++V F KRKMLR +LQ +
Sbjct: 179 AGAFHPPPKVDSAVVRLRPRQ-IQIPA-RDPKRLENLVKLGFGAKRKMLRNNLQSVVDRD 236
Query: 350 EIEKALGDVGLPATAAAD 367
+ + L + + A A+
Sbjct: 237 RLSQLLEQLNINPQARAE 254
>gi|430751838|ref|YP_007214746.1| dimethyladenosine transferase [Thermobacillus composti KWC4]
gi|430735803|gb|AGA59748.1| dimethyladenosine transferase [Thermobacillus composti KWC4]
Length = 300
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 9/252 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ++++++ + ++ AA + LEIGPG G+LT L A V AIE D+ +
Sbjct: 33 RKALGQNFLVDANVLRKIVDAAELGPSKGALEIGPGIGALTEQLAMAAGKVAAIELDRRL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E FA ++++ D +K ++ L R + VVAN+P+ ++T ++
Sbjct: 93 IPILEELFAPCANVEIVHGDALKLDLK----QLIAERFAGLERVSVVANLPYYVTTPILM 148
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ P EY +++ V +++EPE VPRT F P
Sbjct: 149 KLLEDRLPLEHIVVMVQKEVAERMTAPP-GGKEYGSLSVAVRYFAEPEVVCTVPRTVFVP 207
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
P VD+AVV L+ A VT FF +V +AF +RK L +L L L E+
Sbjct: 208 PPNVDSAVVRLTLR-ARPPVDVTDEAMFFRVVHAAFAQRRKTLANNLTAL---LGKERRQ 263
Query: 356 GDVGLPATAAAD 367
LPA+ D
Sbjct: 264 EAAALPASCGID 275
>gi|340751996|ref|ZP_08688806.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
mortiferum ATCC 9817]
gi|229420963|gb|EEO36010.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
mortiferum ATCC 9817]
Length = 264
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 137/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLNS-EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ + E+ ++ + VQ D VLEIGPG G+LT +LL+ V+ +E D+
Sbjct: 6 KKKFGQNFLTDQREVLRKIMEVSNVQAEDTVLEIGPGEGALTALLLDTAKKVVTVEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++R++F + ++ D ++ +R+++ +G KVVANIP+ I++ +I
Sbjct: 66 LEKILRKKFDGNPKYTLVMNDVLETDLRAYV---------GAG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ D+ E+ +++Q+E A R+ + + E + + V +Y E EY F +P+ F
Sbjct: 116 NKLIENRDVIDEIYIMVQKEVAERVC--AKKGKERSVLTLAVEYYGEAEYLFTIPKEFFT 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-EIEK 353
P PKVD+A ++ KL + Y +FF V + F+ KRK L + L S E+
Sbjct: 174 PIPKVDSAFMSIKLYKDNRYINQVDEDTFFKYVKAGFSNKRKNLLNNFSTLGYSKDELRV 233
Query: 354 ALGDVGLPATAAAD 367
L +P T A+
Sbjct: 234 ILAKAEIPETERAE 247
>gi|225859740|ref|YP_002741250.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585]
gi|418147226|ref|ZP_12784000.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13637]
gi|254807886|sp|C1CA29.1|RSMA_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|225720605|gb|ACO16459.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585]
gi|353811154|gb|EHD91399.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13637]
Length = 290
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|352516530|ref|YP_004885847.1| 16S rRNA methyltransferase [Tetragenococcus halophilus NBRC 12172]
gi|348600637|dbj|BAK93683.1| 16S rRNA methyltransferase [Tetragenococcus halophilus NBRC 12172]
Length = 299
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A VLA E DQ +
Sbjct: 25 KKSLGQNFLTEPNILHKIVQTANITKETNVIEVGPGIGALTEHLAQNAAQVLAFEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + +D + ++ +D ++ + +F ++ KVVAN+P+ I+T ++
Sbjct: 85 LLVLEDTLQDLDNVTIVNQDVLQTDLVEVTNEVFSKKLP----LKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L E+++++Q+E A R+ EP T Y + I V +Y E E F VP+T F
Sbjct: 141 HFLTSSLAVDEMIVMIQKEVAERINAEPG--TKAYGSLTIAVQYYMETEISFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+A++ K ++ + K+FF + +AF +RK L +LQH
Sbjct: 199 PQPNVDSAILNLKRREQAKVQLINE-KAFFKLTKAAFALRRKTLWNNLQH 247
>gi|148998515|ref|ZP_01825956.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70]
gi|168576615|ref|ZP_02722481.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016]
gi|307068593|ref|YP_003877559.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200]
gi|417699358|ref|ZP_12348528.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41317]
gi|418149322|ref|ZP_12786083.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13856]
gi|419454039|ref|ZP_13994008.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP03]
gi|419471863|ref|ZP_14011721.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07914]
gi|419504703|ref|ZP_14044369.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47760]
gi|419506850|ref|ZP_14046510.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49194]
gi|421239305|ref|ZP_15695868.1| dimethyladenosine transferase [Streptococcus pneumoniae 2071247]
gi|421245753|ref|ZP_15702250.1| dimethyladenosine transferase [Streptococcus pneumoniae 2081685]
gi|421314839|ref|ZP_15765425.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47562]
gi|147755708|gb|EDK62754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70]
gi|183577641|gb|EDT98169.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016]
gi|306410130|gb|ADM85557.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus
pneumoniae AP200]
gi|332199299|gb|EGJ13377.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41317]
gi|353811105|gb|EHD91351.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13856]
gi|379544108|gb|EHZ09254.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07914]
gi|379604805|gb|EHZ69560.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47760]
gi|379605014|gb|EHZ69767.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49194]
gi|379624716|gb|EHZ89346.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP03]
gi|395600073|gb|EJG60232.1| dimethyladenosine transferase [Streptococcus pneumoniae 2071247]
gi|395606788|gb|EJG66889.1| dimethyladenosine transferase [Streptococcus pneumoniae 2081685]
gi|395912467|gb|EJH23326.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47562]
Length = 290
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYRVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|451979631|ref|ZP_21928046.1| Ribosomal RNA small subunit methyltransferase A [Nitrospina
gracilis 3/211]
gi|451763159|emb|CCQ89243.1| Ribosomal RNA small subunit methyltransferase A [Nitrospina
gracilis 3/211]
Length = 262
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 135/247 (54%), Gaps = 16/247 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
++SLGQ+++ + I +++ A A +++G V+EIGPG G LT +LL ++A+E D +
Sbjct: 4 KRSLGQNFLTDPAIAEEIVAHAQIEDGGTVIEIGPGPGILTGLLLERCGKLIALEIDPKL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ +RF S + + Q D +L + G +VV+N+P+ + ++K
Sbjct: 64 CHLLNKRFKSNPKFDLHQRD-----------ALVYDYSQAGGRFQVVSNLPYYAAMPILK 112
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ G + + L+LQ E RLV +P R +Y + +F F+ E E +V + NF
Sbjct: 113 RLIHYGSHIANMTLMLQREVVDRLVAQPGSR--DYGSLTVFTQFHCEVERIMEVGKKNFD 170
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE-K 353
P PKVD++V+ + A V + K+FF +V +AF KRKML+ +L+ L + +
Sbjct: 171 PPPKVDSSVIRLVPRSAPPV-EVDNLKTFFHVVHAAFFHKRKMLKNNLKSLAKHFDFTWQ 229
Query: 354 ALGDVGL 360
+ D G+
Sbjct: 230 GIEDAGI 236
>gi|225026666|ref|ZP_03715858.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353]
gi|224956036|gb|EEG37245.1| dimethyladenosine transferase [Eubacterium hallii DSM 3353]
Length = 293
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 141/269 (52%), Gaps = 17/269 (6%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
TI L G +K GQ++++++ + D++ AA + + D VLEIGPG G++T L
Sbjct: 15 QETIAVLQRYGFNFQKKYGQNFLIDTHVLDKIIGAAEIGKDDFVLEIGPGIGTMTQYLAE 74
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
A V+A+E D ++ ++ + D + VL ED +K IR K+ KV
Sbjct: 75 AAREVVAVEIDTKLIPILEDTLKEYDNVTVLNEDILKVDIRK-----IAEEKNGGKPIKV 129
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 130 VANLPYYITTPIIMGLFESEVPLDSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 187
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSF-FSMVSSAFNGKRKMLR 339
EP VP F P+P V +AV+ +L + + P + +F F ++ ++FN +RK L+
Sbjct: 188 EPYIVANVPPNCFIPRPAVGSAVI--RLTRYQEKPVKVNDSAFMFKIIRASFNQRRKTLQ 245
Query: 340 KSLQHLCTSLEIEK-----ALGDVGLPAT 363
L + + L I K AL ++GL T
Sbjct: 246 NGLYN-SSELRIPKEKTVAALEEMGLTPT 273
>gi|363889336|ref|ZP_09316699.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM5]
gi|363893052|ref|ZP_09320192.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM2]
gi|402838006|ref|ZP_10886521.1| dimethyladenosine transferase [Eubacteriaceae bacterium OBRC8]
gi|361961783|gb|EHL14962.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM2]
gi|361966759|gb|EHL19646.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM5]
gi|402274437|gb|EJU23621.1| dimethyladenosine transferase [Eubacteriaceae bacterium OBRC8]
Length = 288
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 129/226 (57%), Gaps = 7/226 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++N I +++ AA + + D+VLEIG G G+LT+ L V+A+E D++++
Sbjct: 24 KSLGQNFLINENILNEIIEAADITKDDVVLEIGTGIGTLTSKLCERAKRVVAVEIDKNLL 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E ++ + ++ +D +K I + SL +K KVVAN+P+ I+T +I +
Sbjct: 84 PILNETLSAYQNIDIINKDILKTDINEELKSLGINQK-----VKVVANLPYYITTPIIMK 138
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
+L S +VL+LQ+E A R + T +Y ++I V +Y + + KVP+ +F P+
Sbjct: 139 ILEENVNVSVMVLMLQKEVANR-INAQHSTKDYGSLSIAVQYYCDTQIICKVPKNSFIPE 197
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P VD+ V+ + + + + FF +V +F +RK + SL
Sbjct: 198 PNVDSLVIKLTVNEKRKVE-IEDEELFFKLVRGSFAKRRKTILNSL 242
>gi|406592147|ref|YP_006739327.1| dimethyladenosine transferase [Chlamydia psittaci CP3]
gi|407455135|ref|YP_006734026.1| dimethyladenosine transferase [Chlamydia psittaci GR9]
gi|407456511|ref|YP_006735084.1| dimethyladenosine transferase [Chlamydia psittaci VS225]
gi|407457867|ref|YP_006736172.1| dimethyladenosine transferase [Chlamydia psittaci WS/RT/E30]
gi|407460487|ref|YP_006738262.1| dimethyladenosine transferase [Chlamydia psittaci WC]
gi|410858279|ref|YP_006974219.1| dimethyladenosine transferase [Chlamydia psittaci 01DC12]
gi|449070955|ref|YP_007438035.1| dimethyladenosine transferase [Chlamydophila psittaci Mat116]
gi|405781678|gb|AFS20427.1| dimethyladenosine transferase [Chlamydia psittaci GR9]
gi|405783772|gb|AFS22519.1| dimethyladenosine transferase [Chlamydia psittaci VS225]
gi|405785543|gb|AFS24289.1| dimethyladenosine transferase [Chlamydia psittaci WS/RT/E30]
gi|405786660|gb|AFS25404.1| dimethyladenosine transferase [Chlamydia psittaci WC]
gi|405788019|gb|AFS26762.1| dimethyladenosine transferase [Chlamydia psittaci CP3]
gi|410811174|emb|CCO01819.1| dimethyladenosine transferase [Chlamydia psittaci 01DC12]
gi|449039463|gb|AGE74887.1| dimethyladenosine transferase [Chlamydophila psittaci Mat116]
Length = 278
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ QL + E C L + K G +VVAN+P++++T ++
Sbjct: 80 FE-------ETLKQLPIHLEITDACKYPLSQL----QDKGWQGKGRVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L + + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVRYAFKVSPGC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F P+P+V +AVV +K TK FFS+ +AF +RK+L +L+ L +
Sbjct: 187 FLPKPQVSSAVVHMTVKDRFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKERVF 245
Query: 353 KALGDVGLPATAAADYKFPITLPSTEYTLFME 384
+AL + +D P TL +Y E
Sbjct: 246 EALSQLNF-----SDKTRPETLSLDDYLKLFE 272
>gi|300362465|ref|ZP_07058641.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03]
gi|300353456|gb|EFJ69328.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03]
Length = 296
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 135/253 (53%), Gaps = 15/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLAAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ ++ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILKNELPQKVAGEELSNRFKLVMKDVLKANFTKDSDGFLDLNKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L+ FS + L++Q+E A RLV +T EY P+ I V + +V
Sbjct: 141 ITTPIIFNLIKSNLAFSSLTLMMQKEVAERLVAKP-KTKEYGPLTIAVQSRMNVKLAEEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
T+F P+PKVD+AVV L T+ P + F +V F +RK L +L+ L
Sbjct: 200 KSTSFMPRPKVDSAVVV--LTPLTEKPDIDDYSFFDHVVKMCFAQRRKTLANNLKSLVKD 257
Query: 349 LEI-EKALGDVGL 360
++ EK + D+GL
Sbjct: 258 RDMREKMINDLGL 270
>gi|306824464|ref|ZP_07457810.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|421489445|ref|ZP_15936825.1| dimethyladenosine transferase [Streptococcus oralis SK304]
gi|304433251|gb|EFM36221.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|400365682|gb|EJP18732.1| dimethyladenosine transferase [Streptococcus oralis SK304]
Length = 290
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + ++ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQYIQNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV + FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDEQFFFKISKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|329942659|ref|ZP_08291438.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
gi|332287254|ref|YP_004422155.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|384450406|ref|YP_005663006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|384451407|ref|YP_005664005.1| dimethyladenosine transferase [Chlamydophila psittaci 01DC11]
gi|384452381|ref|YP_005664978.1| dimethyladenosine transferase [Chlamydophila psittaci 08DC60]
gi|384453356|ref|YP_005665952.1| dimethyladenosine transferase [Chlamydophila psittaci C19/98]
gi|384454335|ref|YP_005666930.1| dimethyladenosine transferase [Chlamydophila psittaci 02DC15]
gi|392376497|ref|YP_004064275.1| dimethyladenosine transferase [Chlamydophila psittaci RD1]
gi|407453815|ref|YP_006732923.1| dimethyladenosine transferase [Chlamydia psittaci 84/55]
gi|254574590|gb|ACT68006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|313847840|emb|CBY16834.1| dimethyladenosine transferase [Chlamydophila psittaci RD1]
gi|325506928|gb|ADZ18566.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|328814919|gb|EGF84908.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
gi|328914500|gb|AEB55333.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|334692137|gb|AEG85356.1| dimethyladenosine transferase [Chlamydophila psittaci C19/98]
gi|334693117|gb|AEG86335.1| dimethyladenosine transferase [Chlamydophila psittaci 01DC11]
gi|334694092|gb|AEG87309.1| dimethyladenosine transferase [Chlamydophila psittaci 02DC15]
gi|334695070|gb|AEG88286.1| dimethyladenosine transferase [Chlamydophila psittaci 08DC60]
gi|405780574|gb|AFS19324.1| dimethyladenosine transferase [Chlamydia psittaci 84/55]
Length = 278
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ QL + E C L + K G +VVAN+P++++T ++
Sbjct: 80 FE-------ETLKQLPIHLEITDACKYPLSQL----QDKGWQGKGRVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L + + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRIKAQPG--GKEYGSLTIFLQFFVDVRYAFKVSPGC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F P+P+V +AVV +K TK FFS+ +AF +RK+L +L+ L +
Sbjct: 187 FLPKPQVSSAVVHMTVKDRFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKERVF 245
Query: 353 KALGDVGLPATAAADYKFPITLPSTEYTLFME 384
+AL + +D P TL +Y E
Sbjct: 246 EALSQLNF-----SDKTRPETLSLDDYLKLFE 272
>gi|347727044|gb|AEP19880.1| dimethyladenosine transferase [Exiguobacterium sp. 11-28]
Length = 292
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 140/253 (55%), Gaps = 17/253 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ AA + E VLEIGPG GSLT V+A+E DQ +
Sbjct: 22 KKSLGQNFLIDLNILNKIVDAAELGEASGVLEIGPGIGSLTEQSAKRAKKVVALEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ + + + V+ D ++ I+ S+ ER S G VVAN+P+ ++T +
Sbjct: 82 LPILEDTMSPYPHVHVIHGDALELDIQ----SIVEREFFSQGIEDISVVANLPYYVTTPI 137
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
I +LL F +V+++Q+E A R+ +P T Y ++I + +Y+E F VP++
Sbjct: 138 IMRLLESQIKFRSLVMMIQKEVAERIGAKPG--TKAYGSLSIAIQYYAEANVSFIVPKSV 195
Query: 293 FFPQPKVDAAVVTFKL--KQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---T 347
F P P VD+AV+T K+ K A D V FF + ++F +RK + +L +
Sbjct: 196 FMPAPNVDSAVITLKMRPKPAVD---VKDEAFFFELARASFAQRRKTILNNLTNYLGKDK 252
Query: 348 SLEIEKALGDVGL 360
+EIE+ LG+ G+
Sbjct: 253 KMEIEQFLGEAGI 265
>gi|218441380|ref|YP_002379709.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424]
gi|218174108|gb|ACK72841.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424]
Length = 273
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 130/234 (55%), Gaps = 14/234 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + DQ+ AA +Q+ D +LEIGPGTG LT LL +V+A+E D+
Sbjct: 5 PRKRFAQHWLRSEQALDQIIEAAQLQQSDHILEIGPGTGILTRRLLPEVNSVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + +D +LQ D + + SH+++ F + KVVANIP+NI+ ++
Sbjct: 65 LCQKLGKSLGKLDNFLLLQGDILSLDLESHLVN-FPKFNHPH---KVVANIPYNITGLIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
+ LL P + +VLL+Q+E A RL +P T Y ++I V + ++ E+ +V
Sbjct: 121 EYLLGTIAEPTQKNYELIVLLIQKEVAERLTAKPG--TKAYGALSIRVQYLAQCEWICEV 178
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P F+P PKVD+AVV + Q PA + K +++ F +RKML +L
Sbjct: 179 PARAFYPPPKVDSAVVRLR-PQLVSNPA-NNPKQLDTLIKLGFANRRKMLYNNL 230
>gi|418203213|ref|ZP_12839639.1| dimethyladenosine transferase [Streptococcus pneumoniae GA52306]
gi|419454355|ref|ZP_13994318.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP04]
gi|421286227|ref|ZP_15737001.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60190]
gi|353866217|gb|EHE46120.1| dimethyladenosine transferase [Streptococcus pneumoniae GA52306]
gi|379630796|gb|EHZ95376.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP04]
gi|395885062|gb|EJG96090.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60190]
Length = 290
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 TERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|169834364|ref|YP_001695338.1| dimethyladenosine transferase [Streptococcus pneumoniae
Hungary19A-6]
gi|194397125|ref|YP_002038567.1| dimethyladenosine transferase [Streptococcus pneumoniae G54]
gi|237651002|ref|ZP_04525254.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI 1974]
gi|237822560|ref|ZP_04598405.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI
1974M2]
gi|418122033|ref|ZP_12758975.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44194]
gi|419458539|ref|ZP_13998480.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02254]
gi|419491895|ref|ZP_14031629.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47179]
gi|419494091|ref|ZP_14033815.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47210]
gi|419533169|ref|ZP_14072683.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47794]
gi|421228271|ref|ZP_15684968.1| dimethyladenosine transferase [Streptococcus pneumoniae 2072047]
gi|421275681|ref|ZP_15726509.1| dimethyladenosine transferase [Streptococcus pneumoniae GA52612]
gi|226732629|sp|B5E2H6.1|RSMA_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226732630|sp|B1I8T7.1|RSMA_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|168996866|gb|ACA37478.1| dimethyladenosine transferase [Streptococcus pneumoniae
Hungary19A-6]
gi|194356792|gb|ACF55240.1| dimethyladenosine transferase [Streptococcus pneumoniae G54]
gi|353791508|gb|EHD71884.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44194]
gi|379529422|gb|EHY94669.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02254]
gi|379591427|gb|EHZ56252.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47179]
gi|379592070|gb|EHZ56888.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47210]
gi|379604913|gb|EHZ69667.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47794]
gi|395592992|gb|EJG53246.1| dimethyladenosine transferase [Streptococcus pneumoniae 2072047]
gi|395872856|gb|EJG83952.1| dimethyladenosine transferase [Streptococcus pneumoniae GA52612]
Length = 290
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|427709931|ref|YP_007052308.1| dimethyladenosine transferase [Nostoc sp. PCC 7107]
gi|427362436|gb|AFY45158.1| dimethyladenosine transferase [Nostoc sp. PCC 7107]
Length = 275
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 131/236 (55%), Gaps = 12/236 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK+ QH++ + ++ + + AA D +LEIGPGTG LT LL ++A+E D+
Sbjct: 4 PRKAFAQHWLKSDKVLNAIVQAAECSTNDRILEIGPGTGILTRQLLPLVQALVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + + +LQ DF+ + +++ + +KS+ KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGTKENFLLLQGDFLALDLETNLAAFPNFQKSN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P F +VLL+Q+E A RL + + + +++ V + +E E VP
Sbjct: 120 EKLLGTITNPNPKPFDSIVLLIQKEVAERLYAKA-GSRTFGALSVRVQYLAECELICNVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
+ F+P PKVD+AVV + +Q + ++V F KRKMLR +LQ +
Sbjct: 179 ASAFYPPPKVDSAVVRLRPRQLEIL--ANDPRRLENLVKLGFGAKRKMLRNNLQSV 232
>gi|167766021|ref|ZP_02438074.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1]
gi|429761761|ref|ZP_19294175.1| dimethyladenosine transferase [Anaerostipes hadrus DSM 3319]
gi|167712101|gb|EDS22680.1| dimethyladenosine transferase [Clostridium sp. SS2/1]
gi|429183084|gb|EKY24158.1| dimethyladenosine transferase [Anaerostipes hadrus DSM 3319]
Length = 285
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 142/253 (56%), Gaps = 13/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + +++ +AA V + D VLEIGPG G++T L V+A+E D+++
Sbjct: 21 QKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGTMTQYLAENAREVMAVEIDKNL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + +L D +K I + K+ KVVAN+P+ I+T +I
Sbjct: 81 IPILSDTLSAYDNVSILNADILKVDIAKIV-----EEKNGGKPVKVVANLPYYITTPIIM 135
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + +++Q+E A R+ + T +Y +++ V +Y+EP VP F P
Sbjct: 136 GLFESHVPIDSITVMVQKEVADRM-QSGPGTKDYGALSLAVQYYAEPYVVANVPPNCFMP 194
Query: 296 QPKVDAAVVTFKLKQATDYP-AVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC----TSLE 350
+PKV +AV+ +L + D P VT+ K F ++ ++FN +RK L+ +++ + +
Sbjct: 195 RPKVGSAVI--RLTKYKDAPIKVTNEKLLFQLIRASFNQRRKTLQNGIKNFGGLNFSKEQ 252
Query: 351 IEKALGDVGLPAT 363
+ +AL ++ LPA+
Sbjct: 253 VAQALEEMELPAS 265
>gi|329767929|ref|ZP_08259441.1| dimethyladenosine transferase [Gemella haemolysans M341]
gi|328838592|gb|EGF88195.1| dimethyladenosine transferase [Gemella haemolysans M341]
Length = 286
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 20/261 (7%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ++++++ I +++ A V E V+EIGPG GSLT L
Sbjct: 8 TFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNENIGVIEIGPGIGSLTEALAKKA 67
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V++ E D ++ ++ E A ++++ D +K + + + S VVA
Sbjct: 68 KKVISFEIDGRLLPILSETLADYSNVEIINNDILKVDVD----KIIAEKMSDCEKIMVVA 123
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T ++ L+ + V+++Q+E A RL + T +Y + I +N+Y++ E
Sbjct: 124 NLPYYITTPILTHLIENTEKIDGYVVMMQKEVANRL-NAKVGTKDYNSLTILLNYYTDVE 182
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML----- 338
Y F VP+ F P P V++AVV K+ ++ + FF V S F +RK L
Sbjct: 183 YLFTVPKKVFVPAPNVESAVVKIMTKETREFE---TDAKFFKFVRSCFVQRRKTLLNNLI 239
Query: 339 -------RKSLQHLCTSLEIE 352
++ LQ+ C +IE
Sbjct: 240 SSYGKDKKQDLQNACVDSDIE 260
>gi|421211824|ref|ZP_15668805.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070035]
gi|421232664|ref|ZP_15689304.1| dimethyladenosine transferase [Streptococcus pneumoniae 2080076]
gi|395572210|gb|EJG32810.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070035]
gi|395594011|gb|EJG54252.1| dimethyladenosine transferase [Streptococcus pneumoniae 2080076]
Length = 290
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|111658871|ref|ZP_01409492.1| hypothetical protein SpneT_02000042 [Streptococcus pneumoniae
TIGR4]
gi|148993153|ref|ZP_01822719.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68]
gi|149021935|ref|ZP_01835922.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72]
gi|168489990|ref|ZP_02714189.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195]
gi|221232709|ref|YP_002511863.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC
700669]
gi|225861802|ref|YP_002743311.1| dimethyladenosine transferase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230181|ref|ZP_06963862.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255257|ref|ZP_06978843.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503755|ref|YP_003725695.1| dimethyladenosine transferase [Streptococcus pneumoniae
TCH8431/19A]
gi|387789028|ref|YP_006254096.1| hypothetical protein MYY_1906 [Streptococcus pneumoniae ST556]
gi|415700640|ref|ZP_11458174.1| dimethyladenosine transferase [Streptococcus pneumoniae 459-5]
gi|415750273|ref|ZP_11478187.1| dimethyladenosine transferase [Streptococcus pneumoniae SV35]
gi|415753186|ref|ZP_11480168.1| dimethyladenosine transferase [Streptococcus pneumoniae SV36]
gi|417313444|ref|ZP_12100155.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04375]
gi|417679946|ref|ZP_12329341.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17570]
gi|418083806|ref|ZP_12721000.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44288]
gi|418085990|ref|ZP_12723167.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47281]
gi|418094787|ref|ZP_12731912.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49138]
gi|418101460|ref|ZP_12738541.1| dimethyladenosine transferase [Streptococcus pneumoniae 7286-06]
gi|418103663|ref|ZP_12740734.1| dimethyladenosine transferase [Streptococcus pneumoniae NP070]
gi|418119460|ref|ZP_12756414.1| dimethyladenosine transferase [Streptococcus pneumoniae GA18523]
gi|418124343|ref|ZP_12761272.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44378]
gi|418126618|ref|ZP_12763522.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44511]
gi|418128878|ref|ZP_12765769.1| dimethyladenosine transferase [Streptococcus pneumoniae NP170]
gi|418131144|ref|ZP_12768026.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07643]
gi|418138089|ref|ZP_12774925.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11663]
gi|418142516|ref|ZP_12779326.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13455]
gi|418151501|ref|ZP_12788245.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14798]
gi|418153754|ref|ZP_12790490.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16121]
gi|418158327|ref|ZP_12795040.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16833]
gi|418165297|ref|ZP_12801962.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17371]
gi|418170089|ref|ZP_12806729.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19077]
gi|418172139|ref|ZP_12808758.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19451]
gi|418179111|ref|ZP_12815691.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41565]
gi|418187971|ref|ZP_12824492.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47360]
gi|418192411|ref|ZP_12828912.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47388]
gi|418196648|ref|ZP_12833122.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47688]
gi|418198836|ref|ZP_12835291.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47778]
gi|418200997|ref|ZP_12837438.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47976]
gi|418215166|ref|ZP_12841899.1| dimethyladenosine transferase [Streptococcus pneumoniae GA54644]
gi|418224197|ref|ZP_12850834.1| dimethyladenosine transferase [Streptococcus pneumoniae 5185-06]
gi|418228480|ref|ZP_12855095.1| dimethyladenosine transferase [Streptococcus pneumoniae 3063-00]
gi|418230770|ref|ZP_12857368.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP01]
gi|418235167|ref|ZP_12861742.1| dimethyladenosine transferase [Streptococcus pneumoniae GA08780]
gi|419425936|ref|ZP_13966129.1| dimethyladenosine transferase [Streptococcus pneumoniae 7533-05]
gi|419428047|ref|ZP_13968226.1| dimethyladenosine transferase [Streptococcus pneumoniae 5652-06]
gi|419430228|ref|ZP_13970389.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11856]
gi|419436793|ref|ZP_13976877.1| dimethyladenosine transferase [Streptococcus pneumoniae 8190-05]
gi|419437173|ref|ZP_13977250.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13499]
gi|419445505|ref|ZP_13985518.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19923]
gi|419447657|ref|ZP_13987660.1| dimethyladenosine transferase [Streptococcus pneumoniae 7879-04]
gi|419449776|ref|ZP_13989771.1| dimethyladenosine transferase [Streptococcus pneumoniae 4075-00]
gi|419451912|ref|ZP_13991894.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP02]
gi|419474059|ref|ZP_14013906.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13430]
gi|419476306|ref|ZP_14016140.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14688]
gi|419478630|ref|ZP_14018452.1| dimethyladenosine transferase [Streptococcus pneumoniae GA18068]
gi|419482995|ref|ZP_14022780.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40563]
gi|419485186|ref|ZP_14024960.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43257]
gi|419487450|ref|ZP_14027211.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44128]
gi|419502646|ref|ZP_14042326.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47628]
gi|419509064|ref|ZP_14048714.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49542]
gi|419519704|ref|ZP_14059309.1| dimethyladenosine transferase [Streptococcus pneumoniae GA08825]
gi|419524321|ref|ZP_14063893.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13723]
gi|419528953|ref|ZP_14068492.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17719]
gi|421209737|ref|ZP_15666748.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070005]
gi|421221050|ref|ZP_15677885.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070425]
gi|421223299|ref|ZP_15680080.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070531]
gi|421225815|ref|ZP_15682551.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070768]
gi|421241433|ref|ZP_15697977.1| dimethyladenosine transferase [Streptococcus pneumoniae 2080913]
gi|421242348|ref|ZP_15698873.1| dimethyladenosine transferase [Streptococcus pneumoniae 2081074]
gi|421246109|ref|ZP_15702600.1| dimethyladenosine transferase [Streptococcus pneumoniae 2082170]
gi|421271412|ref|ZP_15722264.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR48]
gi|421273649|ref|ZP_15724488.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR55]
gi|421279743|ref|ZP_15730548.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17301]
gi|421288398|ref|ZP_15739158.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58771]
gi|421290536|ref|ZP_15741285.1| dimethyladenosine transferase [Streptococcus pneumoniae GA54354]
gi|421294987|ref|ZP_15745707.1| dimethyladenosine transferase [Streptococcus pneumoniae GA56113]
gi|421301812|ref|ZP_15752481.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19998]
gi|421305926|ref|ZP_15756579.1| dimethyladenosine transferase [Streptococcus pneumoniae GA62331]
gi|27151593|sp|Q97NN5.2|RSMA_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807887|sp|B8ZNY9.1|RSMA_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807891|sp|C1CTN9.1|RSMA_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|147928127|gb|EDK79145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68]
gi|147929973|gb|EDK80961.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72]
gi|183571617|gb|EDT92145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195]
gi|220675171|emb|CAR69755.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC
700669]
gi|225727338|gb|ACO23189.1| dimethyladenosine transferase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298239350|gb|ADI70481.1| dimethyladenosine transferase [Streptococcus pneumoniae
TCH8431/19A]
gi|327389149|gb|EGE87495.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04375]
gi|332072066|gb|EGI82553.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17570]
gi|353753761|gb|EHD34378.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44288]
gi|353755172|gb|EHD35778.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47281]
gi|353763595|gb|EHD44148.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49138]
gi|353769521|gb|EHD50038.1| dimethyladenosine transferase [Streptococcus pneumoniae 7286-06]
gi|353774442|gb|EHD54933.1| dimethyladenosine transferase [Streptococcus pneumoniae NP070]
gi|353789943|gb|EHD70331.1| dimethyladenosine transferase [Streptococcus pneumoniae GA18523]
gi|353794677|gb|EHD75030.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44378]
gi|353795227|gb|EHD75578.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44511]
gi|353797752|gb|EHD78084.1| dimethyladenosine transferase [Streptococcus pneumoniae NP170]
gi|353801370|gb|EHD81674.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07643]
gi|353804127|gb|EHD84413.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13455]
gi|353813439|gb|EHD93670.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14798]
gi|353815778|gb|EHD95992.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16121]
gi|353821112|gb|EHE01291.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16833]
gi|353828016|gb|EHE08161.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17371]
gi|353833401|gb|EHE13512.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19077]
gi|353834262|gb|EHE14366.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19451]
gi|353841425|gb|EHE21481.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41565]
gi|353848852|gb|EHE28863.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47360]
gi|353854733|gb|EHE34705.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47388]
gi|353859315|gb|EHE39267.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47688]
gi|353860594|gb|EHE40537.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47778]
gi|353863564|gb|EHE43487.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47976]
gi|353868731|gb|EHE48616.1| dimethyladenosine transferase [Streptococcus pneumoniae GA54644]
gi|353877851|gb|EHE57691.1| dimethyladenosine transferase [Streptococcus pneumoniae 5185-06]
gi|353879809|gb|EHE59631.1| dimethyladenosine transferase [Streptococcus pneumoniae 3063-00]
gi|353884892|gb|EHE64685.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP01]
gi|353885883|gb|EHE65668.1| dimethyladenosine transferase [Streptococcus pneumoniae GA08780]
gi|353900081|gb|EHE75642.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11663]
gi|379138770|gb|AFC95561.1| hypothetical protein MYY_1906 [Streptococcus pneumoniae ST556]
gi|379542114|gb|EHZ07278.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13499]
gi|379548924|gb|EHZ14037.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11856]
gi|379549687|gb|EHZ14791.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13430]
gi|379555688|gb|EHZ20753.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13723]
gi|379557886|gb|EHZ22924.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14688]
gi|379562965|gb|EHZ27971.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17719]
gi|379563908|gb|EHZ28906.1| dimethyladenosine transferase [Streptococcus pneumoniae GA18068]
gi|379569926|gb|EHZ34892.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19923]
gi|379578460|gb|EHZ43372.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40563]
gi|379581106|gb|EHZ45994.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43257]
gi|379585086|gb|EHZ49947.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44128]
gi|379598396|gb|EHZ63186.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47628]
gi|379610272|gb|EHZ75004.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49542]
gi|379611461|gb|EHZ76185.1| dimethyladenosine transferase [Streptococcus pneumoniae 8190-05]
gi|379612413|gb|EHZ77131.1| dimethyladenosine transferase [Streptococcus pneumoniae 7879-04]
gi|379616656|gb|EHZ81350.1| dimethyladenosine transferase [Streptococcus pneumoniae 5652-06]
gi|379617434|gb|EHZ82123.1| dimethyladenosine transferase [Streptococcus pneumoniae 7533-05]
gi|379621642|gb|EHZ86285.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP02]
gi|379621774|gb|EHZ86416.1| dimethyladenosine transferase [Streptococcus pneumoniae 4075-00]
gi|379639743|gb|EIA04283.1| dimethyladenosine transferase [Streptococcus pneumoniae GA08825]
gi|381308833|gb|EIC49676.1| dimethyladenosine transferase [Streptococcus pneumoniae SV36]
gi|381314024|gb|EIC54801.1| dimethyladenosine transferase [Streptococcus pneumoniae 459-5]
gi|381316819|gb|EIC57563.1| dimethyladenosine transferase [Streptococcus pneumoniae SV35]
gi|395572392|gb|EJG32989.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070005]
gi|395585528|gb|EJG45908.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070425]
gi|395586584|gb|EJG46952.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070531]
gi|395588508|gb|EJG48837.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070768]
gi|395606711|gb|EJG66814.1| dimethyladenosine transferase [Streptococcus pneumoniae 2080913]
gi|395611479|gb|EJG71551.1| dimethyladenosine transferase [Streptococcus pneumoniae 2081074]
gi|395616228|gb|EJG76239.1| dimethyladenosine transferase [Streptococcus pneumoniae 2082170]
gi|395866162|gb|EJG77294.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR48]
gi|395872964|gb|EJG84058.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR55]
gi|395878479|gb|EJG89544.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17301]
gi|395885514|gb|EJG96537.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58771]
gi|395886265|gb|EJG97282.1| dimethyladenosine transferase [Streptococcus pneumoniae GA54354]
gi|395892180|gb|EJH03172.1| dimethyladenosine transferase [Streptococcus pneumoniae GA56113]
gi|395897947|gb|EJH08900.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19998]
gi|395904355|gb|EJH15272.1| dimethyladenosine transferase [Streptococcus pneumoniae GA62331]
Length = 290
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|366054192|ref|ZP_09451914.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus suebicus KCTC 3549]
Length = 298
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G +KSLGQ+++ + + ++ +AA V D V+EIGPG G+LT L A V+A+E
Sbjct: 21 GLRAKKSLGQNFLTDLNVLSKIVSAADVGPEDNVIEIGPGIGALTEQLALAAGQVVALEV 80
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D ++ ++ E D +KV+ +D + I + + F+ S KVVAN+P+ I+T
Sbjct: 81 DTSLLPVLDEVLGEYDNVKVINQDVLDVDIAALIDREFD---DPSKPVKVVANLPYYITT 137
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
++ QLL +S++V++LQ+E A RL P T Y +++ V + + E F+VPR
Sbjct: 138 PILLQLLNTEVKWSKIVVMLQKEVAQRLAANPG--TKAYGTLSLTVQYKMDAELAFEVPR 195
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH-LCTSL 349
T F P P VD+A+V+ + ++ K F ++ F+ +RK L +LQ L
Sbjct: 196 TVFVPSPNVDSAIVSLEPRKKELAVKPDDEKLLFRLIKGCFSHRRKTLSNNLQSVLGKGA 255
Query: 350 EIEK 353
EI+K
Sbjct: 256 EIKK 259
>gi|347755376|ref|YP_004862940.1| dimethyladenosine transferase [Candidatus Chloracidobacterium
thermophilum B]
gi|347587894|gb|AEP12424.1| dimethyladenosine transferase [Candidatus Chloracidobacterium
thermophilum B]
Length = 291
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 121/238 (50%), Gaps = 11/238 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + + ++ AAA V D+V+EIGPG G+LT VLL A V+A E D+
Sbjct: 13 PRKRFGQHFLRDRHLLARIVAAAEVGPDDLVVEIGPGRGALTEVLLERAAGVIAFELDRD 72
Query: 175 MVGLVRERFAS----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
+ + RFA + VL+ D C + +S KVVAN+P+N+S
Sbjct: 73 LAAWLSVRFADRRWRLHVGDVLEADLAACVTEAGAAWGL-----TSAPVKVVANVPYNLS 127
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
T ++++LL +++++VL+LQ E RL + T +Y ++ V E F VP
Sbjct: 128 TPIVEKLLAARHLWTDIVLMLQREVVWRLAA-APGTKDYGYFSVVVQAACEVTRLFDVPP 186
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
F P PKV ++VV + P F +VS AF +RKML SL L S
Sbjct: 187 GAFHPPPKVMSSVVRLTPRPVAIMPP-ELMPYFCRVVSVAFEQRRKMLGGSLMRLGLS 243
>gi|406593242|ref|YP_006740421.1| dimethyladenosine transferase [Chlamydia psittaci NJ1]
gi|405789114|gb|AFS27856.1| dimethyladenosine transferase [Chlamydia psittaci NJ1]
Length = 278
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ QL + E C L + K G +VVAN+P++++T ++
Sbjct: 80 FE-------ETLKQLPIHLEITDACKYPLSQL----QDKRWQGKGRVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L + + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVRYAFKVSPGC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F P+P+V +AVV +K TK FFS+ +AF +RK+L +L+ L +
Sbjct: 187 FLPKPQVSSAVVHMTVKDRFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKERVF 245
Query: 353 KALGDVGLPATAAADYKFPITLPSTEYTLFME 384
+AL + +D P TL +Y E
Sbjct: 246 EALSQLNF-----SDKTRPETLSLDDYLKLFE 272
>gi|182684919|ref|YP_001836666.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14]
gi|303254092|ref|ZP_07340207.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455]
gi|303260358|ref|ZP_07346328.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293]
gi|303262506|ref|ZP_07348448.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292]
gi|303265137|ref|ZP_07351050.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397]
gi|303266001|ref|ZP_07351896.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457]
gi|303268067|ref|ZP_07353868.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458]
gi|387760073|ref|YP_006067051.1| dimethyladenosine transferase [Streptococcus pneumoniae INV200]
gi|418140329|ref|ZP_12777152.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13338]
gi|418181335|ref|ZP_12817903.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41688]
gi|419515477|ref|ZP_14055101.1| dimethyladenosine transferase [Streptococcus pneumoniae
England14-9]
gi|421296813|ref|ZP_15747519.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58581]
gi|421308189|ref|ZP_15758829.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60132]
gi|226732631|sp|B2IM67.1|RSMA_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|182630253|gb|ACB91201.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14]
gi|301802662|emb|CBW35428.1| dimethyladenosine transferase [Streptococcus pneumoniae INV200]
gi|302598925|gb|EFL65956.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455]
gi|302636406|gb|EFL66899.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292]
gi|302638524|gb|EFL68989.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293]
gi|302642427|gb|EFL72773.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458]
gi|302644442|gb|EFL74694.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457]
gi|302645354|gb|EFL75588.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397]
gi|353842161|gb|EHE22209.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41688]
gi|353904579|gb|EHE80047.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13338]
gi|379635164|gb|EHZ99724.1| dimethyladenosine transferase [Streptococcus pneumoniae
England14-9]
gi|395893799|gb|EJH04782.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58581]
gi|395906363|gb|EJH17262.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60132]
Length = 290
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMTFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|227501188|ref|ZP_03931237.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098]
gi|227216589|gb|EEI81993.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098]
Length = 280
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 141/244 (57%), Gaps = 10/244 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ +++ A V++ + VLEIGPG G++T + + V+AIE D ++
Sbjct: 23 KSLGQNFLVDKNFVEKIVDRADVKDTN-VLEIGPGIGTITYEMAKSAKKVVAIEIDSALL 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D K++ ED +K ++ + E S F KVV+N+P+ I+T +I++
Sbjct: 82 PIIEENMEEFDNFKLIHEDILKANLE----KIVEEEFSGEAF-KVVSNLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L+ +++ +++Q+E A R++ + + EY +++F+ +++E E VP++ F PQ
Sbjct: 137 LVTSKLPCTDMTIMVQKEVADRML-ATEKDKEYSSLSVFIKYFTEAEKITNVPKSVFMPQ 195
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALG 356
PK+D+ V+ KL++ D V +K F++V + FN +RK + SL ++ A
Sbjct: 196 PKIDSTVLKLKLRKYRD--DVDESK-LFAIVHAGFNKRRKTILNSLADAVDKEKLRLAFD 252
Query: 357 DVGL 360
+G+
Sbjct: 253 KLGI 256
>gi|398309127|ref|ZP_10512601.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus mojavensis RO-H-1]
Length = 292
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 128/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFKDCDEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEENLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ + D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLIRR---DGPAVDVENEAFFFQLIKASFAQRRK 237
>gi|15835248|ref|NP_297007.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
gi|270285420|ref|ZP_06194814.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
gi|270289434|ref|ZP_06195736.1| dimethyladenosine transferase [Chlamydia muridarum Weiss]
gi|301336817|ref|ZP_07225019.1| dimethyladenosine transferase [Chlamydia muridarum MopnTet14]
gi|27151610|sp|Q9PK40.1|RSMA_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|7190672|gb|AAF39462.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
Length = 277
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 152/270 (56%), Gaps = 21/270 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + +K++N + + K+L Q+++++ I ++ A A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLKSVNGRAK---KALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VL++ GA V+A+EKD S+ QL + E C + + SL + K
Sbjct: 59 ALSEVLVSQGANVIALEKDPMFE-------ESLSQLPIDIEITDAC--KYPLASLDD--K 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + + V +++Q+E A R+ P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPNRWKTVTVMIQDEVARRITANPG--DKDYSS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTS-TKSFFSMVSSA 330
+ +F+ F+++ +Y FKV F+P+P V +AVV ++ + D+P S FF++ +A
Sbjct: 166 LTVFLRFFADVQYAFKVSPNCFYPKPSVSSAVVHMRVHE--DFPLSGSEIDEFFALTRAA 223
Query: 331 FNGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
F +RK+L SL++L ++ + L +G
Sbjct: 224 FGQRRKLLANSLKNLYPKDKVFQVLEHLGF 253
>gi|408373906|ref|ZP_11171598.1| ribosomal RNA adenine dimethylase [Alcanivorax hongdengensis
A-11-3]
gi|407766194|gb|EKF74639.1| ribosomal RNA adenine dimethylase [Alcanivorax hongdengensis
A-11-3]
Length = 270
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 13/246 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + + D+L +Q GD ++EIGPG G+LT LL + +E D+ +
Sbjct: 7 RKRFGQHFLHDRNLVDRLVRTLGLQPGDTLVEIGPGRGALTYPLLEEMPHLHVVELDRDL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L+R+ S ++L + + D ++ F K + G +VV N+P+NIST +I
Sbjct: 67 IALLRQE-NSPERLTIHESDALRFD--------FTTLKPADGKLRVVGNLPYNISTPLIF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL S++ +LQ+E RL S T ++ ++I V ++ + +Y F VP F P
Sbjct: 118 HLLAQSTAISDMTFMLQKEVVDRLTA-SPGTRDWGRLSIMVQYHCQADYLFFVPPGAFSP 176
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
PKVD+AVV + YPA +V+ AF +RK +R L+ L ++ + E AL
Sbjct: 177 PPKVDSAVVRLIPHVSPPYPA-KDEAHLRRLVTQAFTQRRKAIRNGLKSLISAEQFE-AL 234
Query: 356 G-DVGL 360
G D GL
Sbjct: 235 GIDPGL 240
>gi|307128183|ref|YP_003880214.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B]
gi|418133429|ref|ZP_12770298.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11304]
gi|306485245|gb|ADM92114.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B]
gi|353804370|gb|EHD84653.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11304]
Length = 290
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|260888713|ref|ZP_05899976.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
gi|330839885|ref|YP_004414465.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
gi|260861582|gb|EEX76082.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
gi|329747649|gb|AEC01006.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
Length = 288
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 13/227 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AAA ++EGD VLEIGPG G+LT LL AGA V A+E D+ +
Sbjct: 25 KRLGQNFLVDGSVVKDIVAAAEIEEGDRVLEIGPGIGTLTQGLLEAGAHVTAVELDKKLP 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E A+ D L+++ D +K IR+ M + F KV AN+P+ I+T ++
Sbjct: 85 AVLAETLAAYDHLRIVPGDILKTDIRALM--------ENQPF-KVAANLPYYITTPILLA 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + +V ++Q+E A R++ P + Y +++ V +++EP +V +F P
Sbjct: 136 LLEQHLPITHIVTMVQKEVAERMIAAPGSKI--YGALSVAVQYHTEPRIVREVAPRSFIP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P+V ++V+ K K+ VT + FF + ++F +RK L +L
Sbjct: 194 APEVASSVIACK-KRGKPPVEVTDERMFFRVARASFGQRRKTLANAL 239
>gi|317126783|ref|YP_004093065.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522]
gi|315471731|gb|ADU28334.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522]
Length = 292
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 144/251 (57%), Gaps = 15/251 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ + ++ AAA V + V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDTNVLKRIVAAANVSQSTGVIEIGPGIGALTEQLAKEAKRVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E ++ + K++ +D +K ++ + FE + + VVAN+P+ ++T ++
Sbjct: 84 LPILKETLSAYEHTKIIHQDVLKADVQKVIKDEFEENEELA----VVANLPYYVTTPILM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q+E A R+ +P+ + Y ++I +Y++ E F VP+T F
Sbjct: 140 KLLEEKLPVRTIVVMIQKEVAERIAAKPN--SKNYGSLSIAAQYYADAETVFTVPKTVFV 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQHLCTSLE-- 350
PQP VD+A++ +++ P +T FF ++ ++F +RK + +L H ++L
Sbjct: 198 PQPNVDSAILRLSIREK---PPITVKDEAFFFEIIRASFAQRRKTILNNLAHHFSTLSKQ 254
Query: 351 -IEKALGDVGL 360
IE+ L + +
Sbjct: 255 TIEEILQSINI 265
>gi|335357755|ref|ZP_08549625.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus animalis KCTC 3501]
Length = 298
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 130/239 (54%), Gaps = 8/239 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+ S G +KSLGQ+++ + I +++ AAA V D V+EIGPG G+LT L V+
Sbjct: 18 MESYGLTFKKSLGQNFLTDINILNKIVAAAEVTPEDDVIEIGPGIGALTEQLAKNAHQVM 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ + A D + V+ +D +K + ++ L + K+VAN+P+
Sbjct: 78 ALEIDDRLIPVLADTLAPYDNVTVVHQDVLK----ADLVELIAKNFDGKHKIKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKF 286
I+T +I LL F +V+++Q+E A RL P T +Y +++ V + + + F
Sbjct: 134 YITTPIILHLLEAPVDFDRIVVMMQKEVADRLAAVPG--TKDYGSLSVAVQYEMDAKVAF 191
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
VP+T F PQPKVD+A++ + K Y V K F MV F +RK L +LQ +
Sbjct: 192 IVPKTVFIPQPKVDSAIIVLEKKAVQTYRPV-DEKFFKQMVKGIFLHRRKSLWNNLQGM 249
>gi|295108631|emb|CBL22584.1| dimethyladenosine transferase [Ruminococcus obeum A2-162]
Length = 290
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 15/264 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L G +K GQ++++++ + D++ A+ + + D VLEIGPG G++T L ++
Sbjct: 12 TIEVLQKYGFVFQKRFGQNFLIDTHVLDRIIQASEITKDDFVLEIGPGIGTMTQYLADSA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D ++ ++++ D + V+ D +K IR K+ KVVA
Sbjct: 72 REVTAVEIDDALIPILKDTLKEWDNVNVIHGDILKTDIRK-----IADEKNQGRPIKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I L + +++Q+E A R+ + + +Y +++ V +Y++PE
Sbjct: 127 NLPYYITTPIIMGLFESHVPVDSITVMVQKEVADRM-QTGPGSKDYGALSLAVQYYAKPE 185
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST--KSFFSMVSSAFNGKRKMLRKS 341
VP F P+PKV +AV+ Q P VT+ K F ++ ++FN +RK L
Sbjct: 186 IVANVPPNCFMPRPKVGSAVIRLTRHQN---PPVTAKDEKLMFRIIRASFNQRRKTLANG 242
Query: 342 LQHL----CTSLEIEKALGDVGLP 361
L++ T ++E A+ + GLP
Sbjct: 243 LKNSQELNYTKEQVEAAITECGLP 266
>gi|421766424|ref|ZP_16203198.1| Dimethyladenosine transferase [Lactococcus garvieae DCC43]
gi|407625192|gb|EKF51907.1| Dimethyladenosine transferase [Lactococcus garvieae DCC43]
Length = 295
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 8/229 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITATAELSDQVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKTL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D +++ D +K + H+ + K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETLAPYDNFQLVNADVLKVDMHEHIKNF----KNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y E + F VPRT F
Sbjct: 143 HLIESKIPFTEFVVMMQKEVADRIAAKPS--TKAYGSLSIAVQYYMEAQVAFTVPRTVFV 200
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P P VD+A++ ++ AV FF + S F +RK L +LQ
Sbjct: 201 PAPNVDSAILKMT-RREQPLVAVKDEDFFFKTMHSTFVHRRKTLMNNLQ 248
>gi|302873237|ref|YP_003841870.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
gi|307688596|ref|ZP_07631042.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
gi|302576094|gb|ADL50106.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
Length = 282
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 13/246 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + + + A V E D+V+EIGPG G+LT LL V+AIE D ++
Sbjct: 19 KSLGQNFLTDDSVLNDIVNGAEVNENDVVIEIGPGVGTLTKELLGKAKKVIAIEVDSSLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E D ++ +D K F K+VAN+P+ ++T +I
Sbjct: 79 PILQEELKEFDNFTLIHKDATKVD--------FNELIEGEDTVKIVANLPYYVTTPIITD 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F+ + +++Q+E A R+ PS + EY + + V +Y + + VP + F P
Sbjct: 131 LLNKKYNFTSITVMIQKEVADRINANPS--SKEYGALTLLVQYYCDTKIVRVVPPSCFIP 188
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKA 354
QPKVD+ V+ K V + FF ++ +FN +RK L ++ L E +EKA
Sbjct: 189 QPKVDSTVIRLD-KLPAPRAVVEDEELFFRIIRDSFNMRRKTLWNGMKGLGLEKELLEKA 247
Query: 355 LGDVGL 360
D +
Sbjct: 248 FADADI 253
>gi|406576762|ref|ZP_11052387.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD6S]
gi|419817063|ref|ZP_14341233.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD4S]
gi|404460727|gb|EKA06971.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD6S]
gi|404466449|gb|EKA11785.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD4S]
Length = 290
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 139/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDNQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A ++A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEIMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTDEVKEKLTKALDQAGL 264
>gi|150387987|ref|YP_001318036.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
gi|166987687|sp|A6TJK9.1|RSMA_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|149947849|gb|ABR46377.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
Length = 287
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 132/242 (54%), Gaps = 16/242 (6%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
KA+ K +F KSLGQ+++++ I + + A +Q D V+EIGPG G+LT +
Sbjct: 11 KAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGTLTQFIAEKAH 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+AIE D++++ +++ A ++V+ +D +K + + FE + KV+AN
Sbjct: 71 KVVAIEIDRNLIPILKHTLADYQNVEVINQDVLKVDLHQLIADKFEGKP-----VKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
+P+ ++T ++ + L +V+++Q+E A+R+ + T +Y ++I V +Y PE
Sbjct: 126 LPYYVTTPIVMRFLEEKVPVDSLVIMIQKEVAVRM-QAGPGTKDYGALSIAVQYYCNPEI 184
Query: 285 KFKVPRTNFFPQPKVDAAVVTFKLKQATDYP----AVTSTKSFFSMVSSAFNGKRKMLRK 340
KVP + F PQPKV++ V+ ++ YP V F++V AF +RK L
Sbjct: 185 LLKVPPSVFIPQPKVESIVIKLQV-----YPEPKVKVERDDLMFALVKDAFGKRRKTLLN 239
Query: 341 SL 342
+L
Sbjct: 240 AL 241
>gi|315924856|ref|ZP_07921073.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621755|gb|EFV01719.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC
23263]
Length = 295
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 123/231 (53%), Gaps = 13/231 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQ+++++ I D++A A + D V+EIGPG G+LT L V+A+E D ++
Sbjct: 22 KRFGQNFLIDDHILDKIARAGDLTPTDTVIEIGPGIGTLTRELSARAGQVIAVEIDHKLI 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ E A + V+ D +K + + +L + KVVAN+P+ I+T ++ Q
Sbjct: 82 PALGETLADCGNVHVVNADVLK----TDLAALVAEAAPGTARLKVVANLPYYITTPIMMQ 137
Query: 237 LL----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
LL P G +++V L+Q E R+ P + Y ++I +Y+ PE F VP T
Sbjct: 138 LLETRWPDGVALAQMVFLVQREVGERICAAPGGKI--YGSLSIACQYYARPEIAFAVPAT 195
Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
F P+PKVD+ V+ +K+AT A + FF +V +AF +RK L SL
Sbjct: 196 VFMPRPKVDSVVIA--MKKATPPYAPSDPDQFFRVVKAAFMNRRKTLINSL 244
>gi|238922667|ref|YP_002936180.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656]
gi|238874339|gb|ACR74046.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656]
Length = 288
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 146/270 (54%), Gaps = 15/270 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ I +++ +A + + D++LEIGPG G++T L +
Sbjct: 10 TIEVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCESA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D +++ ++++ + D +KV+ +D +K I +L E + KVVA
Sbjct: 70 RQVIAVEIDTNLIPILKDTLSEYDNVKVINDDILKVDIN----ALAEEYNNGKPI-KVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I L + +++Q+E A R+ + + +Y +++ V +YS PE
Sbjct: 125 NLPYYITTPIIMGLFESHVPIDSITIMVQKEVADRM-QAAPGKKDYGALSLAVQYYSHPE 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKL--KQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
VP + F PQPKV ++V++ K K D V K F ++ ++FN +RK L
Sbjct: 184 IVVNVPPSCFMPQPKVGSSVISLKRYEKPVVD---VEDEKLMFKIIRASFNQRRKTLANG 240
Query: 342 LQHL----CTSLEIEKALGDVGLPATAAAD 367
L + T +I++++ +G+P +
Sbjct: 241 LNNFGGMGLTKEQIQQSIEALGVPVNVRGE 270
>gi|172037411|ref|YP_001803912.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51142]
gi|354553707|ref|ZP_08973013.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51472]
gi|254807863|sp|B1WRJ7.1|RSMA_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|171698865|gb|ACB51846.1| rRNA dimethyladenosine transferase [Cyanothece sp. ATCC 51142]
gi|353554424|gb|EHC23814.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51472]
Length = 270
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 139/252 (55%), Gaps = 14/252 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +Q+ AA +++ D +LEIGPGTG LT LL +++A+E D
Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPLVQSLIAVELDWD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + D +LQ D +K I + ++ KVVANIP+NI++ ++
Sbjct: 64 LCKKLVKSLGDEDNFLLLQGDILKLDIATEA----QQFPKFLPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
+LL P + +VLL+Q+E A R++ P + Y ++I + + ++ Y V
Sbjct: 120 DKLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYPG--SKNYGALSIKMQYLADCNYICDV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P+ +F+P PKVD+AV+TF+ + + + T+ K ++++ F+ +RKMLR +LQ L
Sbjct: 178 PKKSFYPPPKVDSAVITFRPRSLLN--SATNPKYLETLINLGFSSRRKMLRNNLQSLIDR 235
Query: 349 LEIEKALGDVGL 360
+ + L ++ L
Sbjct: 236 DLLTEFLTEIDL 247
>gi|417935029|ref|ZP_12578349.1| dimethyladenosine transferase [Streptococcus mitis bv. 2 str.
F0392]
gi|340771599|gb|EGR94114.1| dimethyladenosine transferase [Streptococcus mitis bv. 2 str.
F0392]
Length = 290
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNKDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPNPAVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTDEVKDKLTKALDQAGL 264
>gi|255658924|ref|ZP_05404333.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544]
gi|260848874|gb|EEX68881.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544]
Length = 292
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 134/243 (55%), Gaps = 13/243 (5%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
T+ L + G K LGQ++++++ I + AA ++ GD VLEIGPG G+LT L
Sbjct: 17 EVTLHILKAFGLRMSKKLGQNFLIDARIVQGIVEAAEIEPGDRVLEIGPGIGTLTQGLAE 76
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
AGA V A+E D+ + +++E + D ++++ D +K +I M + F KV
Sbjct: 77 AGADVTAVELDKKLPTVLKETLKAYDNVRIVPGDILKVNIPEIM--------GDAPF-KV 127
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
AN+P+ I+T ++ LL + +V ++Q E A R+ +P R Y +++ V +Y+
Sbjct: 128 AANLPYYITTPILMTLLERRLPITHMVTMVQREVAERMTAKPGSRI--YGALSVAVQYYT 185
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
EP+ VP +F P P+V + VV+ ++++ AV K FF +V +AF +RK L
Sbjct: 186 EPQIVLDVPPRSFIPAPEVMSVVVSCRVRKEPAV-AVQDEKLFFRVVKAAFGQRRKTLMN 244
Query: 341 SLQ 343
+L+
Sbjct: 245 ALK 247
>gi|427728682|ref|YP_007074919.1| dimethyladenosine transferase [Nostoc sp. PCC 7524]
gi|427364601|gb|AFY47322.1| dimethyladenosine transferase [Nostoc sp. PCC 7524]
Length = 274
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 12/258 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA D +LEIGPGTG LT LL ++LA+E D+
Sbjct: 4 PRKYFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPLVQSLLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++++ + ++ + KVVANIP+NI+ +I
Sbjct: 64 LCELLAKQLGKKENFLLLQGDFLTLDLDTNLVAFPKFQQPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P F +VLL+Q+E A RL + + + +++ V + +E E VP
Sbjct: 120 EKLLGTITNPNPQPFDSIVLLIQKEVAERLYAKA-GSKTFGALSVRVQYLAECELICHVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F+P PKVD+AVV + +Q PA K ++V F KRKMLR +LQ +
Sbjct: 179 AGAFYPPPKVDSAVVRLRPRQIA-TPA-NDPKRLETLVKLGFAEKRKMLRNNLQSVVDRD 236
Query: 350 EIEKALGDVGLPATAAAD 367
+ + L + + A A+
Sbjct: 237 RLSQLLEQLNINPQARAE 254
>gi|321313712|ref|YP_004205999.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus subtilis BSn5]
gi|320019986|gb|ADV94972.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus subtilis BSn5]
Length = 292
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLVLR---DGPAVDVENESFFFQLIKASFAQRRK 237
>gi|428772442|ref|YP_007164230.1| dimethyladenosine transferase [Cyanobacterium stanieri PCC 7202]
gi|428686721|gb|AFZ46581.1| dimethyladenosine transferase [Cyanobacterium stanieri PCC 7202]
Length = 273
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 145/261 (55%), Gaps = 20/261 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQH++ + + + A + +GD +LEIGPGTG LT +L+ +LAIE D+ +
Sbjct: 6 KKKFGQHWLKSENALNNIIRTAQLSKGDRILEIGPGTGVLTERMLSYVDKLLAIEIDRDL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ +++ D +L+ DF++ I ++L+ F + S + KVVANIP+NI+ +I+
Sbjct: 66 CKLLVKKYGERDNFLLLEGDFLELDI-DNILNNF---PNFSNYNKVVANIPYNITGPIIE 121
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+LL P +VLL+Q+E RLV EP+ + Y +++ V + ++ E VP
Sbjct: 122 KLLGTIANPNPKPLESIVLLIQKEVGDRLVAEPNNKV--YGALSLKVQYLADCEIACLVP 179
Query: 290 RTNFFPQPKVDAAVVTF---KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
+F P+PKVD+ VV KL++ + P T ++ F +RKML+ +L+ L
Sbjct: 180 AKDFSPRPKVDSVVVKITPRKLEKEVNNPRFLET-----IIKLGFASRRKMLKNNLKSLV 234
Query: 347 TSLEIEKALGDVGLPATAAAD 367
+ ++E L ++ L A A+
Sbjct: 235 DTDKLENILTELNLNPLARAE 255
>gi|238855589|ref|ZP_04645891.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3]
gi|260664781|ref|ZP_05865632.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US]
gi|238831806|gb|EEQ24141.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3]
gi|260561264|gb|EEX27237.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US]
Length = 294
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 132/251 (52%), Gaps = 18/251 (7%)
Query: 114 FPRKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
F +K+LGQ+++++ ++IND L AA + D VLEIGPG GSLT +L GA VLA E D
Sbjct: 23 FAKKNLGQNFLISLNKINDILDAAE-IDGDDQVLEIGPGIGSLTEQMLLRGAKVLAYEID 81
Query: 173 QHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
Q + ++ D K++ +D +K ++ + + F+ K KVVAN+
Sbjct: 82 QDLPEILHNELPQKIGDKYLDDVFKLVMKDILKADFKADIGNFFDLNKP----VKVVANL 137
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
P+ I+T +I L F + L++Q+E A RL S EY P+ IFV +
Sbjct: 138 PYYITTPIIFALAKSDLAFESLTLMMQKEVAERLCASS-GNKEYGPLTIFVQTQMSVKMA 196
Query: 286 FKVPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
V TNF PQPKVD+AVV K L Q D V T +F +V F+ +RK L +L+
Sbjct: 197 VMVDHTNFNPQPKVDSAVVVLKPLVQKVD---VGDTDNFDHVVKMCFSQRRKTLNNNLKS 253
Query: 345 LCTSLEIEKAL 355
L E K L
Sbjct: 254 LVKDSEERKKL 264
>gi|153811992|ref|ZP_01964660.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174]
gi|149831891|gb|EDM86977.1| dimethyladenosine transferase [Ruminococcus obeum ATCC 29174]
Length = 290
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 138/262 (52%), Gaps = 11/262 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L G +K GQ++++++ + D++ A+ + + D VLEIGPG G++T L +A
Sbjct: 12 TIEVLQKYGFVFQKRFGQNFLIDTRVLDRIIEASEITKDDFVLEIGPGIGTMTQYLADAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D ++ ++++ D + V+ D +K IR K+ KVVA
Sbjct: 72 REVTAVEIDDALIPILQDTLKEWDNVSVIHGDILKTDIRK-----IADEKNQGRPIKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I L + +++Q+E A R+ + + +Y +++ V +Y++PE
Sbjct: 127 NLPYYITTPIIMGLFESHVPVDSITVMVQKEVADRM-QTGPGSKDYGALSLAVQYYAKPE 185
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
VP F P+PKV +AV+ Q A K F ++ ++FN +RK L L+
Sbjct: 186 IVANVPPNCFMPRPKVGSAVIRLTRHQNPPVQA-KDEKLMFRIIRASFNQRRKTLANGLK 244
Query: 344 H----LCTSLEIEKALGDVGLP 361
+ T ++E+A+ + GLP
Sbjct: 245 NSQELQFTKEQVEQAITECGLP 266
>gi|389577031|ref|ZP_10167059.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6]
gi|389312516|gb|EIM57449.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6]
Length = 299
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 139/269 (51%), Gaps = 11/269 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L G +K GQ+++++ + +++ AA + E D V+EIGPG G+LT L
Sbjct: 20 TIEILQKYGFRFQKKFGQNFLIDPHVLEKIVRAADISEDDCVMEIGPGIGTLTQYLARYA 79
Query: 164 ATVLAIEKDQHMVGLVRER-FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V A+E D++++ ++ E D + V+ ED +K ++ L E KVV
Sbjct: 80 REVFAVEIDKNLIPILTEDTLKDWDNVTVINEDCLKVDMK----QLVEEHNGGKP-VKVV 134
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
AN+P+ I+T ++ +LL F + +++Q+E A R+ + + +Y +++ V +Y+ P
Sbjct: 135 ANLPYYITTPILMELLEKHVPFESITVMVQKEVADRM-QAGPGSKDYGALSLAVQYYTVP 193
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKM----L 338
E VP F P+P V +AV+ K + + V F ++ ++F +RK L
Sbjct: 194 EIMANVPPNCFIPRPNVGSAVIRLKGRTEENRVQVQDEHLMFRLIRASFAQRRKTLMNGL 253
Query: 339 RKSLQHLCTSLEIEKALGDVGLPATAAAD 367
R S + + EIEK + D GLPA +
Sbjct: 254 RNSQELDFSKEEIEKVIQDCGLPAAVRGE 282
>gi|386756622|ref|YP_006229838.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus sp.
JS]
gi|449092755|ref|YP_007425246.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
XF-1]
gi|384929904|gb|AFI26582.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. JS]
gi|449026670|gb|AGE61909.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
XF-1]
Length = 292
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENESFFFQLIKASFAQRRK 237
>gi|418081628|ref|ZP_12718836.1| dimethyladenosine transferase [Streptococcus pneumoniae 6735-05]
gi|353750754|gb|EHD31391.1| dimethyladenosine transferase [Streptococcus pneumoniae 6735-05]
Length = 290
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLMPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQQEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|291526963|emb|CBK92549.1| dimethyladenosine transferase [Eubacterium rectale M104/1]
Length = 288
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 145/270 (53%), Gaps = 15/270 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ I +++ +A + + D++LEIGPG G++T L +
Sbjct: 10 TIEVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCESA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D +++ ++++ + D +KV+ +D +K I +L E + KVVA
Sbjct: 70 RQVIAVEIDTNLIPILKDTLSEYDNVKVINDDILKVDIN----ALAEEYNNGKPI-KVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I L + +++Q+E A R+ + +Y +++ V +YS PE
Sbjct: 125 NLPYYITTPIIMGLFESHVPIDSITIMVQKEVADRM-QAGPGKKDYGALSLAVQYYSHPE 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKL--KQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
VP + F PQPKV ++V++ K K D V K F ++ ++FN +RK L
Sbjct: 184 IVVNVPPSCFMPQPKVGSSVISLKRYEKPVVD---VDDEKLMFKIIRASFNQRRKTLANG 240
Query: 342 LQHL----CTSLEIEKALGDVGLPATAAAD 367
L + T +I++++ +G+P +
Sbjct: 241 LNNFGGMGLTKEQIQQSIEALGVPVNVRGE 270
>gi|406594510|ref|YP_006741460.1| dimethyladenosine transferase [Chlamydia psittaci MN]
gi|405782942|gb|AFS21690.1| dimethyladenosine transferase [Chlamydia psittaci MN]
Length = 278
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDRVLEIGPGFGALTEVLVNQGAHVVALEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ QL + E C L + K G +VVAN+P++++T ++
Sbjct: 80 FE-------ETLKQLPIHLEITDACKYPLSQL----QDKGWQGKGRVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L + + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVRYAFKVSPGC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F P+P+V +AVV +K TK FFS+ +AF +RK+L +L+ L +
Sbjct: 187 FLPKPQVSSAVVHMTVKDRFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKERVF 245
Query: 353 KALGDVGLPATAAADYKFPITLPSTEYTLFME 384
+AL + +D P TL +Y E
Sbjct: 246 EALSQLNF-----SDKTRPETLSLDDYLKLFE 272
>gi|282896422|ref|ZP_06304443.1| 16S rRNA dimethylase [Raphidiopsis brookii D9]
gi|281198710|gb|EFA73590.1| 16S rRNA dimethylase [Raphidiopsis brookii D9]
Length = 281
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 135/249 (54%), Gaps = 18/249 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K QH++ + + + + AA Q D +LEIGPGTG LT LL ++LA+E D+
Sbjct: 4 PQKQFAQHWLRSEKALNSIVKAAECQANDRILEIGPGTGILTKRLLPLVDSLLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL--FERRKSSSGFAKVVANIPFNISTD 232
+ L+ ++ + + +LQ DF+ I S + + F+R+ KVVANIP+NI+
Sbjct: 64 LCELLAKKLGARENFLLLQGDFLTLGIASQLTAFPKFQRQN------KVVANIPYNITGP 117
Query: 233 VIKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
+I++LL P F +VLL+Q+E A RL +P R + +++ V + +E E+
Sbjct: 118 IIEKLLGTIADPNPQPFDSIVLLIQKEVAQRLYAKPGSRN--FGALSVRVQYLAECEFIC 175
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
VP + F+P PKVD+ VV L + + A K +M+ F KRKMLR +LQ +
Sbjct: 176 TVPASAFYPPPKVDSVVVRL-LPRNMEIGA-NDPKLLENMLKLGFGCKRKMLRNNLQSVI 233
Query: 347 TSLEIEKAL 355
+ K L
Sbjct: 234 DRESLTKLL 242
>gi|417793672|ref|ZP_12440944.1| dimethyladenosine transferase [Streptococcus oralis SK255]
gi|334272327|gb|EGL90693.1| dimethyladenosine transferase [Streptococcus oralis SK255]
Length = 290
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + ++ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQYIQNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVKDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|291520367|emb|CBK75588.1| dimethyladenosine transferase [Butyrivibrio fibrisolvens 16/4]
Length = 284
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 8/239 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T L + G +K GQ+++++ + D + AA + + D VLEIGPG G++T L
Sbjct: 10 TKAVLEAHGFSFQKKYGQNFLIDGNVLDNIIDAAGITKDDFVLEIGPGIGTMTQRLCEEA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + ++ V+ +D +K I++ K+ KVVA
Sbjct: 70 REVVAVEIDKTLIPILDDTLSTYKNWTVINQDILKVDIKA-----LADEKNGGKPIKVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I L + +++Q+E A R+ E + EY +++ V +YS PE
Sbjct: 125 NLPYYITTPIIMGLFESHVPLESITIMVQKEVADRMQE-GPGSKEYGALSLAVQYYSNPE 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
+VP + F PQPKV + V+T K + P K F ++ ++FN +RK L+ L
Sbjct: 184 IVCEVPPSCFMPQPKVASTVITLKCHEKP--PVECDEKLLFQIIRASFNQRRKTLQNGL 240
>gi|289423351|ref|ZP_06425159.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
gi|429728453|ref|ZP_19263176.1| dimethyladenosine transferase [Peptostreptococcus anaerobius VPI
4330]
gi|289156282|gb|EFD04939.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
gi|429149682|gb|EKX92653.1| dimethyladenosine transferase [Peptostreptococcus anaerobius VPI
4330]
Length = 293
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 128/230 (55%), Gaps = 9/230 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I D++ + +GD V+E+GPG G+LT L + V+ +E D+ ++
Sbjct: 24 KSLGQNFLIDDNIIDKIVDGSLAGQGDKVIEVGPGIGTLTRELASRSEKVMVVEIDKKLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + D + ++ ED +K I+ + + G K+VAN+P+ I+T +I +
Sbjct: 84 PILGDTLSDFDNVTIVNEDIMKADIKDLI-----DKNLDGGPVKLVANLPYYITTPIIMR 138
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L +++V+++Q+E A R+ P + ++ +++ V FY + E KVPR F P
Sbjct: 139 FLEEDINVTDIVVMVQKEVAERMNANPGKK--DFGALSVAVQFYCDTEIVAKVPRHLFVP 196
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
QP VD+ V+ +++ Y V FF +V ++F +RK L SL +
Sbjct: 197 QPNVDSIVIALRVRPERKY-KVEDEDLFFKIVKASFGQRRKTLLNSLTSM 245
>gi|291526466|emb|CBK92053.1| dimethyladenosine transferase [Eubacterium rectale DSM 17629]
Length = 292
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 145/270 (53%), Gaps = 15/270 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ I +++ +A + + D++LEIGPG G++T L +
Sbjct: 10 TIEVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCESA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D +++ ++++ + D +KV+ +D +K I +L E + KVVA
Sbjct: 70 RQVIAVEIDTNLIPILKDTLSEYDNVKVINDDILKVDIN----ALAEEYNNGKPI-KVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I L + +++Q+E A R+ + +Y +++ V +YS PE
Sbjct: 125 NLPYYITTPIIMGLFESHVPIDSITIMVQKEVADRM-QAGPGKKDYGALSLAVQYYSHPE 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKL--KQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
VP + F PQPKV ++V++ K K D V K F ++ ++FN +RK L
Sbjct: 184 IVVNVPPSCFMPQPKVGSSVISLKRYEKPVVD---VDDEKLMFKIIRASFNQRRKTLANG 240
Query: 342 LQHL----CTSLEIEKALGDVGLPATAAAD 367
L + T +I++++ +G+P +
Sbjct: 241 LNNFGGMGLTKEQIQQSIEALGVPVNVRGE 270
>gi|292670425|ref|ZP_06603851.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541]
gi|292647835|gb|EFF65807.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541]
Length = 292
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 14/252 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + GD VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLIDVGVVRGIVEAAELAPGDTVLEIGPGIGTLTQGLAETGARVVAVEIDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + ++ D +K +I +L L E + KV AN+P+ I+T +I
Sbjct: 87 RVLAETLKGYDNVTIVPGDILKLNI-PEILGLKEGERF-----KVAANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A+R+ P + +Y ++I V +++EP VP F P
Sbjct: 141 LLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSIAVQYFTEPRIVMDVPPRAFMP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
P+V +AVV ++++ T A K FF ++ +AF +RKML +L + E+ +A
Sbjct: 199 APEVTSAVVACRVRE-TPAAAPADEKLFFRLIRAAFGQRRKMLLNALTGAGLTKEMSRA- 256
Query: 356 GDVGLPATAAAD 367
GL A A+
Sbjct: 257 ---GLSAAGIAE 265
>gi|269120656|ref|YP_003308833.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386]
gi|268614534|gb|ACZ08902.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386]
Length = 276
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 133/246 (54%), Gaps = 16/246 (6%)
Query: 105 IKALNSKGR---FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+K LN+ G +K GQ+++ N I +++ + A + + D V+EIGPG G LT L
Sbjct: 1 MKILNNTGEKNYRTKKKYGQNFLENKVILEEIFSYADINKTDTVIEIGPGLGFLTESLAE 60
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V A E D +V ++ E+F+ ++ LK++ DF+ + + E+ K+ KV
Sbjct: 61 KAGQVYAFEIDDDLVKILSEKFSKVENLKIIHTDFMDYDLS----EIVEKEKN----IKV 112
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL--VEPSLRTSEYRPINIFVNFY 279
VANIP+ I++ ++ +L+ D E+ +++Q+E A R+ V PS S+ + V F+
Sbjct: 113 VANIPYYITSPIVGKLIKYRDSIDEIYIMVQKEVAERISAVSPS---SDISLLTHAVQFF 169
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
EY F V + F P PKVD+A + KL + +Y +F + +AF+ KRK L
Sbjct: 170 GNAEYLFTVKKELFNPVPKVDSAFLGIKLYKDREYEKQIDEAEYFKYLKAAFSNKRKSLG 229
Query: 340 KSLQHL 345
++++L
Sbjct: 230 NNMKNL 235
>gi|334338746|ref|YP_004543726.1| dimethyladenosine transferase [Desulfotomaculum ruminis DSM 2154]
gi|334090100|gb|AEG58440.1| dimethyladenosine transferase [Desulfotomaculum ruminis DSM 2154]
Length = 292
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 137/244 (56%), Gaps = 19/244 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N+ G RK+LGQ++++++ I D++ AA + E D+ EIGPG G LT L + VL
Sbjct: 14 INAHGFKVRKALGQNFLMDANIIDKIVQAANLSEQDLAFEIGPGLGVLTRRLARSAGKVL 73
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER---RKSSSGFA----- 219
A+E D++++ +++E A +V+ D +K F+R K+ F
Sbjct: 74 AVEIDRNLLPILKETLADSAGAEVIHGDALKLD--------FDRLASEKTGGIFGSRARA 125
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
K+VAN+P+ I+T ++ LL G +V+++Q+E A RL P +Y +++ V +
Sbjct: 126 YKLVANLPYYITTPLLIHLLTGGFNLECMVVMMQKEVADRLKAPP-GGKDYGSLSVLVQY 184
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
+++PE +VP+T F+P P+V++ V+ + A A+ ++FF +V +AF +RK L
Sbjct: 185 FTQPEVVARVPKTVFYPAPEVESTVIRLTRRPAPPV-ALDHEETFFKVVRAAFGQRRKTL 243
Query: 339 RKSL 342
+L
Sbjct: 244 LNAL 247
>gi|168494774|ref|ZP_02718917.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06]
gi|225855474|ref|YP_002736986.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA]
gi|418074828|ref|ZP_12712076.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11184]
gi|418079429|ref|ZP_12716650.1| dimethyladenosine transferase [Streptococcus pneumoniae 4027-06]
gi|418090350|ref|ZP_12727502.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43265]
gi|418099314|ref|ZP_12736409.1| dimethyladenosine transferase [Streptococcus pneumoniae 6901-05]
gi|418106117|ref|ZP_12743171.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44500]
gi|418115503|ref|ZP_12752488.1| dimethyladenosine transferase [Streptococcus pneumoniae 5787-06]
gi|418117661|ref|ZP_12754629.1| dimethyladenosine transferase [Streptococcus pneumoniae 6963-05]
gi|418135761|ref|ZP_12772613.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11426]
gi|418174403|ref|ZP_12811013.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41277]
gi|418183527|ref|ZP_12820083.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43380]
gi|418217435|ref|ZP_12844113.1| dimethyladenosine transferase [Streptococcus pneumoniae
Netherlands15B-37]
gi|419432374|ref|ZP_13972502.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP05]
gi|419434604|ref|ZP_13974720.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40183]
gi|419441176|ref|ZP_13981218.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40410]
gi|419465375|ref|ZP_14005265.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04175]
gi|419469786|ref|ZP_14009652.1| dimethyladenosine transferase [Streptococcus pneumoniae GA06083]
gi|419498357|ref|ZP_14038061.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47522]
gi|419535468|ref|ZP_14074965.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17457]
gi|421281976|ref|ZP_15732771.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04672]
gi|421310388|ref|ZP_15761012.1| dimethyladenosine transferase [Streptococcus pneumoniae GA62681]
gi|254807889|sp|C1CGR5.1|RSMA_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|183575340|gb|EDT95868.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06]
gi|225722617|gb|ACO18470.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA]
gi|353745944|gb|EHD26609.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11184]
gi|353746049|gb|EHD26713.1| dimethyladenosine transferase [Streptococcus pneumoniae 4027-06]
gi|353760271|gb|EHD40849.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43265]
gi|353768084|gb|EHD48610.1| dimethyladenosine transferase [Streptococcus pneumoniae 6901-05]
gi|353774989|gb|EHD55473.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44500]
gi|353784005|gb|EHD64427.1| dimethyladenosine transferase [Streptococcus pneumoniae 5787-06]
gi|353787776|gb|EHD68177.1| dimethyladenosine transferase [Streptococcus pneumoniae 6963-05]
gi|353836900|gb|EHE16987.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41277]
gi|353847531|gb|EHE27553.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43380]
gi|353869923|gb|EHE49802.1| dimethyladenosine transferase [Streptococcus pneumoniae
Netherlands15B-37]
gi|353900383|gb|EHE75939.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11426]
gi|379536249|gb|EHZ01439.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04175]
gi|379543315|gb|EHZ08466.1| dimethyladenosine transferase [Streptococcus pneumoniae GA06083]
gi|379562669|gb|EHZ27679.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17457]
gi|379575308|gb|EHZ40241.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40183]
gi|379576461|gb|EHZ41386.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40410]
gi|379598250|gb|EHZ63043.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47522]
gi|379627750|gb|EHZ92360.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP05]
gi|395879482|gb|EJG90541.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04672]
gi|395908573|gb|EJH19451.1| dimethyladenosine transferase [Streptococcus pneumoniae GA62681]
Length = 290
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLMPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|409385600|ref|ZP_11238177.1| Dimethyladenosine transferase [Lactococcus raffinolactis 4877]
gi|399207015|emb|CCK19092.1| Dimethyladenosine transferase [Lactococcus raffinolactis 4877]
Length = 290
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 129/244 (52%), Gaps = 6/244 (2%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KSLGQ+++ ++ I ++ A + V+EIGPG G+LT +
Sbjct: 5 DYRVTKAILDRHGFSFKKSLGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFI 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K +++H+ + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVTVINEDVLKADLQTHI----RKFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R + + T Y ++I V +Y
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFTEFVVMMQKEVADR-ISAAPNTKAYGSLSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ F VP+T F P P VD+A++ + A V+ FF + AF +RK L
Sbjct: 180 MTAQVAFIVPKTVFVPAPNVDSAILKMTRRDAP-MVEVSDEDFFFKVAKLAFLHRRKTLW 238
Query: 340 KSLQ 343
+LQ
Sbjct: 239 NNLQ 242
>gi|295694738|ref|YP_003587976.1| dimethyladenosine transferase [Kyrpidia tusciae DSM 2912]
gi|295410340|gb|ADG04832.1| dimethyladenosine transferase [Kyrpidia tusciae DSM 2912]
Length = 293
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 134/246 (54%), Gaps = 15/246 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSLGQH++++ I +++ AAA + + VLEIGPG G+LT L A VLA+EKD+
Sbjct: 22 PKKSLGQHFLVDDRILERIVAAADLSGREAVLEIGPGLGALTLRLAQAAWRVLAVEKDRS 81
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ E ++V D ++ + F R +VVAN+P+ ++T V+
Sbjct: 82 LQPVLSEVLRDFGNVQVCWGDVLEVDLPRMCEEAFGPRT-----VRVVANLPYYVTTPVM 136
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEP-EYKFKVPRTN 292
+LL G + +VL++Q E A RL P +T Y + + V +++E E +VP +
Sbjct: 137 MKLLEEGPVMDRMVLMVQREVADRLTARPGTKT--YGALTVAVQWFAEKVESVARVPASC 194
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-- 350
F+P+P+VD+ VV L+ D P V T+ +V + F +RK L +L H +
Sbjct: 195 FWPRPEVDSVVVRLDLRPRPD-PEV--TRRLSRVVRAGFGQRRKTLLNALSHALAGRDRA 251
Query: 351 -IEKAL 355
IE+AL
Sbjct: 252 SIEQAL 257
>gi|268318145|ref|YP_003291864.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252]
gi|262335679|gb|ACY49476.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252]
Length = 266
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 14/234 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK LGQH++++ I ++ AA D V+EIGPGTG+LT +LL + AIE D
Sbjct: 7 PRKRLGQHFLVDPNIARKIVAALQAAPEDPVVEIGPGTGALTGLLLERYPHLTAIEIDPR 66
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V ++ R+ +D V QED +K + E + G VV N+P+ I++ ++
Sbjct: 67 AVAELKARWPELD---VRQEDVLKVN-------WAELAEEKGGRLHVVGNLPYYITSPIL 116
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + +E VL++Q E A RLV P + Y +++ ++ P F V R F
Sbjct: 117 FALLDAREALAEAVLMMQREVAERLVAPP-GSKTYGILSVAAQLWATPALLFPVSRHVFR 175
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P+P+V++AVV ++ P V + ++ +AFN +RK LR SL+ L S
Sbjct: 176 PKPRVESAVVRLTFERP--LPDV-DPELLRQVIRTAFNQRRKTLRNSLRRLLPS 226
>gi|323140326|ref|ZP_08075258.1| dimethyladenosine transferase [Phascolarctobacterium succinatutens
YIT 12067]
gi|322415184|gb|EFY05971.1| dimethyladenosine transferase [Phascolarctobacterium succinatutens
YIT 12067]
Length = 283
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 132/230 (57%), Gaps = 13/230 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ I ++ AA + D VLE+GPG G+LT L +GA V+A+E D+ ++
Sbjct: 25 KKLGQNFLIDENIVRRIVEAAELSPADKVLEVGPGIGTLTQGLAESGADVVAVELDKRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ D ++++ D ++ +I + ++ F KV AN+P+ I+T +I
Sbjct: 85 PVLDVTLEGYDNVRIVNGDILQVNIMETV--------AAPEF-KVCANLPYYITTPIIFA 135
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A R+ +P R +Y +++ + +Y+EPE F VP T+F P
Sbjct: 136 LLEKRLPMERLVAMVQKEVAERMAAKPGSR--DYGALSVAIQYYTEPEIAFIVPPTSFIP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
P VD+AV+ K +++ V FF +V +AF+ +RKML SL+++
Sbjct: 194 APAVDSAVIVCK-RRSEPPVKVCDEALFFRIVKAAFSLRRKMLSNSLKNM 242
>gi|317054978|ref|YP_004103445.1| dimethyladenosine transferase [Ruminococcus albus 7]
gi|315447247|gb|ADU20811.1| dimethyladenosine transferase [Ruminococcus albus 7]
Length = 286
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ++++N + ++A + G V+EIG G G LTN L V+AIE D ++
Sbjct: 23 KALGQNFLVNPSVCPRIAEMGNAKAGYGVIEIGTGVGVLTNELAKRADKVVAIEIDDRLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E A D +KV+ D +K + L E S A V AN+P+ I++ ++
Sbjct: 83 PVLEETLAEHDNVKVINADVMKVDLH----KLIEDEFSGMEVA-VCANLPYYITSPILMM 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
LL V +++Q+E RL P L T + + + VN++SEP+ F V R +F P
Sbjct: 138 LLEQRLRIRSVTVMVQKEAGTRLCAP-LGTRDMGAVTVAVNYFSEPKILFNVSRGSFMPA 196
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P VD+ VV F +K+ T VT FF MV +AF+ +RK L S+
Sbjct: 197 PNVDSCVVRFDIKENTP-EGVTDEAFFFKMVRAAFSQRRKTLVNSV 241
>gi|421490665|ref|ZP_15938034.1| dimethyladenosine transferase [Streptococcus anginosus SK1138]
gi|400372562|gb|EJP25504.1| dimethyladenosine transferase [Streptococcus anginosus SK1138]
Length = 291
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 131/247 (53%), Gaps = 14/247 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ ED +K +++ + + S+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVRVINEDILKSDLQARI-----KEFSNPNLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQ 177
Query: 278 FYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKR 335
+Y + F VPRT F P P VD+A++ + D PAV FF + + F +R
Sbjct: 178 YYMTAKVAFIVPRTVFVPAPNVDSAILKMTRR---DQPAVEVKDETLFFKVSKAGFTHRR 234
Query: 336 KMLRKSL 342
K L +L
Sbjct: 235 KTLWNNL 241
>gi|342218672|ref|ZP_08711280.1| dimethyladenosine transferase [Megasphaera sp. UPII 135-E]
gi|341589368|gb|EGS32649.1| dimethyladenosine transferase [Megasphaera sp. UPII 135-E]
Length = 283
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 132/228 (57%), Gaps = 13/228 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ ++ Q+A AA +++GD VLEIGPG GSLT L GA V A+E D H++
Sbjct: 25 KKLGQNFLISPDVVHQIARAADLKDGDSVLEIGPGIGSLTQALAETGAFVHAVELDVHLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + A D ++++ D +K I L + ++ + V AN+P+ I+T +I Q
Sbjct: 85 PVLAKTLAHYDNVEIIHGDILKISI----LDIVKKTPFT-----VCANLPYYITTPIIMQ 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL ++ ++Q+E A R+V P + Y +++ V +Y+EP+ F + +F P
Sbjct: 136 LLESRLPIKRMIFMVQKEVAQRMVAVPGNKI--YGALSVAVQYYTEPQLLFDISPHSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P+V ++VV +++ V+ K FF++V +AF +RK L +L+
Sbjct: 194 APEVTSSVVELQIRNKP-IVEVSDEKRFFAVVKAAFAQRRKTLMNALK 240
>gi|291521141|emb|CBK79434.1| dimethyladenosine transferase [Coprococcus catus GD/7]
Length = 287
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 130/230 (56%), Gaps = 9/230 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + D++ A A V + D+VLEIGPG G++T L A V+A+E D+++
Sbjct: 22 QKKFGQNFLIDGHVLDKIIAGAGVTKDDMVLEIGPGIGTMTQYLAEAAGKVVAVEIDRNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D +KV+ D + S L + ++ KVVAN+P+ I+T +I
Sbjct: 82 LPILQETLADYDNVKVIHAD-----VLSLDLEKLVQEENGGRPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + V +++Q+E A R+ + + +Y +++ V +Y+EP VP F P
Sbjct: 137 ALFEQHVPLANVTVMVQKEVAARM-KSGPGSKDYGALSLAVQYYAEPYIVANVPCNCFMP 195
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
+P VD+AV+ +L + + P V K F ++ ++FN +RK L+ L +
Sbjct: 196 RPNVDSAVI--RLTRYEEPPVQVKDEKMLFKIIRASFNQRRKTLQNGLNN 243
>gi|430757309|ref|YP_007211215.1| Dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430021829|gb|AGA22435.1| Dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. BSP1]
Length = 292
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 128/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHHDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENESFFFQLIKASFAQRRK 237
>gi|401685071|ref|ZP_10816941.1| dimethyladenosine transferase [Streptococcus sp. BS35b]
gi|418974338|ref|ZP_13522250.1| dimethyladenosine transferase [Streptococcus oralis SK1074]
gi|383349242|gb|EID27188.1| dimethyladenosine transferase [Streptococcus oralis SK1074]
gi|400183276|gb|EJO17533.1| dimethyladenosine transferase [Streptococcus sp. BS35b]
Length = 290
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + ++ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQYIKNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQ-HLCTSLEIE----KALGDVGL 360
+L + + E++ KAL GL
Sbjct: 238 WNNLTGYFGKTDEVKEKLTKALDQAGL 264
>gi|365903726|ref|ZP_09441549.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus malefermentans KCTC 3548]
Length = 296
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 154/298 (51%), Gaps = 32/298 (10%)
Query: 94 ARSQD--DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG 151
AR+Q + YH IK KSLGQ+++ + + +++ AA + E D V+E+GPG
Sbjct: 12 ARTQAIINRYHLKIK----------KSLGQNFLTDLTVLNKIVEAAGLSEKDDVIEVGPG 61
Query: 152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER 211
GSLT L VLA E D++++ ++ E ++++ +D ++ ++ + S F+
Sbjct: 62 IGSLTEFLAKNANKVLAFEIDENLIQVLEETLDPYKNVEIVYQDILEANLPEIVNSKFDM 121
Query: 212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYR 270
+ K+VAN+P+ I+T ++ +L F + +++Q+E A RLV P T Y
Sbjct: 122 SRP----LKLVANLPYYITTPILMGVLQGSVTFESITVMMQKEVAERLVAVPG--TKAYG 175
Query: 271 PINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSS 329
++I V + S+ + F VPRT F PQP VD+A+VT K + + P K+FF V
Sbjct: 176 ELSIAVQYRSQAKISFLVPRTAFIPQPNVDSAIVTLTKREPLAELP--YDEKAFFRFVKG 233
Query: 330 AFNGKRKMLRKSLQHLC-----TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLF 382
+F +RK +LQ + I++ L DV + A+ TLP +++ +
Sbjct: 234 SFMHRRKSYWNNLQGMFGKQPEVRERIQRVLDDVKIDKGIRAE-----TLPMSDFIML 286
>gi|443469972|ref|ZP_21060110.1| Dimethyladenosine transferase [Pseudomonas pseudoalcaligenes KF707]
gi|442899491|gb|ELS25939.1| Dimethyladenosine transferase [Pseudomonas pseudoalcaligenes KF707]
Length = 268
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I ++ + +EG+ +LEIGPG G+LT LL +GA + IE D +
Sbjct: 10 RKRFGQNFLHDAGIIHRILRSIHAREGERLLEIGPGQGALTEGLLASGAQLDVIELDLDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ RF + ++ Q D +K F R ++ +VV N+P+NIST +I
Sbjct: 70 IPILTHRFGQLPNFRLNQGDALKFD--------FRRLDAAPHSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL D+ ++ +LQ+E RL EP ++ ++I V ++ E+ F V F
Sbjct: 122 HLLAHADLIRDMHFMLQKEVVERLAAEPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA +V AFN +RK LR +L+ L + IE A
Sbjct: 180 PPPKVDSAIVRLVPHEVLPHPA-KDPALLERVVREAFNQRRKTLRNTLKGLLDAAAIEAA 238
Query: 355 LGDVGL 360
D GL
Sbjct: 239 GVDGGL 244
>gi|392963272|ref|ZP_10328698.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans DSM 17108]
gi|421056830|ref|ZP_15519747.1| dimethyladenosine transferase [Pelosinus fermentans B4]
gi|421059750|ref|ZP_15522312.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans B3]
gi|421065070|ref|ZP_15526873.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans A12]
gi|421069349|ref|ZP_15530521.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans A11]
gi|392438010|gb|EIW15872.1| dimethyladenosine transferase [Pelosinus fermentans B4]
gi|392450369|gb|EIW27422.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans A11]
gi|392451096|gb|EIW28090.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans DSM 17108]
gi|392458395|gb|EIW34932.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans B3]
gi|392459757|gb|EIW36136.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans A12]
Length = 280
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 131/240 (54%), Gaps = 14/240 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + + D VLEIGPG G+LT L AGA V A+E D+ ++
Sbjct: 25 KKLGQNFLIDEHVVQSIVKAANITQDDAVLEIGPGIGTLTQGLAEAGAAVTAVEIDRRLI 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + ++V+ D ++ I ++ ++ KVVAN+P+ I+T +I
Sbjct: 85 EVLAKTLEGYENIRVVHGDILRIDI---------GKEVAAPRYKVVANLPYYITTPIIMG 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A R+V P T +Y +++ V +Y++PE F VP +F P
Sbjct: 136 LLEAHMPVDILVTMVQKEVAQRMVAVPG--TKDYGSLSVAVQYYTKPEIMFIVPPASFIP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
P VD+AV+ +++ P + + FF +V +AF +RK L +L+ E K +
Sbjct: 194 PPAVDSAVIRCTVREKP--PVEVNERIFFRVVKAAFAQRRKTLSNTLKTTGVPAETLKVI 251
>gi|418963551|ref|ZP_13515388.1| dimethyladenosine transferase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383343147|gb|EID21342.1| dimethyladenosine transferase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 291
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 133/246 (54%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ ED +K +++ + + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVRVVNEDILKSDLQARIKEF----ANPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSSA-FNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV ++FF VS A F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVGVKDEAFFFKVSKASFTHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|443310298|ref|ZP_21039955.1| dimethyladenosine transferase [Synechocystis sp. PCC 7509]
gi|442779647|gb|ELR89883.1| dimethyladenosine transferase [Synechocystis sp. PCC 7509]
Length = 266
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 18/233 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK QH++ + ++ Q+ AA + + D +LEIGPGTG LT LL +V+A+E D+ +
Sbjct: 5 RKIFAQHWLKSEKVLHQIIKAAEITKSDRILEIGPGTGVLTRQLLPLAQSVVAVEIDRDL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ + +LQ D + + + + KVVANIP+NI+ +++
Sbjct: 65 CALLVKQLGKVSNFLLLQGDILSLALPDY--------DACKDLNKVVANIPYNITGPILE 116
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+LL P F +VLL+Q+E A RL +P R + +++ V + +E E VP
Sbjct: 117 KLLGKISTPPVQSFDSIVLLVQKEVAERLYAKPGNRA--FGALSVRVQYLAECELVCPVP 174
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
F P PKVD+AVV + +Q PA T+ ++ ++V F KRKMLR +L
Sbjct: 175 AQCFSPPPKVDSAVVRLRPRQI--LPAATNPRNLETLVKLGFATKRKMLRNNL 225
>gi|312871246|ref|ZP_07731344.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
gi|312872808|ref|ZP_07732873.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
gi|311091850|gb|EFQ50229.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
gi|311093260|gb|EFQ51606.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
Length = 295
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 143/254 (56%), Gaps = 17/254 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + S VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPIS----VVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I +L+ S++ L++Q+E A R + S ++ Y P+ I V + ++ F+V
Sbjct: 141 ITTPIILKLMHSPVKISQLTLMMQKEVAER-ISASHKSKAYGPLTIAVKKDMDVDFAFEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
RT+F P PKVD+AVV K ++ + + F+ +V AF+ +RK L +L+ L
Sbjct: 200 KRTSFMPSPKVDSAVVVLK---PLEHKLLIEHEDLFNQIVKLAFSQRRKTLNNNLKSLIK 256
Query: 348 SLEI-EKALGDVGL 360
+ + +K L D+ L
Sbjct: 257 NKDSRQKLLNDLNL 270
>gi|15672672|ref|NP_266846.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
Il1403]
gi|281491189|ref|YP_003353169.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
KF147]
gi|385830227|ref|YP_005868040.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
CV56]
gi|418036990|ref|ZP_12675381.1| Methyltransferase [Lactococcus lactis subsp. cremoris CNCM I-1631]
gi|27151600|sp|Q9CHN8.1|RSMA_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|12723599|gb|AAK04788.1|AE006302_6 kasugamycin dimethyltransferase [Lactococcus lactis subsp. lactis
Il1403]
gi|281374930|gb|ADA64448.1| Dimethyladenosine transferase [Lactococcus lactis subsp. lactis
KF147]
gi|326406235|gb|ADZ63306.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
CV56]
gi|354695135|gb|EHE94757.1| Methyltransferase [Lactococcus lactis subsp. cremoris CNCM I-1631]
Length = 294
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 133/251 (52%), Gaps = 9/251 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITQTAELSKEVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ D +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSADILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ FSE V+++Q+E A R + S +T Y ++I V +Y E F VPRT F P
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADR-IAASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIE 352
P VD+A++ ++A V + FF + S+F +RK L +LQ + EIE
Sbjct: 202 APNVDSAILKMVRREAP-LVEVEDEEWFFKTMHSSFVHRRKTLMNNLQAAFGKESKPEIE 260
Query: 353 KALGDVGLPAT 363
K L + T
Sbjct: 261 KLLAQAEISPT 271
>gi|387880371|ref|YP_006310674.1| dimethyladenosine transferase [Streptococcus parasanguinis FW213]
gi|386793820|gb|AFJ26855.1| dimethyladenosine transferase [Streptococcus parasanguinis FW213]
Length = 291
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 136/266 (51%), Gaps = 12/266 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G RKS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGSTFRKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ ++ PAVT FFS+ ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRREK---PAVTVKDEDFFFSVSKASFVHRRK 235
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPA 362
L +L E KA + G+ A
Sbjct: 236 TLWNNLTSRFGKTEDIKAKLEAGIQA 261
>gi|402834660|ref|ZP_10883258.1| dimethyladenosine transferase [Selenomonas sp. CM52]
gi|402277366|gb|EJU26444.1| dimethyladenosine transferase [Selenomonas sp. CM52]
Length = 288
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 129/227 (56%), Gaps = 13/227 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AAA +++GD VLEIGPG G+LT LL AGA V A+E D+ +
Sbjct: 25 KRLGQNFLVDGSVVKDIVAAAEIEDGDRVLEIGPGIGTLTQGLLEAGAHVTAVELDKKLP 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E A+ D L+++ D +K IR+ M + F KV AN+P+ I+T ++
Sbjct: 85 AVLAETLAAYDHLRIVPGDILKTDIRALM--------ENQPF-KVAANLPYYITTPILLA 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + +V ++Q+E A R++ P + Y +++ V +++EP +V +F P
Sbjct: 136 LLEQNLPITHIVTMVQKEVAERMIAAPGSKI--YGALSVAVQYHTEPRIVREVAPRSFIP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P+V +AV+ + ++ VT + FF + ++F +RK L +L
Sbjct: 194 APEVASAVIACQKREKPPV-EVTDERMFFRVARASFGQRRKTLANAL 239
>gi|424824982|ref|ZP_18249969.1| dimethyladenosine transferase [Chlamydophila abortus LLG]
gi|333410081|gb|EGK69068.1| dimethyladenosine transferase [Chlamydophila abortus LLG]
Length = 278
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 145/270 (53%), Gaps = 22/270 (8%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
GR P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EK
Sbjct: 18 GR-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEK 76
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D + E ++ QL + E C L + + G +VVAN+P++I+T
Sbjct: 77 DP----MFEE---TLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITT 125
Query: 232 DVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++ +L L + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 126 PLLTKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVS 183
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P+P+V +AVV +K+ TK FFS+ +AF +RK+L +L+ L
Sbjct: 184 PGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKE 242
Query: 350 EIEKALGDVGLPATAAADYKFPITLPSTEY 379
+ +AL + +D P TL +Y
Sbjct: 243 RVFEALSQLHF-----SDKTRPETLSLDDY 267
>gi|34762816|ref|ZP_00143802.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887518|gb|EAA24602.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 264
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 137/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + E D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNRIIEVSNINENDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ +R ++ KS+ KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYILIMGDILEVDLRKYI------NKST----KVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGEAEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-EIEK 353
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S +I++
Sbjct: 174 PTPNVDSAFISIKFYKDDRYKNKISESLFFKYVKAAFSNKRKNIVNNLVTLGYSKNKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + +P A+
Sbjct: 234 ILNQIEVPENERAE 247
>gi|424925257|ref|ZP_18348618.1| dimethyladenosine transferase [Pseudomonas fluorescens R124]
gi|404306417|gb|EJZ60379.1| dimethyladenosine transferase [Pseudomonas fluorescens R124]
Length = 272
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + + GD +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSISAKSGDRMLEIGPGQGALTAGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNTLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA + +V AFN +RK LR +L+ L T+ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKQLMTAAEIEAA 238
>gi|386038716|ref|YP_005957670.1| dimethyladenosine transferase [Paenibacillus polymyxa M1]
gi|343094754|emb|CCC82963.1| dimethyladenosine transferase [Paenibacillus polymyxa M1]
Length = 332
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 6/228 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + + LEIGPG G+LT L + V A+E DQ +
Sbjct: 63 KKSLGQNFLIDQNILSKIVNAAGLDDTKGALEIGPGIGALTEKLAQSAKAVTAVEIDQRL 122
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +KV D +K +R + F + VVAN+P+ ++T ++
Sbjct: 123 LPILEEVLAPYEHVKVRHGDVLKLDLREVFAADF----ADVSKVSVVANLPYYVTTPILM 178
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ S T +Y ++I V +YSEPE VP T F P
Sbjct: 179 RLLEDKLPLENIVVMIQKEVAERMA-ASPGTKDYGSLSIAVQYYSEPELVCTVPNTVFIP 237
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
QP VD+AV+ ++++ V K FF +V +AF +RK + +L+
Sbjct: 238 QPNVDSAVIRLRVREVPPV-EVVDEKHFFEVVHAAFAQRRKTISNNLK 284
>gi|418087664|ref|ZP_12724831.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47033]
gi|353757065|gb|EHD37662.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47033]
Length = 290
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 14/267 (5%)
Query: 101 YHATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
Y++ KA+ + F +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 YYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 TERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|206891185|ref|YP_002249355.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206743123|gb|ACI22180.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 263
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 129/233 (55%), Gaps = 19/233 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+ LGQH++ N+EI +++ + + D V+EIG G G LT +LL V+AIE D +
Sbjct: 9 KPKLGQHFLRNAEILEKIVKVSEINSNDKVVEIGAGMGDLTEILLKNAKEVIAIEIDPVL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+++ERF + L ++ E+ +K G KVVANIP+ I+ +I
Sbjct: 69 YKILKERFYGKENLVLINENALKFPY------------EEIGQFKVVANIPYYITKPIIF 116
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL + ++ S + L +Q+E A RL +PS T Y ++I +Y++ E KF +P + F
Sbjct: 117 KLLKLKNLIS-MTLTIQKEVAERLAAKPS--TKAYSALSIIAQYYTQAEIKFYIPASFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
P P+V++AV+ K+ + P V K FF ++ SAF +RKM+ SL+ +
Sbjct: 174 PPPEVESAVI--KMDRRDKSPVEVIDEKLFFKIIKSAFGQRRKMISNSLKSII 224
>gi|366163913|ref|ZP_09463668.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acetivibrio cellulolyticus CD2]
Length = 279
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 132/231 (57%), Gaps = 12/231 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + ++ ++ A + D+V+EIGPG GS+T L + V+A+E D++++
Sbjct: 18 KSLGQNFLTDDKVVTRIVDTAEITYDDLVMEIGPGIGSMTGELASRAGKVVAVEIDKYLI 77
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++E L+++ ED +K +++ ++ R KV AN+P+ I+T +I +
Sbjct: 78 PALKENLKEFSNLEIINEDIMKVNVKDITVNGQNMR------VKVAANLPYYITTPIIMK 131
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + +V ++Q+E A R+V +P + +Y +++ V +Y++PE F VP F P
Sbjct: 132 LLEEENDIELMVFMVQKEVAQRMVAKPGGK--DYGALSVAVQYYAQPEKVFDVPPHCFVP 189
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKS-FFSMVSSAFNGKRKMLRKSLQHL 345
QP+VD+ +V KLK+ P K FF +V ++F +RK L +L +
Sbjct: 190 QPEVDSTIV--KLKKNKMPPVDLKDKDMFFKVVKASFGQRRKTLLNALTNF 238
>gi|169335103|ref|ZP_02862296.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM
17244]
gi|169257841|gb|EDS71807.1| dimethyladenosine transferase [Anaerofustis stercorihominis DSM
17244]
Length = 287
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 148/268 (55%), Gaps = 11/268 (4%)
Query: 104 TIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
TI + +K F +K LGQ+++ + I ++ + + + ++VLE+GPG GSLT L
Sbjct: 8 TISEITNKYDFRFKKDLGQNFLTDENIVLKIVDSLELTDDEVVLEVGPGMGSLTQKLAER 67
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSSGFAKV 221
V A+E D V ++ E + + ++++ +D +K +R + ++ E RK K
Sbjct: 68 AYKVYAVEIDTRAVNMLEETLSEYNNIEIINKDILKTDLREILEDAIKENRK-----IKF 122
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSE 281
++N+P+ I++ ++ ++L +F +V++LQ+E A RL + T +Y I V++Y+E
Sbjct: 123 ISNLPYYITSPILMKVLEDKVMFENIVVMLQKEVATRL-NAKVNTKDYSSFTIAVDYYAE 181
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
E F VP+T F P PKVD+ V+ ++ + V + FF +V +AF +RKM+ S
Sbjct: 182 VERLFNVPKTVFVPMPKVDSTVLRVVPRKESKVD-VDNQDMFFKVVKAAFMNRRKMVFNS 240
Query: 342 LQH-LCTSLEIEK-ALGDVGLPATAAAD 367
L + L + ++ K AL + GL A+
Sbjct: 241 LANGLAVNKDLLKNALLNSGLDEKVRAE 268
>gi|325680208|ref|ZP_08159773.1| dimethyladenosine transferase [Ruminococcus albus 8]
gi|324108157|gb|EGC02408.1| dimethyladenosine transferase [Ruminococcus albus 8]
Length = 286
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 133/249 (53%), Gaps = 11/249 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ++++N + ++A ++G V+EIG G G LTN L V+AIE D ++
Sbjct: 23 KALGQNFLVNPSVCPRIAEMGNAKKGFGVIEIGTGVGVLTNELAKRADKVVAIEIDDRLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E A D +KV+ D ++ + + F+ + + V AN+P+ I++ ++
Sbjct: 83 PVLEETLAEHDNVKVINADVMEVDLHKLIEEEFDGLEVA-----VCANLPYYITSPILMM 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
LL V +++Q+E RL P + T + + + VN++S P+ F V R +F P
Sbjct: 138 LLEQRLRIRSVTVMVQKEAGTRLCAP-VGTRDMGAVTVAVNYFSAPKILFNVSRGSFMPA 196
Query: 297 PKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH--LCTSLEIEK 353
P VD+ VV F +K+ D PA VT FF MV +AF+ +RK L S+ + K
Sbjct: 197 PNVDSCVVRFDIKE--DTPAGVTDEAFFFKMVRAAFSQRRKTLVNSVSSGMGLDKAAVTK 254
Query: 354 ALGDVGLPA 362
A+ + GLPA
Sbjct: 255 AVENSGLPA 263
>gi|297205158|ref|ZP_06922554.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16]
gi|297149736|gb|EFH30033.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16]
Length = 293
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 133/251 (52%), Gaps = 18/251 (7%)
Query: 114 FPRKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
F +K+LGQ+++++ ++IND L AA ++ D VLEIGPG GSLT +L GA VLA E D
Sbjct: 23 FAKKNLGQNFLISLNKINDILDAAE-IKSDDQVLEIGPGIGSLTEQMLLRGAKVLAYEID 81
Query: 173 QHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
Q + ++ D K++ +D +K + + F+ K KVVAN+
Sbjct: 82 QDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKP----IKVVANL 137
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
P+ I+T +I L F + L++Q+E A RL S EY P+ IFV +
Sbjct: 138 PYYITTPIIFALAKSDLAFESLTLMMQKEVAERLCASS-GNKEYGPLTIFVQTQMAVKMA 196
Query: 286 FKVPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
V TNF PQPKVD+AVV K L + D V T++F +V F+ +RK L +L+
Sbjct: 197 VMVDHTNFNPQPKVDSAVVVLKPLAKKVD---VGDTENFEHVVKMCFSQRRKTLNNNLKS 253
Query: 345 LCTSLEIEKAL 355
L + E K L
Sbjct: 254 LVKNGEERKNL 264
>gi|418973394|ref|ZP_13521388.1| dimethyladenosine transferase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349283|gb|EID27228.1| dimethyladenosine transferase [Streptococcus pseudopneumoniae ATCC
BAA-960]
Length = 290
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + ++ + K+
Sbjct: 65 AECAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAKYI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ V FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVEVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>gi|262037354|ref|ZP_06010819.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264]
gi|261748611|gb|EEY35985.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264]
Length = 278
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 138/263 (52%), Gaps = 10/263 (3%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
K ++ +K GQ+++ + E++D++ A + + V+EIGPG G LT L+
Sbjct: 5 KKYGNEKNIAKKKYGQNFLTDGELSDRILEEADIDKNTEVVEIGPGLGFLTEKLIEKSKH 64
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
+ A E D ++ ++ ++F D ++ +DF++ ++ ++ E R++ KVVANI
Sbjct: 65 LTAFEIDDDLIPVLNKKFKDKDNFLLVHKDFLEINLGEYL----EDREN----IKVVANI 116
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
P+ I++ +I +L+ D SE+ L++Q+E A R + R+ + V F++E EY
Sbjct: 117 PYYITSPIINRLIEFRDNISEIYLMVQKEVAER-ISSKPRSKNMSILTHAVQFFAETEYL 175
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
F VP+ F P PKVD+A + L + Y + S + +F + AF+ KRK + +L L
Sbjct: 176 FTVPKEKFDPVPKVDSAFLKIVLLKDKRYESQISEEKYFKYLKKAFSNKRKSISNNLSEL 235
Query: 346 CTSLE-IEKALGDVGLPATAAAD 367
E I L VG + A +
Sbjct: 236 GFGKEKISGVLQKVGKTSLARTE 258
>gi|347530404|ref|YP_004837167.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Roseburia hominis A2-183]
gi|345500552|gb|AEN95235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Roseburia hominis A2-183]
Length = 292
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 141/255 (55%), Gaps = 17/255 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ AA + + D VLEIGPG G++T L V A+E DQ++
Sbjct: 22 QKKFGQNFLIDTHVLERIIEAAGITKDDFVLEIGPGIGTMTQYLCENAREVTAVEIDQNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + V+ ED +K I + L E + + KVVAN+P+ I+T +I
Sbjct: 82 IPILADTLSAYDNVTVINEDILKLDI----VKLAEEKNAGKPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V +Y++PE VP F
Sbjct: 137 GLFESHVPIDSITIMVQKEVADRMQVGPG--TKDYGALSLAVQYYAKPEIIANVPPNCFM 194
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQ-----HLCTS 348
P+P V +AV+ +L + P V K F ++ ++FN +RK L L HL
Sbjct: 195 PRPNVGSAVI--RLTRHETVPVQVEDEKLMFRLIRASFNQRRKTLANGLNNSPEIHLSKE 252
Query: 349 LEIEKALGDVGLPAT 363
+ I++++ ++G+P T
Sbjct: 253 V-IQESIEELGVPVT 266
>gi|417787210|ref|ZP_12434893.1| dimethyladenosine transferase [Lactobacillus salivarius NIAS840]
gi|417809172|ref|ZP_12455854.1| dimethyladenosine transferase [Lactobacillus salivarius GJ-24]
gi|334307387|gb|EGL98373.1| dimethyladenosine transferase [Lactobacillus salivarius NIAS840]
gi|335351128|gb|EGM52622.1| dimethyladenosine transferase [Lactobacillus salivarius GJ-24]
Length = 297
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 127/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 27 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K +++ + FE + K+VAN+P+ I+T ++
Sbjct: 87 LPVLADTLSPYENVEVIHQDILKADLKALIAEHFE----TGHKLKLVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G F +V+++Q+E A RL P T Y +++ V + + E F VP+T F
Sbjct: 143 HLLDSGIEFETIVVMMQKEVAERLAANPG--TKAYGSLSVAVQYEMDSEIAFIVPKTVFV 200
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ K+ K F +V +F +RK L +LQ L
Sbjct: 201 PQPNVDSAIIVLNKKKVKPKEP-QDEKHFKKLVKGSFMHRRKSLWNNLQSL 250
>gi|310639501|ref|YP_003944259.1| ribosomal RNA small subunit methyltransferase a [Paenibacillus
polymyxa SC2]
gi|309244451|gb|ADO54018.1| Ribosomal RNA small subunit methyltransferase A [Paenibacillus
polymyxa SC2]
Length = 294
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 6/228 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + + LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILSKIVNAAGLDDTKGALEIGPGIGALTEKLAQSAKAVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +KV D +K +R + F S VVAN+P+ ++T ++
Sbjct: 85 LPILEEVLAPYEHVKVRHGDVLKLDLREVFAADFADVSKVS----VVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ S T +Y ++I V +YSEPE VP T F P
Sbjct: 141 RLLEDKLPLENIVVMIQKEVAERMA-ASPGTKDYGSLSIAVQYYSEPELVCTVPNTVFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
QP VD+AV+ ++++ V K FF +V +AF +RK + +L+
Sbjct: 200 QPNVDSAVIRLRVREVPPV-EVVDEKHFFEVVHAAFAQRRKTISNNLK 246
>gi|209526260|ref|ZP_03274790.1| dimethyladenosine transferase [Arthrospira maxima CS-328]
gi|376007927|ref|ZP_09785109.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Arthrospira sp. PCC 8005]
gi|423062825|ref|ZP_17051615.1| dimethyladenosine transferase [Arthrospira platensis C1]
gi|209493357|gb|EDZ93682.1| dimethyladenosine transferase [Arthrospira maxima CS-328]
gi|375323720|emb|CCE20862.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Arthrospira sp. PCC 8005]
gi|406715781|gb|EKD10934.1| dimethyladenosine transferase [Arthrospira platensis C1]
Length = 274
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 134/235 (57%), Gaps = 14/235 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + AA + GD +LEIGPGTG LT LL ++V+A+E D+
Sbjct: 6 PRKRFAQHWLRSPATLNHILEAADLSLGDRILEIGPGTGILTERLLPKVSSVVAVEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++F ID +LQ D + + + LS F + ++ + KVVANIP+NI+ +I
Sbjct: 66 LCVQLAKKFGKIDNFLLLQGDILNFDLNGY-LSGFPKFQNPN---KVVANIPYNITGPII 121
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
+ LL P F +VLL+Q+E RL +PS + + +++ V + +E ++ V
Sbjct: 122 EGLLGTIAKPAVKPFDAIVLLVQKEVGARLCAKPS--SKAFGALSVRVQYLAECDWICHV 179
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P T F+P PKVD+AVV + + PA + + ++V F+ +RKMLR +L+
Sbjct: 180 PATAFYPPPKVDSAVVRLRPRPIAS-PA-QNPQLLETLVKLGFSTRRKMLRNNLK 232
>gi|254429167|ref|ZP_05042874.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
gi|196195336|gb|EDX90295.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
Length = 270
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 135/256 (52%), Gaps = 15/256 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + + D++ +Q GD ++EIGPG G+LT LL + +E D+ +
Sbjct: 7 RKRFGQHFLHDRNLVDRMIRTLGLQAGDTLVEIGPGRGALTYPLLEEIPHLHVVELDRDL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L+R+ + D+L + + D ++ R+ K + +V+ N+P+NIST +I
Sbjct: 67 IALLRQE-NTPDRLSIHESDALRFDFRA--------LKPADKPLRVIGNLPYNISTPLIF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL D S++ +LQ+E RL S T ++ ++I V ++ + +Y F VP F P
Sbjct: 118 HLLAQADAISDMTFMLQKEVVERLTA-SPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSP 176
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
P+VD+AVV + +PA +V+ AF +RK +R L+ ++ + E AL
Sbjct: 177 PPRVDSAVVRLIPHASPPHPA-DDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFE-AL 234
Query: 356 G-DVGLPAT--AAADY 368
G D GL + ADY
Sbjct: 235 GIDAGLRPDQLSVADY 250
>gi|428776521|ref|YP_007168308.1| dimethyladenosine transferase [Halothece sp. PCC 7418]
gi|428690800|gb|AFZ44094.1| dimethyladenosine transferase [Halothece sp. PCC 7418]
Length = 276
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 141/260 (54%), Gaps = 22/260 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K QH++ + + ++ AA + D+VLEIGPGTG LT LL V AIE DQ
Sbjct: 3 PQKRFAQHWLKSEKALQEIITAAQLSPEDVVLEIGPGTGILTKELLKTVKKVSAIELDQA 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++E+F D L ++Q DF+K + S + R K + KVVANIP+NI+ ++
Sbjct: 63 LMKHLQEKFRQKDNLILIQGDFLKLELESIL-----REKPN----KVVANIPYNITGPIL 113
Query: 235 KQLLPMGDI------FSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL G I + ++LL+Q+E A R+ S + + +++ + +E E V
Sbjct: 114 EKLL--GSIAEPNRKYDRIILLVQKEIAERICAES-GSKTFGALSVRTQYLAECELISLV 170
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYP-AVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
P F P PKVD+A+++ + +P + TS K +V F +RKMLR +L+ + +
Sbjct: 171 PAKAFSPPPKVDSAIISLTPRV---FPQSATSPKLLEKLVKLGFANRRKMLRNNLKSVIS 227
Query: 348 SLEIEKALGDVGLPATAAAD 367
E+E L + + + A+
Sbjct: 228 PEELETILKKLEISSMVRAE 247
>gi|256851971|ref|ZP_05557358.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN]
gi|260661459|ref|ZP_05862372.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN]
gi|256615383|gb|EEU20573.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN]
gi|260547914|gb|EEX23891.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN]
Length = 297
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 133/251 (52%), Gaps = 18/251 (7%)
Query: 114 FPRKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
F +K+LGQ+++++ ++IND L AA ++ D VLEIGPG GSLT +L GA VLA E D
Sbjct: 27 FAKKNLGQNFLISLNKINDILDAAE-IKSDDQVLEIGPGIGSLTEQMLLRGAKVLAYEID 85
Query: 173 QHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
Q + ++ D K++ +D +K + + F+ K KVVAN+
Sbjct: 86 QDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKP----IKVVANL 141
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
P+ I+T +I L F + L++Q+E A RL S EY P+ IFV +
Sbjct: 142 PYYITTPIIFALAKSDLAFESLTLMMQKEVAERLCASS-GNKEYGPLTIFVQTQMAVKMA 200
Query: 286 FKVPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
V TNF PQPKVD+AVV K L + D V T++F +V F+ +RK L +L+
Sbjct: 201 VMVDHTNFNPQPKVDSAVVVLKPLAKKVD---VGDTENFEHVVKMCFSQRRKTLNNNLKS 257
Query: 345 LCTSLEIEKAL 355
L + E K L
Sbjct: 258 LVKNGEERKNL 268
>gi|170077519|ref|YP_001734157.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
[Synechococcus sp. PCC 7002]
gi|226732632|sp|B1XIV9.1|RSMA_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|169885188|gb|ACA98901.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
[Synechococcus sp. PCC 7002]
Length = 273
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 140/262 (53%), Gaps = 20/262 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + +I D++ AAA +Q D VLEIGPG G+LT+ LL +L++E D+
Sbjct: 3 PRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQVEALLSVEIDRD 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + + +L+ D+++ I + L F + ++ KVVANIP+NI+ ++
Sbjct: 63 LCKYMVKNYGDRPNFLLLEADYLQTDI-NEFLGDFPQFQNPR---KVVANIPYNITGPIL 118
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + F +VLL+Q+E RLV P T + + + V + ++ E V
Sbjct: 119 EKLLGTIDRPNSNPFESIVLLIQKEVGDRLVAHPC--TKAFGALTLRVQYLADCETVCVV 176
Query: 289 PRTNFFPQPKVDAAVVTFK---LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
P F+P+PKV++ VV + L Q P + +T ++ F KRKMLR +L+ L
Sbjct: 177 PPKAFYPKPKVESVVVRLRPRPLAQPAQNPKLLAT-----LIKVGFASKRKMLRNNLKSL 231
Query: 346 CTSLEIEKALGDVGLPATAAAD 367
++ D+ + A +
Sbjct: 232 YNPEILDPIFADLDISPQARGE 253
>gi|433653831|ref|YP_007297539.1| dimethyladenosine transferase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292020|gb|AGB17842.1| dimethyladenosine transferase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 272
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 132/238 (55%), Gaps = 14/238 (5%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
KG +K LGQ+++ + I ++A A + + D V+EIG G G+LT ++ V+A E
Sbjct: 4 KGFNTKKKLGQNFIFDEGILSKIADLADITKADNVIEIGAGLGTLTREIVERAKNVVAYE 63
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D VG++R++ L +L +D +K ++ + F+ K KVVAN+P+ I+
Sbjct: 64 IDDEAVGILRDKLREYKNLIILNDDIMKADLKGVVDKYFDGDK-----CKVVANLPYYIT 118
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+ +I +LL + ++ +L+Q+E A R+ EP + EY + + VN+YS+PE ++P
Sbjct: 119 SPIIMKLLE-SHLMKDITILIQKEVAERICAEPG--SKEYGVLTVAVNYYSKPEMLLELP 175
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
F P+PKV + ++ D P V + K FF +V ++F +RK++ SL+ L
Sbjct: 176 PEVFSPKPKVSSTLIKL---HVLDEPPVFVKNEKLFFKVVKASFGQRRKVITNSLKSL 230
>gi|374672734|dbj|BAL50625.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
IO-1]
Length = 294
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 133/251 (52%), Gaps = 9/251 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITQTAELSKEVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ D +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSADILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ FSE V+++Q+E A R + S +T Y ++I V +Y E F VPRT F P
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADR-IAASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIE 352
P VD+A++ +++ V + FF + S+F +RK L +LQ + EIE
Sbjct: 202 APNVDSAILKM-VRREEPLVEVEDEEWFFKTMHSSFVHRRKTLMNNLQAAFGKESKPEIE 260
Query: 353 KALGDVGLPAT 363
K L + T
Sbjct: 261 KLLAQAEISPT 271
>gi|317495931|ref|ZP_07954294.1| dimethyladenosine transferase [Gemella morbillorum M424]
gi|316914108|gb|EFV35591.1| dimethyladenosine transferase [Gemella morbillorum M424]
Length = 286
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 20/261 (7%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ++++++ I +++ A + E V+EIGPG GSLT +
Sbjct: 8 TFEILKKHGFTFKKSLGQNFLIDANILNRIIDGAGINETVGVIEIGPGIGSLTEAIAKKA 67
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V++ E D ++ ++ E A + ++++ D +K + ++ + S VVA
Sbjct: 68 KKVISFEIDGRLLPILSETLADYNNVEIINNDILKVDVD----NIIAEKMSDCDKIMVVA 123
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T ++ L+ + V+++Q E A RL + T +Y + I +N+Y++ E
Sbjct: 124 NLPYYITTPILTHLIENTEKIDGYVVMMQREVANRL-NAKVGTKDYNSLTILLNYYTDVE 182
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML----- 338
Y F VP+ F P P V++AVV K+ ++ + FF V S F +RK L
Sbjct: 183 YLFTVPKKVFVPAPNVESAVVKIMTKEKKEFEV---DQKFFKFVRSCFVQRRKTLLNNLI 239
Query: 339 -------RKSLQHLCTSLEIE 352
++ LQ C EIE
Sbjct: 240 SSYGKDKKQDLQASCFDSEIE 260
>gi|381184430|ref|ZP_09893043.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Listeriaceae bacterium TTU M1-001]
gi|380315680|gb|EIA19186.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Listeriaceae bacterium TTU M1-001]
Length = 295
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++ I ++ A V E V+EIGPG G+LT L +
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDPNILRRIVTTAGVTEETNVIEIGPGIGALTEHLARSA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
VLA E D ++ ++ E + + ++++ D +K +R M E+ S K+VA
Sbjct: 71 NEVLAFEIDDRLLPILAETLSPYENVEIVHTDILKADVREVM---GEKFSSPEAPLKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I QLL S + +LQ+E A R+ +P T Y ++I + FY
Sbjct: 128 NLPYYVTTPIILQLLHEKVPASSMTFMLQKEVAERISAKPG--TKSYGSLSIAIQFYMVA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ +++ T V FF + +AF +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHL-VRRETPAAVVHDETFFFEVTRAAFAQRRKTLWNNL 244
>gi|255311159|ref|ZP_05353729.1| dimethyladenosine transferase [Chlamydia trachomatis 6276]
gi|255317460|ref|ZP_05358706.1| dimethyladenosine transferase [Chlamydia trachomatis 6276s]
gi|440527947|emb|CCP53431.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis D/SotonD5]
gi|440532412|emb|CCP57922.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis G/SotonG1]
gi|440533305|emb|CCP58815.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis Ia/SotonIa1]
gi|440534199|emb|CCP59709.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis Ia/SotonIa3]
Length = 277
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 151/269 (56%), Gaps = 19/269 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD G S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFEG-------SLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
+RK+L SL++L ++ + L +G
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGF 253
>gi|301299614|ref|ZP_07205875.1| dimethyladenosine transferase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852801|gb|EFK80424.1| dimethyladenosine transferase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 297
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 6/230 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 27 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K + + + FE K+VAN+P+ I+T ++
Sbjct: 87 LPVLADTLSPYENVEVIHQDILKADLEALIAEHFE----PGHKLKLVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F +V+++Q+E A RL S T Y +++ V + + E F VP+T F P
Sbjct: 143 HLLDSGIEFETIVVMMQKEVAERLAANS-GTKAYGSLSVAVQYEMDSEIAFIVPKTVFVP 201
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
QP VD+A++ K+ K F +V +F +RK L +LQ L
Sbjct: 202 QPNVDSAIIVLNKKKVKPKEP-QDEKHFKKLVKGSFMHRRKSLWNNLQSL 250
>gi|386587086|ref|YP_006083488.1| dimethyladenosine transferase [Streptococcus suis D12]
gi|353739232|gb|AER20240.1| dimethyladenosine transferase [Streptococcus suis D12]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 144/270 (53%), Gaps = 13/270 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D ++ ++ + D + V+ +D +K +++H+ + K+ +
Sbjct: 65 AESAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTHIQNF----KNPALPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIKSKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ +V FF + ++F +RK L
Sbjct: 179 YMAAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPLVSVKDEDFFFRVSKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIE----KALGDVGLPAT 363
+L H S E++ +ALG L A+
Sbjct: 238 WNNLTNHFGKSEEVKDKLTQALGMAELEAS 267
>gi|419707667|ref|ZP_14235149.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
salivarius PS4]
gi|383282667|gb|EIC80649.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
salivarius PS4]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D +KV+ ED +K +++ + K+ +
Sbjct: 65 AENAAEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQP-LVEVKDEDFFFRVSKISFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEI----EKALGDVGL 360
+L H S E+ E+ALG+ +
Sbjct: 238 WNNLTSHFGKSEEVKTKLEQALGNANI 264
>gi|357014629|ref|ZP_09079628.1| RsmA [Paenibacillus elgii B69]
Length = 306
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 143/276 (51%), Gaps = 19/276 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ +AA + LEIGPG G+LT L V+A+E DQ +
Sbjct: 35 KKSLGQNFLIDQNILTKIVSAAELDSDKGALEIGPGIGALTQQLAKTAGRVVAVEIDQRL 94
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E + V+ D +K IR LFE VVAN+P+ ++T ++
Sbjct: 95 LPMLKETLEPYPHVSVVHGDVLKTDIR----ELFEAHFRDVSKVSVVANLPYYVTTPIVM 150
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q+E A R+ +P + +Y ++I V +Y EPE VP T F
Sbjct: 151 KLLEEKLPLEHIVVMIQKEVADRMAAKPGGK--DYGSLSIAVQYYCEPEVVTIVPHTVFI 208
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS-FFSMVSSAFNGKRKMLRKSLQHLC----TSL 349
PQP VD+AV+ K+++ P +S FF +V ++F +RK + +L T
Sbjct: 209 PQPNVDSAVIKLKVRERP--PVEVEDESFFFDVVQASFVQRRKTIYNNLAARYFTKETKG 266
Query: 350 EIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEH 385
++E L + G+ + + TL EY++ H
Sbjct: 267 QLEGILRNAGIEPSRRGE-----TLSIEEYSVLSRH 297
>gi|313893343|ref|ZP_07826917.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str.
F0412]
gi|313442112|gb|EFR60530.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str.
F0412]
Length = 284
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 17/230 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS D ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYDNVRIVHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E ALR+V +P T +Y +++ V +Y+EP+ VP +F P
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYTEPDIVLDVPPKSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P V ++V+ L+ D P V K FF +V + F +RK +++
Sbjct: 194 APAVTSSVIRCVLR---DKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMK 240
>gi|260589447|ref|ZP_05855360.1| dimethyladenosine transferase [Blautia hansenii DSM 20583]
gi|331084461|ref|ZP_08333563.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 6_1_63FAA]
gi|260540192|gb|EEX20761.1| dimethyladenosine transferase [Blautia hansenii DSM 20583]
gi|330401324|gb|EGG80911.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 289
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 139/264 (52%), Gaps = 15/264 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + D++ +AA + + D VLEIGPG G++T L A
Sbjct: 12 TIEVLQKYDFVFQKKFGQNFLIDTHVLDKIISAAEITKEDFVLEIGPGIGTMTQYLACAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + + VL ED +K I+ ++ KVVA
Sbjct: 72 REVVAVEIDKALIPILEDTLQDYSNVTVLNEDILKVDIKK-----LADEHNNGKPIKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSE 281
N+P+ I+T +I L GD+ + +++Q+E A R+ V P T EY +++ V +Y+E
Sbjct: 127 NLPYYITTPIIMGLFE-GDVPIESITVMVQKEVADRMQVGPG--TKEYGALSLAVQYYAE 183
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
P VP F P+PKV +AV+ K A V TK F ++ ++FN +RK L
Sbjct: 184 PYIVANVPPNCFMPRPKVGSAVIRLT-KHAEPPVEVFDTKLMFRIIRASFNQRRKTLANG 242
Query: 342 LQHLCT----SLEIEKALGDVGLP 361
L + EI++A+ G P
Sbjct: 243 LNNSPELSFGKEEIQRAIKACGFP 266
>gi|384173702|ref|YP_005555087.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349592926|gb|AEP89113.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 292
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 129/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V + V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTKKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENESFFFQLIKASFAQRRK 237
>gi|238019586|ref|ZP_04600012.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748]
gi|237863784|gb|EEP65074.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748]
Length = 284
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 17/230 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS D ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYDNVRIVHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E ALR+V +P T +Y +++ V +Y+EP+ VP +F P
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYTEPDIVLDVPPKSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P V ++V+ L+ D P V K FF +V + F +RK +++
Sbjct: 194 APAVTSSVIRCVLR---DKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMK 240
>gi|153854785|ref|ZP_01996019.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814]
gi|149752692|gb|EDM62623.1| dimethyladenosine transferase [Dorea longicatena DSM 13814]
Length = 292
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 139/260 (53%), Gaps = 11/260 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + D++ +A + E D+VLEIGPG G++T L A
Sbjct: 12 TIEVLQKYNFSFQKKFGQNFLIDTHVLDKIIQSANITEDDMVLEIGPGIGTMTQYLAQAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D++++ ++ + + D ++V+ ED +K ++ +++ KVVA
Sbjct: 72 GKVIAVEIDKNLIPILEDTLSGYDNVRVINEDVLKLDLKK-----LADEENNGKPVKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I L + +++Q+E A R+ + +Y +++ V +Y++P
Sbjct: 127 NLPYYITTPIIMGLFENEVPVESITVMVQKEVADRM-QTGPGNKDYGALSLAVQYYADPY 185
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
VP F P+PKV +AV+ Q V K F+++ ++FN +RK L L+
Sbjct: 186 IVANVPPNCFMPRPKVGSAVIRLTCHQEKPV-QVQDEKLMFNIIRASFNQRRKTLANGLK 244
Query: 344 HLC----TSLEIEKALGDVG 359
+ T E+E A+ +G
Sbjct: 245 NAATLDFTKEEVEAAIDALG 264
>gi|310825990|ref|YP_003958347.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308737724|gb|ADO35384.1| hypothetical protein ELI_0367 [Eubacterium limosum KIST612]
Length = 285
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 9/228 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQ+++++ I ++ A V + D VLEIGPG G++T VL A V ++E D+ ++
Sbjct: 23 KRYGQNFLIDENIVRKIVEAGNVHKNDTVLEIGPGIGTMTQVLAEAAGKVYSVEIDKKLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + ++++Q D +K I + + ++ K+VAN+P+ ++T +I
Sbjct: 83 PVLAKTLEDCNNVEIIQGDILKTDIPGLLRTNLQKNP-----LKIVANLPYYVTTPIIMG 137
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L ++ ++Q+E RL EP T Y + I FY+E E F VP F P
Sbjct: 138 FLESELPIEQMTFMIQKEVGERLCAEPG--TKAYGSLTIAAQFYAETEISFYVPAAVFMP 195
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
+PKVD+ VVT K K+A V+ K FF +V ++F +RK L LQ
Sbjct: 196 RPKVDSIVVTLK-KRAEPAIRVSDKKLFFQIVKASFLNRRKTLINGLQ 242
>gi|304315637|ref|YP_003850782.1| dimethyladenosine transferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777139|gb|ADL67698.1| dimethyladenosine transferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 272
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 138/248 (55%), Gaps = 18/248 (7%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
KG +K LGQ+++ + I ++A A + + D V+EIG G G+LT ++ V+A E
Sbjct: 4 KGFNTKKKLGQNFIFDEGILSKIADLADITKDDNVIEIGAGLGTLTREIVERAKNVVAYE 63
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D VG++R++ L +L +D +K ++ + F+ K KVVAN+P+ I+
Sbjct: 64 IDDEAVGILRDKLREYKNLIILNDDIMKADLKGVVDKYFDGDK-----CKVVANLPYYIT 118
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+ +I +LL + ++ +L+Q+E A R+ EP + EY + + VN+YS+PE ++P
Sbjct: 119 SPIIMKLLE-SHLMKDITILIQKEVAERICAEPG--SKEYGVLTVAVNYYSKPEMLLELP 175
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
F P+PKV + ++ D P V + K FF +V ++F +RK++ SL+
Sbjct: 176 PEVFSPKPKVSSTLIKL---HVLDEPPVFVKNEKLFFKVVKASFGQRRKVITNSLK---- 228
Query: 348 SLEIEKAL 355
SL I+++L
Sbjct: 229 SLNIDQSL 236
>gi|335040902|ref|ZP_08534022.1| Ribosomal RNA small subunit methyltransferase A [Caldalkalibacillus
thermarum TA2.A1]
gi|334179206|gb|EGL81851.1| Ribosomal RNA small subunit methyltransferase A [Caldalkalibacillus
thermarum TA2.A1]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 131/243 (53%), Gaps = 6/243 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++S I AAA+ + V+E+GPG G+LT L V+A E DQ +
Sbjct: 22 KKSLGQNFLVDSNILRAQVEAAALDKTTGVIEVGPGIGALTEQLAIRAGRVVAFEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + ++ +D +K + ++ + R KVVAN+P+ ++T ++
Sbjct: 82 IPILEESLRPYDNVHIIHQDVLKADL-EQVVKTYLRGLDK---LKVVANLPYYVTTPILL 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+ G F +V+++Q+E A RL + + +Y + +FV +Y+EPE VP+T F P
Sbjct: 138 HFIESGLRFEHIVVMVQKEVADRLTATA-GSKDYGSLTVFVQYYTEPELIKVVPKTVFVP 196
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
+P+VD+A+V L++ V FF V + F +RK L +L H E ++ L
Sbjct: 197 RPQVDSALVKLSLRKEPPV-QVVDEDLFFKTVRACFAQRRKTLLNNLLHQLVGKERKREL 255
Query: 356 GDV 358
V
Sbjct: 256 VQV 258
>gi|429205545|ref|ZP_19196817.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
saerimneri 30a]
gi|428146156|gb|EKW98400.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
saerimneri 30a]
Length = 297
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 129/231 (55%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I ++ +A + D V+EIGPG G+LT L VLA+E DQ +
Sbjct: 25 KKSLGQNFLTDINILRKIVTSAEITTADDVIEIGPGIGALTEQLAQNAHQVLALEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ +D ++ + + + F + KVVAN+P+ I+T +I
Sbjct: 85 IPVLGETLAPYDNVTVVNQDVLQADLSQLVATHFTGDRP----LKVVANLPYYITTKIIM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G ++V+++Q+E A RL + +T +Y +++ V + + + F VP+T F P
Sbjct: 141 NLLDSGVALDKIVIMVQKEVADRLA-ATPQTKDYGSLSVAVQYAMDVQTAFIVPKTVFVP 199
Query: 296 QPKVDAAVVTFKLK-QATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
QPKVD+A+ K +A P S F ++V +F +RK L +LQ L
Sbjct: 200 QPKVDSAIAVLTRKTEARVQPQDES--HFRTLVKGSFMHRRKSLWNNLQGL 248
>gi|326789765|ref|YP_004307586.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
gi|326540529|gb|ADZ82388.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
Length = 288
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 137/259 (52%), Gaps = 24/259 (9%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
+A+ SK F +K GQ+++++ ++ D++ AA + + D V+EIGPG G +T LL
Sbjct: 11 RAIISKYPFAFQKKFGQNFLIDPQVLDKIIDAAEITKEDCVIEIGPGIGCVTQALLEKAG 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V++IE D ++ ++ E+F + K++ D +K L+ +S + KVVAN
Sbjct: 71 KVISIEIDNQLIPILEEQFGAEPHFKLIHNDVLKVD-----LAALIAEESPNRRIKVVAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPE 283
+P+ I+T +I LL + +++Q+E A RL +P T +Y I + VN++S PE
Sbjct: 126 LPYYITTPIIMALLEDELPIESITVMVQKEVADRLSSKPG--TKQYGAIAVSVNYFSTPE 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKS 341
VPR F P P VD+AV+ + + P V + K F ++ +AF +RK L +
Sbjct: 184 LVVDVPRNCFMPSPNVDSAVIKLNVHEE---PLVKTNNVKQMFRIIKAAFLLRRKTLLNT 240
Query: 342 LQHLCTSLEIEKALGDVGL 360
L A GD+G+
Sbjct: 241 LA----------AHGDLGI 249
>gi|315222376|ref|ZP_07864281.1| dimethyladenosine transferase [Streptococcus anginosus F0211]
gi|315188537|gb|EFU22247.1| dimethyladenosine transferase [Streptococcus anginosus F0211]
Length = 291
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 133/246 (54%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ ED +K +++ + + +
Sbjct: 65 AENTAEVMAFEIDDRLVPILADTLRDFDNVRVVNEDILKSDLQARIKEF----ANPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSSA-FNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV ++FF VS A F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVGVKDEAFFFKVSKASFTHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|392375231|ref|YP_003207064.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Candidatus
Methylomirabilis oxyfera]
gi|258592924|emb|CBE69233.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Candidatus
Methylomirabilis oxyfera]
Length = 312
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 141/269 (52%), Gaps = 23/269 (8%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
H T L P++ LGQ ++++ + D + AA V D+V+EIGPGTG LT L
Sbjct: 15 HETRALLRQYHLLPKRGLGQSFLVSPTVRDLILRAADVGPQDLVVEIGPGTGVLTEGLAE 74
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKV-----LQEDFVKCHIRSHMLSLFERRKSSS 216
++AIE+D + L+ ER + + L+ DFV ++ M + R
Sbjct: 75 QAGRLIAIERDPGLHRLLAERLGDRPTVSLICGDALEFDFV--NVCGTMCPAYTR----- 127
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AK+V+N+P++++T +I QL+P+ FS +++++Q E A RL+ S Y + +
Sbjct: 128 --AKLVSNLPYSVATPLILQLIPLQRYFSFLLVMVQREVAQRLLA-SPGEEGYSALTLRC 184
Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGK 334
+ ++ +VPRT F+P+P VD+ +V L P VT S F +V +AF +
Sbjct: 185 RYEADVSAVAQVPRTAFYPKPAVDSTLVRLDLLPG---PKVTVHSPGLLFRIVRAAFGQR 241
Query: 335 RKMLRKSLQH---LCTSLEIEKALGDVGL 360
RKMLR +L + + ++++ L D G+
Sbjct: 242 RKMLRNALLNAGIMTEPADLDRILADAGI 270
>gi|300864419|ref|ZP_07109290.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506]
gi|300337563|emb|CBN54438.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506]
Length = 281
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 137/245 (55%), Gaps = 18/245 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + +Q+ AA + + D VLEIGPGTG LT LL A +V+A+E D+
Sbjct: 6 PRKRFAQHWLKSEKALNQIVKAADLSQ-DRVLEIGPGTGILTRSLLPAAQSVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++ +D ++Q D + + L+ F + ++ + KVVANIP+NI+ +I
Sbjct: 65 LCEKLAKQLGKVDNFLLVQGDILAMDLEEQ-LAAFPKFQNPN---KVVANIPYNITGPII 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P F +VLL+Q+E A RL +P R + +++ V + +E E V
Sbjct: 121 EKLLGKISAPAAKPFDLIVLLVQKEVAERLYAKPGSRA--FGALSVRVQYLAECELICDV 178
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P F+P PKVD+AVV +L+ P + S++ F KRKMLR +L+ +
Sbjct: 179 PAKAFYPPPKVDSAVV--RLRPRMVEPQAINPVHLESLIKLGFGSKRKMLRNNLK---GT 233
Query: 349 LEIEK 353
+E+E+
Sbjct: 234 IELER 238
>gi|116511486|ref|YP_808702.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
SK11]
gi|385838871|ref|YP_005876501.1| Dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
A76]
gi|414073906|ref|YP_006999123.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
UC509.9]
gi|116107140|gb|ABJ72280.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
SK11]
gi|358750099|gb|AEU41078.1| Dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
A76]
gi|413973826|gb|AFW91290.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 294
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 9/251 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITETADLSKEVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ ED +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSEDILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ FSE V+++Q+E A R+ +T Y ++I V +Y E F VPRT F P
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADRIAARP-KTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIE 352
P VD+A++ +++ V + FF + S+F +RK L ++Q + EIE
Sbjct: 202 APNVDSAILKM-VRREEPLVEVEDEEWFFKTMHSSFVHRRKTLMNNMQAAFGKESKPEIE 260
Query: 353 KALGDVGLPAT 363
K L + T
Sbjct: 261 KLLAQAEISPT 271
>gi|322386716|ref|ZP_08060340.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
gi|417921435|ref|ZP_12564926.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
gi|321268998|gb|EFX51934.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
gi|342834118|gb|EGU68393.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
Length = 290
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVAVKDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|16077110|ref|NP_387923.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221307851|ref|ZP_03589698.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221312173|ref|ZP_03593978.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221317106|ref|ZP_03598400.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221321369|ref|ZP_03602663.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|402774285|ref|YP_006628229.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
QB928]
gi|418030613|ref|ZP_12669098.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428277456|ref|YP_005559191.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto
BEST195]
gi|452912626|ref|ZP_21961254.1| dimethyladenosine transferase [Bacillus subtilis MB73/2]
gi|585375|sp|P37468.1|RSMA_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|467431|dbj|BAA05277.1| high level kasgamycin resistance [Bacillus subtilis]
gi|2632309|emb|CAB11818.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
subsp. subtilis str. 168]
gi|291482413|dbj|BAI83488.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto
BEST195]
gi|351471672|gb|EHA31785.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402479471|gb|AFQ55980.1| Dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
QB928]
gi|407955733|dbj|BAM48973.1| dimethyladenosine transferase [Bacillus subtilis BEST7613]
gi|407963004|dbj|BAM56243.1| dimethyladenosine transferase [Bacillus subtilis BEST7003]
gi|452117654|gb|EME08048.1| dimethyladenosine transferase [Bacillus subtilis MB73/2]
Length = 292
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 129/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + + + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYENVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENESFFFQLIKASFAQRRK 237
>gi|229917418|ref|YP_002886064.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
gi|229468847|gb|ACQ70619.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
Length = 292
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 141/253 (55%), Gaps = 17/253 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + E VLEIGPG GSLT V+A+E DQ +
Sbjct: 22 KKSLGQNFLIDLNILSKIVGAAELSEVSGVLEIGPGIGSLTEQSAKRAKKVVALEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ + + +KV+ D ++ +R + E+ + G VVAN+P+ ++T +
Sbjct: 82 LPILDDTMSPYPHVKVIHGDALELDLR----EIVEQEFLNEGIEDISVVANLPYYVTTPI 137
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
I +LL G F +V+++Q+E A R+ +P T Y ++I + +Y+E E F VP+
Sbjct: 138 IMRLLESGVKFRSLVMMIQKEVAERIGAKPG--TKAYGSLSIAIQYYAEAEVSFIVPKNV 195
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQHLCT--- 347
F P P VD+AV+T ++++ PAV FF + ++F +RK + +L +
Sbjct: 196 FIPAPNVDSAVITLRMRKE---PAVQVKDEAFFFDVARASFAQRRKTILNNLTNYIGKEH 252
Query: 348 SLEIEKALGDVGL 360
+E+E++L + G+
Sbjct: 253 KVELERSLHEAGI 265
>gi|435852875|ref|YP_007314194.1| dimethyladenosine transferase [Halobacteroides halobius DSM 5150]
gi|433669286|gb|AGB40101.1| dimethyladenosine transferase [Halobacteroides halobius DSM 5150]
Length = 285
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 134/245 (54%), Gaps = 12/245 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + A + + D V+EIGPG GSLT L V+A+E D +
Sbjct: 21 KKSLGQNFLVDGNILRNIVGVADITKDDTVVEIGPGIGSLTQQLAKEAGEVIAVELDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D +K+ D ++ F++ + KVVAN+P+ I+T ++
Sbjct: 81 IPVLEDTLAEYDNVKIKHGDALEVD--------FDQLAGKN--YKVVANLPYYITTPIVM 130
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL ++V+++Q+E A R+V +Y ++I V +++ F VP + F P
Sbjct: 131 RLLEEDFSVDKIVVMVQKEVAERMVASPEDGKDYGVLSIGVQYHTAANIAFNVPSSVFIP 190
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
QP+VD+AVV+ +++ + V K FF +V ++F +RK +R +L ++++ + L
Sbjct: 191 QPRVDSAVVSLTVREES-RAEVLDEKFFFKVVRASFQQRRKTIRNALSK-AANIDLSRDL 248
Query: 356 GDVGL 360
D L
Sbjct: 249 VDEAL 253
>gi|294793453|ref|ZP_06758590.1| dimethyladenosine transferase [Veillonella sp. 3_1_44]
gi|416998879|ref|ZP_11939548.1| dimethyladenosine transferase [Veillonella parvula ACS-068-V-Sch12]
gi|294455023|gb|EFG23395.1| dimethyladenosine transferase [Veillonella sp. 3_1_44]
gi|333977032|gb|EGL77891.1| dimethyladenosine transferase [Veillonella parvula ACS-068-V-Sch12]
Length = 284
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 17/230 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS D ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYDNVRIIHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E ALR++ +P T +Y +++ V +Y+EP+ VP +F P
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMIAKPG--TKDYGALSVAVQYYTEPDIVLDVPPKSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P V ++V+ L+ D P V K FF +V + F +RK +++
Sbjct: 194 APAVTSSVIRCVLR---DKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMK 240
>gi|373497487|ref|ZP_09588011.1| dimethyladenosine transferase [Fusobacterium sp. 12_1B]
gi|404366584|ref|ZP_10971966.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
gi|313689428|gb|EFS26263.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
gi|371963241|gb|EHO80811.1| dimethyladenosine transferase [Fusobacterium sp. 12_1B]
Length = 264
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 140/254 (55%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ + E+ ++ +AV E D VLEIGPG G+LT +LL+ V+ +E D+
Sbjct: 6 KKKFGQNFLTDQKEVLRKIMEVSAVNENDTVLEIGPGEGALTALLLDTAEKVVTVEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++R++F + ++ D ++ ++ ++ +G KVVANIP+ I++ +I
Sbjct: 66 LEKILRKKFDGNPKYTLVMNDVLETDLKEYV---------GAG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ D+ E+ +++Q+E A R+ + + E + + V ++ E EY F +P+ F
Sbjct: 116 NKLIENRDVIDEIYIMVQKEVAERIC--AKKGKERSVLTLAVEYFGEAEYLFTIPKEAFT 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-EIEK 353
P PKVD+A ++ KL + Y + + FF V +AF KRK L + L S E+
Sbjct: 174 PIPKVDSAFMSIKLYKDDKYKKLVAEDIFFKYVKAAFANKRKNLLNNFTSLGMSKDELRV 233
Query: 354 ALGDVGLPATAAAD 367
L +VG+ T A+
Sbjct: 234 VLNEVGIKETERAE 247
>gi|408355407|ref|YP_006843938.1| 16S rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407726178|dbj|BAM46176.1| 16S rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 289
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 133/236 (56%), Gaps = 8/236 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +KSLGQ+++++ I + + A V + V+EIGPG G+LT L A V+
Sbjct: 17 LNKFGFSFKKSLGQNFIIDVNILNNILNVAGVTKDVGVIEIGPGMGALTEQLAQAADHVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ + ++ E A D + ++ ED +K +++ + F+ S K+VAN+P+
Sbjct: 77 AFEIDQRLEPILAETLADYDNISIVFEDVLKADVQAVINQHFK----PSQPIKLVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
++T +I QLL + +++Q+E A R+ EP+ ++ Y ++I V +Y+E + F
Sbjct: 133 YVTTPIIMQLLMSRLPLESITVMIQKEVAERMAAEPNSKS--YGSLSIAVQYYTEAIHTF 190
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
VP+T F PQP V++AV+ ++ V FFS+V ++F +RK LR +L
Sbjct: 191 NVPKTAFMPQPNVESAVLHLTFRKEPPV-HVEDEPFFFSLVRASFAQRRKTLRNNL 245
>gi|374339957|ref|YP_005096693.1| dimethyladenosine transferase [Marinitoga piezophila KA3]
gi|372101491|gb|AEX85395.1| dimethyladenosine transferase [Marinitoga piezophila KA3]
Length = 269
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 124/231 (53%), Gaps = 17/231 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ SE ++ +V E D V+EIGPG G+LT + GA + A E D+ +
Sbjct: 15 KKSLGQNFLSTSEYAKKIVKKGSVTEEDTVIEIGPGAGTLTEEIAKTGAKLYAFEIDERL 74
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ERF +++ DF+K +I S K +ANIP+ I++ +++
Sbjct: 75 KPLLLERFKEYQNVEIQFIDFLKANI------------SEIQKPKYIANIPYYITSPILE 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
++ F +L++Q+E R++ S + Y P++IFV F+ + E VP F P
Sbjct: 123 KIFFETPDFQLALLMVQKEYGERMMAKSGKN--YSPLSIFVQFFCKVEKVLNVPPHAFIP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
PKVD+ V+ KL D P + + K FF V AF+ +RK +R +L+ L
Sbjct: 181 NPKVDSVVL--KLTPKEDIPDI-NKKGFFKFVHVAFSQRRKTIRNNLKGLI 228
>gi|347727108|gb|AEP19912.1| dimethyladenosine transferase [Exiguobacterium sp. N39]
Length = 292
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 139/250 (55%), Gaps = 17/250 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ AA + E VLEIGPG GSLT V+A+E DQ +
Sbjct: 22 KKSLGQNFLIDLNILNKIVDAAELGEASGVLEIGPGIGSLTEQSAKRAKKVVALEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ + + + V+ D ++ I+ ++ ER S G VVAN+P+ ++T +
Sbjct: 82 LPILEDTMSPYPHVHVIHGDALELDIQ----AIVEREFFSQGIEDISVVANLPYYVTTPI 137
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
I +LL F +V+++Q+E A R+ +P T Y ++I + +Y+E F VP++
Sbjct: 138 IMRLLESQIKFRSLVMMIQKEVAERIGAKPG--TKAYGSLSIAIQYYAEANVSFIVPKSV 195
Query: 293 FFPQPKVDAAVVTFKL--KQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-QHLCTS- 348
F P P VD+AV+T K+ K A D V FF + ++F +RK + +L HL
Sbjct: 196 FMPAPNVDSAVITLKMRPKPAVD---VKDEAFFFEIARASFAQRRKTILNNLTNHLGKDK 252
Query: 349 -LEIEKALGD 357
+EIE+ LG+
Sbjct: 253 KMEIERLLGE 262
>gi|334881255|emb|CCB82094.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
pentosus MP-10]
Length = 295
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 130/241 (53%), Gaps = 12/241 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 17 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGANDNVIEIGPGIGALTEYLARAAHHVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + M+S E + F K+VAN+P+
Sbjct: 77 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAA-MIS--EHLDNERPF-KLVANLPY 132
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
I+T ++ LL GD+ F +V+++Q+E A RL EP T Y + I V + E
Sbjct: 133 YITTPILMNLL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMA 189
Query: 286 FKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VPRT F P P VD+A+V L T P +FF +V + F +RK L +LQ
Sbjct: 190 MVVPRTVFVPAPNVDSAIVKLTALPPRTHVP--FDEAAFFKVVKAGFAHRRKNLWNNLQS 247
Query: 345 L 345
L
Sbjct: 248 L 248
>gi|255527800|ref|ZP_05394651.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
gi|255508513|gb|EET84902.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
Length = 278
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 132/246 (53%), Gaps = 13/246 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++++ + + + V + D+V+EIGPG G+LT LL V AIE D ++
Sbjct: 19 KSLGQNFLIDNSVLQDIVDNSNVSKDDLVIEIGPGVGTLTKELLKKAKKVYAIELDSDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E + +++ +D +K L KS+ KVVAN+P+ ++T +I +
Sbjct: 79 PILNEELKEFNNFELVHKDALKVDFN----ELIGEEKST----KVVANLPYYVTTPIISK 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E R+ +PS T EY ++I V +Y + E KV +F P
Sbjct: 131 LLKENYKFESLTIMIQKEVGERIAAKPS--TKEYGALSILVQYYCDVEIVRKVSCDSFVP 188
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKA 354
+PKVD+ V+ K V S + FF +V S+FN +RK L L+ L E +EKA
Sbjct: 189 RPKVDSIVIKLT-KLLEPKVKVKSKELFFKVVRSSFNMRRKTLWNGLKSLGMKKESLEKA 247
Query: 355 LGDVGL 360
D +
Sbjct: 248 FIDANI 253
>gi|268318776|ref|YP_003292432.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785]
gi|262397151|emb|CAX66165.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785]
Length = 296
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 133/255 (52%), Gaps = 15/255 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQRGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V +V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
T+F P+PKVD+AVV L + P + F +V F +RK L +L+ L
Sbjct: 200 KSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCFAQRRKTLANNLKTLIKD 257
Query: 349 L-EIEKALGDVGLPA 362
E EK + D+GL A
Sbjct: 258 KDEREKLINDLGLDA 272
>gi|315917491|ref|ZP_07913731.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC
25563]
gi|313691366|gb|EFS28201.1| dimethyladenosine transferase [Fusobacterium gonidiaformans ATCC
25563]
Length = 271
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 138/254 (54%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYML-NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ +EI ++ + V D +LEIGPG G+LT +LL +VL IE D+
Sbjct: 6 KKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQEAKSVLNIEIDED 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +++++F +I++ +++ D ++ + +M ER KVVANIP+ I++ +I
Sbjct: 66 LKPILQKKFGNIEKYRLVMGDVLEVNFAEYMQ---ER-------TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
++++ + L++Q+E R+ + + E + + V ++++PEY F +P+ F
Sbjct: 116 QKIIENRSLIQAAFLMVQKEVGERIC--AKKGKERSALTLSVEYFAKPEYLFTIPKEYFT 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-CTSLEIEK 353
P PKVD+A + ++K+ + FF V + F KRK L + L T EI++
Sbjct: 174 PIPKVDSAFIGIRMKKEEEIAKQVPETLFFKYVKAGFFNKRKNLANNFLALGFTKAEIKE 233
Query: 354 ALGDVGLPATAAAD 367
L +G+ T A+
Sbjct: 234 KLATLGISETERAE 247
>gi|157149731|ref|YP_001449514.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis
substr. CH1]
gi|189028823|sp|A8AUQ4.1|RSMA_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157074525|gb|ABV09208.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis
substr. CH1]
Length = 290
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 13/274 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ ++ PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQ---PAVEVQDEKFFFKVTKASFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
L +L + S E+++ L + A A+ +
Sbjct: 236 TLWNNLTSYFGKSEEVKEKLENALAKANLVANVR 269
>gi|303229693|ref|ZP_07316481.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
gi|302515818|gb|EFL57772.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
Length = 284
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 128/230 (55%), Gaps = 17/230 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA +QEG+ VLEIGPG G+LT L +GA V AIE D ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGANVTAIELDTRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ A + ++ D +K + S M ++ F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLAQYSNVTIVHGDVLKLDVPSIM--------NNEPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E ALR+V +P T +Y +++ V +Y++P+ VP +F P
Sbjct: 136 LLESRLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYTKPDIVLDVPPKSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P V ++V+ L+ D P V K FF +V + F +RK +++
Sbjct: 194 APAVTSSVIRCVLR---DKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMK 240
>gi|354585782|ref|ZP_09004613.1| dimethyladenosine transferase [Paenibacillus lactis 154]
gi|353184107|gb|EHB49635.1| dimethyladenosine transferase [Paenibacillus lactis 154]
Length = 294
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 135/249 (54%), Gaps = 10/249 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + + LEIGPG G+LT L V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILGKIVEAAGLDKEKGALEIGPGIGALTEKLAQMAGAVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E D +KV D +K + LF + + G VVAN+P+ ++T ++
Sbjct: 85 IPILKEVLEPYDNVKVHHGDVLKVDLH----ELFRQDFAEVGKVSVVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ S + +Y ++I V +YSEP+ VP T F P
Sbjct: 141 KLLEEKLPLENIVVMIQKEVAERMA-ASPGSKDYGSLSIAVQYYSEPKLVCIVPHTVFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE----I 351
QP V++AV+ +++ +V FF +V ++F +RK + +L+ + E +
Sbjct: 200 QPNVESAVIRLAVREEPPV-SVEDESFFFEVVQASFAQRRKTIANNLKSRFFAEEGRERL 258
Query: 352 EKALGDVGL 360
E+ L + GL
Sbjct: 259 EQLLEEAGL 267
>gi|400290879|ref|ZP_10792906.1| dimethyladenosine transferase [Streptococcus ratti FA-1 = DSM
20564]
gi|399921670|gb|EJN94487.1| dimethyladenosine transferase [Streptococcus ratti FA-1 = DSM
20564]
Length = 291
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRHVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A ++A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AEKAAEIMAFEIDDRLVPILADTLRDFDNVKVINEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPE--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y E + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMEAKLAFIVPRTVFVPAPNVDSAILKMT-RREQPLVQVKDEDFFFRVCKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKAKL 255
>gi|116333120|ref|YP_794647.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367]
gi|122270191|sp|Q03T56.1|RSMA_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|116098467|gb|ABJ63616.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367]
Length = 296
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 132/243 (54%), Gaps = 9/243 (3%)
Query: 103 ATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A KA+ ++ R +KSLGQ+++ + I + AA V + D V+EIGPG G+LT +
Sbjct: 12 ARTKAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGPGIGALTEQIAK 71
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A E D++++ ++ E +K++ ED +K ++ + + FE + K+
Sbjct: 72 RAHKVVAFEIDENLLPVLDETLMDYKNVKIINEDILKANLPAVVADEFEADRP----LKL 127
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T ++ +L F +V+++Q E A RLV EP T Y +++ + + +
Sbjct: 128 VANLPYYITTPILMGVLQSTVRFEAIVVMMQAEVAERLVAEPG--TKAYGSLSVIMQYRA 185
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
E F VPRT F PQP VD+A++ ++A K+ FS V F +RK L
Sbjct: 186 HVEIAFNVPRTAFIPQPNVDSAIIRLTPREALPVNPYED-KALFSFVKGCFAHRRKSLWN 244
Query: 341 SLQ 343
+LQ
Sbjct: 245 NLQ 247
>gi|427419540|ref|ZP_18909723.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 7375]
gi|425762253|gb|EKV03106.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 7375]
Length = 278
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 137/247 (55%), Gaps = 14/247 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + +I +Q+ AAA + + D VLEIGPG G LT L+ V+A+E D+
Sbjct: 4 PRKRFGQHWLRDPQILNQILAAAELSDTDRVLEIGPGQGVLTKGLVPFTQAVVAVEVDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+V ++++F + ++ +++ DF+ + + + + KVVANIP+ I+ ++
Sbjct: 64 LVRQLQQQFQASERFHLIEGDFLDVDLAAALAD----HPNFQSPNKVVANIPYYITGPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + +VLL+Q+E A RL EP T + +++ + + +E E V
Sbjct: 120 EKLLGQIRQPNPQPYDSIVLLVQKEVADRLYAEPG--TKAFNGLSVRIQYLAECELICPV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P F P PKVD+AVV +L+ T + K ++V F+ KRKMLR +L+ L
Sbjct: 178 PAKAFKPAPKVDSAVV--RLRPRTFPVQANNPKLLDTLVKQGFSQKRKMLRNNLKSLIDR 235
Query: 349 LEIEKAL 355
++ K +
Sbjct: 236 DQLTKIM 242
>gi|90961211|ref|YP_535127.1| dimethyladenosine transferase [Lactobacillus salivarius UCC118]
gi|385840016|ref|YP_005863340.1| Ribosomal RNA small subunit methyltransferase A
(S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
dimethyltransferase) (16S ribosomal RNA
dimethyladenosine transferase) (16S ribosomal RNA
dimethylase) [Lactobacillus salivarius CECT 5713]
gi|119365028|sp|Q1WV73.1|RSMA_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|90820405|gb|ABD99044.1| Dimethyladenosine transferase [Lactobacillus salivarius UCC118]
gi|300214137|gb|ADJ78553.1| Ribosomal RNA small subunit methyltransferase A
(S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
dimethyltransferase) (16S ribosomal RNA
dimethyladenosine transferase) (16S ribosomal RNA
dimethylase) [Lactobacillus salivarius CECT 5713]
Length = 296
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 26 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K +++ + FE K+VAN+P+ I+T ++
Sbjct: 86 LPVLADTLSPYENVEVVHQDILKADLKALIAEHFE----PGHKLKLVANLPYYITTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G F +V+++Q+E A RL P T Y +++ V + + E F VP+T F
Sbjct: 142 HLLDSGIEFETIVVMMQKEVAERLAANPG--TKAYGSLSVAVQYEMDSEIAFIVPKTVFV 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ K+ K F +V +F +RK L +LQ L
Sbjct: 200 PQPNVDSAIIVLNKKKVKPKEP-QDEKHFKKLVKGSFMHRRKSLWNNLQSL 249
>gi|418960653|ref|ZP_13512540.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus salivarius SMXD51]
gi|380344320|gb|EIA32666.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus salivarius SMXD51]
Length = 296
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 26 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K +++ + FE K+VAN+P+ I+T ++
Sbjct: 86 LPVLADTLSPYENVEVVHQDILKADLKALIAEHFE----PGHKLKLVANLPYYITTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G F +V+++Q+E A RL P T Y +++ V + + E F VP+T F
Sbjct: 142 HLLDSGIEFETIVVMMQKEVAERLAANPG--TKAYGSLSVAVQYEMDSEIAFIVPKTVFV 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ K+ K F +V +F +RK L +LQ L
Sbjct: 200 PQPNVDSAIIVLNKKKVKPKEP-QDEKHFKKLVKGSFMHRRKSLWNNLQSL 249
>gi|154684561|ref|YP_001419722.1| dimethyladenosine transferase [Bacillus amyloliquefaciens FZB42]
gi|375360733|ref|YP_005128772.1| dimethyladenosine transferase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384263673|ref|YP_005419380.1| dimethyladenosine transferase KsgA [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387896568|ref|YP_006326864.1| dimethyladenosine transferase [Bacillus amyloliquefaciens Y2]
gi|394994176|ref|ZP_10386904.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. 916]
gi|421729462|ref|ZP_16168594.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451348568|ref|YP_007447199.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens IT-45]
gi|154350412|gb|ABS72491.1| KsgA [Bacillus amyloliquefaciens FZB42]
gi|371566727|emb|CCF03577.1| dimethyladenosine transferase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497026|emb|CCG48064.1| dimethyladenosine transferase KsgA [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387170678|gb|AFJ60139.1| dimethyladenosine transferase [Bacillus amyloliquefaciens Y2]
gi|393804952|gb|EJD66343.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. 916]
gi|407076706|gb|EKE49687.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449852326|gb|AGF29318.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens IT-45]
Length = 293
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K ++ S+ E + V AN+P+ ++T +I
Sbjct: 84 LPILNDTLSPYDNVTIIHQDVLKADVK----SVIEEQFQDCDEIMVTANLPYYVTTPIIM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 140 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMTVPKTVFV 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 198 PQPNVDSAVIRLLLR---DGPAVDVDNEPFFFQLIKASFAQRRK 238
>gi|385267068|ref|ZP_10045155.1| dimethyladenosine transferase [Bacillus sp. 5B6]
gi|385151564|gb|EIF15501.1| dimethyladenosine transferase [Bacillus sp. 5B6]
Length = 293
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K ++ S+ E + V AN+P+ ++T +I
Sbjct: 84 LPILNDTLSPYDNVTIIHQDVLKADVK----SVIEEQFQDCDEIMVTANLPYYVTTPIIM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 140 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMTVPKTVFV 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 198 PQPNVDSAVIRLLLR---DGPAVDVDNESFFFQLIKASFAQRRK 238
>gi|339640026|ref|ZP_08661470.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453295|gb|EGP65910.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 056
str. F0418]
Length = 290
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 17/269 (6%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ KS
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KSPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVAVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEI----EKALGDVGL 360
L +L + S EI E+AL + L
Sbjct: 236 TLWNNLTSYFGKSEEIKAKLERALETIDL 264
>gi|407717887|ref|YP_006795292.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Leuconostoc
carnosum JB16]
gi|407241643|gb|AFT81293.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc carnosum JB16]
Length = 295
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 135/265 (50%), Gaps = 15/265 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K LGQ+++ + I + A + D VLEIGPG GSLT L A V+
Sbjct: 17 LNEYGLHAKKKLGQNFLTDLNILHGIVDTAEITNDDFVLEIGPGIGSLTEQLARAAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D MV ++ + D +KV++ D +K + + + F + + KVVAN+P+
Sbjct: 77 ALEIDSQMVAVLSDTLQPYDNVKVIENDVLKVDLNELIAAEFGQNAT----VKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T ++ QLL + +V+++Q E A RL P T EY + + + ++++ +
Sbjct: 133 YITTPILMQLLRANISWDNIVVMMQREVADRLNAMPG--TKEYGVLTLTLQYFAQAQLAM 190
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK-----MLRKS 341
KV +F P P VD+AVV KL T V + F ++ +F+ +RK ML+
Sbjct: 191 KVAAASFNPAPNVDSAVV--KLTPLTPEIVVDQPERLFGVIKGSFSHRRKSLWNNMLQTY 248
Query: 342 LQHLCTSLEIEKALGDVGL-PATAA 365
+ T +I AL G+ PA A
Sbjct: 249 GKDAATKEKITTALESAGISPAIRA 273
>gi|282848961|ref|ZP_06258350.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745]
gi|282581236|gb|EFB86630.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745]
Length = 284
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 13/228 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVHAAELTAGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS D ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYDNVRIIHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E ALR++ +P T +Y +++ V +Y+EP+ VP +F P
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMIAKPG--TKDYGALSVAVQYYTEPDIVLDVPPKSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P V ++V+ L+ V K FF +V + F +RK +++
Sbjct: 194 APAVTSSVIRCVLRNKPPV-DVIDEKLFFRVVKAGFAQRRKTFSNTMK 240
>gi|427414458|ref|ZP_18904648.1| dimethyladenosine transferase [Veillonella ratti ACS-216-V-Col6b]
gi|425714418|gb|EKU77423.1| dimethyladenosine transferase [Veillonella ratti ACS-216-V-Col6b]
Length = 286
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 129/229 (56%), Gaps = 15/229 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + D + AA + G+ VLEIGPG G+LT L + A V A+E D+ ++
Sbjct: 25 KKLGQNFLISRHVVDDIVKAAQLVPGEPVLEIGPGIGTLTQGLAQSKADVTAVELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ A D + ++ D +K +I M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLAGYDNVNIIHGDILKVNIPELM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL M +V+++Q+E A R+V EP T Y +++ V +Y+EP+ F+V +F P
Sbjct: 136 LLEMKLPIERLVVMVQKEVAERMVAEPG--TKAYGALSVAVQYYTEPDIVFEVSPKSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P+V +AV+ +L++ D P V K F ++ +AF +RK +++
Sbjct: 194 PPEVTSAVIRCRLRK--DPPVQVADEKLLFRVIKAAFAQRRKTFSNTMK 240
>gi|422866408|ref|ZP_16913033.1| dimethyladenosine transferase [Streptococcus sanguinis SK1058]
gi|327488831|gb|EGF20630.1| dimethyladenosine transferase [Streptococcus sanguinis SK1058]
Length = 290
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 131/246 (53%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRGFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVAVQDEKFFFKISKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|317499422|ref|ZP_07957689.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893294|gb|EFV15509.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 285
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 141/257 (54%), Gaps = 13/257 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + +++ +AA V + D VLEIGPG G++T L V+A+E D+++
Sbjct: 21 QKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGTMTQYLAENAREVMAVEIDKNL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + +L D +K I + K+ KVVAN+P+ I+T +I
Sbjct: 81 IPILSDTLSAYDNVSILNADILKVDIAKIV-----EEKNGGKPVKVVANLPYYITTPIIM 135
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + +++Q+E A R+ + T +Y +++ V +Y+EP VP F P
Sbjct: 136 GLFESHVPIDSITVMVQKEVADRM-QSGPGTKDYGALSLAVQYYAEPYVVANVPPNCFMP 194
Query: 296 QPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC----TSLE 350
+PKV +AV+ K K A VT+ K F ++ ++FN +RK L+ +++ + +
Sbjct: 195 RPKVGSAVIRLTKYKDA--LIKVTNEKLLFQLIRASFNQRRKTLQNGIKNFGGLNFSKEQ 252
Query: 351 IEKALGDVGLPATAAAD 367
+ +AL ++ LPA+ +
Sbjct: 253 VAQALEEMELPASVRGE 269
>gi|357236972|ref|ZP_09124315.1| dimethyladenosine transferase [Streptococcus criceti HS-6]
gi|356884954|gb|EHI75154.1| dimethyladenosine transferase [Streptococcus criceti HS-6]
Length = 290
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 131/246 (53%), Gaps = 8/246 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A V + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEVDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + D ++V+ +D +K +++ + S K+
Sbjct: 65 AENAAEVMAFEIDERLIPILADTLRDFDNVQVVNQDILKADLQTQIQSF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVIMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y E E F VPRT F P P VD+A++ +++ V F + ++F +RK L
Sbjct: 179 YMEAEVAFIVPRTVFVPAPNVDSAILKM-VRRNQPLVEVQDEDFLFDVAKASFVHRRKTL 237
Query: 339 RKSLQH 344
+L +
Sbjct: 238 WNNLTN 243
>gi|291567875|dbj|BAI90147.1| dimethyladenosine transferase [Arthrospira platensis NIES-39]
Length = 274
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 132/235 (56%), Gaps = 14/235 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + AA + D +LEIGPGTG LT LL ++V+AIE D+
Sbjct: 6 PRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLPKASSVVAIEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++F ID +LQ D + + +H LS F + + + KVVANIP+NI+ +I
Sbjct: 66 LCVQLAKKFGKIDNFLLLQGDILSFDLNAH-LSAFPQFQHPN---KVVANIPYNITGPII 121
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
+ LL P F +VLL+Q+E RL +PS + + +++ V + +E ++ V
Sbjct: 122 EGLLGTIAKPALKPFDAIVLLVQKEVGDRLCAKPS--SKAFGALSVRVQYLAECDWICHV 179
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P F+P PKVD+AVV + + PA + + ++V F+ +RKMLR +L+
Sbjct: 180 PAKAFYPPPKVDSAVVRLRPRPIAS-PA-QNPQLLETLVKLGFSTRRKMLRNNLK 232
>gi|170017706|ref|YP_001728625.1| dimethyladenosine transferase [Leuconostoc citreum KM20]
gi|414596051|ref|ZP_11445627.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE E16]
gi|421877404|ref|ZP_16308951.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE C10]
gi|421878828|ref|ZP_16310305.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE C11]
gi|226732593|sp|B1N079.1|RSMA_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|169804563|gb|ACA83181.1| Dimethyladenosine transferase [Leuconostoc citreum KM20]
gi|372556831|emb|CCF25071.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE C10]
gi|390447314|emb|CCF26425.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE C11]
gi|390482984|emb|CCF27688.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE E16]
Length = 295
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 12/265 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + A + D V+EIGPG G+LT L + V+
Sbjct: 17 LNQYGLHAKKKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQLARSAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D HMV ++ E D +KV++ D +K ++ + + F K+VAN+P+
Sbjct: 77 AFEIDPHMVAVLAETLLPYDNVKVIENDILKVNLAHVIATEF----GEGAHVKIVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL + T Y + + + +Y++ + K
Sbjct: 133 YITTPILMQLLRAKISWDNIVVMMQREVADRL-NAEIGTKAYGVLTLTIQYYAQAQLAIK 191
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
VP + F P P VD+AVV L V + FS+V +F +RK L ++ +
Sbjct: 192 VPASAFNPSPNVDSAVVM--LTPIVPETVVDNPDKLFSVVKGSFAHRRKSLWNNMLQMFG 249
Query: 348 SLE-----IEKALGDVGLPATAAAD 367
E I+ AL V + ++ A+
Sbjct: 250 KQEDVKQRIQDALDSVNIASSIRAE 274
>gi|334134055|ref|ZP_08507584.1| dimethyladenosine transferase [Paenibacillus sp. HGF7]
gi|333608402|gb|EGL19700.1| dimethyladenosine transferase [Paenibacillus sp. HGF7]
Length = 306
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 8/236 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN +KSLGQ+++ + + + +AA + LEIGPG G+LT L V+
Sbjct: 27 LNRHNLVLKKSLGQNFLTDGNVLRNIISAAELAPEKGALEIGPGIGALTQQLAKEAGRVV 86
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E DQ ++ ++RE + +V+ D +K +R L E + S VVAN+P+
Sbjct: 87 AVEIDQRLLPILRETLSPYPTAEVVHGDVLKLDLR----QLIEEKFSGLSGISVVANLPY 142
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T +I +LL +V+++Q+E A R+ +P EY ++I V FY E E
Sbjct: 143 YITTPIIMKLLEEKLPLENIVVMIQKEVADRMAAKPG--GKEYGSLSIAVQFYCEAELVT 200
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
VPRT F PQP VD+AV+ +L++ V FF +V ++F +RK + +L
Sbjct: 201 IVPRTVFVPQPNVDSAVIRLRLRKGPPV-EVADEDFFFEVVQASFAQRRKTIYNNL 255
>gi|365154899|ref|ZP_09351297.1| ribosomal RNA small subunit methyltransferase A [Bacillus smithii
7_3_47FAA]
gi|363629010|gb|EHL79703.1| ribosomal RNA small subunit methyltransferase A [Bacillus smithii
7_3_47FAA]
Length = 291
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 135/230 (58%), Gaps = 12/230 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + +++ AA + + +EIGPG G+LT L V+A E D+ +
Sbjct: 22 KKSLGQNFLVDPNVLNRITEAAGLTKETAAIEIGPGIGALTEHLARKAGKVVAFEIDKRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++++ + ++++ +D +K +++ + ++ SG++ VVAN+P+ ++T +
Sbjct: 82 LPILKDTLSPYKNVEIIHQDVLKANVKEVI------KEELSGYSDIMVVANLPYYVTTPI 135
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
I +LL +V+++Q+E A RL +P T EY ++I V +Y+E + F VP+T
Sbjct: 136 IMKLLEECLPIRGLVVMMQKEVADRLSAQPG--TKEYGSLSIAVQYYTEAKTAFVVPKTV 193
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
F PQP VD+AV+ K ++ V + FFS+V +AF +RK L +L
Sbjct: 194 FIPQPNVDSAVIHLK-RRTKPLVEVDNESFFFSLVKAAFAQRRKTLINNL 242
>gi|339442002|ref|YP_004708007.1| hypothetical protein CXIVA_09380 [Clostridium sp. SY8519]
gi|338901403|dbj|BAK46905.1| hypothetical protein CXIVA_09380 [Clostridium sp. SY8519]
Length = 293
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 137/253 (54%), Gaps = 13/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++S I +++ AA + + D VLEIGPG G++T L A V A+E D +
Sbjct: 28 QKKFGQNFLIDSNILEEIVEAAGITKTDYVLEIGPGIGTMTQYLAQAARAVTAVEIDDKL 87
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ +++ D +K L+ K++ KVVAN+P+ I+T +I
Sbjct: 88 IPILENTLEEFPNAEIIHGDILKLD-----LNRLVEEKNNGNPIKVVANLPYYITTPIIM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+L + +++Q+E A R+ + + +Y +++ V +Y+EPE +VP + F P
Sbjct: 143 ELFESRVPMESITIMVQKEVADRM-QTGPGSKDYGALSLAVQYYAEPEIVAEVPPSCFMP 201
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHL----CTSLE 350
QPKV +AV+ +L + P V+ K F+++ ++FN +RK L L++ T +
Sbjct: 202 QPKVGSAVI--RLTRHRKPPVEVSDEKLLFAVIRASFNQRRKTLANGLKNAPELHFTKEQ 259
Query: 351 IEKALGDVGLPAT 363
E A+ ++G P T
Sbjct: 260 AETAIRNIGKPLT 272
>gi|81429267|ref|YP_396268.1| dimethyladenosine transferase [Lactobacillus sakei subsp. sakei
23K]
gi|119365029|sp|Q38V22.1|RSMA_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78610910|emb|CAI55962.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N,
N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus
sakei subsp. sakei 23K]
Length = 297
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 133/243 (54%), Gaps = 10/243 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T K L G +KSLGQ+++ N I Q+ A + + D V+EIGPG GSLT +
Sbjct: 10 TKKILKRYGFKFKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGSLTEQIARKA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
VL+ E D ++ ++++ + VL +D ++ + + + F+ + + K+VA
Sbjct: 70 HQVLSFEIDDRLIPVLKDTLNHYHNVTVLNQDILEADLPTLIAKHFDGQHN----LKIVA 125
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T ++ LL G +VL++Q+E A R ++ + + Y ++I V +SE +
Sbjct: 126 NLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAER-IDAAPGSKAYGSLSIAVQLHSEVK 184
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKS 341
F VP+T F PQP VD+A+V F +Q P VT + + F +V AF +RK L +
Sbjct: 185 LAFIVPKTAFVPQPNVDSAIVEFVGRQE---PLVTVQNQQLFDQLVRGAFAQRRKTLWNN 241
Query: 342 LQH 344
LQ+
Sbjct: 242 LQN 244
>gi|428203434|ref|YP_007082023.1| dimethyladenosine transferase [Pleurocapsa sp. PCC 7327]
gi|427980866|gb|AFY78466.1| dimethyladenosine transferase [Pleurocapsa sp. PCC 7327]
Length = 284
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 140/259 (54%), Gaps = 14/259 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + AA +++ D +LEIGPGTG LT LL +V+A+E D+
Sbjct: 18 PRKRFAQHWLRSETALNNIVEAARLKKSDRLLEIGPGTGILTRRLLPEVQSVVAVEIDRD 77
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + ++ +LQ D + I S ++ F R ++ + KVVANIP+NI+ ++
Sbjct: 78 LCKKLVKSLGKVENFLLLQGDILSLDIESSLVD-FPRFQNPN---KVVANIPYNITGSIL 133
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + +VLLLQ+E A RL +P T Y +++ V + + E V
Sbjct: 134 EKLLGTIANPTTKNYELIVLLLQKEVAERLTAKPG--TKAYGALSVQVQYLANCELICDV 191
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P +F+P PKVD+ V+ + K D PA + + ++V F KRKMLR +L+ + S
Sbjct: 192 PARDFYPPPKVDSTVIRLQPK-VNDNPA-KNPQFLQTLVKVGFANKRKMLRNNLKSMIDS 249
Query: 349 LEIEKALGDVGLPATAAAD 367
+++ + + + A+
Sbjct: 250 DRLDRVFTQLNINPQSRAE 268
>gi|189425372|ref|YP_001952549.1| dimethyladenosine transferase [Geobacter lovleyi SZ]
gi|189421631|gb|ACD96029.1| dimethyladenosine transferase [Geobacter lovleyi SZ]
Length = 271
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 13/230 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK+LGQ+++ + I ++ A +Q D VLE+GPG G+LT +L ++A+E D+
Sbjct: 8 PRKALGQNFLSDHNIIRKILTTAHLQPTDRVLEVGPGRGALTELLAAQARHLVAVEFDRD 67
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+RERFA Q+ + ++D ++ FE+ S + KVVAN+P+NIST V+
Sbjct: 68 LAALLRERFAGQPQVMIHEQDILQVD--------FEQLLGSHTY-KVVANLPYNISTPVL 118
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+ L FS +V++LQ+E RL +P S+Y + + + E + +F VP F
Sbjct: 119 FRFLEERQRFSRLVVMLQKEVGERLAAQPD--CSDYGILTVLFRQWFEVKREFLVPPGCF 176
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
FP PKVD+ V++ A+ V + F +V +AF +RK L L+
Sbjct: 177 FPPPKVDSVVISLTPLVASRV-EVGNQALFERLVKAAFGMRRKTLWNCLK 225
>gi|299820686|ref|ZP_07052575.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
gi|299817707|gb|EFI84942.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
Length = 295
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 5/227 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++S I ++A A + +EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDSNILKRIAETAGLNAESNAMEIGPGIGALTEHLARNAKEVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + +K++ +D +K +R+ +L E KVVAN+P+ ++T +I
Sbjct: 83 IPILDDTLSPYPNVKIIHQDVLKADVRA---ALTENFSDPEAPLKVVANLPYYVTTPIIL 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL G + +LQ+E A R + T Y ++I + +Y E E F VP+T F P
Sbjct: 140 KLLHEGIPVDSMTFMLQKEVADR-ISAVPGTKSYGSLSIAIQYYMEAELAFIVPKTVFMP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
QP VD+A++ K ++ V + FF + +AF +RK L +L
Sbjct: 199 QPNVDSAIIHLK-RREKPLAHVENETFFFEVTRAAFAQRRKTLWNNL 244
>gi|409994071|ref|ZP_11277192.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Arthrospira platensis str. Paraca]
gi|409935063|gb|EKN76606.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Arthrospira platensis str. Paraca]
Length = 276
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 132/235 (56%), Gaps = 14/235 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + AA + D +LEIGPGTG LT LL ++V+AIE D+
Sbjct: 6 PRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLPKASSVVAIEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++F ID +LQ D + + +H LS F + + + KVVANIP+NI+ +I
Sbjct: 66 LCVQLAKKFGKIDNFLLLQGDILSFDLNAH-LSAFPQFQHPN---KVVANIPYNITGPII 121
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
+ LL P F +VLL+Q+E RL +PS + + +++ V + +E ++ V
Sbjct: 122 EGLLGTIAKPALKPFDAIVLLVQKEVGDRLCAKPS--SKAFGALSVRVQYLAECDWICHV 179
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P F+P PKVD+AVV + + PA + + ++V F+ +RKMLR +L+
Sbjct: 180 PAKAFYPPPKVDSAVVRLRPRPIAS-PA-QNPQLLETLVKLGFSTRRKMLRNNLK 232
>gi|429503575|ref|YP_007184759.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|452854105|ref|YP_007495788.1| Ribosomal RNA small subunit methyltransferase A [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|429485165|gb|AFZ89089.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452078365|emb|CCP20115.1| Ribosomal RNA small subunit methyltransferase A [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 293
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K ++ S+ E V AN+P+ ++T +I
Sbjct: 84 LPILNDTLSPYDNVTIIHQDVLKADVK----SVIEEHFQDCDEIMVTANLPYYVTTPIIM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 140 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMTVPKTVFV 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 198 PQPNVDSAVIRLLLR---DGPAVDVDNEPFFFQLIKASFAQRRK 238
>gi|422879744|ref|ZP_16926209.1| dimethyladenosine transferase [Streptococcus sanguinis SK1059]
gi|422929589|ref|ZP_16962530.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 29667]
gi|422932558|ref|ZP_16965489.1| dimethyladenosine transferase [Streptococcus sanguinis SK340]
gi|332365155|gb|EGJ42918.1| dimethyladenosine transferase [Streptococcus sanguinis SK1059]
gi|339614829|gb|EGQ19519.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 29667]
gi|339618309|gb|EGQ22907.1| dimethyladenosine transferase [Streptococcus sanguinis SK340]
Length = 290
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 131/246 (53%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPV 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVEVQDEKFFFKISKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|406659843|ref|ZP_11067981.1| dimethyladenosine transferase [Streptococcus iniae 9117]
gi|405577952|gb|EKB52100.1| dimethyladenosine transferase [Streptococcus iniae 9117]
Length = 290
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 10/267 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + S K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQIKSF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ V FF + F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPLVRVQDEDFFFRLAKVGFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATA 364
+L H + EI+ L + GL A
Sbjct: 238 WNNLTSHFGKTDEIKAKL-EAGLENAA 263
>gi|157690824|ref|YP_001485286.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
gi|166987691|sp|A8F909.1|RSMA_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157679582|gb|ABV60726.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
Length = 292
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 131/232 (56%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K + + E + VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVG----KVIEENFADCKEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ PS + EY ++I V +Y+E + VP+T F
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAIPS--SKEYNSLSIAVQYYTEAKTVMVVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+AV+ +++ PAV+ + + FF ++ ++F +RK L +L +
Sbjct: 197 PQPNVDSAVIKLTVRET---PAVSVENDEFFFQLIRASFGQRRKTLMNNLMN 245
>gi|167041696|gb|ABZ06440.1| putative ribosomal RNA adenine dimethylase [uncultured marine
microorganism HF4000_010I05]
Length = 312
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 12/230 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRKSLGQH++ + + ++ AA + ++VLEIGPG G+LT L++ GA V+AIE D H
Sbjct: 38 PRKSLGQHFLADGRVLTRIVNAAEIASQELVLEIGPGQGALTRRLVDRGAQVVAIELDHH 97
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + +R + L V++ D K ++S + S KV+ N+P+ + +I
Sbjct: 98 LASTLPDRLGNPPNLTVVEADARKVDLKSLL--------GSGAVYKVLGNLPYYAANPII 149
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
++ L + +V+ LQ+E A + + +++ V +Y+E + VP F
Sbjct: 150 RRFLEAPNQPQLMVVTLQQEVARSMAAAPGKMGF---LSVAVQYYAETKVVCTVPPRAFR 206
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P PKV +AVV ++ V ++FF++V + F RK LR SL H
Sbjct: 207 PPPKVTSAVVRLDIRPVPPV-DVAEVEAFFALVRAGFASPRKQLRNSLAH 255
>gi|227891849|ref|ZP_04009654.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741]
gi|227866312|gb|EEJ73733.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741]
Length = 296
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 26 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K + + + FE K+VAN+P+ I+T ++
Sbjct: 86 LPVLADTLSPYENVEVIHQDILKADLEALIAEHFE----PGHKLKLVANLPYYITTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G F +V+++Q+E A RL P T Y +++ V + + E F VP+T F
Sbjct: 142 HLLDSGIEFETIVVMMQKEVAERLAANPG--TKAYGSLSVAVQYEMDSEIAFIVPKTVFV 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ K+ K F +V +F +RK L +LQ L
Sbjct: 200 PQPNVDSAIIVLNKKKVKPKEP-QDEKHFKKLVKGSFMHRRKSLWNNLQSL 249
>gi|194017982|ref|ZP_03056589.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
gi|194010319|gb|EDW19894.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
Length = 292
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 131/232 (56%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K + + E + VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVG----KVIEENFADCKEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ PS + EY ++I V +Y+E + VP+T F
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAVPS--SKEYNSLSIAVQYYTEAKTVMVVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+AV+ +++ PAV+ + + FF ++ ++F +RK L +L +
Sbjct: 197 PQPNVDSAVIKLTVRET---PAVSVENDEFFFQLIRASFGQRRKTLMNNLMN 245
>gi|260437839|ref|ZP_05791655.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876]
gi|292809864|gb|EFF69069.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876]
Length = 287
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 11/231 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ I +++ A V + D VLEIGPG G++T +L V A+E D ++
Sbjct: 21 QKKFGQNFLIDEGIVNKIVREAGVTKDDFVLEIGPGIGTMTQLLCEQAGGVAAVEIDTNL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D + ++ ED +K I+ K+ KVVAN+P+ I+T +I
Sbjct: 81 IPILKETLAEYDNVTIINEDILKVDIKK-----LAEEKNGGKPIKVVANLPYYITTPIIM 135
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V +YS+P+ VP F
Sbjct: 136 GLFESNVPIDSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYSKPQVVINVPPECFI 193
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+P V +AV+ +L + + P V K F ++ ++FN +RK L L +
Sbjct: 194 PRPNVGSAVI--RLTRYKEPPVKVKDEKLMFKLIRASFNQRRKTLANGLNN 242
>gi|163791033|ref|ZP_02185454.1| dimethyladenosine transferase [Carnobacterium sp. AT7]
gi|159873678|gb|EDP67761.1| dimethyladenosine transferase [Carnobacterium sp. AT7]
Length = 297
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 6/227 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + AA+ + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFIVDPNILSNIVAASDIDKNTNVIEVGPGIGALTEHLARASKEVIAFEIDNRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ D +K +++ + + + + VVAN+P+ I+T +I
Sbjct: 85 LPVLADTLSPYDNISVVHSDVLKVNLQESLPEMIDLDEP----LVVVANLPYYITTPIIM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + +++Q+E A R+ + + Y ++I + +Y E E F VP+T F P
Sbjct: 141 HFLETPVRIDGLTIMMQKEVAERITA-APGSKAYGSLSIAIQYYMEAEVAFIVPKTVFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
QP VD+A++ ++AT V + KSFF++V SAF +RK L +L
Sbjct: 200 QPNVDSAIIKLT-RRATPSVTVNNEKSFFALVRSAFVQRRKTLWNNL 245
>gi|392947700|ref|ZP_10313332.1| Dimethyladenosine transferase [Lactobacillus pentosus KCA1]
gi|392437111|gb|EIW15003.1| Dimethyladenosine transferase [Lactobacillus pentosus KCA1]
Length = 295
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 127/241 (52%), Gaps = 12/241 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 17 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGANDNVIEIGPGIGALTEYLARAAHHVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 77 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 132
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
I+T ++ LL GD+ F +V+++Q+E A RL EP T Y + I V + E
Sbjct: 133 YITTPILMNLL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMA 189
Query: 286 FKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VPRT F P P VD+A+V L T P +FF +V + F +RK L +LQ
Sbjct: 190 MVVPRTVFVPAPNVDSAIVKLTALPPRTHLP--FDEAAFFKVVKAGFAHRRKNLWNNLQS 247
Query: 345 L 345
L
Sbjct: 248 L 248
>gi|308171933|ref|YP_003918638.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens DSM 7]
gi|384157655|ref|YP_005539728.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
amyloliquefaciens TA208]
gi|384162448|ref|YP_005543827.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens LL3]
gi|384166670|ref|YP_005548048.1| dimethyladenosine transferase [Bacillus amyloliquefaciens XH7]
gi|307604797|emb|CBI41168.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens DSM 7]
gi|328551743|gb|AEB22235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens TA208]
gi|328910003|gb|AEB61599.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens LL3]
gi|341825949|gb|AEK87200.1| dimethyladenosine transferase [Bacillus amyloliquefaciens XH7]
Length = 293
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ D +K ++ S+ E + V AN+P+ ++T +I
Sbjct: 84 LPILNDTLSPYDNVTIIHHDVLKADVK----SVIEEQFQDCDEIMVTANLPYYVTTPIIM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 140 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMTVPKTVFV 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 198 PQPNVDSAVIRLLLR---DGPAVDVDNESFFFQLIKASFAQRRK 238
>gi|315654032|ref|ZP_07906948.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
gi|349611934|ref|ZP_08891164.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
7_1_47FAA]
gi|315488728|gb|EFU78374.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
gi|348608399|gb|EGY58384.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
7_1_47FAA]
Length = 295
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 141/254 (55%), Gaps = 17/254 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I +L+ S++ L++Q+E A R + S ++ Y P+ I V + ++ F+V
Sbjct: 141 ITTPIILKLMHSPVKISQLTLMMQKEVAER-ISASHKSKAYGPLTIAVKKDMDVDFAFEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
RT+F P PKVD+AVV K ++ + + F+ +V AF+ +RK L +L+ L
Sbjct: 200 KRTSFMPSPKVDSAVVVLK---PLEHKLLIEHEDLFNQIVKLAFSQRRKTLNNNLKSLIK 256
Query: 348 SLEI-EKALGDVGL 360
+ +K L D+ L
Sbjct: 257 DKDARQKLLNDLNL 270
>gi|310657782|ref|YP_003935503.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [[Clostridium]
sticklandii]
gi|308824560|emb|CBH20598.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [[Clostridium]
sticklandii]
Length = 289
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 133/243 (54%), Gaps = 10/243 (4%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + SK F KSLGQ+++++ + Q+ +A + D V+EIGPG G+LT L
Sbjct: 7 HKITKDIVSKYGFRFTKSLGQNFLVDEHVLSQIVDSAEIDSEDTVIEIGPGIGTLTRELS 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V++IE D++++ ++ E A D +K++ +D +K + + RK K
Sbjct: 67 YRAKQVISIEIDKNLIPILSETLADRDNIKIINQDILKTDLHELVNEFSPDRK-----VK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
VVAN+P+ I+T +I + L +V+++Q+E A R+ PS T +Y +++ V +Y
Sbjct: 122 VVANLPYYITTPIIMRFLEEKVPLKTMVIMIQKEVANRINAVPS--TKDYGSLSVAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ + K P+ F P+P VD+AV+ ++K+ + FF +V +AF+ +RK L
Sbjct: 180 CDTDIVAKAPKGAFIPEPGVDSAVIKLEVKEDKGIELI-DEDLFFEVVKAAFSKRRKTLL 238
Query: 340 KSL 342
+L
Sbjct: 239 NAL 241
>gi|20094370|ref|NP_614217.1| dimethyladenosine transferase (rRNA methylase) [Methanopyrus
kandleri AV19]
gi|27151577|sp|Q8TWU7.1|RSMA_METKA RecName: Full=Probable ribosomal RNA small subunit
methyltransferase A; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName:
Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
dimethyltransferase
gi|19887438|gb|AAM02147.1| Dimethyladenosine transferase (rRNA methylase) [Methanopyrus
kandleri AV19]
Length = 278
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 108 LNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
L SK G PR+ LGQH+M++ I + + AA V+E DIVLEIGPG G LT L+ V
Sbjct: 10 LRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQV 69
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D MV +++ L++++ DF++ + KVVANIP
Sbjct: 70 IAVELDGRMVEILKRELGEAPNLEIVRADFLEYDV-------------PDDVNKVVANIP 116
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYK 285
+NIS+ + +LL + VL Q E A R+V EP + +Y + + VN ++ E
Sbjct: 117 YNISSPITFKLLELD--IDVAVLTYQREFAERMVAEPG--SKKYSRLTVMVNLLADVELL 172
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
VPR F P P+V ++VV K + P V + S+ + F K K +R +L
Sbjct: 173 RGVPRRAFIPPPRVGSSVVRLTPKSEEERPDV-DPDTLESVCRALFQHKNKTVRNAL 228
>gi|257865533|ref|ZP_05645186.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
gi|257871870|ref|ZP_05651523.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
gi|257875149|ref|ZP_05654802.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
gi|257799467|gb|EEV28519.1| dimethyladenosine transferase [Enterococcus casseliflavus EC30]
gi|257806034|gb|EEV34856.1| dimethyladenosine transferase [Enterococcus casseliflavus EC10]
gi|257809315|gb|EEV38135.1| dimethyladenosine transferase [Enterococcus casseliflavus EC20]
Length = 295
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 5/229 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L VLA E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLAKHAKQVLAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + +K++ +D ++ + + + S F +S KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYQNVKIIHQDVLQADLATTIQSAFSDTAAS---LKVVANLPYYITTPIMM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L E+V+++Q+E A R + T Y ++I V +Y E + F VP+T F P
Sbjct: 142 HFLESQVKVDEMVVMMQKEVADR-ISAVPGTKAYGSLSIAVQYYMEAKLAFIVPKTVFVP 200
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
QP VD+A++ +++ AVT K FF + +AF +RK L +LQ+
Sbjct: 201 QPNVDSAILKLT-RRSQPAVAVTDEKEFFKLTKAAFQLRRKTLWNNLQN 248
>gi|422861576|ref|ZP_16908216.1| dimethyladenosine transferase [Streptococcus sanguinis SK330]
gi|327468444|gb|EGF13929.1| dimethyladenosine transferase [Streptococcus sanguinis SK330]
Length = 290
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 131/246 (53%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVAVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|422857541|ref|ZP_16904191.1| dimethyladenosine transferase [Streptococcus sanguinis SK1057]
gi|327462724|gb|EGF09046.1| dimethyladenosine transferase [Streptococcus sanguinis SK1057]
Length = 290
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 132/246 (53%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRNFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKMVRR---DQPAVAVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|158334916|ref|YP_001516088.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017]
gi|189028799|sp|B0CC89.1|RSMA_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|158305157|gb|ABW26774.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017]
Length = 269
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 135/260 (51%), Gaps = 20/260 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + Q+ AAA +Q D +LEIGPG G LT LL +V+++E D+
Sbjct: 4 PRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQAQSVVSVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R F + +L+ DF+ + + + KVVANIP+NI++ ++
Sbjct: 64 LCKSLRHTFNDQENFTLLELDFLNLDVAAELTEPLPN--------KVVANIPYNITSPIL 115
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
+LL P ++ VVLL+Q+E A RLV EP + + +++ + ++ E V
Sbjct: 116 SKLLGRIDAPAQPVYETVVLLIQKEVADRLVAEPGSKI--FNGLSVRSQYLADCELICPV 173
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
P + F P PKV++AVV + YP + S ++ F+ +RKMLR +L+ L
Sbjct: 174 PASAFKPAPKVESAVVRLTPR---PYPQPVQNPQWLSTLLKVGFSSRRKMLRNNLKSLVD 230
Query: 348 SLEIEKALGDVGLPATAAAD 367
++ + L + + A A+
Sbjct: 231 RDQLSECLNTLNISLQARAE 250
>gi|354807516|ref|ZP_09040981.1| dimethyladenosine transferase [Lactobacillus curvatus CRL 705]
gi|354513970|gb|EHE85952.1| dimethyladenosine transferase [Lactobacillus curvatus CRL 705]
Length = 297
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 12/244 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T K L G +KSLGQ+++ N I Q+ A + + D V+EIGPG GSLT +
Sbjct: 10 TRKILKRYGFKFKKSLGQNFLTNIAILKQIVEAGDITKDDDVIEIGPGIGSLTEQIARKA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
VL+ E D+ ++ ++++ + +L +D ++ +++ + F+ + + K+VA
Sbjct: 70 HQVLSFEIDERLMPVLKDTLNHYHNVTILNQDILEADLKTIIAEQFDGKHN----LKIVA 125
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T ++ LL G +VL++Q+E A R+ EP + Y ++I V +SE
Sbjct: 126 NLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAERINAEPG--SKAYGSLSIAVQLHSEV 183
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRK 340
F VP+T F PQP VD+A+V ++A P VT F +V AF +RK L
Sbjct: 184 NLAFIVPKTAFMPQPNVDSAIVELVGRKA---PLVTVDNQTLFDQLVRGAFAQRRKTLWN 240
Query: 341 SLQH 344
+LQ+
Sbjct: 241 NLQN 244
>gi|229548872|ref|ZP_04437597.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200]
gi|255971386|ref|ZP_05421972.1| dimethyladenosine transferase [Enterococcus faecalis T1]
gi|257421180|ref|ZP_05598170.1| dimethyladenosine transferase dimethyltransferase [Enterococcus
faecalis X98]
gi|312952797|ref|ZP_07771659.1| dimethyladenosine transferase [Enterococcus faecalis TX0102]
gi|422692222|ref|ZP_16750244.1| dimethyladenosine transferase [Enterococcus faecalis TX0031]
gi|422707394|ref|ZP_16765089.1| dimethyladenosine transferase [Enterococcus faecalis TX0043]
gi|422727455|ref|ZP_16783896.1| dimethyladenosine transferase [Enterococcus faecalis TX0312]
gi|229305893|gb|EEN71889.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200]
gi|255962404|gb|EET94880.1| dimethyladenosine transferase [Enterococcus faecalis T1]
gi|257163004|gb|EEU92964.1| dimethyladenosine transferase dimethyltransferase [Enterococcus
faecalis X98]
gi|310629313|gb|EFQ12596.1| dimethyladenosine transferase [Enterococcus faecalis TX0102]
gi|315153008|gb|EFT97024.1| dimethyladenosine transferase [Enterococcus faecalis TX0031]
gi|315155239|gb|EFT99255.1| dimethyladenosine transferase [Enterococcus faecalis TX0043]
gi|315157566|gb|EFU01583.1| dimethyladenosine transferase [Enterococcus faecalis TX0312]
Length = 295
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + +F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDVAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ ++AT VT+ K FF + ++F +RK L +L H
Sbjct: 199 PQPNVDSAIIKLT-RRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHF 248
>gi|423071410|ref|ZP_17060184.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
intermedius F0413]
gi|355363884|gb|EHG11619.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
intermedius F0413]
Length = 291
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 133/246 (54%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTLKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDERLIPILADTLRDFENVKIINEDILKSDLQARIKEF----TNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ +L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMRLIESGISFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPR F P P VD+A++ + D PAV +SFF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRAVFVPAPNVDSAILKMTRR---DKPAVEVEDESFFFKVSKVSFAHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|294784979|ref|ZP_06750267.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27]
gi|294486693|gb|EFG34055.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_27]
Length = 264
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 136/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYTLIMGDVLEIDLRRYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGEAEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISESLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + +P A+
Sbjct: 234 ILNQIEVPENERAE 247
>gi|309803693|ref|ZP_07697783.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
gi|309804982|ref|ZP_07699040.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
gi|309806700|ref|ZP_07700695.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
gi|312874063|ref|ZP_07734098.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
gi|325913223|ref|ZP_08175592.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
gi|308164291|gb|EFO66548.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
gi|308165742|gb|EFO67967.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
gi|308166880|gb|EFO69064.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
gi|311090403|gb|EFQ48812.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
gi|325477487|gb|EGC80630.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
Length = 295
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 142/254 (55%), Gaps = 17/254 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I +L+ S++ L++Q+E A R + S ++ Y P+ I V + ++ F+V
Sbjct: 141 ITTPIILKLMHSPVKISQLTLMMQKEVAER-ISASHKSKAYGPLTIAVKKDMDVDFAFEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
RT+F P PKVD+AVV K ++ + + F+ +V AF+ +RK L +L+ L
Sbjct: 200 KRTSFMPSPKVDSAVVVLK---PLEHKLLIEHEDLFNQIVKLAFSQRRKTLNNNLKSLIK 256
Query: 348 SLEI-EKALGDVGL 360
+ + +K L D+ L
Sbjct: 257 NKDSRQKLLNDLNL 270
>gi|401679504|ref|ZP_10811431.1| dimethyladenosine transferase [Veillonella sp. ACP1]
gi|400219438|gb|EJO50306.1| dimethyladenosine transferase [Veillonella sp. ACP1]
Length = 284
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 17/230 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA +QEG+ VLEIGPG G+LT L +GA V AIE D ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGANVTAIELDTRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ A + ++ D +K + S M F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLAQYSNVTIVHGDVLKLDVPSIM--------HHEPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E ALR+V +P T +Y +++ V +Y++P+ VP +F P
Sbjct: 136 LLESRLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYTKPDIVLDVPPKSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P V ++V+ L+ D P V K FF +V + F +RK +++
Sbjct: 194 APAVTSSVIRCVLR---DKPPVDVVDEKLFFRVVKAGFAQRRKTFANTMK 240
>gi|333902123|ref|YP_004475996.1| ribosomal RNA small subunit methyltransferase A [Pseudomonas fulva
12-X]
gi|333117388|gb|AEF23902.1| Ribosomal RNA small subunit methyltransferase A [Pseudomonas fulva
12-X]
Length = 270
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 129/239 (53%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A +EG+ +LEIGPG G+LT LLN+GA + IE D +
Sbjct: 10 RKRFGQNFLHDAGVIHRILRAIHAREGEHLLEIGPGQGALTEGLLNSGAQLDVIELDLDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +FA + ++ Q D +K F +++ +VV N+P+NIST +I
Sbjct: 70 IPILQAKFADQPRFRLNQGDALKFD--------FSSLQAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E RL ++ ++I V ++ + E+ F V F P
Sbjct: 122 HLLDNAHLIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCQVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V Q +PA + +V AFN +RK LR +L+ L + EIE A
Sbjct: 181 PPKVDSAIVRLVPHQVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKALLPASEIEAA 238
>gi|342216161|ref|ZP_08708808.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341587051|gb|EGS30451.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 287
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 137/257 (53%), Gaps = 13/257 (5%)
Query: 103 ATIKA-LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+TIK LN G K+LGQ+++++ + + V + D VLEIGPG G+LT L
Sbjct: 10 STIKEILNRHGFTMTKALGQNFLIDGNTVRGIVQGSGVTKEDRVLEIGPGIGTLTEELAL 69
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
+VLA+EKDQ + ++ E A D +++L D +K ++ F + +
Sbjct: 70 EAKSVLAVEKDQRLKPILEETMADYDNVEILFGDALKLDLKKEWEDRFGQDP-----VHI 124
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSE 281
VAN+P+ ++T ++ L + + +++Q+E A R+ T +Y + +F+ ++S+
Sbjct: 125 VANLPYYVTTPILGALFDLDLPLKSLTVMVQKEVAERMCGQE-GTKDYGALTLFIRYHSD 183
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
PE +VP + F P+PKVD+AVV +K P + K FF +V +AF+ +RK + +
Sbjct: 184 PEIIRQVPNSVFIPRPKVDSAVVHMLVKDPD--PGIQREK-FFRIVKAAFSKRRKTILNA 240
Query: 342 LQHLCTSL---EIEKAL 355
L S+ EI K L
Sbjct: 241 LSSYGFSISKAEIRKIL 257
>gi|406909010|gb|EKD49361.1| hypothetical protein ACD_63C00170G0001 [uncultured bacterium]
Length = 273
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 139/252 (55%), Gaps = 15/252 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P + LGQ+++++ + ++L A+ ++ GD ++E+GPG G LT+ +L + V A+E D+
Sbjct: 18 PIRGLGQNFLIDERVIEKLVRASNIKRGDFIVEVGPGLGVLTDAVLRRTSNVFAVEIDRG 77
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V ++ERF +LK++ D + I L + G+ KVV+N+PFNI+T VI
Sbjct: 78 FVEFLKERFGD-QKLKIVHRDVLNLDIAGLAL-------KNYGY-KVVSNLPFNIATAVI 128
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L SE++++LQ+E A R+VE ++S +++ V + EP+ F + +F+
Sbjct: 129 IFFLKNKISPSEIIVVLQKEVAERIVEKEGKSS---VLSLTVRIFGEPQKLFDINPGSFY 185
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL--QHLCTSLEIE 352
P+PKV +V+ K K D + K F + F KRK+L ++L E++
Sbjct: 186 PRPKVVCSVLKIKTKIKRDLNDLGIEK-FLEAIRLGFRFKRKLLLRNLGRDEEFDLFELK 244
Query: 353 KALGDVGLPATA 364
KA + G+ ++A
Sbjct: 245 KAFINSGIDSSA 256
>gi|357239499|ref|ZP_09126834.1| dimethyladenosine transferase [Streptococcus ictaluri 707-05]
gi|356752068|gb|EHI69198.1| dimethyladenosine transferase [Streptococcus ictaluri 707-05]
Length = 290
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 139/271 (51%), Gaps = 11/271 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L
Sbjct: 5 DYSVTRSVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++++ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQIINQDILKADLQTQIKAF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKVYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y+ + F VPRT F P P VD+A++ +++ +V FF + F +RK L
Sbjct: 179 YTTAKVAFIVPRTVFVPAPNVDSAILKM-VRRDQPLISVQDENFFFRVSKVGFVHRRKTL 237
Query: 339 RKSLQHLCTSLEIEKALGDVGLPATAAADYK 369
+L E KA + GL A AD K
Sbjct: 238 WNNLTSHFGKSEDTKAKLEKGL---ALADIK 265
>gi|337282765|ref|YP_004622236.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
15912]
gi|335370358|gb|AEH56308.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
15912]
Length = 291
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 12/266 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ ++ PAVT FFS+ ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRREK---PAVTVKDEDFFFSVSKASFVHRRK 235
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPA 362
L +L E KA + G+ A
Sbjct: 236 TLWNNLTSRFGKTEEIKAKLEAGIQA 261
>gi|257081179|ref|ZP_05575540.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol]
gi|384517983|ref|YP_005705288.1| dimethyladenosine transferase [Enterococcus faecalis 62]
gi|256989209|gb|EEU76511.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol]
gi|323480116|gb|ADX79555.1| dimethyladenosine transferase [Enterococcus faecalis 62]
Length = 295
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + +F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDVAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ ++AT VT+ K FF + ++F +RK L +L H
Sbjct: 199 PQPNVDSAIIKLT-RRATPAMTVTNEKEFFKLTKASFQLRRKTLWNNLTHF 248
>gi|414156318|ref|ZP_11412627.1| ribosomal RNA small subunit methyltransferase A [Streptococcus sp.
F0442]
gi|410872527|gb|EKS20471.1| ribosomal RNA small subunit methyltransferase A [Streptococcus sp.
F0442]
Length = 291
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 12/266 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ ++ PAVT FFS+ ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRREE---PAVTVKDEDFFFSVSKASFVHRRK 235
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPA 362
L +L E KA + G+ A
Sbjct: 236 TLWNNLTSRFGKTEEIKAKLEAGIQA 261
>gi|256960062|ref|ZP_05564233.1| dimethyladenosine transferase [Enterococcus faecalis Merz96]
gi|256950558|gb|EEU67190.1| dimethyladenosine transferase [Enterococcus faecalis Merz96]
Length = 292
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + +F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDVAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ ++AT VT+ K FF + ++F +RK L +L H
Sbjct: 199 PQPNVDSAIIKLT-RRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHF 248
>gi|401682485|ref|ZP_10814376.1| dimethyladenosine transferase [Streptococcus sp. AS14]
gi|400184136|gb|EJO18381.1| dimethyladenosine transferase [Streptococcus sp. AS14]
Length = 290
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLTQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV K FF + ++F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKM-VRRTQPAVAVQDEKFFFKVSKASFVHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|373469368|ref|ZP_09560560.1| dimethyladenosine transferase [Lachnospiraceae bacterium oral taxon
082 str. F0431]
gi|371764542|gb|EHO52939.1| dimethyladenosine transferase [Lachnospiraceae bacterium oral taxon
082 str. F0431]
Length = 294
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 130/233 (55%), Gaps = 9/233 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ A + ++E D+ +EIGPG G+LT L NA V+AIE D+++
Sbjct: 26 QKKFGQNFLIDTHVLDKICAESGLKENDLAIEIGPGIGALTQYLANAAKAVVAIEIDKNL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA--KVVANIPFNISTDV 233
+ ++ E A ++ DF+K + + + E R+ F ++VAN+P+ I+T +
Sbjct: 86 LPILDETLADYKNTSIINADFLKIDLEN---LIDECRQKYGEFENIRIVANLPYYITTPI 142
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
I +L + +++Q+E A R+ + S T +Y +++ V +YS P VP F
Sbjct: 143 IMNVLESHTHIDSITVMIQKEVADRM-QASPGTKDYGALSLAVQYYSNPYVVAFVPPNRF 201
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSSAFNGKRKMLRKSLQHL 345
P+PKV ++V+ +L D P T K F ++ + FN +RK L SL +
Sbjct: 202 IPRPKVGSSVI--RLDIYKDKPIKTVDEKLMFQIIRAGFNQRRKTLVNSLANF 252
>gi|335031952|ref|ZP_08525365.1| dimethyladenosine transferase [Streptococcus anginosus SK52 = DSM
20563]
gi|333768234|gb|EGL45433.1| dimethyladenosine transferase [Streptococcus anginosus SK52 = DSM
20563]
Length = 291
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D+ +V ++ + D + V+ ED +K ++ + + S
Sbjct: 65 AENAAEVMTFEIDERLVPILADTLRDFDNVCVVNEDILKSDLQVRIKEF----ANPSLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSSA-FNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV ++FF VS A F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVGVKDEAFFFKVSKASFTHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|29375520|ref|NP_814674.1| dimethyladenosine transferase [Enterococcus faecalis V583]
gi|227517856|ref|ZP_03947905.1| dimethyladenosine transferase [Enterococcus faecalis TX0104]
gi|227555047|ref|ZP_03985094.1| dimethyladenosine transferase [Enterococcus faecalis HH22]
gi|255974004|ref|ZP_05424590.1| dimethyladenosine transferase [Enterococcus faecalis T2]
gi|256617805|ref|ZP_05474651.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200]
gi|256761690|ref|ZP_05502270.1| dimethyladenosine transferase [Enterococcus faecalis T3]
gi|256957208|ref|ZP_05561379.1| dimethyladenosine transferase [Enterococcus faecalis DS5]
gi|257077820|ref|ZP_05572181.1| dimethyladenosine transferase [Enterococcus faecalis JH1]
gi|257083847|ref|ZP_05578208.1| dimethyladenosine transferase [Enterococcus faecalis Fly1]
gi|257086272|ref|ZP_05580633.1| dimethyladenosine transferase [Enterococcus faecalis D6]
gi|257089346|ref|ZP_05583707.1| dimethyladenosine transferase [Enterococcus faecalis CH188]
gi|257415498|ref|ZP_05592492.1| dimethyladenosine transferase [Enterococcus faecalis ARO1/DG]
gi|257418530|ref|ZP_05595524.1| dimethyladenosine transferase [Enterococcus faecalis T11]
gi|293383814|ref|ZP_06629721.1| dimethyladenosine transferase [Enterococcus faecalis R712]
gi|293388710|ref|ZP_06633203.1| dimethyladenosine transferase [Enterococcus faecalis S613]
gi|294780523|ref|ZP_06745886.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1]
gi|300859868|ref|ZP_07105956.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11]
gi|307268011|ref|ZP_07549399.1| dimethyladenosine transferase [Enterococcus faecalis TX4248]
gi|307275353|ref|ZP_07556496.1| dimethyladenosine transferase [Enterococcus faecalis TX2134]
gi|307278369|ref|ZP_07559444.1| dimethyladenosine transferase [Enterococcus faecalis TX0860]
gi|307286744|ref|ZP_07566830.1| dimethyladenosine transferase [Enterococcus faecalis TX0109]
gi|312901521|ref|ZP_07760795.1| dimethyladenosine transferase [Enterococcus faecalis TX0470]
gi|312904496|ref|ZP_07763655.1| dimethyladenosine transferase [Enterococcus faecalis TX0635]
gi|312906970|ref|ZP_07765966.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512]
gi|312978773|ref|ZP_07790500.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516]
gi|384512627|ref|YP_005707720.1| dimethyladenosine transferase [Enterococcus faecalis OG1RF]
gi|397699326|ref|YP_006537114.1| dimethyladenosine transferase [Enterococcus faecalis D32]
gi|422689708|ref|ZP_16747812.1| dimethyladenosine transferase [Enterococcus faecalis TX0630]
gi|422694536|ref|ZP_16752527.1| dimethyladenosine transferase [Enterococcus faecalis TX4244]
gi|422698022|ref|ZP_16755946.1| dimethyladenosine transferase [Enterococcus faecalis TX1346]
gi|422699494|ref|ZP_16757358.1| dimethyladenosine transferase [Enterococcus faecalis TX1342]
gi|422703372|ref|ZP_16761194.1| dimethyladenosine transferase [Enterococcus faecalis TX1302]
gi|422711717|ref|ZP_16768644.1| dimethyladenosine transferase [Enterococcus faecalis TX0027]
gi|422713418|ref|ZP_16770168.1| dimethyladenosine transferase [Enterococcus faecalis TX0309A]
gi|422717556|ref|ZP_16774240.1| dimethyladenosine transferase [Enterococcus faecalis TX0309B]
gi|422720299|ref|ZP_16776917.1| dimethyladenosine transferase [Enterococcus faecalis TX0017]
gi|422722865|ref|ZP_16779414.1| dimethyladenosine transferase [Enterococcus faecalis TX2137]
gi|422729923|ref|ZP_16786318.1| dimethyladenosine transferase [Enterococcus faecalis TX0012]
gi|422735257|ref|ZP_16791531.1| dimethyladenosine transferase [Enterococcus faecalis TX1341]
gi|422738315|ref|ZP_16793514.1| dimethyladenosine transferase [Enterococcus faecalis TX2141]
gi|424671062|ref|ZP_18108077.1| dimethyladenosine transferase [Enterococcus faecalis 599]
gi|424676365|ref|ZP_18113239.1| dimethyladenosine transferase [Enterococcus faecalis ERV103]
gi|424679290|ref|ZP_18116116.1| dimethyladenosine transferase [Enterococcus faecalis ERV116]
gi|424682962|ref|ZP_18119719.1| dimethyladenosine transferase [Enterococcus faecalis ERV129]
gi|424685715|ref|ZP_18122405.1| dimethyladenosine transferase [Enterococcus faecalis ERV25]
gi|424689189|ref|ZP_18125778.1| dimethyladenosine transferase [Enterococcus faecalis ERV31]
gi|424692870|ref|ZP_18129342.1| dimethyladenosine transferase [Enterococcus faecalis ERV37]
gi|424695670|ref|ZP_18132050.1| dimethyladenosine transferase [Enterococcus faecalis ERV41]
gi|424700405|ref|ZP_18136595.1| dimethyladenosine transferase [Enterococcus faecalis ERV62]
gi|424702851|ref|ZP_18138993.1| dimethyladenosine transferase [Enterococcus faecalis ERV63]
gi|424712053|ref|ZP_18144247.1| dimethyladenosine transferase [Enterococcus faecalis ERV65]
gi|424717379|ref|ZP_18146672.1| dimethyladenosine transferase [Enterococcus faecalis ERV68]
gi|424719604|ref|ZP_18148748.1| dimethyladenosine transferase [Enterococcus faecalis ERV72]
gi|424723383|ref|ZP_18152365.1| dimethyladenosine transferase [Enterococcus faecalis ERV73]
gi|424726919|ref|ZP_18155567.1| dimethyladenosine transferase [Enterococcus faecalis ERV81]
gi|424735025|ref|ZP_18163502.1| dimethyladenosine transferase [Enterococcus faecalis ERV85]
gi|424748481|ref|ZP_18176626.1| dimethyladenosine transferase [Enterococcus faecalis ERV93]
gi|424757243|ref|ZP_18184997.1| dimethyladenosine transferase [Enterococcus faecalis R508]
gi|428766442|ref|YP_007152553.1| dimethyladenosine transferase [Enterococcus faecalis str.
Symbioflor 1]
gi|430358814|ref|ZP_19425574.1| dimethyladenosine transferase [Enterococcus faecalis OG1X]
gi|430367967|ref|ZP_19427949.1| dimethyladenosine transferase [Enterococcus faecalis M7]
gi|33516925|sp|Q837A7.1|RSMA_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|29342980|gb|AAO80744.1| dimethyladenosine transferase [Enterococcus faecalis V583]
gi|227074699|gb|EEI12662.1| dimethyladenosine transferase [Enterococcus faecalis TX0104]
gi|227175834|gb|EEI56806.1| dimethyladenosine transferase [Enterococcus faecalis HH22]
gi|255966876|gb|EET97498.1| dimethyladenosine transferase [Enterococcus faecalis T2]
gi|256597332|gb|EEU16508.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200]
gi|256682941|gb|EEU22636.1| dimethyladenosine transferase [Enterococcus faecalis T3]
gi|256947704|gb|EEU64336.1| dimethyladenosine transferase [Enterococcus faecalis DS5]
gi|256985850|gb|EEU73152.1| dimethyladenosine transferase [Enterococcus faecalis JH1]
gi|256991877|gb|EEU79179.1| dimethyladenosine transferase [Enterococcus faecalis Fly1]
gi|256994302|gb|EEU81604.1| dimethyladenosine transferase [Enterococcus faecalis D6]
gi|256998158|gb|EEU84678.1| dimethyladenosine transferase [Enterococcus faecalis CH188]
gi|257157326|gb|EEU87286.1| dimethyladenosine transferase [Enterococcus faecalis ARO1/DG]
gi|257160358|gb|EEU90318.1| dimethyladenosine transferase [Enterococcus faecalis T11]
gi|291078890|gb|EFE16254.1| dimethyladenosine transferase [Enterococcus faecalis R712]
gi|291081867|gb|EFE18830.1| dimethyladenosine transferase [Enterococcus faecalis S613]
gi|294452350|gb|EFG20789.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1]
gi|300850686|gb|EFK78435.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11]
gi|306502222|gb|EFM71506.1| dimethyladenosine transferase [Enterococcus faecalis TX0109]
gi|306504875|gb|EFM74070.1| dimethyladenosine transferase [Enterococcus faecalis TX0860]
gi|306507987|gb|EFM77114.1| dimethyladenosine transferase [Enterococcus faecalis TX2134]
gi|306515652|gb|EFM84179.1| dimethyladenosine transferase [Enterococcus faecalis TX4248]
gi|310626955|gb|EFQ10238.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512]
gi|310632194|gb|EFQ15477.1| dimethyladenosine transferase [Enterococcus faecalis TX0635]
gi|311288480|gb|EFQ67036.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516]
gi|311291421|gb|EFQ69977.1| dimethyladenosine transferase [Enterococcus faecalis TX0470]
gi|315027121|gb|EFT39053.1| dimethyladenosine transferase [Enterococcus faecalis TX2137]
gi|315032435|gb|EFT44367.1| dimethyladenosine transferase [Enterococcus faecalis TX0017]
gi|315034331|gb|EFT46263.1| dimethyladenosine transferase [Enterococcus faecalis TX0027]
gi|315145777|gb|EFT89793.1| dimethyladenosine transferase [Enterococcus faecalis TX2141]
gi|315148093|gb|EFT92109.1| dimethyladenosine transferase [Enterococcus faecalis TX4244]
gi|315149696|gb|EFT93712.1| dimethyladenosine transferase [Enterococcus faecalis TX0012]
gi|315165204|gb|EFU09221.1| dimethyladenosine transferase [Enterococcus faecalis TX1302]
gi|315167928|gb|EFU11945.1| dimethyladenosine transferase [Enterococcus faecalis TX1341]
gi|315172038|gb|EFU16055.1| dimethyladenosine transferase [Enterococcus faecalis TX1342]
gi|315173444|gb|EFU17461.1| dimethyladenosine transferase [Enterococcus faecalis TX1346]
gi|315574151|gb|EFU86342.1| dimethyladenosine transferase [Enterococcus faecalis TX0309B]
gi|315577282|gb|EFU89473.1| dimethyladenosine transferase [Enterococcus faecalis TX0630]
gi|315581706|gb|EFU93897.1| dimethyladenosine transferase [Enterococcus faecalis TX0309A]
gi|327534516|gb|AEA93350.1| dimethyladenosine transferase [Enterococcus faecalis OG1RF]
gi|397335965|gb|AFO43637.1| dimethyladenosine transferase [Enterococcus faecalis D32]
gi|402357019|gb|EJU91735.1| dimethyladenosine transferase [Enterococcus faecalis ERV103]
gi|402357324|gb|EJU92036.1| dimethyladenosine transferase [Enterococcus faecalis ERV116]
gi|402359622|gb|EJU94247.1| dimethyladenosine transferase [Enterococcus faecalis 599]
gi|402366155|gb|EJV00553.1| dimethyladenosine transferase [Enterococcus faecalis ERV129]
gi|402369125|gb|EJV03416.1| dimethyladenosine transferase [Enterococcus faecalis ERV31]
gi|402369513|gb|EJV03790.1| dimethyladenosine transferase [Enterococcus faecalis ERV25]
gi|402373801|gb|EJV07857.1| dimethyladenosine transferase [Enterococcus faecalis ERV62]
gi|402376596|gb|EJV10531.1| dimethyladenosine transferase [Enterococcus faecalis ERV37]
gi|402379522|gb|EJV13320.1| dimethyladenosine transferase [Enterococcus faecalis ERV41]
gi|402381837|gb|EJV15531.1| dimethyladenosine transferase [Enterococcus faecalis ERV65]
gi|402385628|gb|EJV19161.1| dimethyladenosine transferase [Enterococcus faecalis ERV68]
gi|402386110|gb|EJV19622.1| dimethyladenosine transferase [Enterococcus faecalis ERV63]
gi|402396172|gb|EJV29245.1| dimethyladenosine transferase [Enterococcus faecalis ERV72]
gi|402398260|gb|EJV31217.1| dimethyladenosine transferase [Enterococcus faecalis ERV81]
gi|402398558|gb|EJV31496.1| dimethyladenosine transferase [Enterococcus faecalis ERV73]
gi|402405182|gb|EJV37782.1| dimethyladenosine transferase [Enterococcus faecalis ERV85]
gi|402407475|gb|EJV40004.1| dimethyladenosine transferase [Enterococcus faecalis R508]
gi|402408403|gb|EJV40874.1| dimethyladenosine transferase [Enterococcus faecalis ERV93]
gi|427184615|emb|CCO71839.1| dimethyladenosine transferase [Enterococcus faecalis str.
Symbioflor 1]
gi|429513639|gb|ELA03218.1| dimethyladenosine transferase [Enterococcus faecalis OG1X]
gi|429516472|gb|ELA05962.1| dimethyladenosine transferase [Enterococcus faecalis M7]
Length = 295
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + +F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDVAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ ++AT VT+ K FF + ++F +RK L +L H
Sbjct: 199 PQPNVDSAIIKLT-RRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHF 248
>gi|392428035|ref|YP_006469046.1| dimethyladenosine transferase [Streptococcus intermedius JTH08]
gi|419777166|ref|ZP_14303084.1| dimethyladenosine transferase [Streptococcus intermedius SK54]
gi|383845377|gb|EID82781.1| dimethyladenosine transferase [Streptococcus intermedius SK54]
gi|391757181|dbj|BAM22798.1| dimethyladenosine transferase [Streptococcus intermedius JTH08]
Length = 291
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 133/246 (54%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDERLIPILADTLRDFENVKIINEDILKSDLQARIKEF----TNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ +L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMRLIESGISFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPR F P P VD+A++ + D PAV +SFF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRGVFVPAPNVDSAILKMTRR---DKPAVEVEDESFFFKVSKVSFTHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|229546781|ref|ZP_04435506.1| dimethyladenosine transferase [Enterococcus faecalis TX1322]
gi|256854221|ref|ZP_05559585.1| dimethyladenosine transferase [Enterococcus faecalis T8]
gi|307290952|ref|ZP_07570842.1| dimethyladenosine transferase [Enterococcus faecalis TX0411]
gi|422685513|ref|ZP_16743729.1| dimethyladenosine transferase [Enterococcus faecalis TX4000]
gi|229308130|gb|EEN74117.1| dimethyladenosine transferase [Enterococcus faecalis TX1322]
gi|256709781|gb|EEU24825.1| dimethyladenosine transferase [Enterococcus faecalis T8]
gi|306498022|gb|EFM67549.1| dimethyladenosine transferase [Enterococcus faecalis TX0411]
gi|315029806|gb|EFT41738.1| dimethyladenosine transferase [Enterococcus faecalis TX4000]
Length = 295
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + +F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDVAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ + AT VT+ K FF + ++F +RK L +L H
Sbjct: 199 PQPNVDSAIIKLT-RHATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHF 248
>gi|336431714|ref|ZP_08611556.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 2_1_58FAA]
gi|336019733|gb|EGN49455.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 291
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 140/262 (53%), Gaps = 15/262 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI L +K GQ++++++ + D++ +A + + D VLEIGPG G++T L A
Sbjct: 12 TIAVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDFVLEIGPGIGTMTQYLACAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D+ ++ ++ + D ++V+ ED +K I ++++ KVVA
Sbjct: 72 GKVAAVEIDKALIPILEDTLDGYDNVQVINEDVLKVDIAE-----LAKQENEGKPIKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y++P
Sbjct: 127 NLPYYITTPIIMGLFENHVPMKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAKP 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKS 341
VP F P+PKV +AV+ +L + + P V K F ++ ++FN +RK L
Sbjct: 185 YIVANVPPNCFMPRPKVGSAVI--RLDRYEEPPVQVKDEKLMFRIIRASFNQRRKTLANG 242
Query: 342 LQHL----CTSLEIEKALGDVG 359
L++ T +IE A+G +G
Sbjct: 243 LKNSPELDFTKEQIEAAIGHLG 264
>gi|422853380|ref|ZP_16900044.1| dimethyladenosine transferase [Streptococcus sanguinis SK160]
gi|325697392|gb|EGD39278.1| dimethyladenosine transferase [Streptococcus sanguinis SK160]
Length = 290
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 130/246 (52%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLTQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVAVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|374321382|ref|YP_005074511.1| dimethyladenosine transferase [Paenibacillus terrae HPL-003]
gi|357200391|gb|AET58288.1| dimethyladenosine transferase [Paenibacillus terrae HPL-003]
Length = 294
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 131/230 (56%), Gaps = 10/230 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ +A + E LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILNKIVNSAGLDETKGALEIGPGIGALTEKLAQSAKVVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ E A + +KV D +K +R S F +G +K VVAN+P+ ++T +
Sbjct: 85 LPILEEVLAPYEHVKVRHGDVLKLDLREVFASDF------AGVSKVSVVANLPYYVTTPI 138
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+ +LL +V+++Q+E A R+ S T +Y ++I V +YSEPE VP T F
Sbjct: 139 LMRLLEDKLPLENIVVMIQKEVAERMA-ASPGTKDYGSLSIAVQYYSEPELVCIVPNTVF 197
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
PQP V++AV+ ++++ V + FF +V ++F +RK + +L+
Sbjct: 198 IPQPNVESAVIRLRVREVPPV-EVVDEQHFFEVVQASFAQRRKTISNNLK 246
>gi|323350567|ref|ZP_08086229.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66]
gi|322123249|gb|EFX94934.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66]
Length = 290
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 131/246 (53%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVEVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|22298201|ref|NP_681448.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1]
gi|27151563|sp|P59157.1|RSMA_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|22294380|dbj|BAC08210.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1]
Length = 265
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 138/257 (53%), Gaps = 21/257 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I Q+ AAA + GD VLEIGPG G+LT LL +GA V+A+E D+ +
Sbjct: 5 RKRFGQHWLRSEAILAQIIAAAELHPGDRVLEIGPGRGALTRPLLVSGAEVVAVELDRDL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
G +R +F S ++ ++++ D ++ + + G KVVANIP+NI+ ++
Sbjct: 65 CGQLRRQFDS-ERFQLIEGDILRLDL------------APLGCNKVVANIPYNITGPLLG 111
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
LL P F ++LL+Q+E RL+ S + Y +++ V F + E VP
Sbjct: 112 HLLGSIARPRRPAFERLILLVQKEIGDRLMA-SPGSKAYGALSVRVQFLATCEKVCAVPP 170
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
F P PKVD+ VV L+ P V S + +++ F +RKML +L+ L +
Sbjct: 171 RAFQPPPKVDSVVVC--LRPHRTLPRVGSPQWLETLLKQGFATRRKMLANALKSLVEPEQ 228
Query: 351 IEKALGDVGLPATAAAD 367
+ +AL +G A + A+
Sbjct: 229 VRQALLQLGRDANSRAE 245
>gi|333397617|ref|ZP_08479430.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc gelidum KCTC 3527]
gi|406599478|ref|YP_006744824.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Leuconostoc
gelidum JB7]
gi|406371013|gb|AFS39938.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc gelidum JB7]
Length = 295
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 7/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN+ G +K GQ+++ + ++ + A + D V+EIGPG GSLT + A VL
Sbjct: 17 LNAYGLHAKKKFGQNFLTDLDVLHGIVDTADITNEDYVIEIGPGIGSLTEQIARAAKKVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
AIE D MV ++ E D +KV+ D ++ ++R + F + KVVAN+P+
Sbjct: 77 AIEIDTQMVKVLGETLKDYDNVKVIAGDILEMNLRQIITEEF----GENAHVKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL + T Y + + + +++ + +
Sbjct: 133 YITTPILMQLLRTNITWDNIVVMMQREVADRL-NADVGTKAYGVLTLTIQYFANAQLAIE 191
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
VP T F P PKV++AVV KL V + F ++ +F+ +RK L ++
Sbjct: 192 VPATAFNPAPKVESAVV--KLTPLVPQVIVDQPERLFGVIKGSFSHRRKSLWNNM 244
>gi|19703632|ref|NP_603194.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|27151573|sp|Q8R6B1.1|RSMA_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|19713742|gb|AAL94493.1| Dimethyladenosine transferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 264
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 136/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ + +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNIDDNDEILEIGPGQGALTSLLVERVKKITCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ ED ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYTLVMEDVLEVDLRRYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGESEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + + A+
Sbjct: 234 ILNQIEISENERAE 247
>gi|303231892|ref|ZP_07318601.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
gi|429760016|ref|ZP_19292508.1| dimethyladenosine transferase [Veillonella atypica KON]
gi|302513421|gb|EFL55454.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
gi|429178728|gb|EKY20000.1| dimethyladenosine transferase [Veillonella atypica KON]
Length = 284
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 17/230 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA +QEG+ VLEIGPG G+LT L +GA V AIE D ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGANVTAIELDTRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ A + ++ D +K + S M F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLAQYSNVTIVHGDVLKLDVPSIM--------HHEPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E ALR+V +P T +Y +++ V +Y++P+ VP +F P
Sbjct: 136 LLESRLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYTKPDIVLDVPPKSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P V ++V+ L+ D P V K FF +V + F +RK +++
Sbjct: 194 APAVTSSVIRCVLR---DKPPVDVIDEKLFFRVVKAGFAQRRKTFANTMK 240
>gi|241888685|ref|ZP_04775992.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379]
gi|241864708|gb|EER69083.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379]
Length = 286
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 20/261 (7%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ++++++ I +++ A V V+EIGPG GSLT L
Sbjct: 8 TFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNGNVGVIEIGPGIGSLTEALAKKA 67
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V++ E D ++ ++ E A ++++ D +K + + + S VVA
Sbjct: 68 KKVISFEIDGRLLPILSETLADYPNVEIINNDILKVDVD----KIIAEKMSDCEKIMVVA 123
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T ++ L+ + V+++Q+E A RL + T +Y + I +N+Y+ E
Sbjct: 124 NLPYYITTPILTHLIENTEKIDGYVVMMQKEVANRL-NAKVGTKDYNSLTILLNYYTNVE 182
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML----- 338
Y F VP+ F P P V++AVV K+ ++ + FF V S F +RK L
Sbjct: 183 YLFTVPKKVFVPAPNVESAVVKIMTKETREFE---TDAKFFKFVRSCFVQRRKTLLNNLI 239
Query: 339 -------RKSLQHLCTSLEIE 352
++ LQ+ C +IE
Sbjct: 240 SSYGKDKKQDLQNACVDSDIE 260
>gi|154505613|ref|ZP_02042351.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149]
gi|153794052|gb|EDN76472.1| putative dimethyladenosine transferase [Ruminococcus gnavus ATCC
29149]
Length = 307
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 142/266 (53%), Gaps = 15/266 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI L +K GQ++++++ + D++ +A + + D VLEIGPG G++T L A
Sbjct: 28 TIAVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDFVLEIGPGIGTMTQYLACAA 87
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D+ ++ ++ + D ++V+ ED +K I ++++ KVVA
Sbjct: 88 GKVAAVEIDKALIPILEDTLDGYDNVQVINEDVLKVDIAE-----LAKQENEGKPIKVVA 142
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y++P
Sbjct: 143 NLPYYITTPIIMGLFENHVPMKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAKP 200
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKS 341
VP F P+PKV +AV+ +L + + P V K F ++ ++FN +RK L
Sbjct: 201 YIVANVPPNCFMPRPKVGSAVI--RLDRYEEPPVQVKDEKLMFRIIRASFNQRRKTLANG 258
Query: 342 LQHL----CTSLEIEKALGDVGLPAT 363
L++ T +IE A+G +G A+
Sbjct: 259 LKNSPELDFTKEQIEAAIGHLGRGAS 284
>gi|417917918|ref|ZP_12561475.1| dimethyladenosine transferase [Streptococcus parasanguinis SK236]
gi|342829739|gb|EGU64087.1| dimethyladenosine transferase [Streptococcus parasanguinis SK236]
Length = 291
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 12/266 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ ++ PAVT FFS+ ++F +RK
Sbjct: 179 YMTTKVAFIVPRTVFVPAPNVDSAILKMIRREE---PAVTVKDEDFFFSVSKASFVHRRK 235
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPA 362
L +L E KA + G+ A
Sbjct: 236 TLWNNLTSRFGKTEEIKAKLEAGIQA 261
>gi|424786979|ref|ZP_18213750.1| dimethyladenosine transferase [Streptococcus intermedius BA1]
gi|422114230|gb|EKU17937.1| dimethyladenosine transferase [Streptococcus intermedius BA1]
Length = 291
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 132/246 (53%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDERLIPILADTLRDFENVKIINEDILKSDLQARIKEF----TNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGISFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPR F P P VD+A++ + D PAV +SFF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRGVFVPAPNVDSAILKMTRR---DKPAVEVEDESFFFKVSKVSFTHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|359457348|ref|ZP_09245911.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acaryochloris sp. CCMEE 5410]
Length = 269
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 135/260 (51%), Gaps = 20/260 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + Q+ AAA +Q D +LEIGPG G LT LL +V+++E D+
Sbjct: 4 PRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQAQSVVSVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R F + +L+ DF+ + + + KVVANIP+NI++ ++
Sbjct: 64 LCKSLRHTFNDQENFTLLELDFLNLDVAAELAEPLPN--------KVVANIPYNITSPIL 115
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
+LL P ++ VVLL+Q+E A RLV EP + + +++ + ++ E V
Sbjct: 116 SKLLGRIDAPAQPVYETVVLLIQKEVADRLVAEPGSKI--FNGLSVRSQYLADCELICPV 173
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
P + F P PKV++AVV + YP + S ++ F+ +RKMLR +L+ L
Sbjct: 174 PASAFKPAPKVESAVVRLTPRL---YPQPAQNPQWLSTLLKVGFSSRRKMLRNNLKSLVD 230
Query: 348 SLEIEKALGDVGLPATAAAD 367
++ + L + + A A+
Sbjct: 231 RDQLSECLNTLNISLQARAE 250
>gi|317059008|ref|ZP_07923493.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R]
gi|313684684|gb|EFS21519.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_5R]
Length = 271
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 137/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYML-NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ +EI ++ + V D +LEIGPG G+LT +LL +VL IE D+
Sbjct: 6 KKKYGQNFLTRQTEILAKIMEVSEVNSEDCILEIGPGEGALTELLLQEAKSVLNIEIDED 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +++++F +I++ +++ D ++ + +M G KVVANIP+ I++ +I
Sbjct: 66 LKPILQKKFGNIEKYRLVMGDVLEVNFAEYM---------QEG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
++++ + L++Q+E R+ + + E + + V ++++PEY F +P+ F
Sbjct: 116 QKIIENRSLIQAAFLMVQKEVGERIC--AKKGKERSALTLSVEYFAKPEYLFTIPKEYFT 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-CTSLEIEK 353
P PKVD+A + ++K+ + FF V + F KRK L + L T EI++
Sbjct: 174 PIPKVDSAFIGIRMKKEEEIAKQAPETLFFKYVKAGFFNKRKNLANNFLALGFTKAEIKE 233
Query: 354 ALGDVGLPATAAAD 367
L +G+ T A+
Sbjct: 234 KLAILGISETERAE 247
>gi|42518291|ref|NP_964221.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533]
gi|385825157|ref|YP_005861499.1| dimethyladenosine transferase [Lactobacillus johnsonii DPC 6026]
gi|62900557|sp|Q74LI0.1|RSMA_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|41582575|gb|AAS08187.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533]
gi|329666601|gb|AEB92549.1| dimethyladenosine transferase [Lactobacillus johnsonii DPC 6026]
Length = 296
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 132/253 (52%), Gaps = 15/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V +V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
T+F P+PKVD+AVV L + P + F +V F +RK L +L+ L
Sbjct: 200 KSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCFAQRRKTLANNLKTLIKD 257
Query: 349 L-EIEKALGDVGL 360
E EK + D+GL
Sbjct: 258 KDEREKLINDLGL 270
>gi|227509274|ref|ZP_03939323.1| dimethyladenosine transferase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227512287|ref|ZP_03942336.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577]
gi|227084462|gb|EEI19774.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577]
gi|227191272|gb|EEI71339.1| dimethyladenosine transferase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 301
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 132/252 (52%), Gaps = 11/252 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + + AA + + D V+EIGPG G LT L A VLA E D+ +
Sbjct: 30 KKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQLAKAANQVLAFEIDEKL 89
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + + ++++ +D +K ++ + F K KVVAN+P+ I+T ++
Sbjct: 90 LPVLDETLSPYNNIEIINQDILKANLPEVVAKRFRTDKP----LKVVANLPYYITTPIVM 145
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F +V+++Q+E A RL + T Y +++ V ++ + F VP+T F P
Sbjct: 146 DLLANPVKFESIVVMMQKEVAERL-DAKPGTKPYGSLSVIVQQQNDVDISFVVPKTAFIP 204
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-----QHLCTSLE 350
QPKVD+A+V K D K F V F +RK L +L + +
Sbjct: 205 QPKVDSAIVKLSPKMQVDKRPFDH-KKFVGFVRGCFMHQRKTLWNNLLGVFGKQESVKGQ 263
Query: 351 IEKALGDVGLPA 362
I+K L D+ + A
Sbjct: 264 IKKVLDDLSINA 275
>gi|125624667|ref|YP_001033150.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389855037|ref|YP_006357281.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124493475|emb|CAL98452.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071459|gb|ADJ60859.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 294
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 133/251 (52%), Gaps = 9/251 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSL+ LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITETADLSKEVNVIEIGPGIGSLSQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ D +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSADILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ FSE V+++Q+E A R+ S +T Y ++I V +Y E F VPRT F P
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADRIA-ASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIE 352
P VD+A++ +++ V + FF + S+F +RK L ++Q + EIE
Sbjct: 202 APNVDSAILKM-VRREEPLVEVEDEEWFFKTMHSSFVHRRKTLMNNMQAAFGKESKPEIE 260
Query: 353 KALGDVGLPAT 363
K L + T
Sbjct: 261 KLLAQAEISPT 271
>gi|398981221|ref|ZP_10689405.1| dimethyladenosine transferase [Pseudomonas sp. GM25]
gi|398133939|gb|EJM23120.1| dimethyladenosine transferase [Pseudomonas sp. GM25]
Length = 272
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + + GD +LEIGPG G+LT +LN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSISAKAGDRMLEIGPGQGALTAGILNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKQLLSNAEIEAA 238
>gi|291549844|emb|CBL26106.1| dimethyladenosine transferase [Ruminococcus torques L2-14]
Length = 304
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 143/266 (53%), Gaps = 15/266 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + D++ AAA + + D VLEIGPG G++T L A
Sbjct: 26 TIEVLQKYNFVFQKKFGQNFLIDTHVLDKIIAAAEITKDDFVLEIGPGIGTMTQYLACAA 85
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + + D +V+ D +K I + ++ KVVA
Sbjct: 86 RKVVAVEIDKALIPILEDTLSDYDNARVINNDVLKVDI-----AKLAEEENGGKPIKVVA 140
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y++P
Sbjct: 141 NLPYYITTPIIMGLFENHVPIKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAKP 198
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKS 341
VP F P+PKV +AV+ +L++ + P V K F ++ ++FN +RK L
Sbjct: 199 YIVANVPPNCFMPRPKVGSAVI--RLERYEEPPVKVKDEKLMFRIIRASFNQRRKTLANG 256
Query: 342 LQHLC----TSLEIEKALGDVGLPAT 363
L++ T EIE A+ +G A+
Sbjct: 257 LKNSAELDYTKEEIEAAIEALGRGAS 282
>gi|153815218|ref|ZP_01967886.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756]
gi|317502323|ref|ZP_07960492.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089927|ref|ZP_08338819.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336438636|ref|ZP_08618266.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145847477|gb|EDK24395.1| dimethyladenosine transferase [Ruminococcus torques ATCC 27756]
gi|316896279|gb|EFV18381.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330403159|gb|EGG82720.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336018607|gb|EGN48345.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 292
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 144/270 (53%), Gaps = 15/270 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI L +K GQ++++++ + D++ AA + + D+VLEIGPG G++T L A
Sbjct: 12 TIAVLQKYNFIFQKKFGQNFLIDTHVLDKIIRAAEIGKDDLVLEIGPGIGTMTQYLSCAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + D ++V+ ED +K IR + E R KVVA
Sbjct: 72 GKVIAVEIDRALIPILEDTLDGYDNVRVINEDVLKVDIRKLVEEENEGRP-----IKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y++P
Sbjct: 127 NLPYYITTPIIMGLFENHVPIKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAKP 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKS 341
VP F P+PKV +AV+ +L++ P V K F ++ ++FN +RK L
Sbjct: 185 YIVANVPPNCFMPRPKVGSAVI--RLERHEHPPVEVRDEKLMFRVIRASFNQRRKTLANG 242
Query: 342 LQHL----CTSLEIEKALGDVGLPATAAAD 367
L++ + EIE A+ +G A+ +
Sbjct: 243 LKNSPEIDFSKEEIEGAIEKLGKGASVRGE 272
>gi|304405864|ref|ZP_07387522.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
gi|304345107|gb|EFM10943.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
Length = 303
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 130/231 (56%), Gaps = 14/231 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AAA + LEIGPG G+LT L + V A+E D +
Sbjct: 33 KKSLGQNFLIDQNILHKIVAAAELDGTKGALEIGPGIGALTQHLARSAGRVTAVEIDNRL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSSGFAKVVANIPFNISTDVI 234
+ ++R+ A ++V+ D +K ++ LF ER + SG + VVAN+P+ ++T ++
Sbjct: 93 IPILRDTLAGEANVEVVHADVLKLNLH----ELFAERFEGLSGIS-VVANLPYYVTTPIL 147
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+LL +V+++Q+E A R+ +P + EY +++ V +Y EP VP T F
Sbjct: 148 MKLLEERLPLEHIVVMIQKEVADRMAAKPGGK--EYGSLSVAVQYYCEPSIVCTVPHTVF 205
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSL 342
PQP VD+AV+ L++ PAV + FF V ++F +RK L ++
Sbjct: 206 IPQPNVDSAVIKLSLREK---PAVETRDEAHFFRTVQASFAQRRKTLMNNM 253
>gi|237804701|ref|YP_002888855.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273001|emb|CAX09913.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
Length = 277
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 150/269 (55%), Gaps = 19/269 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFE-------ESLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYSS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
+RK+L SL++L ++ + L +G
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGF 253
>gi|422730950|ref|ZP_16787331.1| dimethyladenosine transferase [Enterococcus faecalis TX0645]
gi|315163005|gb|EFU07022.1| dimethyladenosine transferase [Enterococcus faecalis TX0645]
Length = 295
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + +F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDVAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ + AT VT+ K FF + ++F +RK L +L H
Sbjct: 199 PQPNVDSAIIKLTCR-ATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHF 248
>gi|422880875|ref|ZP_16927331.1| dimethyladenosine transferase [Streptococcus sanguinis SK355]
gi|332365863|gb|EGJ43620.1| dimethyladenosine transferase [Streptococcus sanguinis SK355]
Length = 290
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 130/246 (52%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVAVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|227522373|ref|ZP_03952422.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290]
gi|227090431|gb|EEI25743.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290]
Length = 301
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 132/252 (52%), Gaps = 11/252 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + + AA + + D V+EIGPG G LT L A VLA E D+ +
Sbjct: 30 KKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQLAKAANQVLAFEIDEKL 89
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + + ++++ +D +K ++ + F K KVVAN+P+ I+T ++
Sbjct: 90 LPVLDETLSPYNNIEIINQDILKANLPEVVAKRFRTDKP----LKVVANLPYYITTPIVM 145
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F +V+++Q+E A RL + T Y +++ V ++ + F VP+T F P
Sbjct: 146 DLLANPVKFESIVVMMQKEVAERL-DAKPGTKPYGSLSVIVQQQNDVDISFVVPKTAFIP 204
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-----QHLCTSLE 350
QPKVD+A+V K D K F V F +RK L +L + +
Sbjct: 205 QPKVDSAIVKLSPKMQVDKRPFDH-KKFVGFVRGCFMHQRKTLWNNLLGVFGKQESVKGQ 263
Query: 351 IEKALGDVGLPA 362
I+K L D+ + A
Sbjct: 264 IKKVLDDLSINA 275
>gi|15901808|ref|NP_346412.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4]
gi|14973492|gb|AAK76052.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4]
Length = 279
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 13/251 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 10 KKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAQVMAFEIDHRL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D + V+ ED +K + H+ + K+ KVVAN+P+ I+T ++
Sbjct: 70 VPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPIKVVANLPYYITTPILM 125
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ G F E V+++Q+E A R+ +P+ T Y ++I V +Y + F VPRT F
Sbjct: 126 HLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYYMTAKVAFIVPRTVFV 183
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE---- 350
P P VD+A++ +++ AV FF + ++F +RK L +L E
Sbjct: 184 PAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKD 242
Query: 351 -IEKALGDVGL 360
+ KAL GL
Sbjct: 243 KLTKALDQAGL 253
>gi|319940004|ref|ZP_08014358.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
anginosus 1_2_62CV]
gi|319810718|gb|EFW07045.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
anginosus 1_2_62CV]
Length = 291
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D+ +V ++ + D + V+ ED +K ++ + + S
Sbjct: 65 AENAAEVMTFEIDERLVPILADTLRDFDNVCVVNEDILKSDLQVRIKEF----ANPSLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGNLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSSA-FNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV ++FF VS A F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPAVGVKDEAFFFKVSKASFTHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|256964244|ref|ZP_05568415.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704]
gi|307271936|ref|ZP_07553204.1| dimethyladenosine transferase [Enterococcus faecalis TX0855]
gi|256954740|gb|EEU71372.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704]
gi|306511442|gb|EFM80444.1| dimethyladenosine transferase [Enterococcus faecalis TX0855]
Length = 295
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + +F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDLAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ ++AT VT+ K FF + +F +RK L +L H
Sbjct: 199 PQPNVDSAIIKLT-RRATPAVTVTNEKEFFKLTKVSFQLRRKTLWNNLTHF 248
>gi|269797689|ref|YP_003311589.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
gi|269094318|gb|ACZ24309.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
Length = 284
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 17/230 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDKIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS + ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYNNVRIIHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E ALR+V +P T +Y +++ V +Y+EP+ VP +F P
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYTEPDIVLDVPPKSFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P V ++V+ L+ D P V K FF +V + F +RK +++
Sbjct: 194 APAVTSSVIRCVLR---DKPPVDVIDEKLFFRVVKAGFAQRRKTFSNTMK 240
>gi|434399399|ref|YP_007133403.1| Ribosomal RNA small subunit methyltransferase A [Stanieria
cyanosphaera PCC 7437]
gi|428270496|gb|AFZ36437.1| Ribosomal RNA small subunit methyltransferase A [Stanieria
cyanosphaera PCC 7437]
Length = 284
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 142/269 (52%), Gaps = 15/269 (5%)
Query: 106 KALNSKGRF-PRKSLGQHYMLNSEIN-DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
K+ S+ +F P K GQH+ L SEI +Q+ AAA + D +LEIGPGTG LT LL
Sbjct: 5 KSTQSRSQFRPNKRFGQHW-LRSEIALNQIVAAAQLTSSDRILEIGPGTGILTRRLLPLV 63
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
+++A+E D+++ + ++ D +LQ DF+K ++ L E S K+VA
Sbjct: 64 ESLVAVEIDRNLCQKLTQKLGKEDNFLLLQGDFLKL----NLTELLESFPSFQQPNKIVA 119
Query: 224 NIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
NIP+NI+ ++++LL P + +VLL+Q+E RL S T Y +++ V +
Sbjct: 120 NIPYNITGPILEKLLGKISQPATTAYQSIVLLVQQEVGERLTA-SPGTKAYGALSLRVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
+ E + VP F P PKVD+ V+ +L T + + S++ F +RKML
Sbjct: 179 LASCELIYHVPAKAFSPPPKVDSVVI--RLHPRTISEPADNPRLLDSLIKLGFANRRKML 236
Query: 339 RKSLQHLCTSLEIEKALGDVGLPATAAAD 367
R +L + ++ + L + L + + A+
Sbjct: 237 RNNLSSVIAPDDLIQLLEQLNLNSQSRAE 265
>gi|418145152|ref|ZP_12781944.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13494]
gi|353804867|gb|EHD85146.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13494]
Length = 279
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 132/251 (52%), Gaps = 13/251 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 10 KKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAQVMAFEIDHRL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D + V+ ED +K + H+ + K+ + KVVAN+P+ I+T ++
Sbjct: 70 VPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPIKVVANLPYYITTPILM 125
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ G F E V+++Q+E A R+ +P+ T Y ++I V +Y + F VPRT F
Sbjct: 126 HLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYYMTAKVAFIVPRTVFV 183
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE---- 350
P P VD+A++ +++ AV FF + ++F +RK L +L E
Sbjct: 184 PAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKD 242
Query: 351 -IEKALGDVGL 360
+ KAL GL
Sbjct: 243 KLTKALDQAGL 253
>gi|354565155|ref|ZP_08984330.1| Ribosomal RNA small subunit methyltransferase A [Fischerella sp.
JSC-11]
gi|353549114|gb|EHC18556.1| Ribosomal RNA small subunit methyltransferase A [Fischerella sp.
JSC-11]
Length = 272
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 129/235 (54%), Gaps = 14/235 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + ++ AA +++GD +LEIGPGTG LT +L +++A+E D+
Sbjct: 4 PRKVFAQHWLKSKKALAEIIQAAKLEQGDRILEIGPGTGILTRRILPLVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + + +LQ DF++ + SL E + KVVANIP+NI+ +I
Sbjct: 64 LCEHLAKELGKRENFLLLQGDFLELDVP----SLLEGYPAFQNPNKVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
+++L P +++ +VLL+Q+E A RLV +P + + + V + +E E V
Sbjct: 120 EKILGTIANPNPELYDLIVLLVQKEVAERLVAKPGSKACGA--LTVRVQYLAECELISIV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P F+P PKVD+AVV ++ PA + ++V F KRKMLR +LQ
Sbjct: 178 PAKAFYPPPKVDSAVVRLIPRKIE--PAAQDPRKLETLVKLGFAAKRKMLRNNLQ 230
>gi|308179573|ref|YP_003923701.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|308045064|gb|ADN97607.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 296
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 127/241 (52%), Gaps = 12/241 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 18 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVL 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 78 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
I+T ++ +L GD+ F +V+++Q+E A RL EP T Y + I V + E
Sbjct: 134 YITTPILMNIL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMA 190
Query: 286 FKVPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VPRT F P P VD+A+V L T P +FF +V + F +RK L +LQ
Sbjct: 191 MVVPRTVFVPSPNVDSAIVKLTALPPRTHVP--FDEAAFFKVVKAGFAHRRKNLWNNLQS 248
Query: 345 L 345
L
Sbjct: 249 L 249
>gi|328956557|ref|YP_004373943.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp.
17-4]
gi|328672881|gb|AEB28927.1| dimethyladenosine 16S ribosomal RNA transferase [Carnobacterium sp.
17-4]
Length = 297
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 128/227 (56%), Gaps = 6/227 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + + AA+ + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFIVDPNILNNIVAASNIDKNTNVIEVGPGIGALTEHLARASKEVIAFEIDNRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ D +K +++ + + + + VVAN+P+ I+T +I
Sbjct: 85 LPVLADTLSPYDNVSIVHSDVLKINLQKTLPEMIDLDEP----LVVVANLPYYITTPIIM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + +++Q+E A R+ + + Y ++I + +Y E E F VP+T F P
Sbjct: 141 HFLETPVRIDGLTIMMQKEVAERITA-APGSKAYGSLSIAIQYYMEAEVAFIVPKTVFVP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
QP VD+A++ ++AT V + KSFF++V SAF +RK L +L
Sbjct: 200 QPNVDSAIIKLT-RRATPSVTVKNEKSFFALVRSAFVQRRKTLWNNL 245
>gi|339637700|emb|CCC16666.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
pentosus IG1]
Length = 295
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 127/241 (52%), Gaps = 12/241 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 17 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGVNDNVIEIGPGIGALTEYLARAAHHVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 77 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 132
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
I+T ++ LL GD+ F +V+++Q+E A RL EP T Y + I V + E
Sbjct: 133 YITTPILMNLL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMA 189
Query: 286 FKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VPRT F P P VD+A+V L T P +FF +V + F +RK L +LQ
Sbjct: 190 MVVPRTVFVPAPNVDSAIVKLTALPPRTHVP--FDEAAFFKVVKAGFAHRRKNLWNNLQS 247
Query: 345 L 345
L
Sbjct: 248 L 248
>gi|309808503|ref|ZP_07702402.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
gi|308168331|gb|EFO70450.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
Length = 295
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 142/254 (55%), Gaps = 17/254 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VGLV-RERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V + ++ F+V
Sbjct: 141 ITTPIILKLMHSPIKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAVKKDMDVDFAFEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
RT+F P PKVD+AVV K ++ + + F+ +V AF+ +RK L +L+ L
Sbjct: 200 KRTSFMPSPKVDSAVVVLK---PLEHKLLIEHEDLFNQIVKLAFSQRRKTLNNNLKSLIK 256
Query: 348 SLEI-EKALGDVGL 360
+ +K L D+ L
Sbjct: 257 DKDARQKLLNDLNL 270
>gi|254416619|ref|ZP_05030370.1| dimethyladenosine transferase [Coleofasciculus chthonoplastes PCC
7420]
gi|196176585|gb|EDX71598.1| dimethyladenosine transferase [Coleofasciculus chthonoplastes PCC
7420]
Length = 283
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 136/248 (54%), Gaps = 14/248 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K QH++ + + +Q+ AA +Q D +LEIGPGTG LT LL +++A+E D+ +
Sbjct: 7 KQFAQHWLRSEKALNQIITAAKLQPRDRLLEIGPGTGVLTRRLLGEVESLVAVEIDRDLC 66
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ + + +LQ D + ++ H L+ F +S + KVVANIP+NI+ +++
Sbjct: 67 QRLVKSLGQNENFLLLQGDILSLNLAEH-LAAFPHFQSPN---KVVANIPYNITGPILQT 122
Query: 237 LL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
LL P+ F +VLL+Q+E A RL +P + + +++ V + ++ ++ VP
Sbjct: 123 LLGTIAQPITPAFELIVLLVQKEVAQRLCAKPG--SKAFGALSVRVQYLADCDWICDVPA 180
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
F P PKVD+AVV +L+ P+ + + ++V F KRKMLR +L+ LC +
Sbjct: 181 IAFSPPPKVDSAVV--RLRPRIVDPSADNPQQLETLVKLGFASKRKMLRNNLKSLCDRDK 238
Query: 351 IEKALGDV 358
I + L V
Sbjct: 239 INQLLEQV 246
>gi|55823689|ref|YP_142130.1| dimethyladenosine transferase [Streptococcus thermophilus CNRZ1066]
gi|386087400|ref|YP_006003274.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
thermophilus ND03]
gi|387910495|ref|YP_006340801.1| dimethyladenosine transferase [Streptococcus thermophilus
MN-ZLW-002]
gi|62900468|sp|Q5LY12.1|RSMA_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|55739674|gb|AAV63315.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus
thermophilus CNRZ1066]
gi|312279113|gb|ADQ63770.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
thermophilus ND03]
gi|387575430|gb|AFJ84136.1| dimethyladenosine transferase [Streptococcus thermophilus
MN-ZLW-002]
Length = 290
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + ++F +RK L
Sbjct: 179 YMTAKVAFAVPRTVFVPAPNVDSAILKMT-RRKQPLVEVKDEDFFFRVSKASFLHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKNKL 255
>gi|419955704|ref|ZP_14471828.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri TS44]
gi|387967509|gb|EIK51810.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri TS44]
Length = 262
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A + G+ ++EIGPG G+LT LL++GA + +E D +
Sbjct: 7 RKRFGQNFLHDAGVIHRILRAIHPKAGERLVEIGPGQGALTEGLLDSGAHLDVVELDLDL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +FA D + Q D +K F R ++V N+P+NIST +I
Sbjct: 67 IPILQSKFAGRDNFTLHQGDALKFD--------FSRLSQEPASLRIVGNLPYNISTPLIF 118
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL EP ++ ++I V ++ E+ F V F
Sbjct: 119 HLLEHAGLIRDMHFMLQKEVVERLAAEPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 176
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA + +V AFN +RK LR +L+ L + +IE A
Sbjct: 177 PAPKVDSAIVRLVPHETLPHPA-RDHRQLERVVREAFNQRRKTLRNTLKGLLDAQDIEAA 235
Query: 355 LGDVGL 360
D GL
Sbjct: 236 QVDGGL 241
>gi|116628487|ref|YP_821106.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9]
gi|122266918|sp|Q03IR2.1|RSMA_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|116101764|gb|ABJ66910.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9]
Length = 290
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + ++F +RK L
Sbjct: 179 YMTTKVAFAVPRTVFVPAPNVDSAILKMT-RRKQPLVEVKDEDFFFRVSKASFLHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKNKL 255
>gi|55821771|ref|YP_140213.1| dimethyladenosine transferase [Streptococcus thermophilus LMG
18311]
gi|62900469|sp|Q5M2L6.1|RSMA_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|55737756|gb|AAV61398.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus
thermophilus LMG 18311]
Length = 290
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + ++F +RK L
Sbjct: 179 YMTTKMAFAVPRTVFVPAPNVDSAILKMT-RRKQPLVEVKDEDFFFRVSKASFLHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKNKL 255
>gi|254555556|ref|YP_003061973.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1]
gi|300767100|ref|ZP_07077013.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|254044483|gb|ACT61276.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1]
gi|300495638|gb|EFK30793.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
Length = 296
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 17/256 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 18 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVL 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 78 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
I+T ++ +L GD+ F +V+++Q+E A RL EP T Y + I V + E
Sbjct: 134 YITTPILMNIL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMA 190
Query: 286 FKVPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VPRT F P P VD+A+V L T P +FF +V + F +RK L +LQ
Sbjct: 191 MVVPRTVFVPSPNVDSAIVKLTALPPRTHVP--FDEAAFFKVVKAGFAHRRKNLWNNLQS 248
Query: 345 LC-----TSLEIEKAL 355
L T I++AL
Sbjct: 249 LFGKQPETKTAIQQAL 264
>gi|255319639|ref|ZP_05360849.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82]
gi|262379013|ref|ZP_06072170.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164]
gi|421466159|ref|ZP_15914845.1| dimethyladenosine transferase [Acinetobacter radioresistens
WC-A-157]
gi|421855752|ref|ZP_16288127.1| ribosomal RNA small subunit methyltransferase A [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|255303323|gb|EET82530.1| dimethyladenosine transferase [Acinetobacter radioresistens SK82]
gi|262300298|gb|EEY88210.1| dimethyladenosine transferase [Acinetobacter radioresistens SH164]
gi|400203670|gb|EJO34656.1| dimethyladenosine transferase [Acinetobacter radioresistens
WC-A-157]
gi|403188761|dbj|GAB74328.1| ribosomal RNA small subunit methyltransferase A [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 270
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 18/258 (6%)
Query: 101 YHATIKALNSK--GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
YH I ALN K G RK GQ+++ + + +++ + Q GD ++EIGPG +LT
Sbjct: 2 YH--INALNPKDEGHKARKRFGQNFLHDQRVIEKIVRSVNPQPGDNIVEIGPGLAALTAP 59
Query: 159 LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218
L+ + +E D+ + + R ++L +++ D +K LF+ +
Sbjct: 60 LIAECEALTVVELDRDLAAGLPGRVPYPERLTIIESDALKYDFS----QLFKEGQP---- 111
Query: 219 AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVN 277
+ V N+P+NIST ++ LL GD ++ +LQ+E R+ EP+ T EY +++ +
Sbjct: 112 LRAVGNLPYNISTPLLFHLLEFGDKVKDMHFMLQKEVVDRITAEPN--TKEYGRLSVMIQ 169
Query: 278 FYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSSAFNGKRK 336
+Y +P Y F+VP +F P PKV +AV F+L+ D P V + K+ +VS F +RK
Sbjct: 170 YYCKPTYLFEVPPGSFNPPPKVTSAV--FRLEPYKDKPIVAQNEKALARLVSHVFTQRRK 227
Query: 337 MLRKSLQHLCTSLEIEKA 354
LR SL+ + EKA
Sbjct: 228 TLRNSLKGMLAENGFEKA 245
>gi|329768941|ref|ZP_08260368.1| dimethyladenosine transferase [Gemella sanguinis M325]
gi|328836658|gb|EGF86316.1| dimethyladenosine transferase [Gemella sanguinis M325]
Length = 286
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 20/261 (7%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ++++++ I +++ A + + V+EIGPG GSLT +
Sbjct: 8 TFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGINDKVGVIEIGPGIGSLTEAVAKRA 67
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V++ E D ++ ++ E A ++++ D +K + + E + S VVA
Sbjct: 68 KRVISFEIDGRLLPILSETLADYSNVEIINNDILKVDVD----KIIEEKMSDCEKIMVVA 123
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T ++ L+ V+++Q E A RL + T +Y + I +N+Y+ E
Sbjct: 124 NLPYYITTPILTHLIENTKRIDGYVVMMQREVANRL-NAKVGTKDYNSLTILLNYYTNVE 182
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML----- 338
Y F VP+ F P P V++AVV K ++ A FF V S F +RK L
Sbjct: 183 YLFTVPKKVFVPAPNVESAVVKIMTKDEKEFEA---DSKFFKFVRSCFVQRRKTLLNNLI 239
Query: 339 -------RKSLQHLCTSLEIE 352
++ LQ+ C EI+
Sbjct: 240 SSYGKDKKQELQNSCLDSEID 260
>gi|315644358|ref|ZP_07897498.1| dimethyladenosine transferase [Paenibacillus vortex V453]
gi|315280235|gb|EFU43527.1| dimethyladenosine transferase [Paenibacillus vortex V453]
Length = 294
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 6/228 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + E LEIGPG G+LT L TV AIE DQ +
Sbjct: 25 KKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQTAGTVTAIEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++RE + +KV D +K + LF++ VVAN+P+ ++T ++
Sbjct: 85 IPILREVLEPYENVKVHHGDVLKVDLH----ELFQQDFGGVSKVSVVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ + + +Y ++I V +YSEP+ VP T F P
Sbjct: 141 KLLEEKLPLENIVVMIQKEVAERMA-AAPGSKDYGSLSIAVQYYSEPKLVCIVPHTVFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
QP V +AV+ +++ +V FF +V ++F +RK + +L+
Sbjct: 200 QPNVASAVIRLAVREEPPV-SVEDEGFFFEVVQASFAQRRKTIANNLK 246
>gi|386345507|ref|YP_006041671.1| dimethyladenosine transferase [Streptococcus thermophilus JIM 8232]
gi|339278968|emb|CCC20716.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Streptococcus
thermophilus JIM 8232]
Length = 290
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + ++F +RK L
Sbjct: 179 YMTTKVAFAVPRTVFVPAPNVDSAILKMT-RRKQPLVEVKDEDFFFRVSKASFLHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKNKL 255
>gi|448820147|ref|YP_007413309.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
plantarum ZJ316]
gi|448273644|gb|AGE38163.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
plantarum ZJ316]
Length = 296
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 17/256 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 18 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVL 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 78 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
I+T ++ +L GD+ F +V+++Q+E A RL EP T Y + I V + E
Sbjct: 134 YITTPILMNIL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRVAAEMA 190
Query: 286 FKVPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VPRT F P P VD+A+V L T P +FF +V + F +RK L +LQ
Sbjct: 191 MVVPRTVFVPSPNVDSAIVKLTALPPRTHVP--FDEAAFFKVVKAGFAHRRKNLWNNLQS 248
Query: 345 LC-----TSLEIEKAL 355
L T I++AL
Sbjct: 249 LFGKQPETKTAIQQAL 264
>gi|422868710|ref|ZP_16915248.1| dimethyladenosine transferase [Enterococcus faecalis TX1467]
gi|329574115|gb|EGG55692.1| dimethyladenosine transferase [Enterococcus faecalis TX1467]
Length = 295
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQAFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDVAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ ++AT VT+ K FF + ++F +RK L +L H
Sbjct: 199 PQPNVDSAIIKLT-RRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHF 248
>gi|312863719|ref|ZP_07723957.1| dimethyladenosine transferase [Streptococcus vestibularis F0396]
gi|322515990|ref|ZP_08068928.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC
49124]
gi|311101255|gb|EFQ59460.1| dimethyladenosine transferase [Streptococcus vestibularis F0396]
gi|322125525|gb|EFX96866.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC
49124]
Length = 290
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D +KV+ ED +K +++ + ++ +
Sbjct: 65 AENAAEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFEEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + ++F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKMT-RRKQPLVEVKDEDFFFRVSKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKNKL 255
>gi|440539544|emb|CCP65058.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/224]
Length = 277
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 150/269 (55%), Gaps = 19/269 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFE-------ESLSQLPMDIEIADAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
+RK+L SL++L ++ + L +G
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGF 253
>gi|429334667|ref|ZP_19215321.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida CSV86]
gi|428760738|gb|EKX82998.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida CSV86]
Length = 268
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 129/240 (53%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A + G+ +LEIGPG G+LT +L +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRAINAKAGEHILEIGPGQGALTEGVLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FAS D ++ Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 VPILNQQFASRDNFRLHQGDALKFD--------FTTLGAAPRSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL ++ ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLDNAELIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA + +V AFN +RK LR +L+ L S IE A
Sbjct: 180 PPPKVDSAIVRLVPHETLPFPA-KDHRLLERIVREAFNQRRKTLRNTLKALLDSQAIEAA 238
>gi|315639886|ref|ZP_07895017.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952]
gi|315484311|gb|EFU74776.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952]
Length = 295
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 132/242 (54%), Gaps = 11/242 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AA + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTDPNILRNIVAAGDIDQDTNVIEVGPGIGALTEYLARAAHQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D ++ I H+L E+ + KVVAN+P+ I+T ++
Sbjct: 85 LPVLADTLSPYDNVSVIHQDILQARI-DHVLQ--EQFTNDGRPVKVVANLPYYITTPIMM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+++++Q+E A R+ +P T Y ++I V +Y E F VP+T F
Sbjct: 142 HFLDSKVEIAEMIVMMQKEVADRISAKPG--TKAYGSLSIAVQYYMEASVAFIVPKTVFV 199
Query: 295 PQPKVDAAV--VTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
PQP VD+A+ +T + + A D V + K+FF + +AF +RK +LQ E
Sbjct: 200 PQPNVDSAILKLTRRPQPAVD---VINEKAFFGLTKAAFLQRRKTFWNNLQSYYGKDEAT 256
Query: 353 KA 354
KA
Sbjct: 257 KA 258
>gi|15612620|ref|NP_240923.1| dimethyladenosine transferase [Bacillus halodurans C-125]
gi|27151607|sp|Q9KGK4.1|RSMA_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|10172669|dbj|BAB03776.1| dimethyladenosine transferase [Bacillus halodurans C-125]
Length = 289
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 128/232 (55%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + + A++ +EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLARQAKRVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++RE A + + V+ ED +K ++ + + FE + VVAN+P+ ++T ++
Sbjct: 83 IPVLRETLAPYENVTVINEDVLKADVKQVIATTFEEGQD----LMVVANLPYYVTTPILM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q E A R+ +P T EY ++I +Y+ E KVP+T F
Sbjct: 139 KLLEAKLPVRGIVVMIQAEVADRIAAKPG--TKEYGSLSIAAQYYATAELAVKVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+AV+ +++ P VT + F++V ++F +RK + +L H
Sbjct: 197 PQPNVDSAVLRLTIREK---PPVTVADEEWLFAIVRASFANRRKTILNNLIH 245
>gi|398844539|ref|ZP_10601601.1| dimethyladenosine transferase [Pseudomonas sp. GM84]
gi|398254476|gb|EJN39571.1| dimethyladenosine transferase [Pseudomonas sp. GM84]
Length = 266
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA D ++ Q D +K F + + KVV N+P+NIST +I
Sbjct: 70 VPILQHKFAGRDNFRLHQGDALKFD--------FNQLGVPARSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E R+ P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERMAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + YPA +V AFN +RK LR +L+ L S IE A
Sbjct: 180 PPPKVDSAIVRLVPHEVLPYPA-KDHLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEAA 238
>gi|322390323|ref|ZP_08063851.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
903]
gi|321142971|gb|EFX38421.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
903]
Length = 291
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 135/264 (51%), Gaps = 8/264 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FFS+ ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREEPAVAVKDEDFFFSVSKASFVHRRKTL 237
Query: 339 RKSLQHLCTSLEIEKALGDVGLPA 362
+L E KA + G+ A
Sbjct: 238 WNNLTSRFGKTEEIKAKLEAGIQA 261
>gi|427406216|ref|ZP_18896421.1| dimethyladenosine transferase [Selenomonas sp. F0473]
gi|425709057|gb|EKU72096.1| dimethyladenosine transferase [Selenomonas sp. F0473]
Length = 291
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 132/245 (53%), Gaps = 12/245 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T + LN+ G RK LGQ++++++ + + AA + GD VLEIGPG G+LT L
Sbjct: 10 DPAVTRRILNAFGLRARKRLGQNFLVDASVVRGIVDAAELTAGDTVLEIGPGIGTLTQGL 69
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
GA V+A+E D+ + ++ + D + V+ D +K I + + ++ F
Sbjct: 70 AETGARVVAVEVDRKLPAVLAQTLRGYDNVTVVPGDILKIDIPETL-----KLENGERF- 123
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T +I LL +V ++Q+E A+R+ P T +Y +++ V +
Sbjct: 124 KVVANLPYYITTPIIMTLLEQRLPIERLVTMVQKEVAMRMTARPG--TKDYGALSVAVQY 181
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKM 337
++ P VP F P P+V +AVV+ +++ PA K FF ++ +AF +RK
Sbjct: 182 FTAPRMVTDVPPRAFRPAPEVTSAVVSCVVRETPGALPA--DEKLFFRLIRAAFGQRRKT 239
Query: 338 LRKSL 342
L +L
Sbjct: 240 LLNAL 244
>gi|312867557|ref|ZP_07727765.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405]
gi|311096963|gb|EFQ55199.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405]
Length = 291
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 135/264 (51%), Gaps = 8/264 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLREFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FFS+ ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREEPAVAVKDEDFFFSVSKASFVHRRKTL 237
Query: 339 RKSLQHLCTSLEIEKALGDVGLPA 362
+L E KA + G+ A
Sbjct: 238 WNNLTSRFGKTEEVKAKLEAGIQA 261
>gi|420162329|ref|ZP_14669088.1| dimethyladenosine transferase [Weissella koreensis KCTC 3621]
gi|394744362|gb|EJF33316.1| dimethyladenosine transferase [Weissella koreensis KCTC 3621]
Length = 297
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 133/258 (51%), Gaps = 18/258 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + A V + D V+EIGPG G+LT L A V+
Sbjct: 18 MNQYGINTKKSLGQNFLTDLNILKNIVLAGNVTKDDNVIEIGPGIGALTEQLARAAKEVV 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D+ ++ ++ + + D +K++ +D +K + S ++ E S K+VAN+P+
Sbjct: 78 AFEIDERLISVLGDTLSPYDNIKIINQDILKVDLMS---AVQENFTDPSAPLKIVANLPY 134
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T ++ Q+L G +V+++Q+E A RL EP T EY +++ V + + F
Sbjct: 135 YITTPILMQILESGIEVDAIVVMMQKEVADRLAAEPG--TKEYGSLSLTVQYRVQARVAF 192
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL---- 342
V RT+F P P VD+A+V K ++ + + + F + F +RK L +L
Sbjct: 193 YVDRTSFIPNPNVDSAIVVLKPREPLEILP-DNEQRLFKLFKIGFAMRRKTLWNNLTTAF 251
Query: 343 -------QHLCTSLEIEK 353
L +LEI K
Sbjct: 252 GKNGGMQDKLLDALEISK 269
>gi|110834909|ref|YP_693768.1| ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
gi|122064277|sp|Q0VMV2.1|RSMA_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|110648020|emb|CAL17496.1| Ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
Length = 280
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 132/255 (51%), Gaps = 13/255 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + + D++ +Q GD ++EIGPG G+LT LL + +E D+ +
Sbjct: 7 RKRFGQHFLHDRNLVDRMIRTLGLQTGDTLVEIGPGRGALTYPLLEELPHLHVVELDRDL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L+R+ + ++L + + D ++ R+ K + +V+ N+P+NIST +I
Sbjct: 67 IALLRQE-NTPERLTIHESDALRFDFRT--------LKPADKPLRVIGNLPYNISTPLIF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL D S++ +LQ+E RL S T ++ ++I V ++ + +Y F VP F P
Sbjct: 118 HLLAQADAISDMTFMLQKEVVERLTA-SPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSP 176
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
P+VD+AVV + +PA +V+ AF +RK +R L+ ++ + +
Sbjct: 177 PPRVDSAVVRLIPHDSPPHPA-DDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFQAVG 235
Query: 356 GDVGLPAT--AAADY 368
D GL + ADY
Sbjct: 236 IDAGLRPDQLSVADY 250
>gi|419799774|ref|ZP_14325098.1| dimethyladenosine transferase [Streptococcus parasanguinis F0449]
gi|385697157|gb|EIG27604.1| dimethyladenosine transferase [Streptococcus parasanguinis F0449]
Length = 291
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 135/264 (51%), Gaps = 8/264 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FFS+ ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREEPAVAVEDEDFFFSVSKASFVHRRKTL 237
Query: 339 RKSLQHLCTSLEIEKALGDVGLPA 362
+L E KA + G+ A
Sbjct: 238 WNNLTSRFGKTEEIKAKLEAGIQA 261
>gi|443322232|ref|ZP_21051259.1| dimethyladenosine transferase [Gloeocapsa sp. PCC 73106]
gi|442788022|gb|ELR97728.1| dimethyladenosine transferase [Gloeocapsa sp. PCC 73106]
Length = 265
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 142/259 (54%), Gaps = 23/259 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I +Q+ AAA + + D VLEIGPGTG LT L+ + ++++A+E D+ +
Sbjct: 6 RKRFGQHWLKSEAILNQIIAAARLCQDDAVLEIGPGTGILTRRLVESVSSLVAVEIDRDL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+R+ + +++ D ++ + ++ KVVANIP+NI+ +++
Sbjct: 66 CIKLRKLLGDRENFSLIEADILQLDLNNY-----------PHLNKVVANIPYNITGPILE 114
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+LL P G + +VLL+Q+E A RLV +P +T + +++ + + ++ + +VP
Sbjct: 115 KLLGTITNPTGQNYQLIVLLIQKEVADRLVAQPGSKT--FGALSVRIQYLADCQLVCRVP 172
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
F P PKVD+AVV+ + +P V + K +++ F +RKMLR +L+ L
Sbjct: 173 AKAFQPPPKVDSAVVSLSPR---PFPIVANNPKHLGTILQLGFANRRKMLRNNLKSLIDG 229
Query: 349 LEIEKALGDVGLPATAAAD 367
+ + L + L A A+
Sbjct: 230 DHLSQLLQEFNLNPQARAE 248
>gi|418274151|ref|ZP_12889649.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376009717|gb|EHS83043.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 295
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 127/241 (52%), Gaps = 12/241 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 17 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 77 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 132
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
I+T ++ +L GD+ F +V+++Q+E A RL EP T Y + I V + E
Sbjct: 133 YITTPILMNILA-GDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMA 189
Query: 286 FKVPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VPRT F P P VD+A+V L T P +FF +V + F +RK L +LQ
Sbjct: 190 MVVPRTVFVPSPNVDSAIVKLTALPLRTHVP--FDEAAFFKVVKAGFAHRRKNLWNNLQS 247
Query: 345 L 345
L
Sbjct: 248 L 248
>gi|376282360|ref|YP_005156186.1| dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|385270038|ref|YP_005813198.1| Dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|347975178|gb|AEP35199.1| Dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|371908390|emb|CAX09019.1| dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|438690280|emb|CCP49537.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis A/7249]
gi|438691364|emb|CCP48638.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis A/5291]
gi|438692737|emb|CCP47739.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis A/363]
Length = 277
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 150/269 (55%), Gaps = 19/269 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFE-------ESLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
+RK+L SL++L ++ + L +G
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGF 253
>gi|319946185|ref|ZP_08020425.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
gi|417919676|ref|ZP_12563204.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
gi|319747567|gb|EFV99820.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
gi|342832304|gb|EGU66603.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
Length = 291
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 136/266 (51%), Gaps = 12/266 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGALSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ ++ PAVT FF++ ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRREE---PAVTVKDEDFFFTVSKASFVHRRK 235
Query: 337 MLRKSLQHLCTSLEIEKALGDVGLPA 362
L +L E KA + G+ A
Sbjct: 236 TLWNNLTSRFGKTEEIKAKLEAGIQA 261
>gi|15605077|ref|NP_219862.1| dimethyladenosine transferase [Chlamydia trachomatis D/UW-3/CX]
gi|76789080|ref|YP_328166.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
gi|166154566|ref|YP_001654684.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
gi|166155441|ref|YP_001653696.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|301335829|ref|ZP_07224073.1| dimethyladenosine transferase [Chlamydia trachomatis L2tet1]
gi|339626024|ref|YP_004717503.1| dimethyladenosine transferase [Chlamydia trachomatis L2c]
gi|385239868|ref|YP_005807710.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768]
gi|385240791|ref|YP_005808632.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222]
gi|385242644|ref|YP_005810483.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301]
gi|385243561|ref|YP_005811407.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC]
gi|385244441|ref|YP_005812285.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC]
gi|385246254|ref|YP_005815076.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074]
gi|27151560|sp|O84358.1|RSMA_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|119365015|sp|Q3KM04.1|RSMA_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729770|sp|B0B7S3.1|RSMA_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729771|sp|B0BBY8.1|RSMA_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|3328775|gb|AAC67949.1| Dimethyladenosine Transferase [Chlamydia trachomatis D/UW-3/CX]
gi|76167610|gb|AAX50618.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
gi|165930554|emb|CAP04049.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
gi|165931429|emb|CAP07003.1| dimethyladenosine transferase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|296435873|gb|ADH18047.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768]
gi|296436799|gb|ADH18969.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222]
gi|296437733|gb|ADH19894.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074]
gi|297140232|gb|ADH96990.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301]
gi|297748484|gb|ADI51030.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC]
gi|297749364|gb|ADI52042.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC]
gi|339461258|gb|AEJ77761.1| dimethyladenosine transferase [Chlamydia trachomatis L2c]
gi|440525271|emb|CCP50522.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis K/SotonK1]
gi|440526158|emb|CCP51642.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/8200/07]
gi|440528838|emb|CCP54322.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis D/SotonD6]
gi|440535983|emb|CCP61496.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/795]
gi|440536875|emb|CCP62389.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/440/LN]
gi|440537765|emb|CCP63279.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/1322/p2]
gi|440538655|emb|CCP64169.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/115]
gi|440540435|emb|CCP65949.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2/25667R]
gi|440541324|emb|CCP66838.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L3/404/LN]
gi|440542211|emb|CCP67725.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/UCH-2]
gi|440543102|emb|CCP68616.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Canada2]
gi|440543993|emb|CCP69507.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/LST]
gi|440544883|emb|CCP70397.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams1]
gi|440545773|emb|CCP71287.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/CV204]
gi|440914035|emb|CCP90452.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams2]
gi|440914925|emb|CCP91342.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams3]
gi|440915817|emb|CCP92234.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Canada1]
gi|440916711|emb|CCP93128.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams4]
gi|440917601|emb|CCP94018.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams5]
Length = 277
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 150/269 (55%), Gaps = 19/269 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFE-------ESLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
+RK+L SL++L ++ + L +G
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGF 253
>gi|217076587|ref|YP_002334303.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
gi|217036440|gb|ACJ74962.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
Length = 261
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 131/235 (55%), Gaps = 18/235 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ N EI ++ +A VQ G+ VLEIGPG G++T L+ GA V+A+E D+ +
Sbjct: 15 KKSLGQNFLTNLEIAKKIVESANVQTGETVLEIGPGAGTITEFLIKKGANVVAVEIDKRL 74
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
++ +RF + K+ +DF+K F+ + F KVV+NIP++I+ +IK
Sbjct: 75 TPIL-DRFNEFENFKIYYQDFLK----------FDMKLLGENF-KVVSNIPYSITGMIIK 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
++L FS VL++Q+E RL+ + + + V +++ E V + NF P
Sbjct: 123 KILFSK--FSTAVLMVQKEVGDRLLAKPGEDRSF--LTVVVQTFTDIEKVLHVSKGNFVP 178
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
P+VD+ V+ F K+ + + + F++ VS F KRK L +L+ +L+
Sbjct: 179 PPQVDSVVLKFTRKE--NIYEKYNIEEFWTFVSKCFEKKRKTLLNNLKGFVKNLD 231
>gi|163814787|ref|ZP_02206176.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759]
gi|158450422|gb|EDP27417.1| dimethyladenosine transferase [Coprococcus eutactus ATCC 27759]
Length = 287
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 139/254 (54%), Gaps = 15/254 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++S + +++ +AA + + D VLEIGPG G++T L + V+A+E D+++
Sbjct: 22 QKKFGQNFLIDSHVINKIISAADITKDDCVLEIGPGIGTMTQYLAESAGQVVAVEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ +D +K I + E R KVVAN+P+ I+T +I
Sbjct: 82 LPILDETLAEYDNVTVINDDILKVDIN----KIVEERNGGRPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L V +++Q+E A R+ V P T +Y +++ V +Y+EP VP F
Sbjct: 137 GLFEKHVPLLSVTVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAEPYIVANVPPNCFI 194
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHLC----TSL 349
P+P V +AV+ +L + + P V + F ++ ++FN +RK L+ + + T
Sbjct: 195 PRPGVGSAVI--RLTRFQEPPVKVKDEQLMFRLIRASFNQRRKTLQNGIANSGELSFTKE 252
Query: 350 EIEKALGDVGLPAT 363
E+ KAL +G+ A
Sbjct: 253 EVAKALESLGISAN 266
>gi|255506936|ref|ZP_05382575.1| dimethyladenosine transferase [Chlamydia trachomatis D(s)2923]
gi|385241724|ref|YP_005809564.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023]
gi|385245331|ref|YP_005814154.1| dimethyladenosine transferase [Chlamydia trachomatis E/150]
gi|386262707|ref|YP_005815986.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2]
gi|389858046|ref|YP_006360288.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW4]
gi|389858922|ref|YP_006361163.1| dimethyladenosine transferase [Chlamydia trachomatis E/SW3]
gi|389859798|ref|YP_006362038.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW5]
gi|289525395|emb|CBJ14872.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2]
gi|296434947|gb|ADH17125.1| dimethyladenosine transferase [Chlamydia trachomatis E/150]
gi|296438667|gb|ADH20820.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023]
gi|380249118|emb|CCE14410.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW5]
gi|380249993|emb|CCE13521.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW4]
gi|380250871|emb|CCE12632.1| dimethyladenosine transferase [Chlamydia trachomatis E/SW3]
gi|440527056|emb|CCP52540.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis D/SotonD1]
gi|440529730|emb|CCP55214.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis E/SotonE4]
gi|440530629|emb|CCP56113.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis E/SotonE8]
gi|440535097|emb|CCP60607.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis E/Bour]
Length = 277
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 150/269 (55%), Gaps = 19/269 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD S+ QL + E C + L+ E K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFE-------ESLSQLPMDIEITDACE---YPLTSLE-DK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
+RK+L SL++L ++ + L +G
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGF 253
>gi|222056012|ref|YP_002538374.1| dimethyladenosine transferase [Geobacter daltonii FRC-32]
gi|221565301|gb|ACM21273.1| dimethyladenosine transferase [Geobacter daltonii FRC-32]
Length = 275
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 8/228 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS+GQ+++++ + ++ A ++ D VLEIGPG G+LT++L+ VLA+E D+ +
Sbjct: 7 KKSMGQNFLVDGNVLSRIVEAVVLEPSDRVLEIGPGRGALTSLLVKRAEQVLAVELDRQL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V L+ + F+ D ++ +Q D +K + + S + +G KV AN+P+NIS+ VI
Sbjct: 67 VPLLEKEFSGADNVEFIQGDILKIELPEVLGSRW------NGRWKVAANLPYNISSQVIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+ L +FS ++L+LQ+E RL+ S T EY +++F N + V +F P
Sbjct: 121 KFLDNVSLFSSLILMLQKEVGDRLI-ASPGTKEYGILSVFCNLHFNISRVLIVKPGSFRP 179
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
PKVD+ V+ F + A V F +V ++F+ +RK L L+
Sbjct: 180 IPKVDSVVLKF-VPLAAPRQDVGDETLFRQVVKASFSQRRKTLANCLR 226
>gi|325663734|ref|ZP_08152138.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325470227|gb|EGC73460.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 298
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 141/257 (54%), Gaps = 13/257 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +A + + D VLEIGPG G++T L A V+A+E D+ +
Sbjct: 24 QKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTMTQYLACAAREVVAVEIDKAL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + +S D + V+ ED +K I + L + R KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLSSYDNVTVINEDVLKLDI----VKLAQERNGGKPI-KVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V +Y++P VP F
Sbjct: 139 GLFESHVPVQSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAKPYIAANVPPNCFM 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH---LCTSLE- 350
P+PKV +AV+ + + V K F ++ ++FN +RK L L++ + S E
Sbjct: 197 PRPKVGSAVIRLECHEEPPV-QVEDEKLMFRIIRASFNQRRKTLANGLKNSPEISLSREG 255
Query: 351 IEKALGDVGLPATAAAD 367
IE+A+ ++G A+ +
Sbjct: 256 IEQAIAELGKGASVRGE 272
>gi|380031484|ref|YP_004888475.1| dimethyladenosine transferase [Lactobacillus plantarum WCFS1]
gi|33516929|sp|Q88Z93.1|RSMA_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|342240727|emb|CCC77961.1| dimethyladenosine transferase [Lactobacillus plantarum WCFS1]
Length = 296
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 127/241 (52%), Gaps = 12/241 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 18 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVL 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 78 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYK 285
I+T ++ +L GD+ F +V+++Q+E A RL EP T Y + I V + E
Sbjct: 134 YITTPILMNILA-GDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQYRMAAEMA 190
Query: 286 FKVPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VPRT F P P VD+A+V L T P +FF +V + F +RK L +LQ
Sbjct: 191 MVVPRTVFVPSPNVDSAIVKLTALPLRTHVP--FDEAAFFKVVKAGFAHRRKNLWNNLQS 248
Query: 345 L 345
L
Sbjct: 249 L 249
>gi|312874729|ref|ZP_07734748.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
gi|311089474|gb|EFQ47899.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
Length = 295
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 142/254 (55%), Gaps = 17/254 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VGLV-RERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V + ++ F+V
Sbjct: 141 ITTPIILKLMHSPVKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAVKKDMDVDFAFEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
RT+F P PKVD+AVV K ++ + + F+ +V AF+ +RK L +L+ L
Sbjct: 200 KRTSFMPSPKVDSAVVVLK---PLEHKLLIEHEDLFNQIVKLAFSQRRKTLNNNLKSLIK 256
Query: 348 SLEI-EKALGDVGL 360
+ +K L D+ L
Sbjct: 257 DKDARQKLLNDLNL 270
>gi|325569335|ref|ZP_08145491.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC
12755]
gi|325157335|gb|EGC69496.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC
12755]
Length = 295
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 5/229 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L VLA E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLAKQAKQVLAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + +K++ +D ++ + + + S F +S KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYANVKIIHQDVLQADLSTTIRSEFSDTAAS---LKVVANLPYYITTPIMM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L E+V+++Q+E A R + T Y ++I V +Y E + F VP+T F P
Sbjct: 142 HFLESQVPVDEMVVMMQKEVADR-ISAVPGTKAYGSLSIAVQYYMEAKLAFIVPKTVFVP 200
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
QP VD+A++ ++ AVT K FF + +AF +RK L +LQ+
Sbjct: 201 QPNVDSAILKLT-RRPQPAVAVTDEKEFFKLTKAAFQLRRKTLWNNLQN 248
>gi|240145093|ref|ZP_04743694.1| dimethyladenosine transferase [Roseburia intestinalis L1-82]
gi|257202765|gb|EEV01050.1| dimethyladenosine transferase [Roseburia intestinalis L1-82]
Length = 290
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 136/255 (53%), Gaps = 17/255 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + +++ AA V + D VLEIGPG G++T L V A+E D ++
Sbjct: 22 QKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTMTQYLCENAREVTAVEIDTNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + V+ +D +K I + ++ KVVAN+P+ I+T +I
Sbjct: 82 IPILEDTLSAYDNVTVINQDILKLDI-----AKLAMERNGGKPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V FY++PE VP F
Sbjct: 137 GLFESHVPIDSITVMVQKEVADRMQVGPG--TKDYGALSLAVQFYAKPEIVANVPPNCFM 194
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQ-----HLCTS 348
P+P V +AV+ +L + + P V K F ++ ++FN +RK L L HL
Sbjct: 195 PRPNVGSAVI--RLTRHEEVPVQVDDEKLMFHIIRASFNQRRKTLANGLSNAPQVHLSKE 252
Query: 349 LEIEKALGDVGLPAT 363
EI++ + ++G P T
Sbjct: 253 -EIQECIAELGEPLT 266
>gi|388543070|ref|ZP_10146362.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. M47T1]
gi|388279156|gb|EIK98726.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. M47T1]
Length = 268
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + +EGD VLEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSINAREGDRVLEIGPGQGALTEGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ +FA + Q D +K F + G +VV N+P+NIST +I
Sbjct: 70 VPILNNQFAGRGNFSLHQGDALKFD--------FHTLGAEPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ + F V F
Sbjct: 122 HLLSNASLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVVHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L +S IE A
Sbjct: 180 PPPKVDSAIVRLVPHATLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKALLSSEAIEAA 238
>gi|168182310|ref|ZP_02616974.1| dimethyladenosine transferase [Clostridium botulinum Bf]
gi|237793398|ref|YP_002860950.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657]
gi|259494242|sp|C3KXY4.1|RSMA_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|182674690|gb|EDT86651.1| dimethyladenosine transferase [Clostridium botulinum Bf]
gi|229261997|gb|ACQ53030.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657]
Length = 275
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 136/249 (54%), Gaps = 15/249 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K F R + K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKID--------FNRLMENKDSIKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + + KV F P
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCDTKIIRKVSPNCFIP 185
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L + E +E
Sbjct: 186 RPKVDSIVI--KLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNINKESMEN 243
Query: 354 ALGDVGLPA 362
A G+ +
Sbjct: 244 AFERAGIDS 252
>gi|445382869|ref|ZP_21427337.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus thermophilus MTCC 5460]
gi|445395623|ref|ZP_21429068.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748394|gb|ELW73364.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748512|gb|ELW73477.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus thermophilus MTCC 5460]
Length = 290
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + FE
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQT-CVKEFENPDLP---I 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + ++F +RK L
Sbjct: 179 YMTAKVAFAVPRTVFVPAPNVDSAILKMT-RRKQPLVEVKDEDFFFRVSKASFLHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKNKL 255
>gi|77461356|ref|YP_350863.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1]
gi|118600888|sp|Q3K5T2.1|RSMA_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|77385359|gb|ABA76872.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1]
Length = 272
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + GD +LEIGPG G+LT +LN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKQLLSNAEIEAA 238
>gi|417838640|ref|ZP_12484878.1| dimethyladenosine transferase [Lactobacillus johnsonii pf01]
gi|338762183|gb|EGP13452.1| dimethyladenosine transferase [Lactobacillus johnsonii pf01]
Length = 296
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 15/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA ++ GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLIDLAAIKGIVEAADIKPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V +V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
T+F P+PKVD+AVV L + P + F +V F +RK L +L+ L
Sbjct: 200 KSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCFAQRRKTLANNLKTLIKD 257
Query: 349 L-EIEKALGDVGL 360
E EK + D+GL
Sbjct: 258 KDEREKLINDLGL 270
>gi|329920627|ref|ZP_08277314.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
gi|328935885|gb|EGG32345.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
Length = 295
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 142/254 (55%), Gaps = 17/254 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V + ++ F+V
Sbjct: 141 ITTPIILKLMHSPIKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAVKKDMDVDFAFEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
RT+F P PKVD+AVV K ++ + + F+ +V AF+ +RK L +L+ L
Sbjct: 200 KRTSFMPSPKVDSAVVVLK---PLEHKLLIEHEDLFNQIVKLAFSQRRKTLNNNLKSLIK 256
Query: 348 SLEI-EKALGDVGL 360
+ + +K L D+ L
Sbjct: 257 NKDSRQKLLNDLNL 270
>gi|398997172|ref|ZP_10700002.1| dimethyladenosine transferase [Pseudomonas sp. GM21]
gi|398124665|gb|EJM14171.1| dimethyladenosine transferase [Pseudomonas sp. GM21]
Length = 272
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D VLEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKTEDRVLEIGPGQGALTQGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGKSNFSLHQGDALKFD--------FTSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E R+ ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLHNASLIRDMHFMLQKEVVERMAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHTVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|320159790|ref|YP_004173014.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
gi|319993643|dbj|BAJ62414.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
Length = 305
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 120/235 (51%), Gaps = 13/235 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L S G PRKSLGQ+++ + I ++ +A + VLEIGPG GSLT VL V+
Sbjct: 34 LRSHGLAPRKSLGQNFLTDPAILRRIVESAELPPQAEVLEIGPGLGSLTRVLAQVARRVV 93
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ L+ E + ++VL D ++ M SS+G+ VVANIP+
Sbjct: 94 AVELDSTLIPLLDEVVSPYGNVEVLHGDILQFDPARLM--------SSAGYF-VVANIPY 144
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I++ V++ LL VVL +Q E A R+ E + + V Y P +
Sbjct: 145 YITSAVMRHLLEASIRPQRVVLTIQREVAERICA---VPGEMSLLALSVQVYGAPRVTLR 201
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
+P F+P PKVD+AVV L PA + FF ++ + F+ KRK LR +L
Sbjct: 202 IPAGAFYPPPKVDSAVVRVDLSPQPRIPA-EQLEIFFRLIRAGFSQKRKTLRNAL 255
>gi|225374814|ref|ZP_03752035.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM
16841]
gi|225213383|gb|EEG95737.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM
16841]
Length = 288
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 143/267 (53%), Gaps = 17/267 (6%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + +++ + + + D VLEIGPG G++T L
Sbjct: 10 TIEVLQKYNFNFQKKFGQNFLIDTHVLEKIIEESGITKDDFVLEIGPGIGTMTQYLCENA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D++++ ++ + ++ D ++V+ +D +K I K+ KVVA
Sbjct: 70 REVAAVEIDKNLIPILADTLSAYDNVEVINDDILKVDINK-----LAEEKNGGKPIKVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T +I L + +++Q+E A R+ V P T EY +++ V +Y++P
Sbjct: 125 NLPYYITTPIIMGLFESHVPIDSITIMVQKEVADRMQVGPG--TKEYGALSLAVQYYAKP 182
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKS 341
E VP F P+P V +AV+ +L + + P V K F ++ ++FN +RK L
Sbjct: 183 EIVAIVPPNCFMPRPNVGSAVI--RLTRHKEVPVQVNDEKLMFKIIRASFNQRRKTLANG 240
Query: 342 LQ-----HLCTSLEIEKALGDVGLPAT 363
L HL + I++++ ++G+P T
Sbjct: 241 LNNAPDIHLSKEV-IQESIEELGVPVT 266
>gi|146319655|ref|YP_001199367.1| dimethyladenosine transferase [Streptococcus suis 05ZYH33]
gi|146321852|ref|YP_001201563.1| dimethyladenosine transferase [Streptococcus suis 98HAH33]
gi|386578809|ref|YP_006075215.1| Dimethyladenosine transferase [Streptococcus suis GZ1]
gi|145690461|gb|ABP90967.1| Dimethyladenosine transferase [Streptococcus suis 05ZYH33]
gi|145692658|gb|ABP93163.1| Dimethyladenosine transferase [Streptococcus suis 98HAH33]
gi|292559272|gb|ADE32273.1| Dimethyladenosine transferase [Streptococcus suis GZ1]
Length = 302
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 17 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFL 76
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A VLA E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 77 AENAAEVLAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 132
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 133 KVVANLPYYITTSILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 190
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ +V FF + ++F +RK L
Sbjct: 191 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPLVSVKDEDFFFRVSKASFVHRRKTL 249
Query: 339 RKSL-QHLCTSLEIE----KALGDVGLPAT 363
+L H S E++ +ALG L A+
Sbjct: 250 WNNLTNHFGKSEEVKDKLTQALGMAELEAS 279
>gi|422338503|ref|ZP_16419463.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355372419|gb|EHG19760.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 264
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 126/234 (53%), Gaps = 13/234 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + E D +LEIGPG G+LT++L+ V+ IE D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNINENDEILEIGPGQGALTSLLVERVKKVICIEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+ + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSCKENYTLVMGDVLEVDLRKYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGESEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P P VD+A ++ K + Y S FF + +AF+ KRK + +L L S
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKDKISEDLFFKYIKAAFSNKRKNIVNNLATLGYS 227
>gi|334127324|ref|ZP_08501252.1| dimethyladenosine transferase [Centipeda periodontii DSM 2778]
gi|333389824|gb|EGK60982.1| dimethyladenosine transferase [Centipeda periodontii DSM 2778]
Length = 292
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 132/254 (51%), Gaps = 18/254 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDRSVVQGIVEAAELTSADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + ++ D +K +I +L L E + KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLKGYDNVTIVPGDILKLNI-PEILGLREGERF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A+R+ P + +Y ++I V +++ P VP +F P
Sbjct: 141 LLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSIAVQYFTVPRMVMDVPPRSFLP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P+V +AV+ Q D P V K FF +V +AF +RK L +L + E+ +
Sbjct: 199 APEVTSAVIAC---QVQDVPTVQPNDEKLFFRLVRAAFGQRRKTLLNALTGAGVTKEMSR 255
Query: 354 ALGDVGLPATAAAD 367
A GL A A+
Sbjct: 256 A----GLAAAEIAE 265
>gi|222153745|ref|YP_002562922.1| dimethyladenosine transferase [Streptococcus uberis 0140J]
gi|254807888|sp|B9DVT4.1|RSMA_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|222114558|emb|CAR43508.1| dimethyladenosine transferase [Streptococcus uberis 0140J]
Length = 290
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 134/258 (51%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D ++V+ +D +K ++S + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVQVINQDILKSDLQSQI----KQFKNPDLPL 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VP+T F P P VD+A++ +++ VT FF + F +RK L
Sbjct: 179 YMTAKVAFIVPKTVFVPAPNVDSAILKM-VRRPEPLIEVTDEDFFFRVAKVGFIHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H + EI+ L
Sbjct: 238 WNNLTSHFGKTEEIKTKL 255
>gi|259500886|ref|ZP_05743788.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
gi|302190661|ref|ZP_07266915.1| dimethyladenosine transferase [Lactobacillus iners AB-1]
gi|309809117|ref|ZP_07702990.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
gi|259167580|gb|EEW52075.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
gi|308170562|gb|EFO72582.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
Length = 295
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 141/254 (55%), Gaps = 17/254 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V + ++ F+V
Sbjct: 141 ITTPIILKLMHSPIKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAVKKDMDVDFAFEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
RT+F P PKVD+AVV K ++ + + F+ +V AF+ +RK L +L+ L
Sbjct: 200 KRTSFMPSPKVDSAVVVLK---PLEHKLLIEHEDLFNQIVKLAFSQRRKTLNNNLKSLIK 256
Query: 348 SLEI-EKALGDVGL 360
+ +K L D+ L
Sbjct: 257 DKDARQKLLNDLNL 270
>gi|154482621|ref|ZP_02025069.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC
27560]
gi|149736521|gb|EDM52407.1| dimethyladenosine transferase [Eubacterium ventriosum ATCC 27560]
Length = 288
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 143/266 (53%), Gaps = 13/266 (4%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
AT + +N +K GQ+++++S + + + A + + D VLEIGPG G++T L A
Sbjct: 9 ATKEIINKYSFAFQKKFGQNFLIDSNVLESIIRGAEITKDDFVLEIGPGIGTMTQYLCEA 68
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V+A+E D+ ++ ++ + + D ++V+ +D +K I+S K++ KVV
Sbjct: 69 ARQVVAVEIDKMLIPILEDTLSEYDNVEVINQDVLKVDIKS-----LAEEKNNGKPIKVV 123
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
AN+P+ I+T +I L G + +++Q+E A R+ + + +Y +++ V +Y+
Sbjct: 124 ANLPYYITTPIIMGLFESGVPIDSITIMVQKEVADRM-QTGPGSKDYGALSLAVQYYATA 182
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
+ V T F P+P VD+AV+ + K+ T V K F ++ ++FN +RK L
Sbjct: 183 KVILNVSATCFMPRPNVDSAVIKLTRHKEPT--VNVADEKLMFKIIRASFNQRRKTLVNG 240
Query: 342 LQH---LCTSLE-IEKALGDVGLPAT 363
L++ L S E I KA+ +G P T
Sbjct: 241 LKNSPELSFSKEQIVKAIEKIGKPET 266
>gi|420262740|ref|ZP_14765381.1| dimethyladenosine transferase [Enterococcus sp. C1]
gi|394770497|gb|EJF50301.1| dimethyladenosine transferase [Enterococcus sp. C1]
Length = 295
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 5/229 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + E V+E+GPG G+LT L VLA E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQLAKHAKQVLAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + +K++ +D ++ + + + S F +S KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTMQPYANVKIIHQDVLQADLSTTIRSEFSDTAAS---LKVVANLPYYITTPIMM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L E+V+++Q+E A R + T Y ++I V +Y E + F VP+T F P
Sbjct: 142 HFLESQVPVDEMVVMMQKEVADR-ISAVPGTKAYGSLSIAVQYYMEAKLAFIVPKTVFVP 200
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
QP VD+A++ ++ AVT K FF + +AF +RK L +LQ+
Sbjct: 201 QPNVDSAILKLT-RRPQPAVAVTDEKEFFKLTKAAFQLRRKTLWNNLQN 248
>gi|238917939|ref|YP_002931456.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
gi|238873299|gb|ACR73009.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
Length = 293
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 141/265 (53%), Gaps = 13/265 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI LN G +K GQ+++++ + +++ A V + D V+E+GPG G++T +L
Sbjct: 18 TIAVLNRYGFDFKKKFGQNFLIDENVVEKIVREAGVTKDDFVVEVGPGIGTMTQILCENA 77
Query: 164 ATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V+A+E D+ ++ ++ E S D + V+ ED +K I+ K+ KVV
Sbjct: 78 REVVAVEIDKKLIPILTEDTLSYYDNVTVINEDILKLDIKK-----LADEKNEGRPIKVV 132
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
AN+P+ I+T +I L + +++Q+E A R+ + T +Y +++ V FY++P
Sbjct: 133 ANLPYYITTPIIMGLFESHVPLDSITIMVQKEVADRM-QCGPGTKDYGALSLAVQFYAKP 191
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKS 341
+ VP + F P+P VD+AV+ +L++ P V + F ++ ++FN +RK + S
Sbjct: 192 KVVLNVPASCFMPRPNVDSAVI--RLERFKTPPVDVKNEHLMFKIIRASFNQRRKTMLNS 249
Query: 342 LQHLCTSLEIE---KALGDVGLPAT 363
+ + + E AL +GLP T
Sbjct: 250 VGNSGIGITKEALTNALETMGLPLT 274
>gi|296329439|ref|ZP_06871928.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296153448|gb|EFG94278.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 264
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 136/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ + ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYTLVMGDVLEVDFKKYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S + E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKSGK--ERGILTLAVEYYGESEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + +P A+
Sbjct: 234 ILNQIEVPENERAE 247
>gi|220908859|ref|YP_002484170.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425]
gi|219865470|gb|ACL45809.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425]
Length = 284
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 141/262 (53%), Gaps = 20/262 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + ++ AAA + D VLEIGPG G LT LL+ ++LAIE D+
Sbjct: 6 PRKQFGQHWLRSDRALQRILAAAELSVEDTVLEIGPGRGVLTRSLLDRVKSLLAIEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTDV 233
+ ++ FA + L+++Q +F++ + + ++ GF KVVANIP+NI+ +
Sbjct: 66 LYSFLQSEFAGKNNLRLVQGNFLELELEKLLTE-----ETGIGFPNKVVANIPYNITGPI 120
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
+++LL P F +VLL+Q+E A RL P+ +S Y +++ V + ++ E
Sbjct: 121 LEKLLGTIAQPNPQPFELIVLLVQKEVADRLAAHPN--SSAYGGLSVRVQYLAQCELICP 178
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFF--SMVSSAFNGKRKMLRKSLQHL 345
VP F+P PKVD+AV+ + +P +T F +V F +RKMLR +L+ +
Sbjct: 179 VPAGAFYPPPKVDSAVIRLR----PYHPPTGATHPAFLDQLVRMGFATRRKMLRNNLKSV 234
Query: 346 CTSLEIEKALGDVGLPATAAAD 367
+ + L + L A A+
Sbjct: 235 VERDRLSELLQQLDLNPQARAE 256
>gi|53805073|ref|YP_113120.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
gi|62900497|sp|Q60B77.1|RSMA_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|53758834|gb|AAU93125.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
Length = 257
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 134/256 (52%), Gaps = 14/256 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+++ + + ++ AA D ++EIGPG G LT LL +GA + AIE D+
Sbjct: 5 PRKRFGQNFLRDPGVIQEIVAAVGPAPSDRLVEIGPGEGVLTRELLQSGACLEAIELDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+V ++ RFA + +L++ + D +K +R+ ++ ER +VV N+P+NIST ++
Sbjct: 65 LVAALKRRFAGVGRLRIHEGDAMKFDLRT--IATGER-------LRVVGNLPYNISTPLL 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L D+ ++ +LQ+E RL + Y +++ Y + ++ F V F
Sbjct: 116 FHLFDQIDVIEDMHFMLQKEVVDRLCAGA-GDDHYGRLSVMAALYCQAQHLFDVGPECFH 174
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PQPKV +AVV +L P K ++V +AF +RK LR +L+ L + +A
Sbjct: 175 PQPKVVSAVV--RLVPHAVPPDAGMVKQVSAVVVAAFGQRRKTLRNALKGLLDETAMVRA 232
Query: 355 LGDVGLPAT--AAADY 368
D G A + ADY
Sbjct: 233 GIDPGARAEELSLADY 248
>gi|373107972|ref|ZP_09522263.1| dimethyladenosine transferase [Stomatobaculum longum]
gi|371650138|gb|EHO15606.1| dimethyladenosine transferase [Stomatobaculum longum]
Length = 283
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 139/253 (54%), Gaps = 12/253 (4%)
Query: 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
RF +K GQ+++++S + D++AAAA + E D VLEIGPG G+LT L VLA+E D
Sbjct: 21 RF-QKKFGQNFLIDSHVLDRIAAAAELTEEDAVLEIGPGIGTLTQHLAERAGKVLAVEID 79
Query: 173 QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
+ ++ ++ E A D +++LQ D ++ ++ L R KVVAN+P+ I+T
Sbjct: 80 RTLIPILEESLADYDNVEILQGDILEQNLDELAEKLGGRP------MKVVANLPYYITTP 133
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
++ LL + +++Q E A R+ + S +Y +++ V +Y+ E VP
Sbjct: 134 ILMTLLESKLPIVSITVMVQREVAERM-QASPGGKDYGALSLAVQYYAAAEIVANVPPHC 192
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKS-FFSMVSSAFNGKRKMLRKSLQHLCTSLE- 350
F P+PKV +AV+ LK+ + P ++ F ++ ++FN +RK L L++ + +
Sbjct: 193 FLPRPKVGSAVIC--LKKYREKPVQAENEALLFRIIRASFNQRRKTLVNGLKNAGFAKDK 250
Query: 351 IEKALGDVGLPAT 363
I AL + LP T
Sbjct: 251 ITAALQALELPET 263
>gi|389857518|ref|YP_006359761.1| dimethyladenosine transferase [Streptococcus suis ST1]
gi|353741236|gb|AER22243.1| dimethyladenosine transferase [Streptococcus suis ST1]
Length = 290
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 142/270 (52%), Gaps = 13/270 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AESAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ +V FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPLVSVKDEDFFFRVSKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIE----KALGDVGLPAT 363
+L H S E++ +ALG L A+
Sbjct: 238 WNNLTNHFGKSDEVKDKLTQALGMAELEAS 267
>gi|89101161|ref|ZP_01173994.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911]
gi|89084129|gb|EAR63297.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911]
Length = 293
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 131/229 (57%), Gaps = 10/229 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A ++EG +EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAELREGSGAIEIGPGIGALTEQLAKRSEKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A +V+ +D +K +++ + E R + VVAN+P+ ++T +I
Sbjct: 83 LPILKETLAPYPNAEVIHQDVLKADVKTTI----EERFAPGQDLMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V +LQ+E A R+ +P + +Y ++I V +Y+E E VP+T F
Sbjct: 139 KLLEEKLPIRGIVCMLQKEVADRISAKPG--SKDYGSLSIAVQYYTEAETVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA-FNGKRKMLRKSL 342
PQP VD+AV+ +L + P + ++FF V+ A F +RK + +L
Sbjct: 197 PQPNVDSAVI--RLTRREQPPVLVKDEAFFFQVTKASFAQRRKTILNNL 243
>gi|404330868|ref|ZP_10971316.1| dimethyladenosine transferase [Sporolactobacillus vineae DSM 21990
= SL153]
Length = 294
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 6/243 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AA + V+EIGPG GSLT L A V+A+E D +
Sbjct: 23 KKSLGQNFLADENILKNIVQAANLTRDSYVVEIGPGAGSLTQYLAEAAGKVVAVEIDGRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
++ E + D + V D +K + + F + VVAN+P+ ++T ++
Sbjct: 83 KAILEETLQNYDNVVVRFGDVLKMDLPKMIAEEF----PADAAVTVVANLPYYVTTPILL 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A RL E S Y ++I V + ++P VPRT F P
Sbjct: 139 KLLTDHLPLRSIVVMVQKEVADRL-EASPGQKSYGSLSIAVQYLADPSIVMTVPRTVFIP 197
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
QP VD+AV+ ++ AVT FF ++ ++F +RK L +L H E ++A+
Sbjct: 198 QPNVDSAVIRLDIRPEKRV-AVTDEPFFFQIIRASFAHRRKTLMNNLMHQLFPKEQKEAV 256
Query: 356 GDV 358
DV
Sbjct: 257 LDV 259
>gi|166031341|ref|ZP_02234170.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC
27755]
gi|346307325|ref|ZP_08849463.1| ribosomal RNA small subunit methyltransferase A [Dorea
formicigenerans 4_6_53AFAA]
gi|166028746|gb|EDR47503.1| dimethyladenosine transferase [Dorea formicigenerans ATCC 27755]
gi|345906158|gb|EGX75888.1| ribosomal RNA small subunit methyltransferase A [Dorea
formicigenerans 4_6_53AFAA]
Length = 292
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 126/229 (55%), Gaps = 7/229 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ +AA + + D+VLEIGPG G++T L A V A+E D+++
Sbjct: 24 QKKFGQNFLIDTHVLEKIISAAGITKDDMVLEIGPGIGTMTQYLAEAAGKVAAVEIDKNL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K IR L E+ KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLSEYDNVMVINDDVLKVDIR----GLVEKENGGRP-VKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + +++Q+E A R+ + +Y +++ V +Y++P VP F P
Sbjct: 139 GLFEGNVPVESITVMVQKEVADRM-QTGPGNKDYGALSLAVQYYADPYIVANVPPNCFMP 197
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
+PKV +AV+ + A V + K F ++ ++FN +RK L L +
Sbjct: 198 RPKVGSAVIRLT-RHAAPPVKVDNEKWMFDIIRASFNQRRKTLANGLSN 245
>gi|340759095|ref|ZP_08695671.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
varium ATCC 27725]
gi|251835762|gb|EES64300.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
varium ATCC 27725]
Length = 264
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 139/254 (54%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ + E+ ++ + V E D +LEIGPG G+LT +LL+ V+A+E D+
Sbjct: 6 KKKFGQNFLTDQKEVLRKIMEVSDVNENDTILEIGPGEGALTALLLDKAQKVVAVEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++R++F + ++ D ++ ++ ++ + G KVVANIP+ I++ +I
Sbjct: 66 LEKILRKKFNDNPKYTLVMNDVLETDLKEYL---------TLGI-KVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ +I E+ +++Q+E A R+ + + E + + V ++ + EY F +P+ F
Sbjct: 116 NKLIENREIIDEIYIMVQKEVAERIC--ARKGKERSVLTLAVEYFGKAEYLFTIPKEAFT 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-EIEK 353
P PKVD+A ++ KL + Y + FF V +AF KRK L + L S E+ K
Sbjct: 174 PIPKVDSAFMSIKLYKDDKYKKIIEEDIFFKYVKAAFANKRKNLLNNFTALGISKDELRK 233
Query: 354 ALGDVGLPATAAAD 367
L + G+ T A+
Sbjct: 234 ILSEAGIKETERAE 247
>gi|253752653|ref|YP_003025794.1| dimethyladenosine transferase [Streptococcus suis SC84]
gi|253754479|ref|YP_003027620.1| dimethyladenosine transferase [Streptococcus suis P1/7]
gi|253756412|ref|YP_003029552.1| dimethyladenosine transferase [Streptococcus suis BM407]
gi|386582961|ref|YP_006079365.1| dimethyladenosine transferase [Streptococcus suis SS12]
gi|386589082|ref|YP_006085483.1| dimethyladenosine transferase [Streptococcus suis A7]
gi|403062417|ref|YP_006650633.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Streptococcus
suis S735]
gi|251816942|emb|CAZ52591.1| dimethyladenosine transferase [Streptococcus suis SC84]
gi|251818876|emb|CAZ56719.1| dimethyladenosine transferase [Streptococcus suis BM407]
gi|251820725|emb|CAR47487.1| dimethyladenosine transferase [Streptococcus suis P1/7]
gi|353735107|gb|AER16117.1| dimethyladenosine transferase [Streptococcus suis SS12]
gi|354986243|gb|AER45141.1| dimethyladenosine transferase [Streptococcus suis A7]
gi|402809743|gb|AFR01235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus suis S735]
Length = 290
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A VLA E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVLAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTSILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ +V FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPLVSVKDEDFFFRVSKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIE----KALGDVGLPAT 363
+L H S E++ +ALG L A+
Sbjct: 238 WNNLTNHFGKSEEVKDKLTQALGMAELEAS 267
>gi|421505663|ref|ZP_15952598.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas mendocina DLHK]
gi|400343360|gb|EJO91735.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas mendocina DLHK]
Length = 269
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 128/239 (53%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A +EG+ +LEIGPG G++T LL +GA + IE D +
Sbjct: 9 RKRFGQNFLHDAGVIDRILRAIRAKEGERLLEIGPGQGAITEGLLGSGAQLDVIELDLDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +F + ++ Q D +K F R +++ G +VV N+P+NIST +I
Sbjct: 69 IPILQGKFGDNPRFRLNQGDALKFD--------FARLEAAPGSLRVVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E R+ ++ ++I V ++ E+ F V F P
Sbjct: 121 HLLDNAPLIRDMHFMLQKEVVERMAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 179
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V + +PA + +V AFN +RK LR +L+ L + IE A
Sbjct: 180 PPKVDSAIVRLVPHEVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIEAA 237
>gi|255348718|ref|ZP_05380725.1| dimethyladenosine transferase [Chlamydia trachomatis 70]
gi|255503258|ref|ZP_05381648.1| dimethyladenosine transferase [Chlamydia trachomatis 70s]
Length = 277
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 151/269 (56%), Gaps = 19/269 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N GR +K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVN--GRV-KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD S+ QL + E C + L+ E K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFE-------ESLSQLPMDIEITDACE---YPLTSLE-DK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
+RK+L SL++L ++ + L +G
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGF 253
>gi|404372839|ref|ZP_10978121.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_2_43FAA]
gi|226914216|gb|EEH99417.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_2_43FAA]
Length = 281
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 12/235 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A A V E D+V+EIGPG G+LT LLN V+AIE D ++
Sbjct: 21 KSLGQNFLIDDSVPRDIVAGAEVDENDLVIEIGPGVGTLTAQLLNKAKKVVAIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + ++ +D +K + F K+VAN+P+ ++T +I +
Sbjct: 81 PILNQEIGDNPKFTLIHKDALKVN--------FNEIIGEEKSVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ P +Y +++ V +Y + +VP F P
Sbjct: 133 LLKEGYNFKSLTIMIQKEVAERMNANPG--NKDYGSLSLLVQYYCNTKIVRRVPPQCFIP 190
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
+PKVD+ V+ K + V + K FF ++ ++FN +RK L ++++ S E
Sbjct: 191 RPKVDSIVIRLD-KLSEPKVKVENEKLFFDIIRNSFNMRRKTLWNGVKNIGLSKE 244
>gi|374298185|ref|YP_005048376.1| dimethyladenosine transferase [Clostridium clariflavum DSM 19732]
gi|359827679|gb|AEV70452.1| dimethyladenosine transferase [Clostridium clariflavum DSM 19732]
Length = 284
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 129/231 (55%), Gaps = 13/231 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + I ++ A + + D+V+EIGPG GS+T L + V A+E D++++
Sbjct: 18 KSLGQNFLTDYNIVSRIVDTAEITKDDMVIEIGPGIGSMTVELASRAGRVAAVEIDKNLI 77
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ E ++++ D +K ++ S + KVVAN+P+ I+T +I +
Sbjct: 78 PALEENLREFSNVEIINRDIMKVSVKDITYS------KQNMKLKVVANLPYYITTPIIMK 131
Query: 237 LLPMGDIFSEV-VLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL D E+ V ++Q+E A R+V +P +Y +++ V +Y++PE F VP F
Sbjct: 132 LLEEEDNDIELMVFMVQKEVAQRMVAKPG--GKDYGALSVAVQYYAQPEKVFDVPPHCFI 189
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS-FFSMVSSAFNGKRKMLRKSLQH 344
PQP+VD+ VV KLK+ P + K FF +V +AF +RK L +L +
Sbjct: 190 PQPEVDSTVV--KLKRNVIPPVILKDKDMFFKVVKAAFGQRRKTLLNALSN 238
>gi|262281831|ref|ZP_06059600.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA]
gi|262262285|gb|EEY80982.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA]
Length = 290
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 140/271 (51%), Gaps = 17/271 (6%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ ++ PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRRE---RPAVEVQDEKFFFKVTKASFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEI----EKALGDVGLPA 362
L +L + S E+ E+AL L A
Sbjct: 236 TLWNNLTSYFGKSEEVKTKLERALEKADLAA 266
>gi|339485334|ref|YP_004699862.1| dimethyladenosine transferase [Pseudomonas putida S16]
gi|431800453|ref|YP_007227356.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Pseudomonas
putida HB3267]
gi|338836177|gb|AEJ10982.1| dimethyladenosine transferase [Pseudomonas putida S16]
gi|430791218|gb|AGA71413.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida HB3267]
Length = 266
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA ++ Q D +K F + KVV N+P+NIST +I
Sbjct: 70 VPILQHKFADRSNFRLHQGDALKFD--------FNQLGVPPRSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E R+ P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERMAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + YPA K +V AFN +RK LR +++ L S IE A
Sbjct: 180 PPPKVDSAIVRLVPHEVLPYPA-KDAKLLEQVVREAFNQRRKTLRNTMKGLLDSAAIEAA 238
>gi|417089858|ref|ZP_11955750.1| dimethyladenosine transferase [Streptococcus suis R61]
gi|353533799|gb|EHC03439.1| dimethyladenosine transferase [Streptococcus suis R61]
Length = 290
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ +V FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPLVSVKDEDFFFRVSKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIE----KALGDVGLPAT 363
+L H S E++ +ALG L A+
Sbjct: 238 WNNLTNHFGKSEEVKAKLTRALGIAELEAS 267
>gi|385800663|ref|YP_005837067.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228]
gi|309390027|gb|ADO77907.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228]
Length = 297
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 142/265 (53%), Gaps = 12/265 (4%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
T K LN +KSLGQ+++++ I + ++++AA++ + ++EIGPG GSLT +LN
Sbjct: 10 VTKKILNKYNLNLKKSLGQNFLVDQNIIEIISSSAAIKGDEFIIEIGPGIGSLTQSILNK 69
Query: 163 GAT--VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
T +LA+EKD MV ++ + FA ++L ++ +D +K + E+ K
Sbjct: 70 LKTGNLLAVEKDAAMVEVLNDIFAEENKLTLINQDALKI----DWPEILEKYNPEKKKVK 125
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
++AN+P+ ++T +I +L +V ++Q+E R+ T ++ +++ V +Y
Sbjct: 126 LLANLPYYVTTPIIMGVLESEIELENMVFMVQKEVGERIC-AGPETKKFGSLSVAVQYYM 184
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDY-PAVTSTKSFFSMVSSAFNGKRKMLR 339
+PE +VP F PQP VD+ +V Y V + FF +V S F +RK LR
Sbjct: 185 QPEIIHQVPANVFIPQPNVDSVIVGLAPYPENIYQKEVLNQDFFFQIVKSIFQQRRKTLR 244
Query: 340 KSL-QHLCTSLE---IEKALGDVGL 360
SL + +L+ + +AL D G+
Sbjct: 245 NSLSRSAIINLDRDLVTQALNDEGI 269
>gi|187777327|ref|ZP_02993800.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC
15579]
gi|187774255|gb|EDU38057.1| dimethyladenosine transferase [Clostridium sporogenes ATCC 15579]
Length = 278
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 133/248 (53%), Gaps = 13/248 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 19 KNLGQNFLVDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLEKAKEVYSIELDGDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 79 PILKEELKEYNNFTLIHKDALKIDFN----GLMENKDS----IKLVANLPYYVTTPIISR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + + KV F P
Sbjct: 131 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCDTKIIRKVSPNCFIP 188
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEKA 354
+PKVD+ V+ K + V S K FF++V S+FN +RK L SL+ L E +E A
Sbjct: 189 RPKVDSIVIKLD-KLSEPRVKVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNIDKENMENA 247
Query: 355 LGDVGLPA 362
G+ +
Sbjct: 248 FERAGIDS 255
>gi|304320043|ref|YP_003853686.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
gi|303298946|gb|ADM08545.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
Length = 273
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 129/240 (53%), Gaps = 17/240 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+ S G +K+LGQH++L+ I ++AA A+ G+ V+EIGPG G LT LL AGA +
Sbjct: 14 VRSHGLLAKKTLGQHFLLDMNITRKIAALCALSPGEDVIEIGPGPGGLTRALLEAGAALT 73
Query: 168 AIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
IE+D +V ++ E A+ QL L+ D + R+ M G + +N+P
Sbjct: 74 TIERDDRIVPILSEISAAFPGQLTPLEGDALSVDYRALM----------PGGGVIASNLP 123
Query: 227 FNISTDVIKQLLPMGD-IFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
+NIST+++ + L + + +VL+ Q E R++ S + Y +++ + P
Sbjct: 124 YNISTELLVRWLTLSPRPWRRMVLMFQREVGDRILA-SPGSKAYGRLSVLSQIAARPTLG 182
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
F +P F P PKV ++V+ F L AT+ V + + + ++AF +RKM+RK+L L
Sbjct: 183 FHLPARAFTPPPKVASSVLVF-LPPATEPQNVAALE---RVTAAAFGQRRKMIRKTLAPL 238
>gi|16329260|ref|NP_439988.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|383320999|ref|YP_005381852.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383324169|ref|YP_005385022.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490053|ref|YP_005407729.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435319|ref|YP_005650043.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|451813419|ref|YP_007449871.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|27151564|sp|P72666.1|RSMA_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|1651740|dbj|BAA16668.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|339272351|dbj|BAK48838.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|359270318|dbj|BAL27837.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359273489|dbj|BAL31007.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359276659|dbj|BAL34176.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957129|dbj|BAM50369.1| dimethyladenosine transferase [Bacillus subtilis BEST7613]
gi|451779388|gb|AGF50357.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
Length = 284
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 134/267 (50%), Gaps = 22/267 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEG--------DIVLEIGPGTGSLTNVLLNAGATV 166
PRK GQH++ + + AAA +Q G D +LEIGPG G LT LL G V
Sbjct: 5 PRKRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRDRLLEIGPGMGVLTKQLLATGNPV 64
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D+ + +R++ + +L+ D + + +L + S KVVANIP
Sbjct: 65 VAVELDRDLCLKLRKKLGQRENFLLLEGDVLILDLN----ALLQDFPQFSPLNKVVANIP 120
Query: 227 FNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+NI++ +++ LL P F +VLL+Q+E A RL +PS T Y +++ + + +
Sbjct: 121 YNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPS--TKAYGALSVRMQYLA 178
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
++ VP F P PKVD+AV+ P + ++ F +RKMLR
Sbjct: 179 RVDWIVDVPPKAFTPPPKVDSAVIRLTPYPVEQLPG--DRRLLDQLLCLGFANRRKMLRN 236
Query: 341 SLQHLCTSLEIEKALGDVGLPATAAAD 367
+L+ L ++ L + LP+TA A+
Sbjct: 237 NLKGLIAPEQLTTLLEQLALPSTARAE 263
>gi|323701639|ref|ZP_08113311.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM
574]
gi|323533412|gb|EGB23279.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM
574]
Length = 296
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 3/228 (1%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ++++++ I D++ AA + E D+ EIGPG G LT L VLA+E DQ++
Sbjct: 22 RKALGQNFLMDANIIDKIVRAANLSENDLAFEIGPGLGVLTRRLAQEAGRVLAVEIDQNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTDVI 234
+ ++ E A + + +V+Q D K + + G A K+VAN+P+ I+T ++
Sbjct: 82 LPILNETLADLPKAEVIQADARKVDFDQLAAERTQGQFGPGGKAYKLVANLPYYITTPLL 141
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G +V+++Q+E A RL + S +Y +++ V +Y+ PE KVP+T F+
Sbjct: 142 LHLLTSGFNLELLVVMIQKEVADRL-QASPGGKDYGSLSVVVQYYTVPEIVCKVPKTVFY 200
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P P VD+AV+ ++ + + ++FF +V +AF +RK L +L
Sbjct: 201 PVPDVDSAVIRLT-RRPVPPVQLRNEETFFKVVRAAFGQRRKTLINAL 247
>gi|15896238|ref|NP_349587.1| dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
gi|337738193|ref|YP_004637640.1| dimethyladenosine transferase [Clostridium acetobutylicum DSM 1731]
gi|27151592|sp|Q97EX0.1|RSMA_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|15026041|gb|AAK80927.1|AE007795_6 Dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
gi|336292364|gb|AEI33498.1| dimethyladenosine transferase [Clostridium acetobutylicum DSM 1731]
Length = 276
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 130/248 (52%), Gaps = 13/248 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++ ++ + D + A +Q+ D ++EIGPG G+LT LL V AIE D+ ++
Sbjct: 19 KRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRLLEKAKKVCAIELDESLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ D ++ D +K + + K+VAN+P+ ++T +I +
Sbjct: 79 PIITNEMKEYDNFTLIHNDALKVDFNNII--------GEEQSVKLVANLPYYVTTPIISK 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E R+ +PS T +Y + + V +Y + + V + F P
Sbjct: 131 LLNEGYNFKSLTIMIQKEVGDRIAAKPS--TKDYGALTLLVQYYCDVKVVRVVKPSCFIP 188
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-CTSLEIEKA 354
QPKVD+ V+ K V K FF+++ SAFN +RK L +++ L +S ++EKA
Sbjct: 189 QPKVDSLVIRLD-KLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKGLKLSSEDLEKA 247
Query: 355 LGDVGLPA 362
G+ +
Sbjct: 248 FEAAGIDS 255
>gi|346314950|ref|ZP_08856467.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
2_2_44A]
gi|345905888|gb|EGX75625.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
2_2_44A]
Length = 291
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 135/266 (50%), Gaps = 11/266 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L + G F +K+ GQ++++ S I D++A A + + +V EIGPG G+LT L
Sbjct: 11 TKEILETHGMFAKKNYGQNFLIESGIVDKIARHAVLSDHCVVFEIGPGIGALTQYLCEYA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV- 222
V++ E D+ + ++ + D +++ DF++ ++ R G+ V+
Sbjct: 71 KKVVSFEIDERLPDVLADTLQEYDNFELVMSDFLEIDLKEWC-----RTYRKEGYDVVIA 125
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
AN+P+ I+T ++ ++ + + +++Q+E A R + T +Y ++I + E
Sbjct: 126 ANLPYYITTPILFKIFESKADVAAITVMMQKEVADRFA-AEVNTKDYNALSIITQYRCEV 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
KVP+ F P+P VD+AV+ F+ + D P +SFFS+V + F +RK + +
Sbjct: 185 TPVMKVPKNVFLPKPNVDSAVLQFRFR---DTPQNIEEESFFSLVKACFRQRRKTILNNY 241
Query: 343 QHLCTSLEIEKA-LGDVGLPATAAAD 367
C + +A L G+ T A+
Sbjct: 242 GEYCQDKQQARAELEKSGIDCTRRAE 267
>gi|409418305|ref|ZP_11258303.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. HYS]
Length = 268
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 130/240 (54%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + G+ +LEIGPG G+LT+ LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKAGERMLEIGPGQGALTSGLLASGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA D ++ Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGRDNFRLHQGDALKFD--------FTSLGAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL ++ ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLANAELIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA + +V AFN +RK LR +L+ L +S IE A
Sbjct: 180 PPPKVDSAIVRLVPHETLPFPA-KDHRLLERIVREAFNQRRKTLRNTLKALLSSDAIEAA 238
>gi|330444319|ref|YP_004377305.1| dimethyladenosine transferase [Chlamydophila pecorum E58]
gi|328807429|gb|AEB41602.1| dimethyladenosine transferase [Chlamydophila pecorum E58]
Length = 280
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 131/233 (56%), Gaps = 15/233 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ + + VQEG+ VLEIGPG G+LT L+++GA V+A+EKD
Sbjct: 22 PKKGLSQNFLIDGNIIRKILSESQVQEGEWVLEIGPGFGALTEGLVSSGAHVIALEKDPK 81
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E + L++ S + G +++AN+P++I+T ++
Sbjct: 82 FATTLSE--LPLSHLEITDARTYPLQKLSEL--------GWEGKGRMIANLPYHITTPLL 131
Query: 235 KQLLPMG-DIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
++ ++ V +++Q+E A R++ +P +Y + IF+ F++ Y FKV +
Sbjct: 132 IKIFSEAPHMWKSVTVMVQDEVARRIIAQPG--NKDYGSLTIFLQFFAHVRYAFKVRASC 189
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
F+PQP+V +AVV ++K+ P T K FF++ +AF +RK L +L+ L
Sbjct: 190 FYPQPQVHSAVVHMEVKEHFPLPE-TVFKDFFTLTRTAFQQRRKYLTNTLKDL 241
>gi|225181539|ref|ZP_03734981.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
gi|225167787|gb|EEG76596.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
Length = 296
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 33/264 (12%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+ L G +K GQ+++++ I ++ +AA VQ+ D +LEIGPG GSLT L +
Sbjct: 22 RLLEQHGVKLKKKWGQNFLVDENILKKIISAADVQKSDRILEIGPGIGSLTQKLAENASR 81
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
VL +E D ++ ++RE A D ++++ D + G K+VAN+
Sbjct: 82 VLTVEIDTRLIPVLRETLAEYDNVEIIHGD---------AMDFDPAPVCEEGPVKLVANL 132
Query: 226 PFNISTDVIKQLLPMG-DIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPE 283
P+N++T ++ + L + FS +V ++Q+E A R+V +P + Y +++ N+ + E
Sbjct: 133 PYNVATPLLYRWLKDSRNCFSRLVCMVQKEVAERIVAKPG--SKAYGTLSVICNYAARCE 190
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDY--PA--VTSTKSFFSMVSSAFNGKRKML- 338
F VPRT FFP+P V +AVV Q Y PA V FF +V + F +RK L
Sbjct: 191 IAFDVPRTVFFPRPDVSSAVV-----QLIPYHVPAEDVADDAFFFKVVEAVFAQRRKTLL 245
Query: 339 ----------RKSLQHLCTSLEIE 352
++ L +C+++EI+
Sbjct: 246 NTLNAAFPLTKEQLTAVCSAVEID 269
>gi|125718907|ref|YP_001036040.1| dimethyladenosine transferase [Streptococcus sanguinis SK36]
gi|166221709|sp|A3CQN5.1|RSMA_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|125498824|gb|ABN45490.1| Dimethyladenosine transferase, putative [Streptococcus sanguinis
SK36]
Length = 290
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K ++ ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVNLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPR F P P VD+A++ ++ PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRKVFVPAPNVDSAILKMVRRER---PAVEVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|374703444|ref|ZP_09710314.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. S9]
Length = 273
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 128/239 (53%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A +E + +LEIGPG G+LT LLN+GA + IE D+ +
Sbjct: 10 RKRFGQNFLHDAGVIHRILRAIHAKEAEHLLEIGPGQGALTEGLLNSGAQLDVIELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +F S + ++ Q D +K F+R ++ +VV N+P+NIST +I
Sbjct: 70 IPILQAKFGSQPRFRLNQGDALKFD--------FQRLEAQPRSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLDNASLIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PK D+A+V + +PA K +V AFN +RK LR +L+ L + EIE A
Sbjct: 181 PPKFDSAIVRLVPHEVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLPASEIEAA 238
>gi|422417658|ref|ZP_16494613.1| dimethyladenosine transferase [Listeria seeligeri FSL N1-067]
gi|313635198|gb|EFS01504.1| dimethyladenosine transferase [Listeria seeligeri FSL N1-067]
Length = 295
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K + + S F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIASQFTKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPVDSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNL 244
>gi|386362090|ref|YP_006071421.1| dimethyladenosine transferase [Streptococcus pyogenes Alab49]
gi|421891804|ref|ZP_16322558.1| Dimethyladenosine transferase [Streptococcus pyogenes NS88.2]
gi|350276499|gb|AEQ23867.1| dimethyladenosine transferase [Streptococcus pyogenes Alab49]
gi|379982452|emb|CCG26280.1| Dimethyladenosine transferase [Streptococcus pyogenes NS88.2]
Length = 290
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 19/269 (7%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVEDEDFFFRVSRLSFVHRRK 235
Query: 337 MLRKSL-------QHLCTSLEIEKALGDV 358
L +L + + T LE AL D+
Sbjct: 236 TLWNNLTSHFGKSEDIKTKLEKGLALADI 264
>gi|384459704|ref|YP_005672124.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018]
gi|325510393|gb|ADZ22029.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018]
Length = 287
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 129/248 (52%), Gaps = 13/248 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++ ++ + D + A +Q+ D ++EIGPG G+LT LL V AIE D+ ++
Sbjct: 30 KRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRLLEKAKKVCAIELDESLI 89
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ D ++ D +K F K+VAN+P+ ++T +I +
Sbjct: 90 PIITNEMKEYDNFTLIHNDALKVD--------FNNIIGEEQSVKLVANLPYYVTTPIISK 141
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E R+ +PS T +Y + + V +Y + + V + F P
Sbjct: 142 LLNEGYNFKSLTIMIQKEVGDRIAAKPS--TKDYGALTLLVQYYCDVKVVRVVKPSCFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-CTSLEIEKA 354
QPKVD+ V+ K V K FF+++ SAFN +RK L +++ L +S ++EKA
Sbjct: 200 QPKVDSLVIRLD-KLEKPRVQVKDEKLFFNVIRSAFNMRRKTLWNAMKGLKLSSEDLEKA 258
Query: 355 LGDVGLPA 362
G+ +
Sbjct: 259 FEAAGIDS 266
>gi|374338791|ref|YP_005095508.1| Dimethyladenosine transferase [Streptococcus macedonicus ACA-DC
198]
gi|372284908|emb|CCF03219.1| Dimethyladenosine transferase [Streptococcus macedonicus ACA-DC
198]
Length = 290
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILDDTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++T ++ V FF + +F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILTMTRREQP-LVQVKDEDFFFRVSKISFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E + L
Sbjct: 238 WNNLTSHFGKSDETKAKL 255
>gi|19745394|ref|NP_606530.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS8232]
gi|209558786|ref|YP_002285258.1| dimethyladenosine transferase [Streptococcus pyogenes NZ131]
gi|306828033|ref|ZP_07461298.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782]
gi|410495728|ref|YP_006905574.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|27151569|sp|Q8P2N8.1|RSMA_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|19747502|gb|AAL97029.1| putative dimethyladenosine transferase [Streptococcus pyogenes
MGAS8232]
gi|209539987|gb|ACI60563.1| Dimethyladenosine transferase [Streptococcus pyogenes NZ131]
gi|304429749|gb|EFM32793.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782]
gi|410440888|emb|CCI63516.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 290
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 19/269 (7%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVSRLSFVHRRK 235
Query: 337 MLRKSL-------QHLCTSLEIEKALGDV 358
L +L + + T LE AL D+
Sbjct: 236 TLWNNLTSHFGKSEDIKTKLEKGLALADI 264
>gi|71902882|ref|YP_279685.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180]
gi|251783338|ref|YP_002997643.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|408402423|ref|YP_006860387.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|118600903|sp|Q1JIN6.1|RSMA_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|119365851|sp|Q48VC6.1|RSMA_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|71801977|gb|AAX71330.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180]
gi|94543239|gb|ABF33287.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10270]
gi|242391970|dbj|BAH82429.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|407968652|dbj|BAM61890.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 298
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 19/269 (7%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 187 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVSRLSFVHRRK 243
Query: 337 MLRKSL-------QHLCTSLEIEKALGDV 358
L +L + + T LE AL D+
Sbjct: 244 TLWNNLTSHFGKSEDIKTKLEKGLALADI 272
>gi|261403903|ref|YP_003240144.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
gi|261280366|gb|ACX62337.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
Length = 294
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 125/228 (54%), Gaps = 6/228 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + E LEIGPG G+LT L TV A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQTAGTVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++RE ++V D +K + LF + + VVAN+P+ ++T ++
Sbjct: 85 IPILREVLEPYGNVRVHHGDVLKVDLH----ELFRQDFADVSKVSVVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ + + +Y ++I V +YSEP+ VP T F P
Sbjct: 141 KLLEEKLPLENIVVMIQKEVAERMA-AAPGSKDYGSLSIAVQYYSEPKLVCIVPHTVFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
QP V++AV+ +++ V + FF +V ++F +RK + +L+
Sbjct: 200 QPNVESAVIRLAVREQPPV-RVEDERFFFEVVQASFAQRRKTIANNLK 246
>gi|347547663|ref|YP_004853991.1| putative dimethyladenosine transferase [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346980734|emb|CBW84641.1| Putative dimethyladenosine transferase (16S rRNA dimethylase)
[Listeria ivanovii subsp. ivanovii PAM 55]
Length = 295
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 134/251 (53%), Gaps = 7/251 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K ++ + + F + K+VA
Sbjct: 71 KEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKANVEEVISTQFTHPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAQVYDEEFFFEVTRASFAQRRKTLWNNL 244
Query: 343 QHLCTSLEIEK 353
+L++ K
Sbjct: 245 ASKFPALKVRK 255
>gi|336418947|ref|ZP_08599215.1| dimethyladenosine transferase [Fusobacterium sp. 11_3_2]
gi|336164160|gb|EGN67071.1| dimethyladenosine transferase [Fusobacterium sp. 11_3_2]
Length = 264
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 135/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + E D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNINENDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYTLVMGDVLEVDLRRYL---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGESEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S +F V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + + A+
Sbjct: 234 ILNQIEVSENERAE 247
>gi|302024552|ref|ZP_07249763.1| dimethyladenosine transferase [Streptococcus suis 05HAS68]
gi|330833629|ref|YP_004402454.1| dimethyladenosine transferase [Streptococcus suis ST3]
gi|329307852|gb|AEB82268.1| dimethyladenosine transferase [Streptococcus suis ST3]
Length = 290
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ +V FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPLVSVKDEDFFFRVSKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIE----KALGDVGLPAT 363
+L H S E++ +ALG L A+
Sbjct: 238 WNNLTNHFGKSDEVKDKLTRALGMAELEAS 267
>gi|223938516|ref|ZP_03630408.1| dimethyladenosine transferase [bacterium Ellin514]
gi|223892778|gb|EEF59247.1| dimethyladenosine transferase [bacterium Ellin514]
Length = 278
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + ++A A + + D VLEIGPG G LT +L+ VLAIEKD+ +V
Sbjct: 19 KSLGQNFLHDQNQLRRIADGAELSKSDKVLEIGPGLGPLTELLIERAGEVLAIEKDRRLV 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ +R+A+ +L +D ++ +IR R K+VAN+P+++++ ++
Sbjct: 79 DFLEKRYANTAGFTLLHQDALE-YIR--------REPQDWSSWKLVANLPYSVASPILVD 129
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L +V+ LQ E A RLV + +Y +++ + Y EP+ FK+P FFP
Sbjct: 130 LAQSKGCPRMMVVTLQLEVARRLVAQT-DDDDYGVLSLLIQLYYEPQGHFKIPSDCFFPA 188
Query: 297 PKVDAAVVTFKLKQATDYPAVTS--TKSFFSMVSSAFNGKRKMLRKSLQH 344
P VD+A V K ++ P +TS +F +V A + +RKM+ K L+
Sbjct: 189 PDVDSACVVLKRREQ---PLLTSELNDAFARLVKLALSQRRKMMLKLLKQ 235
>gi|139473080|ref|YP_001127795.1| dimethyladenosine transferase [Streptococcus pyogenes str.
Manfredo]
gi|62900490|sp|Q5XDX4.2|RSMA_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|166221708|sp|A2RCH2.1|RSMA_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|134271326|emb|CAM29544.1| dimethyladenosine transferase [Streptococcus pyogenes str.
Manfredo]
Length = 290
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 19/269 (7%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEIKDEDFFFRVSRLSFVHRRK 235
Query: 337 MLRKSL-------QHLCTSLEIEKALGDV 358
L +L + + T LE AL D+
Sbjct: 236 TLWNNLTSHFGKSEDIKTKLEKGLALADI 264
>gi|398967697|ref|ZP_10682047.1| dimethyladenosine transferase [Pseudomonas sp. GM30]
gi|398144458|gb|EJM33290.1| dimethyladenosine transferase [Pseudomonas sp. GM30]
Length = 272
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + + D +LEIGPG G+LT +LN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSISAKPDDRMLEIGPGQGALTAGILNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNTLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKQLLSNAEIEAA 238
>gi|50913600|ref|YP_059572.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10394]
gi|50902674|gb|AAT86389.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10394]
Length = 298
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 19/269 (7%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 187 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEIKDEDFFFRVSRLSFVHRRK 243
Query: 337 MLRKSL-------QHLCTSLEIEKALGDV 358
L +L + + T LE AL D+
Sbjct: 244 TLWNNLTSHFGKSEDIKTKLEKGLALADI 272
>gi|398937173|ref|ZP_10667212.1| dimethyladenosine transferase [Pseudomonas sp. GM41(2012)]
gi|398167156|gb|EJM55236.1| dimethyladenosine transferase [Pseudomonas sp. GM41(2012)]
Length = 272
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 127/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A + D +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRAIRAKPEDRLLEIGPGQGALTQGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FAS + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFASKSNFSLHQGDALKFD--------FTSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNASLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|393773415|ref|ZP_10361813.1| dimethyladenosine transferase [Novosphingobium sp. Rr 2-17]
gi|392721295|gb|EIZ78762.1| dimethyladenosine transferase [Novosphingobium sp. Rr 2-17]
Length = 274
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 135/246 (54%), Gaps = 22/246 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++L+ ++ D++AA EG VLE+GPG G LT LL AGA V AIE D+ +
Sbjct: 20 KALGQNFLLDEQLLDRIAAIPGSLEGQDVLEVGPGPGGLTRALLRAGANVTAIEMDRRCL 79
Query: 177 GLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ E A+ +LKV++ D +K +LF+ G +V+N+P+N+ T +
Sbjct: 80 PALAELEAAFPGKLKVIEGDALKIDPA----TLFD------GPYHIVSNLPYNVGTVLFT 129
Query: 236 QLLPMGDI----FSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
L G+ ++ + L+ QEE A R+V EP TS Y + + + S+ + KV R
Sbjct: 130 GWL-SGETWPPQWASLTLMFQEEVARRIVSEPD--TSAYGRLAVLAQWRSKAKLAMKVHR 186
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
+ F P PKV +A+V + A PA S + + +AF +RKMLR+S++ L +L
Sbjct: 187 SAFTPPPKVMSAIVHVEPATA---PAGVSMRMLERLTEAAFGQRRKMLRQSVKGLPGALL 243
Query: 351 IEKALG 356
+ LG
Sbjct: 244 ALETLG 249
>gi|319654955|ref|ZP_08009029.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2]
gi|317393380|gb|EFV74144.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2]
Length = 292
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 130/247 (52%), Gaps = 19/247 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ A + E +EIGPG G+LT L VLA E DQ +
Sbjct: 23 KKSLGQNFLIDTNILRRIVDHADLSEESGAIEIGPGIGALTEQLARRSKKVLAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + + ++ ED +K +++ + FE VVAN+P+ ++T +I
Sbjct: 83 LPILEETLSPYPHVSIINEDVLKADVKTAIEQEFE----GINDIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V +LQ+E A R+ P T EY ++I V +Y+E E VP+T F
Sbjct: 139 KLLEDKLPIRGIVCMLQKEVADRISARPG--TKEYGSLSIAVQYYTEAETAMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-----------Q 343
PQP VD+AV+ K+ AV S FF + ++F +RK L +L +
Sbjct: 197 PQPNVDSAVIKLT-KRKEPAVAVKSESFFFKVTKASFAQRRKTLLNNLTSQLPGGKQKKE 255
Query: 344 HLCTSLE 350
H+ ++LE
Sbjct: 256 HILSALE 262
>gi|255025830|ref|ZP_05297816.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-003]
Length = 295
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 133/252 (52%), Gaps = 7/252 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIAEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244
Query: 343 QHLCTSLEIEKA 354
+L+ KA
Sbjct: 245 ASKFPALKPRKA 256
>gi|422850037|ref|ZP_16896713.1| dimethyladenosine transferase [Streptococcus sanguinis SK115]
gi|325688925|gb|EGD30933.1| dimethyladenosine transferase [Streptococcus sanguinis SK115]
Length = 290
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLSDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ ++ PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRRER---PAVEVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|291542930|emb|CBL16040.1| dimethyladenosine transferase [Ruminococcus bromii L2-63]
Length = 284
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 143/271 (52%), Gaps = 16/271 (5%)
Query: 103 ATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
TIK + S+ F KSLGQ++++N + ++A + EG V+E+GPG G LT L +
Sbjct: 8 GTIKDILSRHGFTFSKSLGQNFLINPSVCPRMAELSGAGEGVGVIEVGPGIGVLTTELCS 67
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A+E D+ ++ ++ E + D +KV+ +D +K + + F+ G V
Sbjct: 68 LADKVVAVELDKRLLPVLEETLSEYDNVKVVNDDILKIDLHKLIEEEFQ------GMDVV 121
Query: 222 V-ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
V AN+P+ I++ VI +LL + +++Q+E A R+ E R S + + VN+Y
Sbjct: 122 VCANLPYYITSPVIMKLLEDRLPICAITVMVQKEAAQRICAEVGSRAS--GAVTVSVNYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKML 338
+EPE F V +F P PKVD+AV +L + P V K FF +V +AF+ +RK L
Sbjct: 180 AEPEMLFSVSAGSFMPAPKVDSAV--LRLNILKEPPVKVDDEKKFFKVVKAAFSQRRKTL 237
Query: 339 RKSLQHLCT--SLEIEKALGDVGLPATAAAD 367
SL + E+ L + +P A A+
Sbjct: 238 SNSLASGLSLPKAEVNAILDNSSVPLNARAE 268
>gi|160894460|ref|ZP_02075236.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50]
gi|156863771|gb|EDO57202.1| dimethyladenosine transferase [Clostridium sp. L2-50]
Length = 287
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 138/253 (54%), Gaps = 15/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + ++ AA + + D+VLEIGPG G++T L + V+A+E D+++
Sbjct: 22 QKKFGQNFLIDDHVITKIINAAEITKDDLVLEIGPGIGTMTQYLAESAGKVIAVEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + ++ ED +K I L E KVVAN+P+ I+T +I
Sbjct: 82 IPILGETLAEYDNVTIINEDILKLDIN----RLVEEENDGKPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P + +Y +++ V +Y++P VP F
Sbjct: 137 GLFESHVPLQSITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYAKPYIAANVPPNCFI 194
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSF-FSMVSSAFNGKRKMLRKSLQHL----CTSL 349
P+P V +AV+ +L + + P + +S F ++ ++FN +RK L+ + + +
Sbjct: 195 PRPGVGSAVI--RLTRYEEPPVMVKDESLMFKLIRASFNQRRKTLQNGIANSPELPYSKA 252
Query: 350 EIEKALGDVGLPA 362
++EKAL +GL A
Sbjct: 253 QVEKALEKMGLAA 265
>gi|422414618|ref|ZP_16491575.1| dimethyladenosine transferase [Listeria innocua FSL J1-023]
gi|313625508|gb|EFR95235.1| dimethyladenosine transferase [Listeria innocua FSL J1-023]
Length = 295
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 12/263 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ D ++V+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSNYDNVRVVHNDVLKADVAEVITEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244
Query: 343 QHLCTSL-----EIEKALGDVGL 360
+L E+ + L +G+
Sbjct: 245 ASKFPALKPRKEELVEGLNAIGI 267
>gi|333922301|ref|YP_004495881.1| ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333747862|gb|AEF92969.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 296
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 130/228 (57%), Gaps = 3/228 (1%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ++++++ I D++ AA + E D+ EIGPG G LT L VLA+E DQ++
Sbjct: 22 RKALGQNFLMDANIIDKIVRAANLSENDLAFEIGPGLGVLTRRLAQEAGRVLAVEIDQNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTDVI 234
+ ++ E A + +V+Q D K + + G A K+VAN+P+ I+T ++
Sbjct: 82 LPILNETLADLPNAEVIQADARKVDFDQLAAERTQGQFGPGGKAYKLVANLPYYITTPLL 141
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G +V+++Q+E A RL + S +Y +++ V +Y+ PE KVP+T F+
Sbjct: 142 LHLLTSGFNLELLVVMIQKEVADRL-QASPGGKDYGSLSVVVQYYTVPEIVCKVPKTVFY 200
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P P VD+AV+ ++ + + ++FF +V +AF +RK L +L
Sbjct: 201 PVPDVDSAVIRLT-RRPVPPVQLRNEETFFKVVRAAFGQRRKTLINAL 247
>gi|381152828|ref|ZP_09864697.1| dimethyladenosine transferase [Methylomicrobium album BG8]
gi|380884800|gb|EIC30677.1| dimethyladenosine transferase [Methylomicrobium album BG8]
Length = 267
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 14/239 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ +S + + A ++ G +EIGPG G+LT LL AGA + IE D+++
Sbjct: 6 RKRFGQNFLHDSSVIRHIIACLDIRSGQHWVEIGPGQGALTEPLLQAGARLDVIELDRNL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V L++++FA L + D +K S + ER ++V N+P+NIST ++
Sbjct: 66 VALLKKKFAGRPHLGIHSADALKFDFSS-LAEQGER-------LRIVGNLPYNISTPLMF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL D ++ +LQ+E RL EP +Y +++ + +Y E E+ F VP +F
Sbjct: 118 HLLNSADCIEDMHFMLQKEVVDRLCAEPG--NKQYGRLSVMMRYYCETEHLFDVPPESFD 175
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
P PKV +++V +L P + ST +V+ AF+ +RK LR SL++L + +++
Sbjct: 176 PVPKVMSSIV--RLTPHRRPPVRIGSTDKLNRIVTQAFSQRRKTLRNSLKNLLSDSDLD 232
>gi|58336557|ref|YP_193142.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM]
gi|227903108|ref|ZP_04020913.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796]
gi|62900454|sp|Q5FMG3.1|RSMA_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|58253874|gb|AAV42111.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM]
gi|227869094|gb|EEJ76515.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796]
Length = 294
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 131/247 (53%), Gaps = 14/247 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA +Q GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K+L +D +K ++ + F+ ++ KVVAN+P+
Sbjct: 85 PEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L FS + L++Q+E A RL E EY P+ I V + +V
Sbjct: 141 ITTPIIFALSESDLHFSSLTLMMQKEVAERL-EAKPGNKEYGPLTISVQTEMNVKIALEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
T+F P+PKVD++VV L + P + + K F +V F+ +RK L +L+ L +
Sbjct: 200 KSTSFMPRPKVDSSVVV--LTPLQERPKIENRKHFIWVVKMCFSQRRKTLNNNLKALIPN 257
Query: 349 LEIEKAL 355
+ +AL
Sbjct: 258 AKEREAL 264
>gi|423100963|ref|ZP_17088667.1| dimethyladenosine transferase [Listeria innocua ATCC 33091]
gi|370792499|gb|EHN60366.1| dimethyladenosine transferase [Listeria innocua ATCC 33091]
Length = 295
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 12/263 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ D ++V+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSNYDNVRVVHNDVLKADVAEVITEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244
Query: 343 QHLCTSL-----EIEKALGDVGL 360
+L E+ + L +G+
Sbjct: 245 ASKFPALKPRKEELVEGLNAIGI 267
>gi|422420775|ref|ZP_16497728.1| dimethyladenosine transferase, partial [Listeria seeligeri FSL
S4-171]
gi|313639861|gb|EFS04574.1| dimethyladenosine transferase [Listeria seeligeri FSL S4-171]
Length = 284
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K + + S F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIASQFTKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAQVNDEAFFFEVTRASFAQRRKTLWNNL 244
>gi|168205777|ref|ZP_02631782.1| dimethyladenosine transferase [Clostridium perfringens E str.
JGS1987]
gi|168209755|ref|ZP_02635380.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC
3626]
gi|168217634|ref|ZP_02643259.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239]
gi|170662648|gb|EDT15331.1| dimethyladenosine transferase [Clostridium perfringens E str.
JGS1987]
gi|170712059|gb|EDT24241.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC
3626]
gi|182380335|gb|EDT77814.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239]
Length = 285
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A V E D+V+EIGPG G+LT LL V+AIE D ++
Sbjct: 24 KSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQLLKRAKRVVAIELDSSLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + +++ D +K F + K+VAN+P+ ++T +I
Sbjct: 84 PILTAELGDNPKFQLIHNDALKVD--------FNEIIGAEKSVKLVANLPYYVTTPIIVN 135
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ EP+ + +Y ++I V +Y + KVP + F P
Sbjct: 136 LLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYYCNTKIVRKVPPSCFIP 193
Query: 296 QPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EK 353
+PKVD+ V+ +L++ + V + K FF +V AFN +RK L + +++ E+ EK
Sbjct: 194 RPKVDSIVIRLERLEEPS--VKVKNEKLFFEIVRHAFNMRRKTLWNATKNVKLPKELMEK 251
Query: 354 ALGDVGL 360
A +VG+
Sbjct: 252 AYEEVGI 258
>gi|379727742|ref|YP_005319927.1| dimethyladenosine transferase [Melissococcus plutonius DAT561]
gi|376318645|dbj|BAL62432.1| dimethyladenosine transferase [Melissococcus plutonius DAT561]
Length = 294
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 127/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A A + + V+E+GPG G+LT L VLA E D ++
Sbjct: 25 KKSLGQNFLTEPNILKKIVATANLTKEVNVIEVGPGIGALTEQLAQQAGQVLAFEIDHNL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + S + + ++ +D +K + ++F++ K+VAN+P+ I+T ++
Sbjct: 85 IRILADTLQSYNNITIVNQDVLKTDLVKETQAVFQQAYP----IKIVANLPYYITTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L I E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 YFLQSDLIVEEMVVMMQKEVADRISAKPG--TKAYGSLSIAVQYFMEATIAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+AV+ ++++ V + K FF + +AF +RK L +L H
Sbjct: 199 PQPNVDSAVIKL-IRRSKPIVDVINEKEFFKLTRAAFQLRRKTLWNNLLHF 248
>gi|289433536|ref|YP_003463408.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289169780|emb|CBH26316.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 295
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K + + S F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIASQFTKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAQVNDESFFFEVTRASFAQRRKTLWNNL 244
>gi|428779714|ref|YP_007171500.1| dimethyladenosine transferase [Dactylococcopsis salina PCC 8305]
gi|428693993|gb|AFZ50143.1| dimethyladenosine transferase [Dactylococcopsis salina PCC 8305]
Length = 281
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 143/261 (54%), Gaps = 23/261 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + DQ+ AA+ D VLEIG GTG LT LL + +TV+A+E D+
Sbjct: 7 PRKQFAQHWLKSEKALDQIIETAALNSEDAVLEIGAGTGILTRRLLLSASTVVAVEIDRD 66
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++++F + + L +L+ DF+K + S + S KVVANIP+NI+ ++
Sbjct: 67 LIKKLKQKFQTEEHLLLLEGDFLKLDLASLV---------SPTPRKVVANIPYNITAPIL 117
Query: 235 KQLLPMGDI------FSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL G I + ++VLL+Q+E A R+ S + + +++ + + E+ V
Sbjct: 118 EKLL--GSIAHPEQKYEKIVLLVQKEIADRICANS-GSKTFGGLSVRSQYLAACEFISIV 174
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
P F P PKVD+A+++ + +P ++ F ++ F +RKMLR +L+ + +
Sbjct: 175 PAKAFSPAPKVDSAIISLTPR---PFPLPANSPQFLEQLIKLGFANRRKMLRNNLKSMIS 231
Query: 348 SLEIEKALGDVGL-PATAAAD 367
+++ L + + P A D
Sbjct: 232 PQQLQPILEQLEISPLVRAED 252
>gi|21909726|ref|NP_663994.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS315]
gi|28895107|ref|NP_801457.1| dimethyladenosine transferase [Streptococcus pyogenes SSI-1]
gi|342179306|sp|P0DF12.1|RSMA_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|342179307|sp|P0DF13.1|RSMA_STRPQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|21903910|gb|AAM78797.1| putative dimethyladenosine transferase [Streptococcus pyogenes
MGAS315]
gi|28810352|dbj|BAC63290.1| putative dimethyladenosine transferase [Streptococcus pyogenes
SSI-1]
Length = 290
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 142/272 (52%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ V FF + +F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-MRRDQPLIEVKDEDFFFRVSRLSFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S +I KA + GL A AD K
Sbjct: 238 WNNLTSHFGKSEDI-KAKLEKGL---ALADIK 265
>gi|291537682|emb|CBL10794.1| dimethyladenosine transferase [Roseburia intestinalis M50/1]
gi|291537815|emb|CBL10926.1| dimethyladenosine transferase [Roseburia intestinalis XB6B4]
Length = 290
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 136/255 (53%), Gaps = 17/255 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + +++ AA V + D VLEIGPG G++T L V A+E D ++
Sbjct: 22 QKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTMTQYLCENAREVTAVEIDTNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + V+ +D +K I + ++ KVVAN+P+ I+T +I
Sbjct: 82 IPILEDTLSAYDNVTVINQDILKLDI-----AKLAMERNGGKPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V FY++P+ VP F
Sbjct: 137 GLFESHVPIDSITVMVQKEVADRMQVGPG--TKDYGALSLAVQFYAKPQIVANVPPNCFM 194
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQ-----HLCTS 348
P+P V +AV+ +L + + P V K F ++ ++FN +RK L L HL
Sbjct: 195 PRPNVGSAVI--RLTRHEEVPVQVDDEKLMFHIIRASFNQRRKTLANGLSNAPQVHLSKE 252
Query: 349 LEIEKALGDVGLPAT 363
EI++ + ++G P T
Sbjct: 253 -EIQECIAELGEPLT 266
>gi|148242414|ref|YP_001227571.1| dimethyladenosine transferase [Synechococcus sp. RCC307]
gi|166221711|sp|A5GTK9.1|RSMA_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|147850724|emb|CAK28218.1| Dimethyladenosine transferase [Synechococcus sp. RCC307]
Length = 274
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 135/257 (52%), Gaps = 20/257 (7%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIE 170
G RK GQH++ + + ++ AAAA+Q D VLE+GPG G+LT LL + A+V A+E
Sbjct: 5 GHHARKRFGQHWLKDESVLQRIVAAAALQPDDHVLEVGPGRGALTAQLLASPAASVQAVE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ +V +++RFA+ + ++ D + L ERR + KVVANIP+NI+
Sbjct: 65 LDRDLVAGLQQRFAAEPRFQLQSGDVLAL----PQLGDGERRPT-----KVVANIPYNIT 115
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRT--SEYRPINIFVNFYSEPE 283
++++L+ P+ + +VLL+Q+E A R+ S R S + +++ + +
Sbjct: 116 GPLLERLVGRLDRPVEPPYQRLVLLVQQEVARRI---SARAGQSSFSALSVRMQLLAHCR 172
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
VP F P PKV + V++ A P K ++ AF+ +RKM+R +L
Sbjct: 173 SVCPVPPRCFQPPPKVQSEVISLDPLPADQRPPQAVAKQVEHLLRLAFSARRKMVRNTLA 232
Query: 344 HLCTSLEIEKALGDVGL 360
++ +E L D GL
Sbjct: 233 SAAPAVGLEVWLADAGL 249
>gi|422822520|ref|ZP_16870713.1| dimethyladenosine transferase [Streptococcus sanguinis SK353]
gi|422847622|ref|ZP_16894305.1| dimethyladenosine transferase [Streptococcus sanguinis SK72]
gi|324989790|gb|EGC21733.1| dimethyladenosine transferase [Streptococcus sanguinis SK353]
gi|325686620|gb|EGD28646.1| dimethyladenosine transferase [Streptococcus sanguinis SK72]
Length = 290
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPR F P P VD+A++ ++ PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRKVFVPAPNVDSAILKMVRRE---RPAVEVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|223934090|ref|ZP_03626038.1| dimethyladenosine transferase [Streptococcus suis 89/1591]
gi|386585035|ref|YP_006081438.1| dimethyladenosine transferase [Streptococcus suis D9]
gi|223897236|gb|EEF63649.1| dimethyladenosine transferase [Streptococcus suis 89/1591]
gi|353737181|gb|AER18190.1| dimethyladenosine transferase [Streptococcus suis D9]
Length = 290
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ +V FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPLVSVKDEDFFFRVSKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIE----KALGDVGLPAT 363
+L H S E++ +ALG L A+
Sbjct: 238 WNNLTNHFGKSEEVKDKLTQALGMAELEAS 267
>gi|16799304|ref|NP_469572.1| dimethyladenosine transferase [Listeria innocua Clip11262]
gi|27151588|sp|Q92F79.1|RSMA_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|16412646|emb|CAC95460.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
innocua Clip11262]
Length = 295
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ D ++V+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSNYDNVRVVHNDVLKADVAEVITEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244
>gi|383479414|ref|YP_005388308.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS15252]
gi|383493339|ref|YP_005411015.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS1882]
gi|378927404|gb|AFC65610.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS15252]
gi|378929067|gb|AFC67484.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS1882]
Length = 290
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 144/274 (52%), Gaps = 17/274 (6%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMMRR---DQPLIEVEDEDFFFRVSRLSFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
L +L H S +I KA + GL A AD K
Sbjct: 236 TLWNNLTSHFGKSEDI-KAKLEKGL---ALADIK 265
>gi|342733124|ref|YP_004771963.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456492|ref|YP_005669090.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417959035|ref|ZP_12601906.1| Ribosomal RNA adenine methylase transferase-like protein
[Candidatus Arthromitus sp. SFB-1]
gi|417966699|ref|ZP_12608001.1| dimethyladenosine transferase [Candidatus Arthromitus sp. SFB-5]
gi|417967856|ref|ZP_12608915.1| dimethyladenosine transferase [Candidatus Arthromitus sp. SFB-co]
gi|418015470|ref|ZP_12655035.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373383|ref|ZP_12965472.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330579|dbj|BAK57221.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505805|gb|EGX28099.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984838|dbj|BAK80514.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380334329|gb|EIA24759.1| Ribosomal RNA adenine methylase transferase-like protein
[Candidatus Arthromitus sp. SFB-1]
gi|380340167|gb|EIA28794.1| dimethyladenosine transferase [Candidatus Arthromitus sp. SFB-5]
gi|380340644|gb|EIA29215.1| dimethyladenosine transferase [Candidatus Arthromitus sp. SFB-co]
gi|380341219|gb|EIA29712.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 277
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 10/250 (4%)
Query: 103 ATIKALNSKGRFPRKS-LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+++ L K F K LGQ++ N + +++ + + DIV+EIGPG G LT LL
Sbjct: 2 TSVRELQRKYGFLFKGYLGQNFFNNDILLNEILDKLDITKNDIVIEIGPGFGVLTEKLLL 61
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V++IE D ++ ++ E D K++ DF+K ++ E + +G KV
Sbjct: 62 KSKKVISIEIDDRLIPILNENLKEYDNFKLIHNDFMKMNL--------EDLGNLNGRFKV 113
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSE 281
VANIP+ I+T ++++L + +++Q+E R++ ++ T EY +++FVN++S
Sbjct: 114 VANIPYYITTPILEKLFKSELSIDFIAIMVQKEVGNRIL-ANVSTKEYGSLSVFVNYFSV 172
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
P +P NF P+PKVD+ + F++ + +F V F+ +RK L
Sbjct: 173 PHVVKYIPAVNFIPKPKVDSVFIKFEILDNRKFENREIEDNFLKFVKRCFSMRRKTLYNV 232
Query: 342 LQHLCTSLEI 351
L + EI
Sbjct: 233 LSNFTKDKEI 242
>gi|170755195|ref|YP_001779707.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra]
gi|259494244|sp|B1ID54.1|RSMA_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|169120407|gb|ACA44243.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra]
Length = 275
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K + L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKINFN----ELMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIP 185
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E
Sbjct: 186 KPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMEN 243
Query: 354 ALGDVGL 360
A G+
Sbjct: 244 AFERAGI 250
>gi|409122189|ref|ZP_11221584.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Gillisia sp. CBA3202]
Length = 289
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%)
Query: 101 YHATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
Y +A N+ G +K LGQH++ + I ++A + + VLEIGPG G LT L
Sbjct: 21 YAPGKEAFNTDGDVRAKKHLGQHFLTDESIAGKIADSLGFEGYKNVLEIGPGMGVLTKYL 80
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ + IE D+ V + E + ++ K+L++DF+K I +FER +
Sbjct: 81 IKKDIDLHVIEIDRDSVAYLGENYPQLEG-KILEKDFLKTDIS----EIFEREPYA---- 131
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
++ N P+NIST ++ + L ++ E + Q+E ALR+ P + Y +++ +
Sbjct: 132 -IIGNFPYNISTQIVFKTLENRELIPEFSGMFQKEVALRIAAPHGNKT-YGILSVLAQAF 189
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
E +Y F VP T F P PKVD+ V+ +LK+ ++ FF +V +AF +RK LR
Sbjct: 190 YEVDYLFTVPPTVFNPPPKVDSGVI--RLKRKENFTLTCDEALFFRVVKTAFQQRRKTLR 247
Query: 340 KSLQ 343
SL+
Sbjct: 248 NSLK 251
>gi|322373748|ref|ZP_08048284.1| dimethyladenosine transferase [Streptococcus sp. C150]
gi|321278790|gb|EFX55859.1| dimethyladenosine transferase [Streptococcus sp. C150]
Length = 290
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 134/258 (51%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D +KV+ ED +K +++ + K+ +
Sbjct: 65 AENAAEVMAFEIDERLVPILEDTLRDHDNIKVINEDVLKADLQTRVKEF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VP T F P P VD+A++ ++ V FF + +F +RK L
Sbjct: 179 YMTAKVAFVVPHTVFVPAPNVDSAILKMTRREQP-LVEVKDEDFFFRVSKISFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKAKL 255
>gi|339634696|ref|YP_004726337.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella koreensis KACC 15510]
gi|338854492|gb|AEJ23658.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella koreensis KACC 15510]
Length = 297
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 133/258 (51%), Gaps = 18/258 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + A V + D V+EIGPG G+LT L A V+
Sbjct: 18 MNQYGINTKKSLGQNFLTDLNILKNIVLAGNVTKDDNVIEIGPGIGALTEQLARAAKEVV 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D+ ++ ++ + + D +K++ +D +K + S ++ E S K+VAN+P+
Sbjct: 78 AFEIDERLISVLGDTLSPYDNIKIINQDILKVDLMS---AVQENFTDPSAPLKIVANLPY 134
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T ++ Q+L G +V+++Q+E A RL EP T EY +++ V + + F
Sbjct: 135 YITTPILMQILESGIEVDAIVVMMQKEVADRLAAEPG--TKEYGSLSLTVQYRVQARVAF 192
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL---- 342
V RT+F P P VD+A+V + ++ + + + F + F +RK L +L
Sbjct: 193 YVDRTSFIPNPNVDSAIVVLEPREPLEILP-DNEQRLFKLFKIGFAMRRKTLWNNLTTAF 251
Query: 343 -------QHLCTSLEIEK 353
L +LEI K
Sbjct: 252 GKNGGMQDKLLDALEISK 269
>gi|398853804|ref|ZP_10610396.1| dimethyladenosine transferase [Pseudomonas sp. GM80]
gi|398238421|gb|EJN24150.1| dimethyladenosine transferase [Pseudomonas sp. GM80]
Length = 272
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + + D +LEIGPG G+LT LLN+G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSISAKPDDRLLEIGPGQGALTAGLLNSGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNTLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKQLLSNAEIEAA 238
>gi|421144862|ref|ZP_15604766.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
gi|395488754|gb|EJG09605.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
Length = 264
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 138/254 (54%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N +EI +++ + + E D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKNEILNKIIEVSNINENDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+ + ++ D ++ +R ++ KS+ KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSPKENYTLVIGDVLEVDLRKYI------NKST----KVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S + E + + V +Y E +Y F +PR F+
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKSGK--ERGILTLAVEYYGESKYLFTIPREFFY 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLTTLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + + A+
Sbjct: 234 ILNQIEVSENERAE 247
>gi|220935881|ref|YP_002514780.1| dimethyladenosine transferase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219997191|gb|ACL73793.1| dimethyladenosine transferase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 267
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 10/245 (4%)
Query: 110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAI 169
S+ PRK GQH++ + I +++ AA A + G+ ++EIGPG G+LT LL + +
Sbjct: 2 SESHIPRKRFGQHFLHETAIIERMVAAIAPRPGEALVEIGPGLGALTAPLLERCRVLHVV 61
Query: 170 EKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
E D+ ++ + ER + +L+V Q D ++ F G +VV N+P+NI
Sbjct: 62 ELDRDVIPPLVERCQGLGELRVHQADALRFD--------FATLAPEGGQLRVVGNLPYNI 113
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
ST +I LL ++ LLQ+E RL + T +Y +++ ++ E F+V
Sbjct: 114 STPLIFHLLKSAPRIRDMHFLLQKEVVDRLAA-APNTRDYGRLSVMTQYHCRAEALFRVG 172
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P PKVD+A V + +PA F S+V+ AF +RK LR +++ + +
Sbjct: 173 PGAFRPPPKVDSAYVRLTPWETLPHPAADEAL-FASLVNQAFTQRRKTLRNAVRGMADAD 231
Query: 350 EIEKA 354
IE A
Sbjct: 232 TIEAA 236
>gi|429247034|ref|ZP_19210310.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum CFSAN001628]
gi|428755887|gb|EKX78482.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum CFSAN001628]
Length = 278
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 19 KNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K + L E + S K+VAN+P+ ++T +I +
Sbjct: 79 PILQEELKEYNNFTLIHKDALKINFN----ELMENKDS----IKLVANLPYYVTTPIISR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P
Sbjct: 131 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIP 188
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E
Sbjct: 189 KPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMEN 246
Query: 354 ALGDVGL 360
A G+
Sbjct: 247 AFERAGI 253
>gi|300114051|ref|YP_003760626.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113]
gi|299539988|gb|ADJ28305.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113]
Length = 264
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 12/245 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G RK GQH++ + ++ ++L A + GD+++EIGPG G+LT LL+ +
Sbjct: 1 MNLLGHRARKRFGQHFLHDQQVIERLIRAIKPKLGDLMVEIGPGQGALTLPLLHCLGQLE 60
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
AIE D+ + + ER AS L++ D + R+ L+ RR +VV N+P+
Sbjct: 61 AIELDRDLAAYLIERCASEGNLRLHNVDSLTFDFRT--LAHDNRR------LRVVGNLPY 112
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
NIST ++ LL I ++ +LQ E RL +P +Y +++ V FY E E F
Sbjct: 113 NISTPLLFHLLGQVGILEDMHFMLQREVVTRLAAKPG--GKDYGRLSVMVQFYCEVEPLF 170
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V F P PKVD+ VV + Q + P + S ++ +VS AF+ +RK L +L+ L
Sbjct: 171 TVKSGAFVPPPKVDSMVVRLRPHQPSLAPNI-SHEALNRVVSQAFSQRRKTLANALKGLL 229
Query: 347 TSLEI 351
+S E+
Sbjct: 230 SSAEL 234
>gi|295094395|emb|CBK83486.1| dimethyladenosine transferase [Coprococcus sp. ART55/1]
Length = 287
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 139/254 (54%), Gaps = 15/254 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ +AA + + D VLEIGPG G++T L + V+A+E D+++
Sbjct: 22 QKKFGQNFLIDAHVINKIISAADITKDDCVLEIGPGIGTMTQYLAESAGQVVAVEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + ++ +D +K I + E R KVVAN+P+ I+T +I
Sbjct: 82 LPILDETLAEYDNVTIINDDILKVDIN----KIVEERNGGRPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L V +++Q+E A R+ V P T +Y +++ V +Y+EP VP F
Sbjct: 137 GLFEKHVPLLSVTVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAEPYIVANVPPNCFI 194
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHLC----TSL 349
P+P V +AV+ +L + + P V + F ++ ++FN +RK L+ + + T
Sbjct: 195 PRPGVGSAVI--RLNRYQEPPVKVKDEQLMFRLIRASFNQRRKTLQNGIANSGELSFTKE 252
Query: 350 EIEKALGDVGLPAT 363
+I KAL +G+ A
Sbjct: 253 QIAKALESLGISAN 266
>gi|399046071|ref|ZP_10738608.1| dimethyladenosine transferase [Brevibacillus sp. CF112]
gi|398055856|gb|EJL47906.1| dimethyladenosine transferase [Brevibacillus sp. CF112]
Length = 298
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 142/260 (54%), Gaps = 26/260 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I + A A + + +EIGPG G+LT L A V+AIE DQ +
Sbjct: 27 KKSLGQNFLVDTNILHNIVAEADLTKDKGAIEIGPGIGALTEQLGRAAGKVMAIEIDQRL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++++ + + ++V+ D ++ +++ + F SG K VVAN+P+ ++T +
Sbjct: 87 LPILQDTLSPYENIEVVHGDVLELDLKALIAEKF------SGVEKLSVVANLPYYVTTPI 140
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+ +LL +V+++Q+E A R+ +P T +Y +++ FY+E E VP +
Sbjct: 141 LMKLLEERLPLENIVVMIQKEVAERIAAKPG--TKDYGSLSVAAQFYAETEVAMIVPASV 198
Query: 293 FFPQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL- 349
F P+P VD+AV+ K++ D P V FF +V S+F +RK L L +L L
Sbjct: 199 FIPRPNVDSAVIRLKVR---DRPPVDVDDQDVFFRVVRSSFAQRRKTL---LNNLMNGLF 252
Query: 350 ------EIEKALGDVGLPAT 363
E+ + L D+G+ T
Sbjct: 253 LKTQKDEVIQMLADIGIEPT 272
>gi|402297583|ref|ZP_10817349.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus alcalophilus ATCC 27647]
gi|401727189|gb|EJT00383.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus alcalophilus ATCC 27647]
Length = 290
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 135/250 (54%), Gaps = 12/250 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I + AAA + V+E+GPG G+LT + V++ E DQ +
Sbjct: 22 KKSLGQNFLIDTNILHNIVAAAELTPDSGVIEVGPGIGALTEQVAKKAKKVVSFEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A +++ D +K ++ + FE+ + VVAN+P+ ++T ++
Sbjct: 82 LPVLKETLAPYPHAEIIHSDVLKADLKETIEEKFEQGQD----LMVVANLPYYVTTPILM 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q E A R+ +P T EY ++I FY++ E VP + F
Sbjct: 138 KLLEEKLPIRGIVVMIQAEVAERISAKPG--TKEYGSLSIAAQFYAKAEKMMTVPASVFV 195
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL----E 350
P+PKVD+AV+ +++ V + FF + S+F +RK L +L H S E
Sbjct: 196 PKPKVDSAVLRLTIREEPPV-QVQDEEFFFKVFHSSFANRRKTLLNNLIHNLASKEQKPE 254
Query: 351 IEKALGDVGL 360
+EKAL G+
Sbjct: 255 VEKALEQAGI 264
>gi|225571219|ref|ZP_03780217.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM
15053]
gi|225160050|gb|EEG72669.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM
15053]
Length = 291
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 126/230 (54%), Gaps = 9/230 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ AA + + D+VLEIGPG G++T L A V+A+E D+++
Sbjct: 24 QKKFGQNFLIDTHVLDKIIRAADITKEDMVLEIGPGIGTMTQYLAEAAGKVVAVEIDKNL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + V+ ED +K +R R ++ KVVAN+P+ I+T +I
Sbjct: 84 IPILTDTLHDYDNVTVINEDVLKLDVRE-----LAREENGGRPLKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + +++Q+E A R+ + +Y +++ V +Y+EP VP F P
Sbjct: 139 GLFENDVPVESITVMVQKEVADRM-QTGPGNKDYGALSLAVQYYAEPYIVANVPPNCFMP 197
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
+P+V +AV+ +L + P V K F ++ ++FN +RK L L +
Sbjct: 198 RPRVGSAVI--RLTRHEKPPVEVKDEKLMFDIIRASFNQRRKTLANGLNN 245
>gi|340622337|ref|YP_004740789.1| 16S rRNA dimethylase [Capnocytophaga canimorsus Cc5]
gi|339902603|gb|AEK23682.1| 16S rRNA dimethylase [Capnocytophaga canimorsus Cc5]
Length = 255
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 127/239 (53%), Gaps = 15/239 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQH++ + I ++A ++ VLEIGPG G LT LL V IE D+
Sbjct: 7 KKHLGQHFLKDLNIAQKIADTLSLSGYSRVLEIGPGMGVLTQFLLKKDTEVHVIEIDKES 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ F ++ Q ++ +DF+K I S+ S FA V+ N P+NIS+ +I
Sbjct: 67 VSYLQKNFPTL-QNNIISDDFLKFDILSYF--------RSEPFA-VIGNFPYNISSQIIF 116
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+ L + D E + Q+E A R+ E P +T Y +++ + + EY F V F
Sbjct: 117 RTLELRDYIPEFSGMFQKEVAERICEKPGSKT--YGILSVLTQAFYKAEYLFTVSENVFN 174
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P PKV + V+ +L++ +Y K FF +V +AFN +RK LR SL+ ++ E+++
Sbjct: 175 PPPKVKSGVL--RLQRKANYHLDCDEKKFFHVVKTAFNQRRKTLRNSLKQFISNEEVKQ 231
>gi|325276041|ref|ZP_08141856.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. TJI-51]
gi|324098826|gb|EGB96857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. TJI-51]
Length = 267
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAIHAKPGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA ++ Q D +K F R KVV N+P+NIST +I
Sbjct: 70 VPILQHKFADRSNFRLHQGDALKFD--------FNRLGVPPRSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E R+ ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERMAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V + +PA + +V AFN +RK LR +++ L S IE A
Sbjct: 181 PPKVDSAIVRLVPHEVLPHPA-KDAQLLERVVRDAFNQRRKTLRNTMKGLLDSAAIEAA 238
>gi|226947305|ref|YP_002802396.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto]
gi|259494243|sp|C1FQ40.1|RSMA_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226840947|gb|ACO83613.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto]
Length = 275
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 137/249 (55%), Gaps = 15/249 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P
Sbjct: 128 LLTEKCNFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIP 185
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L + E +E
Sbjct: 186 RPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNINKESMEN 243
Query: 354 ALGDVGLPA 362
A G+ +
Sbjct: 244 AFERAGIDS 252
>gi|260893941|ref|YP_003240038.1| dimethyladenosine transferase [Ammonifex degensii KC4]
gi|260866082|gb|ACX53188.1| dimethyladenosine transferase [Ammonifex degensii KC4]
Length = 297
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 140/264 (53%), Gaps = 15/264 (5%)
Query: 103 ATIKA-LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A +KA L G PRK GQH+++ E+ ++ AA + D V+E+GPG G LT LL
Sbjct: 12 AAVKAVLAEWGIKPRKRWGQHFLVRREVLAKIVEAAELSPADTVVEVGPGLGVLTARLLE 71
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF--A 219
V+AIE D + +R RF +L +++ D ++C + + + GF
Sbjct: 72 KAGKVVAIELDPRLEAFLRARFGEHPRLTLVRGDALECDFDLLV-------QEARGFFPY 124
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ +++ ++ +LL S +VL+LQ+E ALRL+ S T EY +++ V +
Sbjct: 125 KVVANLPYYLTSPLLLRLLTSPWRISLLVLMLQKEVALRLLA-SPGTKEYGSLSLLVQYR 183
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ P V R +F+P P+VD+AVV +++ V FF +V +AF +RK L
Sbjct: 184 TLPSLVTFVSRHSFYPPPEVDSAVVRLEVRTRPSV-EVGDESVFFGVVRAAFAKRRKTLL 242
Query: 340 KSLQHLCTSL---EIEKALGDVGL 360
+L L E ++ L D G+
Sbjct: 243 NALTSSSLGLSKEEWQRLLLDAGI 266
>gi|170723958|ref|YP_001751646.1| dimethyladenosine transferase [Pseudomonas putida W619]
gi|169761961|gb|ACA75277.1| dimethyladenosine transferase [Pseudomonas putida W619]
Length = 266
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA D ++ Q D +K F + + KVV N+P+NIST +I
Sbjct: 70 VPILQHKFAGRDNFRLHQGDALKFD--------FNQLGVPARSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E R+ P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERMAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA +V AFN +RK LR +L+ L S IE A
Sbjct: 180 PPPKVDSAIVRLVPHEVLPHPA-KDHLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEAA 238
>gi|153940692|ref|YP_001389445.1| dimethyladenosine transferase [Clostridium botulinum F str.
Langeland]
gi|384460533|ref|YP_005673128.1| dimethyladenosine transferase [Clostridium botulinum F str. 230613]
gi|259494245|sp|A7G9I5.1|RSMA_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|152936588|gb|ABS42086.1| dimethyladenosine transferase [Clostridium botulinum F str.
Langeland]
gi|295317550|gb|ADF97927.1| dimethyladenosine transferase [Clostridium botulinum F str. 230613]
Length = 275
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E ++S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKES----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIP 185
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E
Sbjct: 186 RPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMEN 243
Query: 354 ALGDVGL 360
A G+
Sbjct: 244 AFERAGI 250
>gi|422759887|ref|ZP_16813649.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412722|gb|EFY03630.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 290
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 137/260 (52%), Gaps = 13/260 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 179 YMAAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKNEDFFFRVSRLSFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEIEKAL 355
L +L H S +I+ L
Sbjct: 236 TLWNNLTSHFGKSEDIKAKL 255
>gi|456369696|gb|EMF48596.1| Dimethyladenosine transferase [Streptococcus parauberis KRS-02109]
Length = 290
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 136/260 (52%), Gaps = 13/260 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY+ T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT +
Sbjct: 5 DYNVTRAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFI 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++++ D ++++ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILKDTLRDFDNVQLVNQDILKADLQTQIKAF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIDSKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRK 336
Y + + F VPRT F P P VD+A++ + D P AV F + ++F +RK
Sbjct: 179 YMDAKVAFIVPRTVFVPAPNVDSAILKMTRR---DQPLVAVQDEDFLFRVSKASFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEIEKAL 355
L +L H + EI+ L
Sbjct: 236 TLWNNLTSHFGKTEEIKANL 255
>gi|320547549|ref|ZP_08041834.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812]
gi|320447624|gb|EFW88382.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812]
Length = 290
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 134/262 (51%), Gaps = 13/262 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREEP-LVKVKDEDFFFRVAKISFVHRRKTL 237
Query: 339 RKSL-QHLC----TSLEIEKAL 355
+L H T ++EKAL
Sbjct: 238 WNNLISHFGKAEETKAKLEKAL 259
>gi|227888939|ref|ZP_04006744.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200]
gi|227850527|gb|EEJ60613.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200]
Length = 294
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 131/253 (51%), Gaps = 15/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS +VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VNIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V +V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
T+F P+PKVD+AVV L + P + F +V F +RK L +L+ L
Sbjct: 200 KSTSFMPRPKVDSAVVV--LTPLLEKPDINDYVFFDHVVKMCFAQRRKTLANNLKTLIKD 257
Query: 349 L-EIEKALGDVGL 360
E EK + D+GL
Sbjct: 258 KNEREKLINDLGL 270
>gi|313889811|ref|ZP_07823453.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN
20026]
gi|416852671|ref|ZP_11909816.1| dimethyladenosine transferase [Streptococcus pseudoporcinus LQ
940-04]
gi|313121856|gb|EFR44953.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN
20026]
gi|356740160|gb|EHI65392.1| dimethyladenosine transferase [Streptococcus pseudoporcinus LQ
940-04]
Length = 290
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 131/258 (50%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ E D ++V+ +D +K +++ + K+
Sbjct: 65 AEQAAEVMAFEIDDRLLPILAETLRDFDNIRVINQDILKADLQTQIQGF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ + ++ V FF + F +RK L
Sbjct: 179 YMAAKVSFIVPRTVFVPAPNVDSAILKME-RRVEPLIKVQDEDFFFRVAKVGFIHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E +K L
Sbjct: 238 WNNLTSHFGKSEETKKKL 255
>gi|154498148|ref|ZP_02036526.1| hypothetical protein BACCAP_02129 [Bacteroides capillosus ATCC
29799]
gi|150273138|gb|EDN00295.1| dimethyladenosine transferase [Pseudoflavonifractor capillosus ATCC
29799]
Length = 290
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 136/263 (51%), Gaps = 14/263 (5%)
Query: 105 IKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
IKAL + F KS+GQ++++ + +AAA+ + VLEIGPG G LT L
Sbjct: 9 IKALLGRHGFRFSKSMGQNFLIEDHVPRDIAAASGADKDCGVLEIGPGIGPLTVRLAERA 68
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+++E D+ ++ ++ E A D ++++ D +K I + + + K + A
Sbjct: 69 GRVVSVELDKALLPVLAETLAGRDNVEIVPGDIMKLDIPALVAEKMDGLKPLA-----CA 123
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+NI+T V+ L+ G F + +++Q E ALR+ + + +Y +++ +++ PE
Sbjct: 124 NLPYNITTPVLTALIEAG-CFQAITVMIQREVALRICA-APGSGDYGAFSVYCQYHTTPE 181
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
F VP F P PKV ++V+ + A + V K FF +V +AF +RK L +L
Sbjct: 182 LLFDVPPECFIPAPKVTSSVIRLVPRPAPE--EVKDEKQFFRLVRAAFAQRRKTLLNALS 239
Query: 344 HLCTSL----EIEKALGDVGLPA 362
S E+ A+ GLPA
Sbjct: 240 SAYGSQLSKDELRDAIAACGLPA 262
>gi|146309027|ref|YP_001189492.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
gi|145577228|gb|ABP86760.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
Length = 269
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 128/239 (53%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A ++G+ +LEIGPG G++T LL +GA + IE D +
Sbjct: 9 RKRFGQNFLHDAGVIDRILRAIRAKDGERLLEIGPGQGAITEGLLGSGAQLDVIELDLDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +F + ++ Q D +K F R +++ G +VV N+P+NIST +I
Sbjct: 69 IPILQGKFGDNPRFRLNQGDALKFD--------FARLEAAPGSLRVVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E R+ ++ ++I V ++ E+ F V F P
Sbjct: 121 HLLDNAPLIRDMHFMLQKEVVERMAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 179
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V + +PA + +V AFN +RK LR +L+ L + IE A
Sbjct: 180 PPKVDSAIVRLVPHEVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIEAA 237
>gi|398856717|ref|ZP_10612435.1| dimethyladenosine transferase [Pseudomonas sp. GM79]
gi|398242689|gb|EJN28296.1| dimethyladenosine transferase [Pseudomonas sp. GM79]
Length = 272
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTEGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FAS + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFASKSNFHLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNASLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|329117503|ref|ZP_08246220.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020]
gi|333905922|ref|YP_004479793.1| dimethyladenosine transferase [Streptococcus parauberis KCTC 11537]
gi|326907908|gb|EGE54822.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020]
gi|333121187|gb|AEF26121.1| dimethyladenosine transferase [Streptococcus parauberis KCTC 11537]
Length = 290
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 136/260 (52%), Gaps = 13/260 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY+ T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT +
Sbjct: 5 DYNVTRAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFI 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++++ D ++++ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILKDTLRDFDNVQLVNQDILKADLQTQIKAF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIDSKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRK 336
Y + + F VPRT F P P VD+A++ + D P AV F + ++F +RK
Sbjct: 179 YMDAKVAFIVPRTVFVPAPNVDSAILKMTRR---DQPLVAVQDEDFLFRVSKASFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEIEKAL 355
L +L H + EI+ L
Sbjct: 236 TLWNNLTSHFGKTEEIKANL 255
>gi|170761464|ref|YP_001785410.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch
Maree]
gi|259494246|sp|B1KRY8.1|RSMA_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|169408453|gb|ACA56864.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch
Maree]
Length = 275
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 134/247 (54%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLVDESVLEDIIKGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----GLMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y E KV F P
Sbjct: 128 LLKEKCDFKSLTIMIQKEVAERIDAEPNCK--EYGSLTVLVQYYCNTEIIRKVSPNCFIP 185
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E
Sbjct: 186 RPKVDSIVI--KLDRLSEPRVRVKSEKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMEN 243
Query: 354 ALGDVGL 360
A G+
Sbjct: 244 AFERAGI 250
>gi|339006655|ref|ZP_08639230.1| ribosomal RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
gi|338775864|gb|EGP35392.1| ribosomal RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
Length = 295
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 8/228 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AA + + V+EIGPG G+LT L A V+AIE DQ +
Sbjct: 26 KKSLGQNFLTDINILHNIIDAAELSKDKAVIEIGPGIGALTEQLCRAAGKVMAIEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ D +K + +L S VVAN+P+ ++T ++
Sbjct: 86 LPILEDTLSPYDNITVVHGDVLKLDVA----ALIAEHLSGCSGVSVVANLPYYVTTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G +V+++Q+E A R+ +P T +Y +++ FY+E + VP + F
Sbjct: 142 GLLESGIELDHIVVMIQKEVAERIAAKPG--TKDYGSLSVAAQFYAETSIEMIVPASVFI 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P+P VD+AV+ +++ V K FF +V ++F +RK L +L
Sbjct: 200 PRPNVDSAVIKLSIRKQP-IVEVADEKLFFRVVKASFAQRRKTLLNNL 246
>gi|116871577|ref|YP_848358.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123458009|sp|A0AEZ3.1|RSMA_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|116740455|emb|CAK19575.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 295
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAGISKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + ++V+ D +K + + F + S K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNIQVVHGDVLKADVEEVITQQFSK---SELPLKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAKVNDEEFFFEVTRASFAQRRKTLWNNL 244
>gi|403051008|ref|ZP_10905492.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acinetobacter bereziniae LMG 1003]
gi|445421605|ref|ZP_21436007.1| dimethyladenosine transferase [Acinetobacter sp. WC-743]
gi|444757573|gb|ELW82095.1| dimethyladenosine transferase [Acinetobacter sp. WC-743]
Length = 270
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 136/254 (53%), Gaps = 16/254 (6%)
Query: 105 IKALNSK--GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
I ALN K G RK GQ+++ + + ++ + A + GD ++EIGPG +LT+ L+
Sbjct: 4 INALNPKDEGHHTRKRFGQNFLHDQRVIAKIVRSVAPRTGDNIVEIGPGLAALTSPLIGE 63
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
+ +E D+ + + R ++L +++ D +K LF++ + +VV
Sbjct: 64 CDALTVVELDRDLAAGLPGRVPHPERLTIIETDALKYDFS----ELFQQDRP----LRVV 115
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSE 281
N+P+NIST ++ LL GD ++ +LQ+E R+ EP+ T EY +++ + +Y +
Sbjct: 116 GNLPYNISTPLLFHLLEFGDKVKDMHFMLQKEVVDRITAEPN--TKEYGRLSVMIQYYCK 173
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSSAFNGKRKMLRK 340
P + F+VP +F P PKV +AV F+L+ P + + K+ +VS F +RK LR
Sbjct: 174 PTFLFEVPPGSFNPPPKVTSAV--FRLEPYATKPIIAKNEKALARLVSHVFTQRRKTLRN 231
Query: 341 SLQHLCTSLEIEKA 354
SL+ + E+A
Sbjct: 232 SLKGMLVEDGFERA 245
>gi|359397687|ref|ZP_09190713.1| dimethyladenosine transferase [Novosphingobium pentaromativorans
US6-1]
gi|357600878|gb|EHJ62571.1| dimethyladenosine transferase [Novosphingobium pentaromativorans
US6-1]
Length = 280
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 127/244 (52%), Gaps = 18/244 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH-M 175
K+LGQ+++ + ++ D++AA EG VLE+GPG G LT LL AGA V AIE D+ +
Sbjct: 27 KALGQNFLFDEQLLDRIAAIPGALEGHNVLEVGPGPGGLTRALLRAGAQVTAIEMDRRCL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L A D+LKV++ D +K SLF+ G VVAN+P+N+ T +
Sbjct: 87 PALAEVEQAFPDKLKVIEGDAMKIAP----ASLFD------GPYHVVANLPYNVGTALFT 136
Query: 236 QLLPMGDI---FSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
L + + + L+ QEE A R+V + TS Y + + + S+ + KV R+
Sbjct: 137 GWLSGEEWPPQWQSLTLMFQEEVARRIVAEA-NTSAYGRLAVLAQWRSKAKLAMKVHRSA 195
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F P PKV +A+V A P S + + +AF +RKMLR+SL+ L +L
Sbjct: 196 FTPPPKVMSAIVHVTPGTA---PEGVSMRVLERVTEAAFGQRRKMLRQSLKGLPGALAAL 252
Query: 353 KALG 356
LG
Sbjct: 253 DRLG 256
>gi|357636017|ref|ZP_09133892.1| dimethyladenosine transferase [Streptococcus macacae NCTC 11558]
gi|357584471|gb|EHJ51674.1| dimethyladenosine transferase [Streptococcus macacae NCTC 11558]
Length = 290
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 129/247 (52%), Gaps = 14/247 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +K GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILDRHGFTFKKIFGQNFLTDTNILQKIVDTAEIDKNTNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ R K S A
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQT-------RIKEFSNPA 117
Query: 220 ---KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIF 275
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIA 175
Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKR 335
V +Y + F VP T F P P VD+A++ ++ + V FF + +AF +R
Sbjct: 176 VQYYMAAKLAFIVPSTVFVPAPNVDSAILKMTRREQS-LVQVQDEDFFFHLAKTAFVHRR 234
Query: 336 KMLRKSL 342
K L +L
Sbjct: 235 KTLWNNL 241
>gi|422824475|ref|ZP_16872662.1| dimethyladenosine transferase [Streptococcus sanguinis SK405]
gi|422825445|ref|ZP_16873624.1| dimethyladenosine transferase [Streptococcus sanguinis SK678]
gi|422856577|ref|ZP_16903233.1| dimethyladenosine transferase [Streptococcus sanguinis SK1]
gi|422863495|ref|ZP_16910126.1| dimethyladenosine transferase [Streptococcus sanguinis SK408]
gi|422872361|ref|ZP_16918854.1| dimethyladenosine transferase [Streptococcus sanguinis SK1087]
gi|324992524|gb|EGC24445.1| dimethyladenosine transferase [Streptococcus sanguinis SK405]
gi|324995947|gb|EGC27858.1| dimethyladenosine transferase [Streptococcus sanguinis SK678]
gi|327460748|gb|EGF07083.1| dimethyladenosine transferase [Streptococcus sanguinis SK1]
gi|327472469|gb|EGF17900.1| dimethyladenosine transferase [Streptococcus sanguinis SK408]
gi|328944611|gb|EGG38772.1| dimethyladenosine transferase [Streptococcus sanguinis SK1087]
Length = 290
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAVEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ V K FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPAAEVQDEKFFFKVSKASFVHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|402835685|ref|ZP_10884248.1| dimethyladenosine transferase [Mogibacterium sp. CM50]
gi|402273967|gb|EJU23157.1| dimethyladenosine transferase [Mogibacterium sp. CM50]
Length = 306
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 135/256 (52%), Gaps = 12/256 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + D + A + + E +V+E+GPG G+LT+ L+ V+AIE D ++
Sbjct: 41 KSLGQNFLNDQNVIDDIVAGSLIDEQTLVIEVGPGEGALTSELVEVAGYVIAIELDDRLI 100
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++R +FA D +V+ D +K I S + RK +VV N+P+ I+T +I +
Sbjct: 101 PILRTKFALHDNFEVIHGDILKADIESIVNDAM--RKHDLTRTRVVGNLPYYITTPIIIK 158
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ F + +++Q+E RL+ EP + + I V++ + V R F+P
Sbjct: 159 LIESKAEFESLTVMMQKEVGDRLLAEPGTKLAG--AITYAVHYRCTVDKICDVSREAFYP 216
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQHL--CTSLEI 351
PKVD+ V+ ++ A PA V FF + + F+ +RK L SLQ + + +I
Sbjct: 217 VPKVDSLVLRLDMRGA---PAVDVADEDRFFRCIKAGFSMRRKTLLNSLQAIDDVSREDI 273
Query: 352 EKALGDVGLPATAAAD 367
ALG V + + A+
Sbjct: 274 RMALGRVNIDPSRRAE 289
>gi|417927623|ref|ZP_12571011.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340765497|gb|EGR88023.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
Length = 290
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 144/274 (52%), Gaps = 17/274 (6%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVEDEDFFFRVSRLSFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
L +L H S +I KA + GL A AD K
Sbjct: 236 TLWNNLTSHFGKSEDI-KAKLEKGL---ALADIK 265
>gi|410595144|ref|YP_006951871.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
agalactiae SA20-06]
gi|421531780|ref|ZP_15978159.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae STIR-CD-17]
gi|403643110|gb|EJZ03902.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae STIR-CD-17]
gi|410518783|gb|AFV72927.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
agalactiae SA20-06]
Length = 290
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 134/247 (54%), Gaps = 15/247 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILADTLARFDNIQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ F+E V+++Q+E A R + T Y ++I V +Y + F VPRT F P
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYYMAAKVSFIVPRTVFVP 195
Query: 296 QPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSS-AFNGKRKMLRKSL-QHLC----TS 348
P VD+A++ + D P V+ + FF VS AF +RK L +L H T
Sbjct: 196 APNVDSAILKMVRR---DQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSHFGKSEDTK 252
Query: 349 LEIEKAL 355
++EKAL
Sbjct: 253 AKLEKAL 259
>gi|422885092|ref|ZP_16931540.1| dimethyladenosine transferase [Streptococcus sanguinis SK49]
gi|332358479|gb|EGJ36304.1| dimethyladenosine transferase [Streptococcus sanguinis SK49]
Length = 290
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAVEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ V K FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPAAEVQDEKFFFKVSKASFVHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|77409014|ref|ZP_00785733.1| dimethyladenosine transferase [Streptococcus agalactiae COH1]
gi|421147909|ref|ZP_15607581.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae GB00112]
gi|77172355|gb|EAO75505.1| dimethyladenosine transferase [Streptococcus agalactiae COH1]
gi|401685247|gb|EJS81255.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae GB00112]
Length = 290
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 136/263 (51%), Gaps = 15/263 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + A D ++V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMIQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKM 337
+ F VPRT F P P VD+A++ + D P V+ FF + AF +RK
Sbjct: 180 MTAKVSFIVPRTVFVPAPNVDSAILKMVCR---DQPVVSVQDEDFFFRVSKVAFVHRRKT 236
Query: 338 LRKSL-QHLC----TSLEIEKAL 355
L +L H T ++EKAL
Sbjct: 237 LWNNLTSHFGKSEDTKAKLEKAL 259
>gi|153931501|ref|YP_001382487.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
19397]
gi|153937047|ref|YP_001386039.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall]
gi|387816312|ref|YP_005676656.1| dimethyladenosine transferase [Clostridium botulinum H04402 065]
gi|259494241|sp|A7FQA9.1|RSMA_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|152927545|gb|ABS33045.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
19397]
gi|152932961|gb|ABS38460.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall]
gi|322804353|emb|CBZ01903.1| dimethyladenosine transferase [Clostridium botulinum H04402 065]
Length = 275
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIP 185
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E
Sbjct: 186 RPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMEN 243
Query: 354 ALGDVGL 360
A G+
Sbjct: 244 AFERAGI 250
>gi|94993613|ref|YP_601711.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10750]
gi|118600904|sp|Q1J8J4.1|RSMA_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|94547121|gb|ABF37167.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10750]
Length = 298
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 144/274 (52%), Gaps = 17/274 (6%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 187 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVEDEDFFFRVSRLSFVHRRK 243
Query: 337 MLRKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
L +L H S +I KA + GL A AD K
Sbjct: 244 TLWNNLTSHFGKSEDI-KAKLEKGL---ALADIK 273
>gi|340399677|ref|YP_004728702.1| dimethyladenosine transferase [Streptococcus salivarius CCHSS3]
gi|387760519|ref|YP_006067496.1| dimethyladenosine transferase [Streptococcus salivarius 57.I]
gi|338743670|emb|CCB94180.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Streptococcus
salivarius CCHSS3]
gi|339291286|gb|AEJ52633.1| dimethyladenosine transferase [Streptococcus salivarius 57.I]
Length = 290
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 135/262 (51%), Gaps = 13/262 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K +++ + K+S
Sbjct: 65 AENAAEVMAFEIDDRLVPILEDTLRDHDNVNVINEDVLKADLQTRVKEF----KNSELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ + Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--SKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V F + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVEVKDEDFLFRVAKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEI----EKAL 355
+L H S E+ EKAL
Sbjct: 238 WNNLTNHFGKSEEVKSKLEKAL 259
>gi|15674442|ref|NP_268616.1| dimethyladenosine transferase [Streptococcus pyogenes SF370]
gi|71910036|ref|YP_281586.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005]
gi|410679912|ref|YP_006932314.1| dimethyladenosine transferase [Streptococcus pyogenes A20]
gi|417857546|ref|ZP_12502605.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus pyogenes HKU QMH11M0907901]
gi|27151597|sp|Q9A1I0.1|RSMA_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|13621537|gb|AAK33337.1| putative dimethyladenosine transferase [Streptococcus pyogenes M1
GAS]
gi|71852818|gb|AAZ50841.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005]
gi|387934501|gb|EIK42614.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus pyogenes HKU QMH11M0907901]
gi|395454705|dbj|BAM31044.1| dimethyladenosine transferase [Streptococcus pyogenes M1 476]
gi|409692501|gb|AFV37361.1| dimethyladenosine transferase [Streptococcus pyogenes A20]
Length = 290
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 137/260 (52%), Gaps = 13/260 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVSRLSFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEIEKAL 355
L +L H S +I+ L
Sbjct: 236 TLWNNLTSHFGKSEDIKAKL 255
>gi|336065069|ref|YP_004559928.1| dimethyladenosine transferase [Streptococcus pasteurianus ATCC
43144]
gi|334283269|dbj|BAK30842.1| dimethyladenosine transferase [Streptococcus pasteurianus ATCC
43144]
Length = 290
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 132/258 (51%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQP-LVQVKDEDFFFRVSKISFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H + EI+ L
Sbjct: 238 WNNLTSHFGKADEIKAKL 255
>gi|386580878|ref|YP_006077283.1| dimethyladenosine transferase [Streptococcus suis JS14]
gi|319759070|gb|ADV71012.1| dimethyladenosine transferase [Streptococcus suis JS14]
Length = 290
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 139/270 (51%), Gaps = 13/270 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
VLA E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAGEVLAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTSILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ +V FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRREQPLVSVKDEDFFFRVSKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIE----KALGDVGLPAT 363
+L H S E++ +ALG L A+
Sbjct: 238 WNNLTNHFGKSEEVKDKLTQALGMAELEAS 267
>gi|197301323|ref|ZP_03166408.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC
29176]
gi|197299641|gb|EDY34156.1| dimethyladenosine transferase [Ruminococcus lactaris ATCC 29176]
Length = 297
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 142/262 (54%), Gaps = 15/262 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + D++ +A + + D+VLEIGPG G++T L A
Sbjct: 18 TIEVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDVVLEIGPGIGTMTQYLACAA 77
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + + + ++V+ D +K I + ++ KVVA
Sbjct: 78 KKVIAVEIDKALIPILEDTLSEYENVRVINHDVLKVDI-----AKLAEEENGGKPIKVVA 132
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y++P
Sbjct: 133 NLPYYITTPIIMGLFENHVPIKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAKP 190
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKS 341
VP F P+PKV +AV+ +L++ + P V K F ++ ++FN +RK L
Sbjct: 191 YIVANVPPNCFMPRPKVGSAVI--RLERYENPPVTVKDEKLMFRLIRASFNQRRKTLANG 248
Query: 342 LQHL----CTSLEIEKALGDVG 359
L++ T EIE A+ +G
Sbjct: 249 LKNSPELDYTKEEIEAAIEALG 270
>gi|295115506|emb|CBL36353.1| dimethyladenosine transferase [butyrate-producing bacterium SM4/1]
Length = 310
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 142/275 (51%), Gaps = 21/275 (7%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
TI+ + G +K GQ+++++ + D++ AA V D+VLEIGPG G++T L
Sbjct: 32 QKTIQIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE 91
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
+ V+A+E D +++ ++ E A D + V+ +D +K I+ L E KV
Sbjct: 92 SAKQVVAVEIDTNLIPILSETLAGYDNVTVINQDILKVDIK----KLAEEYNGGRPI-KV 146
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T +I L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 147 VANLPYYITTPIIMGLFESSVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 204
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSF-FSMVSSAFNGKRKMLR 339
EP VP F P+P V +AV+ +L + P + F ++ ++FN +RK L
Sbjct: 205 EPYIVANVPPNCFIPRPNVGSAVI--RLTRHKKPPVEVKNRDLMFKLIRASFNQRRKTL- 261
Query: 340 KSLQHLCTSLEI----EK---ALGDVGLPATAAAD 367
L L S EI EK A+ +G+PA+ +
Sbjct: 262 --LNGLNNSPEIPIGKEKIAAAIEQLGVPASVRGE 294
>gi|148378088|ref|YP_001252629.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
3502]
gi|148287572|emb|CAL81637.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
3502]
Length = 278
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 19 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 79 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P
Sbjct: 131 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIP 188
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E
Sbjct: 189 RPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMEN 246
Query: 354 ALGDVGL 360
A G+
Sbjct: 247 AFERAGI 253
>gi|88801801|ref|ZP_01117329.1| dimethyladenosine transferase [Polaribacter irgensii 23-P]
gi|88782459|gb|EAR13636.1| dimethyladenosine transferase [Polaribacter irgensii 23-P]
Length = 267
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 123/241 (51%), Gaps = 20/241 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQH++ + I +A A + D VLEIGPG G LT LL A + +E D+
Sbjct: 6 KKHLGQHFLTDESIAKNIADALSGNGYDDVLEIGPGMGILTKYLLPQKAKITVMELDRES 65
Query: 176 VGLVRERF--------ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
V + + F S VL+ DF+K +I+ +F +++ + ++ N P+
Sbjct: 66 VAYLHDTFPLEHLTLDTSAAHFSVLEGDFLKKNIQ----DIFHKKQVA-----IIGNFPY 116
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
NIST ++ + + + E + Q+E A R+ E + Y +++ + + EY F
Sbjct: 117 NISTQIVFKAIENREFVPEFAGMFQKEVAKRIAEKE-GSKVYGIMSVLTQAFFDVEYLFT 175
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
VP F P PKVD+ V+ +L + DY K FF +V +AFN +RKMLR SL+ L
Sbjct: 176 VPPDVFNPPPKVDSGVI--RLVRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSLNL 233
Query: 348 S 348
S
Sbjct: 234 S 234
>gi|94987854|ref|YP_595955.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429]
gi|94991737|ref|YP_599836.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS2096]
gi|118600901|sp|Q1JDL6.1|RSMA_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|118600902|sp|Q1JNI8.1|RSMA_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|94541362|gb|ABF31411.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429]
gi|94545245|gb|ABF35292.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS2096]
Length = 298
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 144/274 (52%), Gaps = 17/274 (6%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 187 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVSRLSFVHRRK 243
Query: 337 MLRKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
L +L H S +I KA + GL A AD K
Sbjct: 244 TLWNNLTSHFGKSEDI-KAKLEKGL---ALADIK 273
>gi|325848863|ref|ZP_08170373.1| dimethyladenosine transferase [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480507|gb|EGC83569.1| dimethyladenosine transferase [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 282
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ D++ + V G+ +LEIGPG G+++ + ++ IE D+ ++
Sbjct: 23 KSLGQNFLVDKNFVDKIIDLSEVS-GENILEIGPGIGTISQEMAKTCKKLVVIEIDKTLI 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ + ++ D +K ++ + F S F KVV+N+P+ I+T +I++
Sbjct: 82 PILKDNLGEFSNVDIINADILKTDLKKIIKENF----SGEDF-KVVSNLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L ++ +++Q+E A R+ + + +Y +++F+ +YSE +FKVP++ F PQ
Sbjct: 137 LFEEDLPCKDMTIMVQKEVADRM-KADEKEKDYSSLSVFIKYYSEITGQFKVPKSVFMPQ 195
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALG 356
PK+D+ V+ L+ Y S F++V + FN +RK + SL + +++K
Sbjct: 196 PKIDSQVLKLNLRL---YDEDVDVNSLFNIVRAGFNKRRKTILNSLSSVIEKEDLKKIFE 252
Query: 357 DVGLPATAAAD 367
++ L A+
Sbjct: 253 NLSLKENLRAE 263
>gi|457094547|gb|EMG25066.1| Dimethyladenosine transferase [Streptococcus parauberis KRS-02083]
Length = 290
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 13/260 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY+ T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT +
Sbjct: 5 DYNVTRAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFI 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++++ D ++++ +D +K + + + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILKDTLRDFDNVQLVNQDILKADLETQIKAF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIDSKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRK 336
Y + + F VPRT F P P VD+A++ + D P AV F + ++F +RK
Sbjct: 179 YMDAKVAFIVPRTVFVPAPNVDSAILKMTRR---DQPLVAVQDEDFLFRVSKASFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEIEKAL 355
L +L H + EI+ L
Sbjct: 236 TLWNNLTSHFGKTEEIKANL 255
>gi|404398415|ref|ZP_10989999.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas fuscovaginae UPB0736]
Length = 272
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRAIRAKSEDRMLEIGPGQGALTEGLLSSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FAS ++ Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 VPILNQQFASKPNFQLHQGDALKFD--------FTTLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL ++ ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNANLIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA + +V AFN +RK LR +L+ L S EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKALLGSAEIEAA 238
>gi|227873154|ref|ZP_03991445.1| dimethyladenosine transferase [Oribacterium sinus F0268]
gi|227840985|gb|EEJ51324.1| dimethyladenosine transferase [Oribacterium sinus F0268]
Length = 312
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 131/245 (53%), Gaps = 11/245 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ++++++ + D + + A +Q+ D+V+EIGPG G+LT L
Sbjct: 19 DSKETIAVLQRTNFQFKKQFGQNFLIDASVLDHIISYAKIQKEDLVIEIGPGIGTLTEAL 78
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E A+ + ++L +D +K + E K GF+
Sbjct: 79 CEHAGQVIAIEIDDKLIPILEENLAAKENFRLLHQDVLK-------VDFTELLKEYPGFS 131
Query: 220 --KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ LL S + +++Q+E A R+ + T +Y +++ V
Sbjct: 132 SVKVVANLPYYITTPILLSLLEKKLPLSSITVMVQKEVAERM-QAGPGTKDYGALSLAVQ 190
Query: 278 FYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKM 337
+YS+PE +VP F P+PKV + V+ + + + + + F + ++F +RK
Sbjct: 191 YYSKPEIVQEVPPHCFIPRPKVSSMVIHLSIYKESPV-ECENPEYLFKTIKASFMQRRKT 249
Query: 338 LRKSL 342
L +L
Sbjct: 250 LVNAL 254
>gi|335045398|ref|ZP_08538421.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759184|gb|EGL36741.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 288
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 132/261 (50%), Gaps = 18/261 (6%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ+++++S + D + + A +Q+ D+V+EIGPG G+LT L
Sbjct: 6 DSKETIAVLQRTNFQFKKQFGQNFLIDSSVLDHIISYAKIQKEDLVIEIGPGIGTLTEAL 65
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E A + ++L +D +K + + S
Sbjct: 66 CEHAGQVIAIEIDDKLIPILEENLAGKENFRLLHQDVLKVDFTELL-----KEYPSFSSV 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ LL + +++Q+E ALR+ + + T +Y +++ V +Y
Sbjct: 121 KVVANLPYYITTPILMDLLEKKLPLKSITVMVQKEVALRM-KAAPGTKDYGALSLAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML- 338
SEP +VP F P+P V ++V+ +L + +V F + +F +RK L
Sbjct: 180 SEPAIVQEVPPHCFIPRPNVSSSVIHLRLHKKAPV-SVQDPALLFKTIKFSFMQRRKTLV 238
Query: 339 ----------RKSLQHLCTSL 349
++ LQ L +SL
Sbjct: 239 NALASGFHLDKRQLQDLLSSL 259
>gi|373123571|ref|ZP_09537417.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 21_3]
gi|371660904|gb|EHO26148.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium 21_3]
Length = 291
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 134/266 (50%), Gaps = 11/266 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L + G F +K+ GQ++++ S I D++A A + + +V EIGPG G+LT L
Sbjct: 11 TKEILETHGMFAKKNYGQNFLIESGIVDKIARHAVLSDHCVVFEIGPGIGALTQYLCEYA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV- 222
V++ E D+ + ++ + D +++ DF++ ++ R G+ V+
Sbjct: 71 KKVVSFEIDERLPDVLADTLQEYDNFELVMSDFLEIDLKEWC-----RTYREEGYDVVIA 125
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
AN+P+ I+T ++ ++ + + +++Q+E A R + T +Y ++I + E
Sbjct: 126 ANLPYYITTPILFKIFESKADVAAITVMMQKEVADRFA-AEVNTKDYNALSIITQYRCEV 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
KVP+ F P+P VD+AV+ F+ + D P +SFF +V + F +RK + +
Sbjct: 185 TPVMKVPKNVFLPKPNVDSAVLQFRFR---DTPQNIEEESFFPLVKACFRQRRKTILNNY 241
Query: 343 QHLCTSLEIEKA-LGDVGLPATAAAD 367
C + +A L G+ T A+
Sbjct: 242 GEFCQDKQQARAELEKSGIDCTRRAE 267
>gi|260494381|ref|ZP_05814512.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33]
gi|260198527|gb|EEW96043.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_33]
Length = 264
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 136/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++R++F+ + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENILRKKFSLKENYTLVMGDVLEVDLRRYL---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F+
Sbjct: 116 NKIIENRDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGEVEYLFTIPREFFY 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S +F V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + + A+
Sbjct: 234 ILNQIEVSENERAE 247
>gi|283797637|ref|ZP_06346790.1| dimethyladenosine transferase [Clostridium sp. M62/1]
gi|291074750|gb|EFE12114.1| dimethyladenosine transferase [Clostridium sp. M62/1]
Length = 310
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 142/275 (51%), Gaps = 21/275 (7%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
TI+ + G +K GQ+++++ + D++ AA V D+VLEIGPG G++T L
Sbjct: 32 QKTIQIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE 91
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
+ V+A+E D +++ ++ E A D + V+ +D +K I+ L E KV
Sbjct: 92 SAKQVVAVEIDTNLIPILSETLAGYDNVTVINQDILKVDIK----KLAEEYNGGRPI-KV 146
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T +I L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 147 VANLPYYITTPIIMGLFESSVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 204
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSF-FSMVSSAFNGKRKMLR 339
EP VP F P+P V +AV+ +L + P + F ++ ++FN +RK L
Sbjct: 205 EPYIVANVPPNCFIPRPNVGSAVI--RLTRHKKPPVEVKNRDLMFKLIRASFNQRRKTL- 261
Query: 340 KSLQHLCTSLEI----EK---ALGDVGLPATAAAD 367
L L S EI EK A+ +G+PA+ +
Sbjct: 262 --LNGLNNSPEIPIGKEKIAAAIEQLGVPASVRGE 294
>gi|344923937|ref|ZP_08777398.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Candidatus Odyssella thessalonicensis L13]
Length = 282
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 140/265 (52%), Gaps = 28/265 (10%)
Query: 100 DYHATIKA-LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
D+ AT+KA + G +KSLGQ+++ N EI ++A +A + VLEIGPG G LT
Sbjct: 4 DHLATVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGLTRA 63
Query: 159 LLNAGAT-VLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216
LL AGA V+AIE D + ++E A+ +L+++Q D L++ + S
Sbjct: 64 LLEAGAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQAD---------ALTISPQDLLPS 114
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIF 275
K+VAN+P+N+ T ++ + L D + L+ Q+E ALR+V +P +T++Y + +
Sbjct: 115 RPIKIVANLPYNVGTQLLIRWLHCLDNIVSMTLMFQKEVALRIVAQP--KTADYGRLTVL 172
Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFF------SMVSS 329
+ ++P F +P F P PKV +++V P V S + + +
Sbjct: 173 AQYLTQPTKVFDLPPGAFSPPPKVKSSIVHL-------VPKVLSEQDLALLPYLEKITHA 225
Query: 330 AFNGKRKMLRKSLQHLCTSLEIEKA 354
AF +RKM+R SL + T +I+ A
Sbjct: 226 AFGQRRKMIRSSLSAVLTEDQIQAA 250
>gi|440531520|emb|CCP57030.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis F/SotonF3]
Length = 277
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 149/269 (55%), Gaps = 19/269 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ A V+A+EKD S+ QL + E C + L+ E K
Sbjct: 59 ALSEVLLSQWANVIALEKDPMFE-------ESLSQLPMDIEITDACE---YPLTSLE-DK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++F+++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
+RK+L SL++L ++ + L +G
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGF 253
>gi|237802779|ref|YP_002887973.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT]
gi|231274013|emb|CAX10806.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT]
Length = 277
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 149/269 (55%), Gaps = 19/269 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFE-------ESLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 331
+ +F++ +++ +Y FKV F+P+P V +AVV ++ + A + + FF++ +AF
Sbjct: 166 LTVFLSLFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFAL-ADSEIEEFFTLTRAAF 224
Query: 332 NGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
+RK+L SL++L ++ + L +G
Sbjct: 225 GQRRKLLANSLKNLYPKDKVFQVLEQLGF 253
>gi|150024182|ref|YP_001295008.1| dimethyladenosine transferase [Flavobacterium psychrophilum
JIP02/86]
gi|166221664|sp|A6GVR5.1|RSMA_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|149770723|emb|CAL42187.1| Dimethyladenosine transferase [Flavobacterium psychrophilum
JIP02/86]
Length = 259
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 13/233 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQH++ + I +A ++ D VLEIGPG G LT LL T IE D
Sbjct: 7 KKHLGQHFLKDESIAKDIADTLNLEGYDNVLEIGPGMGVLTKYLLAKEVTTYVIEIDTES 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V + + + + K++ +DF+K +I +FE ++ FA ++ N P+NIST ++
Sbjct: 67 VTYLDQNYPKLKD-KIISKDFLKYNIN----EIFEGKQ----FA-IIGNFPYNISTQIVF 116
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+ L + E + Q+E A R+ E T Y +++ V + + EY F V T F P
Sbjct: 117 RALEYRNQIPEFAGMFQKEVAQRICEKK-GTKAYGILSVLVQAFYDAEYLFTVDETVFIP 175
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
PKV + V+ +L++ DY K FF++V +AF +RK LR SL+ L S
Sbjct: 176 PPKVKSGVL--RLRRKKDYSLPCGEKLFFTVVKTAFQQRRKTLRNSLKTLNLS 226
>gi|257062209|ref|YP_003140097.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802]
gi|256592375|gb|ACV03262.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802]
Length = 272
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 129/236 (54%), Gaps = 12/236 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + DQ+ AA + D+VLEIGPGTG LT LL +++A+E D+
Sbjct: 4 PRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPLVQSIVAVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + F + + +L+ D + + + + E+ KVVANIP+NI++ ++
Sbjct: 64 LCYRLAKSFGNFNHFLLLEGDILSLDLTTQL----EQFPQFQPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + +VLL+Q+E A R+V S ++ Y +++ + ++ +Y +VP
Sbjct: 120 EKLLGSIAHPQHPSYELIVLLMQKEVAQRIVA-SPQSKAYGALSVRTQYLAQCDYICEVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
F P PKVD+AV+ ++ + PA+ K +V F +RKML +L+ +
Sbjct: 179 SKAFDPPPKVDSAVIRLT-PRSLETPAINPQK-LDQLVKLGFANRRKMLHNNLKSI 232
>gi|70732937|ref|YP_262708.1| dimethyladenosine transferase [Pseudomonas protegens Pf-5]
gi|118600886|sp|Q4K4X5.1|RSMA_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|68347236|gb|AAY94842.1| dimethyladenosine transferase [Pseudomonas protegens Pf-5]
Length = 270
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRMLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNTLGAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLQNAGLIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA + +V AFN +RK LR +L+ L +S EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHRLLERIVREAFNQRRKTLRNTLKALLSSAEIEAA 238
>gi|171779142|ref|ZP_02920113.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282198|gb|EDT47625.1| dimethyladenosine transferase [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 290
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 131/258 (50%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQP-LVQVKDEDFFFRVSKIGFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H + EI+ L
Sbjct: 238 WNNLTSHFGKADEIKAKL 255
>gi|218249123|ref|YP_002374494.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801]
gi|226729777|sp|B7JWJ7.1|RSMA_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|218169601|gb|ACK68338.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801]
Length = 272
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 129/236 (54%), Gaps = 12/236 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + DQ+ AA + D+VLEIGPGTG LT LL +++A+E D+
Sbjct: 4 PRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPLVQSIVAVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + F + + +L+ D + + + + E+ KVVANIP+NI++ ++
Sbjct: 64 LCYRLAKSFGNFNHFLLLEGDILSLDLTTQL----EQFPQFQPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + +VLL+Q+E A R+V S ++ Y +++ + ++ +Y +VP
Sbjct: 120 EKLLGSIAHPQHPSYELIVLLMQKEVAQRIVA-SPQSKAYGALSVRTQYLAQCDYICEVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
F P PKVD+AV+ ++ + PA+ K +V F +RKML +L+ +
Sbjct: 179 SKAFDPPPKVDSAVIRLT-PRSLETPAINPQK-LDQLVKLGFANRRKMLHNNLKSI 232
>gi|288554650|ref|YP_003426585.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4]
gi|288545810|gb|ADC49693.1| dimethyladenosine transferase [Bacillus pseudofirmus OF4]
Length = 302
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 138/252 (54%), Gaps = 16/252 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ + + AA + E +EIGPG G+LT L V+A E DQ +
Sbjct: 33 KKSLGQNFLIDTNVLRNIVDAANLDETSGAIEIGPGIGALTEQLAKRVDQVVAFEIDQRL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D ++++ D +K I + + F+ + VVAN+P+ ++T ++
Sbjct: 93 LPVLKDTLSPYDNVQIIHSDVLKADINEAIKAHFKDGQD----LMVVANLPYYVTTPILM 148
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL + +V+++Q E A R+ +P T +Y ++I +Y+E E VP + F
Sbjct: 149 KLLELKLPIRGIVVMIQAEVAERIAAKPG--TKDYGSLSIAAQYYAEAEKVLTVPASVFV 206
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS---- 348
PQP+VD+AV+ ++Q PA V + FF + ++F +RK + +L H S
Sbjct: 207 PQPRVDSAVLRLTIRQK---PAVEVIDEQYFFKVFHASFANRRKTILNNLVHNLASKSQK 263
Query: 349 LEIEKALGDVGL 360
EIE+AL + +
Sbjct: 264 AEIEQALAEADI 275
>gi|363896909|ref|ZP_09323457.1| dimethyladenosine transferase [Oribacterium sp. ACB7]
gi|361960097|gb|EHL13355.1| dimethyladenosine transferase [Oribacterium sp. ACB7]
Length = 288
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 134/261 (51%), Gaps = 18/261 (6%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ+++++S + + + + + + + D+++EIGPG G+LT L
Sbjct: 6 DSKETIAVLQKTNFQFKKQFGQNFLIDSSVLEHILSFSEINKDDLIIEIGPGIGTLTEAL 65
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E ++ D K++ D +K LSL E K S
Sbjct: 66 CERAGFVVAIEIDDKLIPILEENLSAKDNFKLIHGDALKV----DYLSLLEEHKEFSS-V 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ LL + +++Q+E ALR+ + + T +Y +++ V +Y
Sbjct: 121 KVVANLPYYITTPILMDLLEKKLPLKSITVMVQKEVALRM-KAAPGTKDYGALSLAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML- 338
SEP +VP F P+P V ++V+ +L + +V F + +F +RK L
Sbjct: 180 SEPSIVQEVPPHCFIPRPNVSSSVIHLRLHKKAPV-SVQDPALLFKTIKFSFMQRRKTLV 238
Query: 339 ----------RKSLQHLCTSL 349
+K LQ L +SL
Sbjct: 239 NALASGFHLDKKQLQDLLSSL 259
>gi|386317774|ref|YP_006013938.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|417752255|ref|ZP_12400477.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|323128061|gb|ADX25358.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333771977|gb|EGL48868.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
Length = 290
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 19/269 (7%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K ++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQIQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVSRLSFVHRRK 235
Query: 337 MLRKSL-------QHLCTSLEIEKALGDV 358
L +L + + T LE AL D+
Sbjct: 236 TLWNNLTSHFGKSEDIKTKLEKGLALADI 264
>gi|22537918|ref|NP_688769.1| dimethyladenosine transferase [Streptococcus agalactiae 2603V/R]
gi|76798247|ref|ZP_00780496.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21]
gi|33516934|sp|Q8DXR8.1|RSMA_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|22534816|gb|AAN00642.1|AE014272_13 dimethyladenosine transferase [Streptococcus agalactiae 2603V/R]
gi|76586400|gb|EAO62909.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21]
Length = 290
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 138/263 (52%), Gaps = 15/263 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + A D ++V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMIQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSS-AFNGKRKM 337
+ F VPRT F P P VD+A++ + D P V+ + FF VS AF +RK
Sbjct: 180 MTAKVSFIVPRTVFVPAPNVDSAILKMVRR---DQPVVSVQDEDFFFRVSKVAFVHRRKT 236
Query: 338 LRKSL-QHLC----TSLEIEKAL 355
L +L H T ++EKAL
Sbjct: 237 LWNNLTSHFGKSEDTKAKLEKAL 259
>gi|297717804|gb|ADI50045.1| dimethyladenosine transferase [Candidatus Odyssella
thessalonicensis L13]
Length = 281
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 140/265 (52%), Gaps = 28/265 (10%)
Query: 100 DYHATIKA-LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
D+ AT+KA + G +KSLGQ+++ N EI ++A +A + VLEIGPG G LT
Sbjct: 4 DHLATVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGLTRA 63
Query: 159 LLNAGAT-VLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216
LL AGA V+AIE D + ++E A+ +L+++Q D L++ + S
Sbjct: 64 LLEAGAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQAD---------ALTISPQDLLPS 114
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIF 275
K+VAN+P+N+ T ++ + L D + L+ Q+E ALR+V +P +T++Y + +
Sbjct: 115 RPIKIVANLPYNVGTQLLIRWLHCLDNIVSMTLMFQKEVALRIVAQP--KTADYGRLTVL 172
Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFF------SMVSS 329
+ ++P F +P F P PKV +++V P V S + + +
Sbjct: 173 AQYLTQPTKVFDLPPGAFSPPPKVKSSIVHL-------VPKVLSEQDLALLPYLEKITHA 225
Query: 330 AFNGKRKMLRKSLQHLCTSLEIEKA 354
AF +RKM+R SL + T +I+ A
Sbjct: 226 AFGQRRKMIRSSLSAVLTEDQIQAA 250
>gi|429735814|ref|ZP_19269737.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156738|gb|EKX99359.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 292
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 132/254 (51%), Gaps = 18/254 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDRSVVQGIVDAAELSPADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + ++ D +K +I S +L L R + KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLKGYDNVTIVPGDILKLNI-SEILGLPNRSRF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A+R+ P + +Y ++I V +++ P VP F P
Sbjct: 141 LLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSIAVQYFTVPRMVMDVPPRAFMP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P+V +AV+ ++ D P V K FF +V +AF +RK L +L + E +
Sbjct: 199 APEVTSAVIACHVQ---DVPTVRPQDEKLFFRLVRAAFGQRRKTLLNALTGAGLTKEESR 255
Query: 354 ALGDVGLPATAAAD 367
A GL A A+
Sbjct: 256 A----GLAAAGIAE 265
>gi|339480140|ref|ZP_08655799.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc pseudomesenteroides KCTC 3652]
Length = 295
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 134/265 (50%), Gaps = 12/265 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + AA+ + D V+EIGPG G+LT L + V+
Sbjct: 17 LNEYGLRAKKKFGQNFLTDLNVLHGIVAASEITAEDNVIEIGPGIGALTEQLAKSAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ + + + V++ D +K +++ + F + K+VAN+P+
Sbjct: 77 AFEIDPQMVAVLSDTLSPYQNIHVIENDILKVNLKQVITEEF----GENANVKIVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL + T EY + + + +++ + K
Sbjct: 133 YITTPILMQLLRADIAWDNIVVMMQREVADRL-NAQVGTKEYGVLTLTIQYFATAQLAIK 191
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS-LQHLC 346
VP T+F P P VD+AVV KL T V F ++ F+ +RK L + LQ
Sbjct: 192 VPATSFNPAPNVDSAVV--KLTPLTPDVPVEQPNQLFGVIKGTFSHRRKSLWNNLLQTYG 249
Query: 347 TSLEI----EKALGDVGLPATAAAD 367
EI EKAL + + + A+
Sbjct: 250 KEAEIKSKLEKALQEANIEPSIRAE 274
>gi|16802234|ref|NP_463719.1| dimethyladenosine transferase [Listeria monocytogenes EGD-e]
gi|47096181|ref|ZP_00233780.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a
F6854]
gi|254829279|ref|ZP_05233966.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165]
gi|254913905|ref|ZP_05263917.1| dimethyladenosine transferase dimethyltransferase [Listeria
monocytogenes J2818]
gi|254938304|ref|ZP_05270001.1| dimethyladenosine transferase [Listeria monocytogenes F6900]
gi|255030001|ref|ZP_05301952.1| dimethyladenosine transferase [Listeria monocytogenes LO28]
gi|386042525|ref|YP_005961330.1| dimethyladenosine transferase [Listeria monocytogenes 10403S]
gi|386045825|ref|YP_005964157.1| dimethyladenosine transferase [Listeria monocytogenes J0161]
gi|386049117|ref|YP_005967108.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-561]
gi|386052465|ref|YP_005970023.1| dimethyladenosine transferase [Listeria monocytogenes Finland 1998]
gi|404282619|ref|YP_006683516.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2372]
gi|404409421|ref|YP_006695009.1| dimethyladenosine transferase [Listeria monocytogenes SLCC5850]
gi|404412288|ref|YP_006697875.1| dimethyladenosine transferase [Listeria monocytogenes SLCC7179]
gi|405757175|ref|YP_006686451.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2479]
gi|27151582|sp|Q8YAE2.1|RSMA_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|16409545|emb|CAC98403.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
monocytogenes EGD-e]
gi|47015429|gb|EAL06363.1| dimethyladenosine transferase [Listeria monocytogenes str. 1/2a
F6854]
gi|258601690|gb|EEW15015.1| dimethyladenosine transferase [Listeria monocytogenes FSL N3-165]
gi|258610916|gb|EEW23524.1| dimethyladenosine transferase [Listeria monocytogenes F6900]
gi|293591922|gb|EFG00257.1| dimethyladenosine transferase dimethyltransferase [Listeria
monocytogenes J2818]
gi|345532816|gb|AEO02257.1| dimethyladenosine transferase [Listeria monocytogenes J0161]
gi|345535759|gb|AEO05199.1| dimethyladenosine transferase [Listeria monocytogenes 10403S]
gi|346422963|gb|AEO24488.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-561]
gi|346645116|gb|AEO37741.1| dimethyladenosine transferase [Listeria monocytogenes Finland 1998]
gi|404229247|emb|CBY50651.1| dimethyladenosine transferase [Listeria monocytogenes SLCC5850]
gi|404232121|emb|CBY53524.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2372]
gi|404235057|emb|CBY56459.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2479]
gi|404237987|emb|CBY59388.1| dimethyladenosine transferase [Listeria monocytogenes SLCC7179]
gi|441469734|emb|CCQ19489.1| Ribosomal RNA small subunit methyltransferase A [Listeria
monocytogenes]
gi|441472869|emb|CCQ22623.1| Ribosomal RNA small subunit methyltransferase A [Listeria
monocytogenes N53-1]
Length = 295
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 12/263 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIAEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244
Query: 343 QHLCTSL-----EIEKALGDVGL 360
+L E+ + L +G+
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGI 267
>gi|227528872|ref|ZP_03958921.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
gi|227351195|gb|EEJ41486.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
Length = 297
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 124/240 (51%), Gaps = 6/240 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + I ++ AA V + D V+EIGPG G+LT L A V+
Sbjct: 17 LNEYGLHAKKGFGQNFLTDPAILQRIVEAAEVTDADNVIEIGPGIGALTEKLAQAAGQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E DQ ++ ++ + A+ D + V+ +D ++ ++ + F + KVVAN+P+
Sbjct: 77 AVEIDQDLIPVLEKTLAAYDNVTVINQDILRANLPELIQQQF---TDPTKPIKVVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKF 286
I++ ++ LL +S + +++Q+E A RL +P T +Y + + + + + E F
Sbjct: 134 YITSPILMNLLASPVEWSSITVMMQKEVAQRLTAKPG--TKQYGALTLAIEYQMDAEVAF 191
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V R +F P P VD+A+V K +Q + + F +RK L +LQ +
Sbjct: 192 NVSRHSFIPAPNVDSAIVVLKQRQQPLTTKPFDKQKLMGFIRGCFAHRRKSLWNNLQSVI 251
>gi|168333630|ref|ZP_02691890.1| dimethyladenosine transferase [Epulopiscium sp. 'N.t. morphotype
B']
Length = 283
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 135/242 (55%), Gaps = 15/242 (6%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
KA+ SK F +K GQ+++++ + ++ +AA + + D VLEIGPG GS+T LL
Sbjct: 11 KAVLSKYPFILKKKYGQNFLIDEHVLTKIISAANISKNDCVLEIGPGIGSVTQELLEHAQ 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+A+E D+ ++ ++ +F S D ++ EDF+K L L E K + KVVAN
Sbjct: 71 EVIAVEIDKELIPILNNQFGSYDNFALINEDFLK-------LDLKEVLKGXTNI-KVVAN 122
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPE 283
+P+ I+T +I LL F + +++Q+E A R+ P T EY I+ + +Y++
Sbjct: 123 LPYYITTPIIMALLESELPFINITVMVQKEVADRITALPG--TKEYGSISASIAYYAKVR 180
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS-FFSMVSSAFNGKRKMLRKSL 342
VP +F P+P V++AV+ +L + + P K FF ++ +AF+ +RK + +L
Sbjct: 181 LVANVPMHSFLPRPTVNSAVIELELYR--NPPVDLKNKEVFFKVIRAAFSQRRKTILNTL 238
Query: 343 QH 344
+
Sbjct: 239 SN 240
>gi|420157495|ref|ZP_14664328.1| dimethyladenosine transferase [Clostridium sp. MSTE9]
gi|394756051|gb|EJF39190.1| dimethyladenosine transferase [Clostridium sp. MSTE9]
Length = 287
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 135/249 (54%), Gaps = 15/249 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ++++N + ++A + VLE+GPG G LT L V++IE D+ ++
Sbjct: 23 KALGQNFLINPTVCPRMAEQSGAAPETGVLEVGPGIGVLTRELAERAQKVVSIELDRRLL 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E A D + V+ D +K ++ + +R+ + V AN+P+ I++ VI +
Sbjct: 83 PVLEETLADYDNVTVVNGDILKLDLKELL-----QREFAGMPVSVCANLPYYITSPVIMR 137
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + + +++Q+E A R+ +P T E + + V++Y+EPE F+V R +F P
Sbjct: 138 LLEERLDITSLTVMVQKEAARRICAQPG--TRECGAVTVAVHYYAEPEILFEVSRGSFLP 195
Query: 296 QPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRK-MLRKSLQHLCTSLE-I 351
P VD++V+ L++ PA V + FFS+V +AF +RK ML L E +
Sbjct: 196 APNVDSSVIRLTLRKE---PAVRVENEAGFFSLVRTAFGQRRKTMLNSVSAGLSLPKETV 252
Query: 352 EKALGDVGL 360
KAL D GL
Sbjct: 253 GKALDDAGL 261
>gi|192361991|ref|YP_001981369.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107]
gi|190688156|gb|ACE85834.1| dimethyladenosine transferase [Cellvibrio japonicus Ueda107]
Length = 287
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 137/264 (51%), Gaps = 13/264 (4%)
Query: 99 DDYHATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
+ Y A K LNS+ RK GQ+++++ I + A Q+ D+V+EIGPG G++T
Sbjct: 2 EQYLAMKKLLNSENTHKARKRFGQNFLVDHGIIRDIVRAVHPQKTDVVVEIGPGKGAITE 61
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217
+L +A + IE D+ +V ++ +F ++ Q D ++ R +
Sbjct: 62 LLADACDNLSVIELDRDLVPWLKVKFEKHPNFQLFQADALRFDFRQLI--------KPGQ 113
Query: 218 FAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
++V N+P+NIST +I LL + ++ +LQ+E R+ EP + Y + I V
Sbjct: 114 PLRIVGNLPYNISTPLIFHLLGYANQVKDMHFMLQKEVVKRMAAEPG--SGAYGRLGIMV 171
Query: 277 NFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336
++ E F+VP T+F P PKVD+A+V Q Y A + K+ ++V+ AF +RK
Sbjct: 172 QYFCAVENLFEVPPTSFDPPPKVDSAIVRLVPHQQLPYLA-NNLKTLETLVNVAFQQRRK 230
Query: 337 MLRKSLQHLCTSLEIEKALGDVGL 360
LR SL+ L + +++ D+ L
Sbjct: 231 TLRNSLKSLLSMAQLDSLPVDLNL 254
>gi|294783118|ref|ZP_06748442.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA]
gi|294479996|gb|EFG27773.1| dimethyladenosine transferase [Fusobacterium sp. 1_1_41FAA]
Length = 264
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 134/254 (52%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +Q+ + + E D +LEIGPG G+LTN+L+ + +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNQIIEVSNIDENDEILEIGPGQGALTNLLVERAKKLTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ + ++ + G KVVANIP+ I++ +I
Sbjct: 66 LEAGLRKKFSSKENYTLVMGDVLEVDLTKYL---------NKG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ ++ E +++Q+E R+ + E + + V +Y E +Y F +PR F
Sbjct: 116 NKLIENKELIDEAYIMVQKEVGERICAKA--GKERSILTLAVEYYGEADYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF + +AF+ KRK + +L L S + I++
Sbjct: 174 PVPNVDSAFISIKFYKDDRYKNKISEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L V + A+
Sbjct: 234 ILNQVEISENERAE 247
>gi|421836040|ref|ZP_16270634.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum CFSAN001627]
gi|409742176|gb|EKN41682.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum CFSAN001627]
Length = 278
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL + +IE D ++
Sbjct: 19 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEIYSIELDGDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 79 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P
Sbjct: 131 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIP 188
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E
Sbjct: 189 RPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMEN 246
Query: 354 ALGDVGL 360
A G+
Sbjct: 247 AFERAGI 253
>gi|404482670|ref|ZP_11017895.1| dimethyladenosine transferase [Clostridiales bacterium OBRC5-5]
gi|404343760|gb|EJZ70119.1| dimethyladenosine transferase [Clostridiales bacterium OBRC5-5]
Length = 292
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 129/229 (56%), Gaps = 7/229 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ A+ + + D+ +EIGPG G+LT L NA V+AIE D+++
Sbjct: 22 QKKFGQNFLIDTHVLDKICQASGLGKNDLAIEIGPGIGALTQYLANAAKAVVAIEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA--KVVANIPFNISTDV 233
+ ++ E A+ + + ++ DF+K + + E R+ F ++VAN+P+ I+T +
Sbjct: 82 LPILNETLANYENISIINADFLKVDLEK---LIEECRQKYGDFENIRIVANLPYYITTPI 138
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
I +L + +++Q+E A R+ + + +Y +++ V +YS+P VP F
Sbjct: 139 IMNVLESHIHIDSITVMIQKEVADRM-QALPGSKDYGALSLAVQYYSDPYIVAFVPPNCF 197
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P+PKV ++V+ + + AV K F ++ + FN +RK L SL
Sbjct: 198 IPRPKVGSSVIRLDIYKEKPIKAV-DDKLMFQIIRAGFNQRRKTLVNSL 245
>gi|168177414|ref|ZP_02612078.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916]
gi|182671129|gb|EDT83103.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916]
Length = 275
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL + +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEIYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV +F P
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNSFIP 185
Query: 296 QPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
+PKVD+ V+ KL + ++ V S K FF++V S+FN +RK L SL+ L E +E
Sbjct: 186 RPKVDSIVI--KLDRLSEPRVRVKSQKLFFNVVRSSFNMRRKTLWNSLKSLNIDKESMEN 243
Query: 354 ALGDVGL 360
A G+
Sbjct: 244 AFERAGI 250
>gi|443314473|ref|ZP_21044029.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 6406]
gi|442785918|gb|ELR95702.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 6406]
Length = 306
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 137/279 (49%), Gaps = 32/279 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AAAA+ D VLEIGPGTG LT L+ +V+A+E D+
Sbjct: 8 PRKRFGQHWLRSEVILDRIVAAAALGLCDRVLEIGPGTGLLTQRLMAQAGSVVAVEVDRD 67
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHML-----SLFERRKSSSGFA---------- 219
+ +R +F + ++++ D +K +RS + S F SS
Sbjct: 68 LCRRLRSQFGDRETFELIEGDVLKLDLRSMLAEQPRDSQFRSDPHSSANPSPHKASPHKA 127
Query: 220 ---KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
KVVANIP+ I+ ++++LL P F +VLL+Q+E A RL + +
Sbjct: 128 SPNKVVANIPYYITGPILERLLGTIAQPNPYPFESIVLLVQQEVAQRLCA-RPHSKAFGA 186
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS---FFSMVS 328
+ + V + ++ E VP F P PKV +AVV T P T ++ +V+
Sbjct: 187 LTVRVQYLADCEVICPVPAKAFQPPPKVASAVVRL-----TPRPIPTPAQNPQLLAQIVT 241
Query: 329 SAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATAAAD 367
F KRKMLR +L+ L + L + +P TA +
Sbjct: 242 LGFASKRKMLRNNLEGLIPRDRLLPLLAALEIPETARGE 280
>gi|345304440|ref|YP_004826342.1| ribosomal RNA small subunit methyltransferase A [Rhodothermus
marinus SG0.5JP17-172]
gi|345113673|gb|AEN74505.1| Ribosomal RNA small subunit methyltransferase A [Rhodothermus
marinus SG0.5JP17-172]
Length = 260
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 18/235 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK LGQH++++ I ++ A+ D V+EIGPGTG+LT +LL + AIE D
Sbjct: 8 RKRLGQHFLVDPNIARKIVASLQAAPEDPVVEIGPGTGALTGLLLERYPHLTAIEIDPRA 67
Query: 176 VGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
V ++ R+ +D Q VL D+ E + G VV N+P+ I++ +
Sbjct: 68 VAELKARWPELDVRQADVLTVDWA------------ELAEEKGGLLHVVGNLPYYITSPI 115
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+ LL + +E VL++Q E A RLV P + Y +++ ++ P F V R F
Sbjct: 116 LFALLEARAVLAEAVLMMQREVAERLVAPP-GSKTYGILSVAAQLWATPALLFPVSRHVF 174
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P+P+V++AVV ++ P V + ++ +AFN +RK LR SL+ L S
Sbjct: 175 RPKPRVESAVVRLTFERP--LPDV-DPELLRQVIRTAFNQRRKTLRNSLRRLLPS 226
>gi|332522163|ref|ZP_08398415.1| dimethyladenosine transferase [Streptococcus porcinus str.
Jelinkova 176]
gi|332313427|gb|EGJ26412.1| dimethyladenosine transferase [Streptococcus porcinus str.
Jelinkova 176]
Length = 290
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + FE +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVINQDILKADLQTQIQG-FENPELP---I 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ + ++ V FF + F +RK L
Sbjct: 179 YMVAKVAFIVPRTVFVPAPNVDSAILKME-RRVEPLIKVQDEDFFFRVAKVGFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E +K L
Sbjct: 238 WNNLTSHFGKSEETKKKL 255
>gi|421526883|ref|ZP_15973489.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Fusobacterium nucleatum ChDC F128]
gi|402256991|gb|EJU07467.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Fusobacterium nucleatum ChDC F128]
Length = 264
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 124/234 (52%), Gaps = 13/234 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + E D +LEIGPG G+LT +L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISENDEILEIGPGQGALTTLLVERVRKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+ + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSCKENYTLVMGDVLEVDLRKYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGEAEYLFTIPRELFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLATLGYS 227
>gi|355626639|ref|ZP_09048849.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_3_54FAA]
gi|354820743|gb|EHF05150.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_3_54FAA]
Length = 292
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + ++ AA V + D+VLEIGPG G++T L V+A+E D ++
Sbjct: 23 QKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAENAGRVVAVEIDSNL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + V+ ED +K I + + KVVAN+P+ I+T +I
Sbjct: 83 IPILEETLKDYDNITVINEDILKLDINK-----LAQEYNGGRPIKVVANLPYYITTPIIM 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L G + +++Q+E A R+ V P T +Y +++ V +Y+EP VP F
Sbjct: 138 GLFESGVPIDNITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAEPYIVANVPPNCFI 195
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+P V +AV+ + T V + F ++ ++FN +RK L L +
Sbjct: 196 PRPNVGSAVIRLT-RHRTPPVEVDDRELMFKLIRASFNQRRKTLLNGLNN 244
>gi|188584688|ref|YP_001916233.1| dimethyladenosine transferase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|254807876|sp|B2A3L9.1|RSMA_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|179349375|gb|ACB83645.1| dimethyladenosine transferase [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 302
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 21/263 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSLGQ+++++ I ++ AAA ++E DIVLEIGPG G+LT + + AIE DQ
Sbjct: 20 PKKSLGQNFLVDGNIIQKIIAAAELKEQDIVLEIGPGLGTLTRDMSFYVNEIFAIELDQR 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE---------RRKSSSGFAKVVANI 225
M+ +++E S D + ++ D +K + + E ++ + K V+N+
Sbjct: 80 MIDILQETVGSCDNVNIIHNDALKLDYQELISDFIEFSPAQLQCKSKQINPKNLKAVSNL 139
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
P+ I++ ++ +L S +VL++Q E A R S + Y + + ++ + E E
Sbjct: 140 PYYIASPLVLKLAKEKVPLSVMVLMVQREVADRFT-ASPGSKNYGAVTVLLDCFYEVEGV 198
Query: 286 FKVPRTNFFPQPKVDAAVVTF----KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
F VP+T F+PQP+V++ VV + K DY + F V+ AFN +RK L +
Sbjct: 199 FNVPKTVFYPQPRVESQVVKLTKRSEAKINDDY-----QEDFIKFVNQAFNSRRKTLVNN 253
Query: 342 LQHLCT--SLEIEKALGDVGLPA 362
+ + T E+ + L + G A
Sbjct: 254 ILSIFTGEKSELSQILENNGFSA 276
>gi|254302694|ref|ZP_04970052.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322886|gb|EDK88136.1| dimethyladenosine transferase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 264
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 136/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYILVMGDVLEVDLRKYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S + E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKSGK--ERGILTLAVEYYGETEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF + +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + + A+
Sbjct: 234 ILNQIEVSENERAE 247
>gi|433544148|ref|ZP_20500538.1| dimethyladenosine transferase [Brevibacillus agri BAB-2500]
gi|432184504|gb|ELK42015.1| dimethyladenosine transferase [Brevibacillus agri BAB-2500]
Length = 298
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 140/258 (54%), Gaps = 22/258 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I + A A + + +EIGPG G+LT L A V+AIE DQ +
Sbjct: 27 KKSLGQNFLVDTNILHNIVAEADLTKDKGAIEIGPGIGALTEQLGRAAGKVMAIEIDQRL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + + ++V+ D ++ ++ +L + S VVAN+P+ ++T ++
Sbjct: 87 LPILQDTLSPYENIEVVHGDVLELDLK----ALIAEKLSGVEKLSVVANLPYYVTTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q+E A R+ +P T +Y +++ FY+E E VP + F
Sbjct: 143 KLLEERLPLENIVVMIQKEVAERIAAKPG--TKDYGSLSVAAQFYAETEVAMIVPASVFI 200
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL--- 349
P+P VD+AV+ K++ D P V FF +V S+F +RK L L +L L
Sbjct: 201 PRPNVDSAVIRLKVR---DRPPVDVDDQDVFFRVVRSSFAQRRKTL---LNNLMNGLFLK 254
Query: 350 ----EIEKALGDVGLPAT 363
E+ + L D+G+ T
Sbjct: 255 TQKDEVIQMLADIGIEPT 272
>gi|395495209|ref|ZP_10426788.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. PAMC 25886]
Length = 270
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLKSGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FAS+ + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFASMPNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAA 238
>gi|358011360|ref|ZP_09143170.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acinetobacter sp. P8-3-8]
Length = 270
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 133/253 (52%), Gaps = 14/253 (5%)
Query: 105 IKALNSK--GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
I ALN K G RK GQ+++ + + ++ + A + GD ++EIGPG +LT+ L+
Sbjct: 4 INALNPKDEGHHTRKRFGQNFLHDQRVIAKIVRSVAPRSGDNIVEIGPGLAALTSPLIGE 63
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
+ +E D+ + + R ++L +++ D +K LF+ + +VV
Sbjct: 64 CDALTVVELDRDLAAGLPGRVPHPERLTIIETDALKY----DFTELFQEGRP----LRVV 115
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
N+P+NIST ++ LL G ++ +LQ+E R+ S T EY +++ + ++ +P
Sbjct: 116 GNLPYNISTPLLFHLLEFGGKVKDMHFMLQKEVVDRITA-SPNTKEYGRLSVMIQYFCKP 174
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSSAFNGKRKMLRKS 341
+ F+VP +F P PKV +AV F+L+ D P V + K+ +VS F +RK LR S
Sbjct: 175 TFLFEVPPGSFNPPPKVTSAV--FRLEPYADKPIVAKNEKALARLVSHVFTQRRKTLRNS 232
Query: 342 LQHLCTSLEIEKA 354
L+ + EKA
Sbjct: 233 LKGMLVEDGFEKA 245
>gi|313900886|ref|ZP_07834376.1| dimethyladenosine transferase [Clostridium sp. HGF2]
gi|422328330|ref|ZP_16409356.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
6_1_45]
gi|312954306|gb|EFR35984.1| dimethyladenosine transferase [Clostridium sp. HGF2]
gi|371660759|gb|EHO26004.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
6_1_45]
Length = 291
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 134/266 (50%), Gaps = 11/266 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L + G F +K+ GQ++++ S I D++A A + + +V EIGPG G+LT L
Sbjct: 11 TKEILETHGMFAKKNYGQNFLIESGIVDKIARHAVLSDHCVVFEIGPGIGALTQYLCEYA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV- 222
V++ E D+ + ++ + D +++ DF++ ++ R G+ V+
Sbjct: 71 KKVVSFEIDERLPDVLADTLQEYDNFELVMSDFLEIDLKEWC-----RTYREEGYDVVIA 125
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
AN+P+ I+T ++ ++ + + +++Q+E A R + T +Y ++I + E
Sbjct: 126 ANLPYYITTPILFKIFESKADVAAITVMMQKEVADRFA-AEVNTKDYNALSIITQYRCEV 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
KVP+ F P+P VD+AV+ F+ + D P +SFF +V + F +RK + +
Sbjct: 185 TPVMKVPKNVFLPKPNVDSAVLQFRFR---DTPQNIEEESFFPLVKACFRQRRKTILNNY 241
Query: 343 QHLCTSLEIEKA-LGDVGLPATAAAD 367
C + +A L G+ T A+
Sbjct: 242 GEYCQDKQQARAELEKSGIDCTRRAE 267
>gi|398983244|ref|ZP_10689916.1| dimethyladenosine transferase [Pseudomonas sp. GM24]
gi|399011946|ref|ZP_10714275.1| dimethyladenosine transferase [Pseudomonas sp. GM16]
gi|398116956|gb|EJM06712.1| dimethyladenosine transferase [Pseudomonas sp. GM16]
gi|398157430|gb|EJM45819.1| dimethyladenosine transferase [Pseudomonas sp. GM24]
Length = 272
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSISAKSEDRLLEIGPGQGALTAGLLSSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNTLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKQLLSNAEIEAA 238
>gi|323483571|ref|ZP_08088956.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum
WAL-14163]
gi|323403127|gb|EGA95440.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum
WAL-14163]
Length = 292
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + ++ AA V + D+VLEIGPG G++T L V+A+E D ++
Sbjct: 23 QKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAENAGRVVAVEIDSNL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + V+ ED +K I + + KVVAN+P+ I+T +I
Sbjct: 83 IPILEETLKDYDNITVINEDILKLDINK-----LAQEYNGGRPIKVVANLPYYITTPIIM 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L G + +++Q+E A R+ V P T +Y +++ V +Y+EP VP F
Sbjct: 138 GLFESGVPIDNITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAEPYIVANVPPNCFI 195
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+P V +AV+ + T V + F ++ ++FN +RK L L +
Sbjct: 196 PRPNVGSAVIRLT-RHRTPPVEVDDRELMFKLIRASFNQRRKTLLNGLNN 244
>gi|104779701|ref|YP_606199.1| dimethyladenosine transferase [Pseudomonas entomophila L48]
gi|95108688|emb|CAK13382.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
kasugamycin resistance [Pseudomonas entomophila L48]
Length = 266
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 128/240 (53%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA ++ Q D +K + L + ER KVV N+P+NIST +I
Sbjct: 70 VPILQHKFAGRGNFRLHQGDALKFDF--NQLGVPERS------LKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL ++ ++ +LQ+E R+ P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLAHANLIRDMHFMLQKEVVERMAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA +V AFN +RK LR +L+ L S IE A
Sbjct: 180 PPPKVDSAIVRLVPHEVLPHPA-KDPLLLERVVREAFNQRRKTLRNTLKGLLDSQAIEAA 238
>gi|329925506|ref|ZP_08280380.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
gi|328939789|gb|EGG36129.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
Length = 294
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 6/228 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + E LEIGPG G+LT L TV A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQTAGTVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E ++V D +K + LF + VVAN+P+ ++T ++
Sbjct: 85 IPILKEVLEPYGNVRVHHGDVLKVDLH----ELFRQDFGDVSKVSVVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ + + +Y ++I V +YSEP+ VP T F P
Sbjct: 141 KLLEEKLPLENIVVMIQKEVAERMA-AAPGSKDYGSLSIAVQYYSEPKLVCIVPHTVFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
QP V++AV+ +++ V + FF +V ++F +RK + +L+
Sbjct: 200 QPNVESAVIRLAVREQPPV-RVEDERFFFEVVQASFAQRRKTIANNLK 246
>gi|259418690|ref|ZP_05742607.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B]
gi|259344912|gb|EEW56766.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B]
Length = 280
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 135/258 (52%), Gaps = 22/258 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQH 174
RKSLGQ+++L+ + ++A A G VLEIGPG G LT LL+ GA VLAIEKDQ
Sbjct: 22 RKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGGLTRGLLSEGARKVLAIEKDQR 81
Query: 175 MVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ + E A +L+V+ D +K +H+ +V AN+P+N+ T++
Sbjct: 82 CLPALAEIAEAHPGRLEVINGDALKIDPLAHLTPPI----------RVAANLPYNVGTEL 131
Query: 234 IKQLLPMGD---IFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+ + L D + + L+ Q E A R+V +P + Y + I + +E + +P
Sbjct: 132 LVRWLTPKDWPPFWQSLTLMFQREVAERIVAQPG--SKAYGRLAILAQWRAEAKIALSLP 189
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P PKV +AVV +PA + S +V++AFN +RKMLR SL+ + S
Sbjct: 190 PGAFTPPPKVSSAVVHLTALPEPRFPADAAILS--RVVAAAFNQRRKMLRASLKGV--SP 245
Query: 350 EIEKALGDVGLPATAAAD 367
+IE L G+P T A+
Sbjct: 246 QIEDHLNAAGIPPTERAE 263
>gi|325264298|ref|ZP_08131029.1| dimethyladenosine transferase [Clostridium sp. D5]
gi|324030369|gb|EGB91653.1| dimethyladenosine transferase [Clostridium sp. D5]
Length = 303
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 135/250 (54%), Gaps = 15/250 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +A + D+VLEIGPG G++T L A V+A+E D+ +
Sbjct: 33 QKKFGQNFLIDTHVLDKIIRSAEISRDDMVLEIGPGIGTMTQYLACAAGKVIAVEIDRAL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + VL ED +K I + R++ KVVAN+P+ I+T +I
Sbjct: 93 IPILEDTLDGFDNVTVLNEDILKVDI-----AELAERENGGRPIKVVANLPYYITTPIIM 147
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V +Y++P VP F
Sbjct: 148 GLFEKHVPVKSITVMVQKEVAERMQVGPG--TKDYGALSLAVQYYAKPYIVANVPPNCFM 205
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQHL----CTSL 349
P+PKV +AV+ L++ P V + F ++ ++FN +RK L +++ T
Sbjct: 206 PRPKVGSAVIC--LERYEKPPVQVDDERLMFRIIRASFNQRRKTLANGMKNSPELDYTKE 263
Query: 350 EIEKALGDVG 359
+IE A+ +G
Sbjct: 264 QIEAAIESLG 273
>gi|295089979|emb|CBK76086.1| dimethyladenosine transferase [Clostridium cf. saccharolyticum K10]
Length = 310
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 142/275 (51%), Gaps = 21/275 (7%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
TI+ + G +K GQ+++++ + D++ AA V D+VLEIGPG G++T L
Sbjct: 32 QKTIQIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE 91
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
+ V+A+E D +++ ++ E A D + V+ +D +K I+ L E KV
Sbjct: 92 SAKQVVAVEIDTNLIPILSETLAVYDNVTVINQDILKVDIK----KLAEEYNGGRPI-KV 146
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T +I L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 147 VANLPYYITTPIIMGLFESSVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 204
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSF-FSMVSSAFNGKRKMLR 339
EP VP F P+P V +AV+ +L + P + F ++ ++FN +RK L
Sbjct: 205 EPYIVANVPPNCFIPRPNVGSAVI--RLTRHKKPPVEVKNRDLMFKLIRASFNQRRKTL- 261
Query: 340 KSLQHLCTSLEI----EK---ALGDVGLPATAAAD 367
L L S EI EK A+ +G+PA+ +
Sbjct: 262 --LNGLNNSPEIPIGKEKIAAAIEQLGVPASVRGE 294
>gi|407694817|ref|YP_006819605.1| ribosomal RNA small subunit methyltransferase A [Alcanivorax
dieselolei B5]
gi|407252155|gb|AFT69262.1| Ribosomal RNA small subunit methyltransferase A [Alcanivorax
dieselolei B5]
Length = 257
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 129/247 (52%), Gaps = 16/247 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I D+L A G ++EIGPG G+LT LL A + +E D+ +
Sbjct: 7 RKRFGQHFLHDPGIIDRLVRTVAPMAGQKLVEIGPGRGALTYPLLEQVAHLDVVELDRDL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTDVI 234
+ L+RE ++L + Q D ++ F+ R + +VV N+P+NIST +I
Sbjct: 67 IHLLREAVPE-ERLTIHQADALR----------FDFRPLAGDLKLRVVGNLPYNISTPLI 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL ++ ++ +LQ+E RL + TS+Y +++ V ++ + +Y F VP F
Sbjct: 116 FHLLEQAEVIGDMTFMLQKEVVDRLTA-APGTSDYGRLSVMVQYHCQADYLFFVPPGAFQ 174
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+AVV +PA +V+ AF +RK +R +L+ L +I A
Sbjct: 175 PPPKVDSAVVRLTPHATVPWPA-RDPVYLGKLVNQAFTQRRKAVRNALKTLVEP-DIFDA 232
Query: 355 LG-DVGL 360
LG D GL
Sbjct: 233 LGIDPGL 239
>gi|392972521|ref|ZP_10337910.1| ribosomal RNA small subunit methyltransferase A [Staphylococcus
equorum subsp. equorum Mu2]
gi|392509494|emb|CCI61217.1| ribosomal RNA small subunit methyltransferase A [Staphylococcus
equorum subsp. equorum Mu2]
Length = 296
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 126/238 (52%), Gaps = 6/238 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +KSLGQ+++++ I ++ A+ + E ++EIGPG GSLT L V+
Sbjct: 16 LNQYGFNFKKSLGQNFLIDVNIIQKIIDASDIGENTGIIEIGPGMGSLTEQLAKNAKKVV 75
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ ++ ++++ D ++++ ED +K +I +H ++ + VVAN+P+
Sbjct: 76 AFEIDQRLIPVLKDTMGPYDNVEIINEDILKANI-AHYVT---EHLADCDNIMVVANLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ L+ V+++Q+E RL + T Y ++I +Y+E
Sbjct: 132 YITTPILLNLMQQTLPIDGYVVMMQKEVGERL-NAQVGTKAYGSLSIVTQYYTETSKVLT 190
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
VP+T F P P VD+ VV +K+ T + + FF M +AF+ +RK + + Q L
Sbjct: 191 VPKTVFLPPPNVDSIVVKL-MKRQTPEVDIDNEDKFFKMTKAAFSQRRKTISNNYQSL 247
>gi|25011861|ref|NP_736256.1| dimethyladenosine transferase [Streptococcus agalactiae NEM316]
gi|77414160|ref|ZP_00790325.1| dimethyladenosine transferase [Streptococcus agalactiae 515]
gi|33516935|sp|Q8E3D7.1|RSMA_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|24413402|emb|CAD47481.1| Unknown [Streptococcus agalactiae NEM316]
gi|77159783|gb|EAO70929.1| dimethyladenosine transferase [Streptococcus agalactiae 515]
Length = 290
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 137/263 (52%), Gaps = 15/263 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + A D ++V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ L+ F+E V+++Q E A R + T Y ++I V +Y
Sbjct: 121 KVVANLPYYITTPILMHLIEGKIPFAEFVVMMQREVADR-ISAMPNTKAYGSLSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSS-AFNGKRKM 337
+ F VPRT F P P VD+A++ + D P V+ + FF VS AF +RK
Sbjct: 180 MTAKVSFIVPRTVFVPAPNVDSAILKMVRR---DQPVVSVQDEDFFFRVSKVAFVHRRKT 236
Query: 338 LRKSL-QHLC----TSLEIEKAL 355
L +L H T ++EKAL
Sbjct: 237 LWNNLTSHFGKSEDTKAKLEKAL 259
>gi|167031448|ref|YP_001666679.1| dimethyladenosine transferase [Pseudomonas putida GB-1]
gi|166857936|gb|ABY96343.1| dimethyladenosine transferase [Pseudomonas putida GB-1]
Length = 266
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA ++ Q D +K F + KVV N+P+NIST +I
Sbjct: 70 VPILQHKFADRGNFRLHQGDALKFD--------FNQLGVPPRSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E R+ ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERMAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V + +PA K +V AFN +RK LR +++ L S IE A
Sbjct: 181 PPKVDSAIVRLVPHEVLPHPA-KDAKLLEQVVREAFNQRRKTLRNTMKGLLDSAAIEAA 238
>gi|392330032|ref|ZP_10274648.1| dimethyladenosine transferase [Streptococcus canis FSL Z3-227]
gi|391419904|gb|EIQ82715.1| dimethyladenosine transferase [Streptococcus canis FSL Z3-227]
Length = 290
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 137/264 (51%), Gaps = 12/264 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVSS-AFNGKRK 336
Y + F VPRT F P P VD+A++ + D P + + FF VS +F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVSRLSFVHRRK 235
Query: 337 MLRKSLQHLCTSLEIEKALGDVGL 360
L +L E KA + GL
Sbjct: 236 TLWNNLTSHFGKSEDSKAKLEKGL 259
>gi|402700967|ref|ZP_10848946.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas fragi A22]
Length = 272
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 128/240 (53%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A + D +LEIGPG G+LT +LN+G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRAINAKPTDRLLEIGPGQGALTKGILNSGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++++FA + + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILKQQFAGMSNFTLHQGDALKFD--------FNSLGAAPRTLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E R+ P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLKNAGLIRDMHFMLQKEVVERMAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHEVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKALLSNAEIEAA 238
>gi|366087169|ref|ZP_09453654.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus zeae KCTC 3804]
Length = 298
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 6/227 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK LGQ+++ + +I ++ AAA + D V+EIGPG G+LT L ++ V+A+E D+ +
Sbjct: 25 RKGLGQNFLTDPQILQKIVAAADLSSQDDVIEIGPGIGALTQFLADSAHQVVALEIDERL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A V+ ED +K + + + F+ + + KVVAN+P+ I+T ++
Sbjct: 85 LPILAETLADYPNTAVVNEDVLKTDLSALVAEHFDGKHT----LKVVANLPYYITTPILL 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + +++Q+E A RL + + +Y ++I V ++ F V R F P
Sbjct: 141 HLLRARLPLHSMTVMMQKEVAARL-SATPGSKDYGSLSIAVQLVADVTTAFTVSRHAFVP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P VD+A+VT +++ AVT+ SF +V AF +RK L +L
Sbjct: 200 APNVDSAIVTLT-QRSEPLAAVTNPDSFERLVRGAFASRRKTLWNNL 245
>gi|385813043|ref|YP_005849436.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
helveticus H10]
gi|323465762|gb|ADX69449.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
helveticus H10]
Length = 294
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 129/247 (52%), Gaps = 14/247 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA + GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ D+ K++ +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L F+ + L++Q+E A RL E + EY P+ I V + + +V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISVQTEMDVKVALEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
+F P+PKVD++VV L + P + + K F +V F+ +RK L +L+ L
Sbjct: 200 KHNSFMPRPKVDSSVVV--LTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNLKTLIPD 257
Query: 349 LEIEKAL 355
E +AL
Sbjct: 258 SEKREAL 264
>gi|284803073|ref|YP_003414938.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578]
gi|284996214|ref|YP_003417982.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923]
gi|284058635|gb|ADB69576.1| dimethyladenosine transferase [Listeria monocytogenes 08-5578]
gi|284061681|gb|ADB72620.1| dimethyladenosine transferase [Listeria monocytogenes 08-5923]
Length = 295
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 12/263 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTT 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIAEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244
Query: 343 QHLCTSL-----EIEKALGDVGL 360
+L E+ + L +G+
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGI 267
>gi|18311499|ref|NP_563433.1| dimethyladenosine transferase [Clostridium perfringens str. 13]
gi|110799025|ref|YP_697204.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124]
gi|110801894|ref|YP_699773.1| dimethyladenosine transferase [Clostridium perfringens SM101]
gi|168213441|ref|ZP_02639066.1| dimethyladenosine transferase [Clostridium perfringens CPE str.
F4969]
gi|169343266|ref|ZP_02864277.1| dimethyladenosine transferase [Clostridium perfringens C str.
JGS1495]
gi|182624345|ref|ZP_02952130.1| dimethyladenosine transferase [Clostridium perfringens D str.
JGS1721]
gi|422347582|ref|ZP_16428493.1| ribosomal RNA small subunit methyltransferase A [Clostridium
perfringens WAL-14572]
gi|422875462|ref|ZP_16921947.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium perfringens F262]
gi|27151580|sp|Q8XHG8.1|RSMA_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|118600857|sp|Q0TMD6.1|RSMA_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|118600859|sp|Q0SQ34.1|RSMA_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|18146183|dbj|BAB82223.1| dimethyladenosine transferase [Clostridium perfringens str. 13]
gi|110673672|gb|ABG82659.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124]
gi|110682395|gb|ABG85765.1| dimethyladenosine transferase [Clostridium perfringens SM101]
gi|169298564|gb|EDS80645.1| dimethyladenosine transferase [Clostridium perfringens C str.
JGS1495]
gi|170715038|gb|EDT27220.1| dimethyladenosine transferase [Clostridium perfringens CPE str.
F4969]
gi|177910563|gb|EDT72936.1| dimethyladenosine transferase [Clostridium perfringens D str.
JGS1721]
gi|373223852|gb|EHP46196.1| ribosomal RNA small subunit methyltransferase A [Clostridium
perfringens WAL-14572]
gi|380303520|gb|EIA15822.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium perfringens F262]
Length = 285
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 133/247 (53%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A V E D+V+EIGPG G+LT LL V+AIE D ++
Sbjct: 24 KSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQLLKRAKRVVAIELDSSLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + +++ D +K F K+VAN+P+ ++T +I
Sbjct: 84 PILTAELGDNPKFQLIHNDALKVD--------FNEIIGDEKSVKLVANLPYYVTTPIIVN 135
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ EP+ + +Y ++I V +Y + KVP + F P
Sbjct: 136 LLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYYCNTKIVRKVPPSCFIP 193
Query: 296 QPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI-EK 353
+PKVD+ V+ +L++ + V + K FF +V AFN +RK L + +++ E+ EK
Sbjct: 194 RPKVDSIVIRLERLEEPS--VKVKNEKLFFEIVRHAFNMRRKTLWNATKNVKLPKELMEK 251
Query: 354 ALGDVGL 360
A + G+
Sbjct: 252 AYEEAGI 258
>gi|392988704|ref|YP_006487297.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Enterococcus
hirae ATCC 9790]
gi|392336124|gb|AFM70406.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus hirae ATCC 9790]
Length = 296
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 128/247 (51%), Gaps = 19/247 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ + + V+E+GPG G+LT L V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETGEIDQQTNVIEVGPGIGALTEQLARNANQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ A + V+ +D +K ++ + FE+ KVVAN+P+ I+T ++
Sbjct: 85 IPVLKDTLAPYPNVTVVHQDILKTNLDQAATTYFEQALP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESDLQVEEMVVMMQKEVADRISAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ----------- 343
PQP VD+A++ ++ AVT K+FF + +AF +RK L +LQ
Sbjct: 199 PQPNVDSAILKLTRRKQPAV-AVTDEKAFFRLTKAAFQQRRKTLWNNLQSSYGKDEATKA 257
Query: 344 HLCTSLE 350
L TSLE
Sbjct: 258 WLTTSLE 264
>gi|295689681|ref|YP_003593374.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
gi|295431584|gb|ADG10756.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
Length = 272
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 127/251 (50%), Gaps = 16/251 (6%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+AL RKS GQH++L+ + ++A A + EGD V+E+GPG G LT LL GA
Sbjct: 11 EALERHDLMARKSFGQHFLLDLNVTRKIARLAQIGEGDTVVEVGPGPGGLTRALLETGAR 70
Query: 166 VLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+AIEKD + L+ E D +L++++ D +K + +++ G A VV+N
Sbjct: 71 VVAIEKDSRFLPLLSEVAEVADGRLELVEGDALKV----------DAAQAAGGPAHVVSN 120
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPE 283
+P+N+ T ++ L + L+ Q+E A R+V +P Y + + E +
Sbjct: 121 LPYNVGTQLLINWLTGPFRPLSMTLMFQKEVADRIVAQPD--DDAYGRLAVIAQTLCEAK 178
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
+P F P PKV +AVV +Q D P + + ++AF +RKMLR SL+
Sbjct: 179 TVMDLPAKAFTPPPKVASAVVRLVPRQ--DPPPAEIVAALERVTAAAFGQRRKMLRSSLK 236
Query: 344 HLCTSLEIEKA 354
L EKA
Sbjct: 237 ALGGGELCEKA 247
>gi|422877372|ref|ZP_16923842.1| dimethyladenosine transferase [Streptococcus sanguinis SK1056]
gi|332360011|gb|EGJ37825.1| dimethyladenosine transferase [Streptococcus sanguinis SK1056]
Length = 290
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 12/246 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K ++ ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVNLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPR F P P VD+A++ ++ PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRKVFVPAPNVDSAILKMVRRE---RPAVEVQDEKFFFKVSKASFVHRRK 235
Query: 337 MLRKSL 342
L +L
Sbjct: 236 TLWNNL 241
>gi|330812131|ref|YP_004356593.1| dimethyladenosine transferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380239|gb|AEA71589.1| putative dimethyladenosine transferase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 272
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLDSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGRSNFSLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLSNAGLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L +S EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRMLERVVREAFNQRRKTLRNTLKLLLSSAEIEAA 238
>gi|304438548|ref|ZP_07398487.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368386|gb|EFM22072.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 292
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 134/255 (52%), Gaps = 20/255 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L +GA ++A+E D+ +
Sbjct: 27 KWLGQNFLVDAGVVRAIVDAADLSRSDTVLEIGPGIGTLTQGLAESGARIVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHI-RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
++ E D + V+ D +K I R L ER KVVAN+P+ I+T ++
Sbjct: 87 AVLAETLKGYDNVTVVPGDILKLDILRILNLGAGER-------FKVVANLPYYITTPILM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL +V ++Q+E A+R+ P + +Y ++I V +Y++ VP F
Sbjct: 140 ALLEQHLPIERMVTMVQKEVAVRMTARPG--SKDYGALSIAVQYYTDAHIVMDVPPRAFM 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
P P+V +AV+ ++++ P+V T K FF +V +AF +RK L +L T +
Sbjct: 198 PAPEVTSAVIACRMRET---PSVCPTDEKLFFRLVRAAFGQRRKTLLNAL----TGAGLT 250
Query: 353 KALGDVGLPATAAAD 367
K L GL A A+
Sbjct: 251 KELCRAGLAAAGIAE 265
>gi|323690920|ref|ZP_08105212.1| ribosomal RNA small subunit methyltransferase A [Clostridium
symbiosum WAL-14673]
gi|323505045|gb|EGB20815.1| ribosomal RNA small subunit methyltransferase A [Clostridium
symbiosum WAL-14673]
Length = 292
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + ++ AA V + D+VLEIGPG G++T L V+A+E D ++
Sbjct: 23 QKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAENAGRVVAVEIDSNL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + ++ ED +K I + + KVVAN+P+ I+T +I
Sbjct: 83 IPILEETLKDYDNITIINEDILKLDINK-----LAQEYNGGRPIKVVANLPYYITTPIIM 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L G + +++Q+E A R+ V P T +Y +++ V +Y+EP VP F
Sbjct: 138 GLFESGVPIDNITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAEPYIVANVPPNCFI 195
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+P V +AV+ + T V + F ++ ++FN +RK L L +
Sbjct: 196 PRPNVGSAVIRLT-RHRTPPVEVDDRELMFKLIRASFNQRRKTLLNGLNN 244
>gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vinifera]
Length = 383
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 132/261 (50%), Gaps = 25/261 (9%)
Query: 97 QDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLT 156
++DD K K F KS GQH + N + D + + ++ D VLEIGPGTG+LT
Sbjct: 32 RNDDVQK--KDNGEKHMFLYKSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLT 89
Query: 157 NVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK 213
LL A V+A+E D MV ++R+R A DQL V+ +D +K
Sbjct: 90 LRLLQAAQRVVAVELDARMVEILRKRVAEHGLEDQLTVICKDALKTDF------------ 137
Query: 214 SSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPI 272
F VVANIP+ IS+ ++ +L+ + F LLLQ+E A RL+ P SE+ +
Sbjct: 138 --PQFDLVVANIPYGISSPLVAKLVFGANPFRSATLLLQKEFARRLLANPG--DSEFNRL 193
Query: 273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFN 332
+ V +E E+ V + +F P PKVD++VVT + K + P V + + + F+
Sbjct: 194 AVNVKLVAEVEFVMDVSKRDFLPCPKVDSSVVTIRPK--AEVPDV-DLNEWCAFTRTCFS 250
Query: 333 GKRKMLRKSLQHLCTSLEIEK 353
K K L + +H +E+ +
Sbjct: 251 KKNKTLGATFKHKRRVMELWR 271
>gi|449881327|ref|ZP_21784395.1| dimethyladenosine transferase [Streptococcus mutans SA38]
gi|449926135|ref|ZP_21800607.1| dimethyladenosine transferase [Streptococcus mutans 4SM1]
gi|449160912|gb|EMB64142.1| dimethyladenosine transferase [Streptococcus mutans 4SM1]
gi|449251561|gb|EMC49571.1| dimethyladenosine transferase [Streptococcus mutans SA38]
Length = 291
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVSILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLLI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|333373013|ref|ZP_08464932.1| dimethyladenosine transferase [Desmospora sp. 8437]
gi|332971060|gb|EGK10030.1| dimethyladenosine transferase [Desmospora sp. 8437]
Length = 294
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 6/239 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L +G +KSLGQH++ + I D++ AA + VLEIGPG G+LT L
Sbjct: 13 TRQLLAERGLRLKKSLGQHFLTDRRILDKMMEAAGLGPEAGVLEIGPGIGALTERLAVEA 72
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ F+ ++++Q D + + L + VVA
Sbjct: 73 GQVVAVELDERLIPVLSSLFSDQPHVRIVQGDVMSLDLS----RLLQDHLGDCSRISVVA 128
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ ++T ++ +LL +V+++Q+E A RL S + Y I + +Y+E E
Sbjct: 129 NLPYYVTTPILMRLLEEKLPLDRIVIMIQKEVAERLT-ASPGSKAYGSITVATRYYAETE 187
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
+ KVP F P+P+VD+AV+ K++Q V F ++ +AF +RK L +L
Sbjct: 188 WVTKVPAHVFVPRPQVDSAVIRLKIRQRPPV-EVRDEALLFRVIRAAFGQRRKTLLNAL 245
>gi|296447968|ref|ZP_06889875.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
gi|296254535|gb|EFH01655.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
Length = 287
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 21/256 (8%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
DD + + G K+LGQ+++ + + ++A AA EG ++EIGPG G LT
Sbjct: 3 DDLPPLREVVAKHGLMASKALGQNFLFDLNLTARIARAAGPLEGATIVEIGPGPGGLTRA 62
Query: 159 LLNAGAT-VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCH----IRSHMLSLFERR 212
LL GA V+A+E+D + +RE A +L +++ D + +R H L
Sbjct: 63 LLAEGAGRVIAVERDARCMPALREIEARYPGRLVIVEGDALAADPAQLVREHGL------ 116
Query: 213 KSSSGFAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLVEPSLRTSEY 269
G A++ AN+P+NI+T+++ + + P +F VL+ Q E ALR+V + ++Y
Sbjct: 117 ---GGPARICANLPYNIATELLARWIEAEPWPSVFDRYVLMFQREVALRIVATPAQRADY 173
Query: 270 RPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSS 329
+ + + + F + + F P PKV ++VV + AT PA + + +
Sbjct: 174 GRLAVLCGWRTRARILFDLSPSAFTPPPKVTSSVVEL-VPNAT--PAACEPRLLSQVTKA 230
Query: 330 AFNGKRKMLRKSLQHL 345
AF +RKMLR+SL+ L
Sbjct: 231 AFGQRRKMLRQSLKSL 246
>gi|407797369|ref|ZP_11144312.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Salimicrobium sp. MJ3]
gi|407018252|gb|EKE30981.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Salimicrobium sp. MJ3]
Length = 291
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 6/227 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + A + E +EIGPG G+LT L +V A E DQ +
Sbjct: 24 KKSLGQNFLVDVNILKNMLCHAGISENTAAIEIGPGIGALTEQLALHAGSVTAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ E +S + ++ ED +K I + L + +VVAN+P+ I+T ++
Sbjct: 84 VPILEEELSSFENATIINEDILKADIDQVVRELARDHEE----VRVVANLPYYITTPILM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL F + +++Q+E A R+ S T Y ++I V +Y+E VP++ F P
Sbjct: 140 RLLMDRLPFQSITVMIQKEVAERMA-ASPGTKSYGSLSIAVQYYTEASIPMTVPKSVFMP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
QP VD+AV+ + K+A V FF +V ++F +RK L +L
Sbjct: 199 QPNVDSAVLHLE-KRAEPPVDVQDEDFFFEIVRASFKQRRKTLINNL 244
>gi|398841896|ref|ZP_10599102.1| dimethyladenosine transferase [Pseudomonas sp. GM102]
gi|398107260|gb|EJL97266.1| dimethyladenosine transferase [Pseudomonas sp. GM102]
Length = 272
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTKGLLDSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FAS + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFASKSNFHLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNASLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|225386275|ref|ZP_03756039.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme
DSM 15981]
gi|225047554|gb|EEG57800.1| hypothetical protein CLOSTASPAR_00018 [Clostridium asparagiforme
DSM 15981]
Length = 303
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 133/258 (51%), Gaps = 15/258 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + D++ AA + D VLEIGPG G++T L V+A+E D ++
Sbjct: 37 QKKFGQNFLIDPHVLDKIITAAGIGPEDCVLEIGPGIGTMTQYLAEHARQVIAVEIDANL 96
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + V+ +D +K I L + KVVAN+P+ I+T +I
Sbjct: 97 IPILGETLKDYSNVTVINDDILKVDIN----RLVDEHNGGKPI-KVVANLPYYITTPIIM 151
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L G + +++Q+E A R+ V P + +Y +++ V +Y+ P VP F
Sbjct: 152 GLFESGVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYASPYIVANVPPNCFI 209
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH----LCTSL 349
P+P V +AV+ +L + + P VT F ++ ++FN +RK L+ L + T
Sbjct: 210 PRPNVGSAVI--RLTRYKEPPVRVTDPALMFRLIRASFNQRRKTLQNGLNNSPELAYTKE 267
Query: 350 EIEKALGDVGLPATAAAD 367
I +A+ +GLPA+ +
Sbjct: 268 NIAEAIAGLGLPASVRGE 285
>gi|405754270|ref|YP_006677734.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2540]
gi|404223470|emb|CBY74832.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2540]
Length = 295
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 7/240 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + ++V+ D +K + + F + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNIQVVHGDVLKADVEEVIAEQFAKPDLP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAAPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244
>gi|451816958|ref|YP_007453159.1| ribosomal RNA small subunit methyltransferase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451782937|gb|AGF53905.1| ribosomal RNA small subunit methyltransferase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 281
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 140/270 (51%), Gaps = 22/270 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + + + A V + D ++EIGPG G+LT LL V +IE D ++
Sbjct: 21 KSLGQNFLVDDSVLNDIVSGAEVNDEDFIIEIGPGVGTLTAQLLMKAKKVTSIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ ++ +D +K L KS K+VAN+P+ ++T +I +
Sbjct: 81 PILQQELGDHKNFDLVHKDALKVDFN----ELIGDEKS----VKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ EP+ T EY +++ V +Y + + KVP T F P
Sbjct: 133 LLKEGYNFKSLTIMIQKEVAERINAEPN--TKEYGSLSVLVQYYCDTKILRKVPPTCFIP 190
Query: 296 QPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IE 352
+PKV++ V+ D P V S F +V + FN +RK L + + L +++ +E
Sbjct: 191 RPKVESIVIRL---DKLDEPRVKAKSIALMFELVRAGFNMRRKTLWNAAKSLKVNVDALE 247
Query: 353 KALGDVGLPATAAADYKFPITLPSTEYTLF 382
KA G+ A+ TL E+ L
Sbjct: 248 KAFEKSGIDPKRRAE-----TLTLEEFALL 272
>gi|224143306|ref|XP_002324910.1| predicted protein [Populus trichocarpa]
gi|222866344|gb|EEF03475.1| predicted protein [Populus trichocarpa]
Length = 386
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 23/229 (10%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
F KS GQH + N I D + +++ D VLEIGPGTG+LT LL+ + V+A+E D+
Sbjct: 55 FLYKSKGQHLLTNQRILDSIVRKSSINPTDTVLEIGPGTGNLTLKLLDVASKVVAVEIDK 114
Query: 174 HMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
MVG++ +R D+L V++ED +K F VVANIP+ IS
Sbjct: 115 RMVGVLNKRVKEHGFEDKLSVIREDALKAEF--------------PKFDLVVANIPYGIS 160
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+ ++ +L+ + F LLLQ+E A RL+ +P SE+ + + V ++ E+ V
Sbjct: 161 SPLVAKLVYGANPFRSATLLLQKEFARRLLAKPG--DSEFNRLAVNVKLVADVEFVMNVS 218
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
+ +FFP PKVD++VV + K P V + +++ + F K K L
Sbjct: 219 KRDFFPVPKVDSSVVIIRPKDRI--PDV-NLDEWWAFTKNCFGKKNKTL 264
>gi|407801359|ref|ZP_11148203.1| ribosomal RNA adenine dimethylase [Alcanivorax sp. W11-5]
gi|407024796|gb|EKE36539.1| ribosomal RNA adenine dimethylase [Alcanivorax sp. W11-5]
Length = 266
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 136/250 (54%), Gaps = 19/250 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I +L + A + D+++EIGPG G+LT L++ + A+E D+ +
Sbjct: 7 RKRFGQNFLTDTGIITRLVRSIAPRADDLMVEIGPGQGALTRPLMDELEHLHAVELDRDL 66
Query: 176 VGLVR----ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
+ L++ ER ++ Q L+ DF S ++ + R+ +VV N+P+NIST
Sbjct: 67 IALLQRTLSERRLTLHQADALRFDF------STLVPEGDTRR-----LRVVGNLPYNIST 115
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
++ L+ + ++ +LQ+E RLV P TS++ ++I + ++ + ++ F VP
Sbjct: 116 PLMFHLISQIHVVQDMHFMLQKEMVDRLVAVPG--TSDWGRLSIMIQYHCQTDFLFMVPP 173
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
+F P PKVD+A+V Q +P VT F ++V+ F +RK +R L+ E
Sbjct: 174 ESFSPAPKVDSAIVRLVPHQTLPHP-VTDYPRFAALVNQVFTQRRKAIRNGLKSFLAPAE 232
Query: 351 IEKALGDVGL 360
IE A D GL
Sbjct: 233 IEAAGIDPGL 242
>gi|289766489|ref|ZP_06525867.1| dimethyladenosine transferase [Fusobacterium sp. D11]
gi|289718044|gb|EFD82056.1| dimethyladenosine transferase [Fusobacterium sp. D11]
Length = 264
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 127/234 (54%), Gaps = 13/234 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ V IE D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVERVKKVTCIEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ ++ ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYTLVMGDVLEVDLKKYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S + E + + V +Y E EY F +PR F
Sbjct: 116 NKIIESKDLIDEAYIMVQKEVGERICAKSGK--ERGILTLAVEYYGEAEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P P VD+A ++ K + Y S +F V +AF+ KRK + +L L S
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYS 227
>gi|421874161|ref|ZP_16305768.1| dimethyladenosine transferase [Brevibacillus laterosporus GI-9]
gi|372456816|emb|CCF15317.1| dimethyladenosine transferase [Brevibacillus laterosporus GI-9]
Length = 292
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 8/228 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AA + + V+EIGPG G+LT L V+AIE DQ +
Sbjct: 26 KKSLGQNFLTDINILHNIIDAAELSKDKAVIEIGPGIGALTEQLCRVAGKVMAIEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ D +K + +L S VVAN+P+ ++T ++
Sbjct: 86 LPILEDTLSPYDNITVVHGDVLKLDVA----ALIAEHLSGCSGVSVVANLPYYVTTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G +V+++Q+E A R+ +P T +Y +++ FY+E + VP + F
Sbjct: 142 GLLESGIELDHIVVMIQKEVAERIAAKPG--TKDYGSLSVAAQFYAETSIEMIVPASVFI 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P+P VD+AV+ +++ V K FF +V ++F +RK L +L
Sbjct: 200 PRPNVDSAVIKLSIRKQP-IVEVADEKLFFRVVKASFAQRRKTLLNNL 246
>gi|237742501|ref|ZP_04572982.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13]
gi|229430149|gb|EEO40361.1| dimethyladenosine transferase [Fusobacterium sp. 4_1_13]
Length = 264
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 136/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N +EI +++ + + + D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKNEILNKIIEVSNISDNDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+ + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSPKENYTLVMGDVLEVDLRKYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S + E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKSGK--ERGILTLAVEYYGESEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + + A+
Sbjct: 234 ILNQIEVSENERAE 247
>gi|387895972|ref|YP_006326269.1| dimethyladenosine transferase [Pseudomonas fluorescens A506]
gi|387162785|gb|AFJ57984.1| dimethyladenosine transferase [Pseudomonas fluorescens A506]
Length = 270
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 10/245 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAAG 239
Query: 356 GDVGL 360
D GL
Sbjct: 240 VDGGL 244
>gi|331092538|ref|ZP_08341360.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330400759|gb|EGG80362.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 292
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 131/231 (56%), Gaps = 11/231 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ ++A + + D VLEIGPG G++T L +A V+A+E D+ +
Sbjct: 26 QKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTMTQYLASAAREVVAVEIDKAL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ D +K I + + ++ KVVAN+P+ I+T +I
Sbjct: 86 IPILSDTLSGFDNVTIINNDVLKVDIGA-----LAQEHNNGRPIKVVANLPYYITTPIIM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V +Y++P VP F
Sbjct: 141 GLFESNVPIESITVMVQKEVAERMQVGPG--TKDYGALSLAVQYYAKPYIVANVPPNCFM 198
Query: 295 PQPKVDAAVVTFKLKQATDYP-AVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+PKV +AV+ +L++ + P +V K F ++ ++FN +RK L L +
Sbjct: 199 PRPKVASAVI--RLERHKEPPVSVVDEKLMFKIIRASFNQRRKTLANGLNN 247
>gi|258513475|ref|YP_003189697.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM
771]
gi|257777180|gb|ACV61074.1| dimethyladenosine transferase [Desulfotomaculum acetoxidans DSM
771]
Length = 305
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 128/227 (56%), Gaps = 5/227 (2%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++S I ++ +AA ++ D+V+EIGPG G LT + + + VL+IE D+ +
Sbjct: 23 KKLGQNFLIDSNIISKIISAADLRSEDLVVEIGPGLGVLTQSIADEVSRVLSIEIDRKLQ 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ KV+ +D +K ++ S KV+AN+P+ I+T ++
Sbjct: 83 PILEVNLKEYSNTKVIFQDALKTDFDRL---VYAEAGGKSRSYKVIANLPYYITTPLLMH 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
+L +V+++Q E A R+ P + +Y +++ V +Y+EPE +VP+T F P
Sbjct: 140 ILESKFNVELIVIMVQREVAERMTAPPGK-KDYGALSVAVQYYTEPEIICRVPKTVFIPA 198
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P+VD+ V+ +K+ + S K FF++V +AFN +RK + ++Q
Sbjct: 199 PEVDSTVIRL-IKRKLPPVQLKSEKLFFNLVRTAFNQRRKTVLNAMQ 244
>gi|300172804|ref|YP_003771969.1| dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811]
gi|299887182|emb|CBL91150.1| Dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811]
Length = 295
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 7/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN+ G +K GQ+++ + ++ + A + D V+EIGPG GSLT + A VL
Sbjct: 17 LNAYGLHAKKKFGQNFLTDLDVLHGIVDTADITNEDYVIEIGPGIGSLTEQIARAAKKVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ E D +KV+ D ++ ++ + F + KVVAN+P+
Sbjct: 77 AFEIDTQMVKVLGETLKDYDNVKVISGDILEMNLPQIITEEF----GETAHVKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL + T Y + + V +++ + +
Sbjct: 133 YITTPILMQLLRTNITWDNIVVMMQREVADRL-NAEVGTKAYGVLTLTVQYFANAQLAIE 191
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
VP T F P PKV++AVV KL V + F ++ +F+ +RK L ++
Sbjct: 192 VPATAFNPAPKVESAVV--KLTPLVPQVIVDQPERLFGVIKGSFSHRRKSLWNNM 244
>gi|306832261|ref|ZP_07465415.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304425700|gb|EFM28818.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 290
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQP-LVQVKDEDFFFRVSKISFVHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|402304221|ref|ZP_10823296.1| dimethyladenosine transferase [Selenomonas sp. FOBRC9]
gi|400375294|gb|EJP28200.1| dimethyladenosine transferase [Selenomonas sp. FOBRC9]
Length = 291
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 125/227 (55%), Gaps = 10/227 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + V+ D +K +I L L E ++ KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLRGYDNVTVVPGDILKINI-PETLGLKEGQRF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A+R+ +P + +Y +++ V +++ P VP F P
Sbjct: 141 LLEQRLPIERLVTMVQKEVAMRMTAQPG--SKDYGALSLAVQYFTAPRMVMDVPPRAFRP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P+V +AVV +++ T A S K FF ++ +AF +RK L +L
Sbjct: 199 APEVTSAVVACTVRE-TPSVAPRSEKLFFRLIRAAFGQRRKTLPNAL 244
>gi|358467707|ref|ZP_09177389.1| dimethyladenosine transferase [Fusobacterium sp. oral taxon 370
str. F0437]
gi|357067344|gb|EHI77467.1| dimethyladenosine transferase [Fusobacterium sp. oral taxon 370
str. F0437]
Length = 264
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 135/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +Q+ + + E + +LEIGPG G+LTN+L+ + +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNQIIEVSNIDENNEILEIGPGQGALTNLLVERAKKLTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ + ++ + G KVVANIP+ I++ +I
Sbjct: 66 LEAGLRKKFSSKENYTLVMGDVLEVDLTKYL---------NKG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ ++ E +++Q+E R+ + E + + V +Y E +Y F +PR F
Sbjct: 116 NKLIENKELIDEAYIMVQKEVGERICAKA--GKERSVLTLAVEYYGEADYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S + FF + +AF+ KRK + +L L S + I++
Sbjct: 174 PVPNVDSAFISIKFYKDDRYKNKISEELFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L V + A+
Sbjct: 234 ILNQVEISENERAE 247
>gi|423699688|ref|ZP_17674178.1| dimethyladenosine transferase [Pseudomonas fluorescens Q8r1-96]
gi|387996837|gb|EIK58167.1| dimethyladenosine transferase [Pseudomonas fluorescens Q8r1-96]
Length = 272
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLDSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGRSNFSLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLSNAGLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L +S EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSSAEIEAA 238
>gi|329850882|ref|ZP_08265727.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19]
gi|328841197|gb|EGF90768.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19]
Length = 275
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 14/261 (5%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA 164
++L G +K+ GQH++L+ I ++ +GD V+E+GPG G LT LL + A
Sbjct: 9 ESLEQHGLMAKKAFGQHFLLDLNITRKIVRLGGPFDGDTVIEVGPGPGGLTRALLESEAA 68
Query: 165 TVLAIEKDQ---HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A+EKD ++G + E F D+ +V++ D +K + +L+ +R+ S A +
Sbjct: 69 HVIAVEKDSRFLELLGELNEVFG--DRFEVIEGDALKVD-EAQLLA--DRKLSPQ--AHI 121
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSE 281
V+N+P+N+ T ++ + L + L+ Q E ALR+V P + +Y +++ +
Sbjct: 122 VSNLPYNVGTPLLIKWLTGPWRPKSLTLMFQLEVALRVVAP-VGDDDYGRLSVISQILCD 180
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
+P F P P+VD+AVV +L D PA K+ + ++AF +RKMLR S
Sbjct: 181 ASKIMDLPARAFTPPPRVDSAVV--RLIPKADRPAPAVIKNLEKVTAAAFGQRRKMLRSS 238
Query: 342 LQHLCTSLEIEKALGDVGLPA 362
L+ L + ++KA D L A
Sbjct: 239 LKSLGGEVLLDKAAIDATLRA 259
>gi|410460308|ref|ZP_11313989.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus azotoformans LMG 9581]
gi|410460328|ref|ZP_11314008.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus azotoformans LMG 9581]
gi|409927267|gb|EKN64409.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus azotoformans LMG 9581]
gi|409927296|gb|EKN64436.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus azotoformans LMG 9581]
Length = 298
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 135/249 (54%), Gaps = 10/249 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ A + +EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDLNILNRIVDFAELTVNSGAIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E +KV+ ED +K ++ + F + VVAN+P+ ++T +I
Sbjct: 83 LPILKETLEPYPHVKVIHEDVLKANVNQVITEEFGEDQD----LMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V +LQ+E A R + + T +Y ++I + +Y+E + VP+T F P
Sbjct: 139 KLLTDQLPIRGIVCMLQKEVADR-IAAAPGTKDYGSLSIAIQYYTEAKTVMIVPKTVFIP 197
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-QHLCTSLE---I 351
QP +D+AV+ K+ VT + FF++V ++F +RK + +L H ++E I
Sbjct: 198 QPNIDSAVIRLT-KRPEPAVKVTDEEFFFTVVRASFAQRRKTIFNNLSSHFAQTIEKKNI 256
Query: 352 EKALGDVGL 360
EKAL G+
Sbjct: 257 EKALHAAGI 265
>gi|295398232|ref|ZP_06808278.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563]
gi|294973582|gb|EFG49363.1| dimethyladenosine transferase [Aerococcus viridans ATCC 11563]
Length = 301
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 11/230 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ +I + A V + +EIGPG G+LT L VLA E DQ +
Sbjct: 29 KKSLGQNFLTEPQILQHMVDVAGVDKDTNAIEIGPGIGALTEFLAINAKEVLAFEIDQRL 88
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + + +D ++ + + M + ++ VVAN+P+ I+T +I
Sbjct: 89 LPVLADTLSDYDNVTIKHQDILEADLNATMAAFPPAERTV-----VVANLPYYITTPIIF 143
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +L++Q+E A RL + T Y +++ + +Y + E F VPRT F P
Sbjct: 144 NLLEASFHFDQFILMMQKEVAERLT-AAPGTKAYGSLSVAIQYYCDAEIAFTVPRTVFNP 202
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQ 343
QP VD+A++ D P +T FF +V S+F +RK + +L+
Sbjct: 203 QPNVDSAILAL---NKLDKPRITVENEAFFFHLVRSSFKQRRKTIWNNLR 249
>gi|260102234|ref|ZP_05752471.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075]
gi|260083975|gb|EEW68095.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075]
Length = 291
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 129/247 (52%), Gaps = 14/247 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA + GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ D+ K++ +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L F+ + L++Q+E A RL E + EY P+ I V + + +V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISVQTEMDVKVALEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
+F P+PKVD++VV L + P + + K F +V F+ +RK L +L+ L
Sbjct: 200 NHNSFMPRPKVDSSVVV--LTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNLKTLIPD 257
Query: 349 LEIEKAL 355
E +AL
Sbjct: 258 SEKREAL 264
>gi|161506815|ref|YP_001576769.1| dimethyladenosine transferase [Lactobacillus helveticus DPC 4571]
gi|172048354|sp|A8YX55.1|RSMA_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|160347804|gb|ABX26478.1| Dimethyladenosine transferase [Lactobacillus helveticus DPC 4571]
Length = 294
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 129/247 (52%), Gaps = 14/247 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA + GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ D+ K++ +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L F+ + L++Q+E A RL E + EY P+ I V + + +V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISVQTEMDVKVALEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
+F P+PKVD++VV L + P + + K F +V F+ +RK L +L+ L
Sbjct: 200 NHNSFMPRPKVDSSVVV--LTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNLKTLIPD 257
Query: 349 LEIEKAL 355
E +AL
Sbjct: 258 SEKREAL 264
>gi|336435751|ref|ZP_08615465.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336000246|gb|EGN30398.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 296
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 139/250 (55%), Gaps = 15/250 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +A + + D+V+EIGPG G++T L A V AIE D+ +
Sbjct: 24 QKKFGQNFLIDTHVLDKIIRSAEITKEDMVVEIGPGIGTMTQYLACAAGKVAAIEIDKAL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + ++V+ +D +K I + + ++ KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLEGYENVQVINDDVLKVDI-----AKLAKEENGGRPIKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V +Y++P VP F
Sbjct: 139 GLFENHVPLKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAKPYIVANVPPNCFM 196
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH----LCTSL 349
P+PKV +AV+ +L++ + P V K F ++ ++FN +RK L L++ +
Sbjct: 197 PRPKVGSAVI--RLERYDEPPVQVEDEKLMFRIIRASFNQRRKTLANGLKNSPELQFSKE 254
Query: 350 EIEKALGDVG 359
EIEKA+ +G
Sbjct: 255 EIEKAIEGIG 264
>gi|450179817|ref|ZP_21886824.1| dimethyladenosine transferase [Streptococcus mutans 24]
gi|449248756|gb|EMC46981.1| dimethyladenosine transferase [Streptococcus mutans 24]
Length = 291
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ N+ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTNTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K S + + + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILK----SDLQTCIKEFANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMIQKEVADRISAQPS--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFCVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|256845838|ref|ZP_05551296.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2]
gi|256719397|gb|EEU32952.1| dimethyladenosine transferase [Fusobacterium sp. 3_1_36A2]
Length = 264
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 135/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNRIIEVSNINDNDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYILIMGDVLEIDLRRYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F + R F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGEAEYLFTILREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + +P A+
Sbjct: 234 ILNQIEVPENERAE 247
>gi|253576891|ref|ZP_04854216.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843758|gb|EES71781.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
str. D14]
Length = 298
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 6/228 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AAA +++ LEIGPG G+LT L V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILGKIVAAAELEKTQGALEIGPGIGALTEKLAQEAGKVAAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E + V+ D +K ++ +LF S VVAN+P+ ++T ++
Sbjct: 85 LPILQEVLEPYPHVHVIHGDVLKLDLK----ALFAAEFSGVSGVSVVANLPYYVTTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+LL +V+++Q+E A R+ + +Y ++I V +YS PE VP + F P
Sbjct: 141 KLLEEKLPLKHIVVMIQKEVAERMA-ATPGGKDYGSLSIAVQYYSTPEMICTVPHSVFIP 199
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
QP V++AV+ +++ AV FF +V ++F +RK + +L+
Sbjct: 200 QPNVESAVIRLTVREKPAV-AVQDEAFFFEVVQASFAQRRKTISNNLK 246
>gi|182677647|ref|YP_001831793.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182633530|gb|ACB94304.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 297
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 151/310 (48%), Gaps = 33/310 (10%)
Query: 90 CIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149
C+ C + DD + + + G +K+LGQ+++ + + ++A AA + +++EIG
Sbjct: 2 CLCCMSATKDDLPPLREVVATYGLAAKKALGQNFLFDLNLTGRIARAADPSKTALIVEIG 61
Query: 150 PGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLS 207
PG G LT LL GA V+AIE+D+ + + E A +L+V+ D + L
Sbjct: 62 PGPGGLTRALLAEGAPKVIAIEQDERCLPALAEIAAHYPGRLEVVAGDALTTD-----LG 116
Query: 208 LFERRKSSSGFAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLVEPSL 264
L +S A++ AN+P+NI T ++ + + P F +VL+ Q E A R+V
Sbjct: 117 LL---VASYRPARICANLPYNIGTALLTRWIETEPWPPWFDRLVLMFQREVAERIVATPA 173
Query: 265 RTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFF 324
+ ++Y + + N+ E F V + F P PKV +AVV + P +
Sbjct: 174 QRADYGRLAVLCNWRCETRILFDVSPSAFTPPPKVTSAVVELVPRA---EPLTCDREKLS 230
Query: 325 SMVSSAFNGKRKMLRKSLQHLC---TSLEIEKA----------LGDVGLPATAAADYKFP 371
++ +AF +RKMLR+SL+ L TS IE A + G A A D++
Sbjct: 231 AVTQAAFGQRRKMLRQSLKSLLGGGTSALIEAAGLAPTLRAEEVDIAGFVALARGDFR-- 288
Query: 372 ITLPSTEYTL 381
LP+TE+ L
Sbjct: 289 --LPATEHVL 296
>gi|424828023|ref|ZP_18252764.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium sporogenes PA 3679]
gi|365979506|gb|EHN15559.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium sporogenes PA 3679]
Length = 275
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 14/231 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLVDESVLEDIVEGAEISKEDTVIEIGPGVGTLTKELLEKAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----GLMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY + + V +Y + KV F P
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYYCNTKIIRKVSPNCFIP 185
Query: 296 QPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
+PKVD+ V+ KL Q V + K FF++V S+FN +RK L SL+ L
Sbjct: 186 RPKVDSIVIKLDKLSQPR--VKVKNEKLFFNVVRSSFNMRRKTLWNSLKSL 234
>gi|154249153|ref|YP_001409978.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1]
gi|154153089|gb|ABS60321.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1]
Length = 261
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 143/251 (56%), Gaps = 17/251 (6%)
Query: 116 RKSLGQHYMLNSEI-NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+KSLGQ++ L+SEI +++ + V++ D +LEIG G G+LT L GATV AIE D
Sbjct: 4 KKSLGQNF-LSSEIYAEKIVGLSNVEKNDTILEIGAGAGTLTVALAKTGATVFAIEIDNR 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
M +++ER D +K++ EDF++ I S + +G+ K ++NIP+ I+ ++
Sbjct: 63 MEPILKERLEKYDNVKIIFEDFLEMDI-SFL---------PNGY-KCISNIPYYITAPIL 111
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
K+LL FS + +++Q+E RL+E +S + + + ++ E VP++ F
Sbjct: 112 KKLLFTN--FSMLTIMMQKEVGERLLEKP-GSSNRGFLTVVLQTVADVEKLLLVPKSAFV 168
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-EIEK 353
P P VD+ V+ K+ + ++ +S+++ VS++F+ KRK + +L+ + + EIE
Sbjct: 169 PNPDVDSIVLKITKKKEFPFSNLSEFESYWTFVSNSFSQKRKTISNNLKSMGMAKEEIEN 228
Query: 354 ALGDVGLPATA 364
L ++ + A
Sbjct: 229 LLKNLNIKTNA 239
>gi|406668942|ref|ZP_11076233.1| dimethyladenosine transferase [Facklamia ignava CCUG 37419]
gi|405585223|gb|EKB59058.1| dimethyladenosine transferase [Facklamia ignava CCUG 37419]
Length = 292
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 128/230 (55%), Gaps = 8/230 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ AA+ + V+EIGPG G+LT L V A E DQ
Sbjct: 26 KKSLGQNFLMDTNILRKMVTTAALTDQTTVIEIGPGIGALTEFLALHSKQVYAFEIDQRF 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D ++++ D ++ + + ++ + + VVAN+P+ I+T +I
Sbjct: 86 IAILEDTLSDYDNVQIVHRDILEVDFSA---AEYQDLRQAEDLV-VVANLPYYITTPIIM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ G F ++V+++Q+E A R++ +P +T +Y ++I + E E F VPRT F
Sbjct: 142 GLITSGLPFRKLVMMMQKEVAQRMIAQP--QTKDYGSLSIAIQNTMEAELSFIVPRTVFN 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P P VD+AV+T + + P V T +F V F +RK L +L++
Sbjct: 200 PPPNVDSAVLTLTRRMSPLVP-VEDTAAFEQFVQVCFTQRRKTLWNNLRN 248
>gi|395243320|ref|ZP_10420307.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
hominis CRBIP 24.179]
gi|394484550|emb|CCI81315.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
hominis CRBIP 24.179]
Length = 294
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 17/254 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q+ D V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLNTIKAIVQAADIQKDDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERF------ASIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ ++DQ K++ +D +K + + + + K+VAN+P+
Sbjct: 85 PEILHNELPQTIGGQALDQRFKLVMKDVLKANFQEDAGNFLDLNNP----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I L+ F + L++Q+E A RL +P +T Y P+ + V + +
Sbjct: 141 ITTPIIFDLIKSDLNFVSLTLMMQKEVAQRLSAKP--KTKAYGPLTLAVQSRMHVNFDLE 198
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
V T+F PQPKVD+AVVT L T P + + F +V AF +RK L +L+ +
Sbjct: 199 VMHTSFMPQPKVDSAVVT--LTPLTQKPDIDDYQFFDHVVKIAFAQRRKTLSNNLKTFIS 256
Query: 348 SL-EIEKALGDVGL 360
E E+ + ++GL
Sbjct: 257 DKNEREQFITNLGL 270
>gi|406671663|ref|ZP_11078902.1| dimethyladenosine transferase [Facklamia hominis CCUG 36813]
gi|405580913|gb|EKB54972.1| dimethyladenosine transferase [Facklamia hominis CCUG 36813]
Length = 303
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 17/233 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++ +I +++ A + + V+EIGPG G+LT L V+A E DQ
Sbjct: 28 KKSLGQNFLIEPQILNKMVDLADIDKNCTVIEIGPGIGALTQFLAMRAKRVIAFEIDQRF 87
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK----VVANIPFNIST 231
V ++ E D + V+ ED +K +++ G + VVAN+P+ I+T
Sbjct: 88 VEILSETLVDFDNVTVIAEDILKVDF---------SKEAYKGLLEEPLMVVANLPYYITT 138
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
+I LL F +V+L+Q+E A R+ S+ T Y +++ + +Y F VPRT
Sbjct: 139 PIIMHLLQSELPFQSLVMLMQKEVAQRMT-ASVGTKAYNSLSVAIQMQMASQYAFVVPRT 197
Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQ 343
F PQPKVD+AV+ KL + V + F V F +RK L +L+
Sbjct: 198 VFIPQPKVDSAVL--KLTRLPQKRVVVADDRLFERFVQQCFKQRRKTLWNNLK 248
>gi|397688223|ref|YP_006525542.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Pseudomonas
stutzeri DSM 10701]
gi|395809779|gb|AFN79184.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri DSM 10701]
Length = 267
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 128/240 (53%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A + G+ ++EIGPG G+LT LL +GA + +E D +
Sbjct: 9 RKRFGQNFLHDAGVIDRILRAIHAKPGEQLVEIGPGQGALTEGLLGSGANLNVVELDLDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +FA + + Q D +K F R + G +VV N+P+NIST +I
Sbjct: 69 IPILQGKFAGHENFSLHQGDALKFD--------FARLSETPGSLRVVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL +P ++ ++I V ++ E+ F V F
Sbjct: 121 HLLDHARLIRDMHFMLQKEVVERLAAQPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 178
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA + ++V AF+ +RK LR +L+ + + IE A
Sbjct: 179 PAPKVDSAIVRLVPHEVLPHPA-RDHRLLENLVRQAFSQRRKTLRNTLKGMLDAQAIEAA 237
>gi|414161795|ref|ZP_11418047.1| ribosomal RNA small subunit methyltransferase A [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410875306|gb|EKS23229.1| ribosomal RNA small subunit methyltransferase A [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 296
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 127/241 (52%), Gaps = 7/241 (2%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
+AL K +F +KSLGQ+++++ I ++ A+ + E V+E+GPG GSLT L
Sbjct: 13 RALLDKYQFDFKKSLGQNFLIDVNIIHKIIEASNIDETTGVIEVGPGMGSLTEQLAKHAK 72
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+A E DQ ++ ++ + + D + V+ ED +K ++ + + F S VVAN
Sbjct: 73 KVVAFEIDQRLIPVLDDTLSDYDNVTVINEDILKANVVEAVQTHF----SDCDKIMVVAN 128
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
+P+ I+T ++ L+ V+++Q+E RL ++ T Y ++I +Y+E
Sbjct: 129 LPYYITTPILLNLMSQSLPIDGYVVMMQKEVGERL-NAAVGTKAYGSLSIVAQYYTETSK 187
Query: 285 KFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VP+T F P P VD+ VV +K+ +V FF M +AF+ +RK + + Q
Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKL-MKRTEPIVSVDDEDRFFKMTKAAFSQRRKTIANNYQS 246
Query: 345 L 345
L
Sbjct: 247 L 247
>gi|306834382|ref|ZP_07467499.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338]
gi|304423555|gb|EFM26704.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338]
Length = 290
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
K+VAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KIVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFIPAPNVDSAILKMTRREQP-LVQVKDEDFFFRVSKISFVHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|449903803|ref|ZP_21792346.1| dimethyladenosine transferase [Streptococcus mutans M230]
gi|449260422|gb|EMC57923.1| dimethyladenosine transferase [Streptococcus mutans M230]
Length = 291
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 139/273 (50%), Gaps = 15/273 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K S + + + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILK----SDLQTCIKEFANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV-SSAFNGKRKM 337
Y + F VPRT F P P VD+A++ K+ + P + FF V +AF +RK
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAIL--KMTRREQPPVQVQDEDFFFRVGKAAFVHRRKT 236
Query: 338 LRKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
L +L H S E++ L A AAD K
Sbjct: 237 LWNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|378953236|ref|YP_005210724.1| protein KsgA [Pseudomonas fluorescens F113]
gi|359763250|gb|AEV65329.1| KsgA [Pseudomonas fluorescens F113]
Length = 272
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLDSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGRSNFSLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLSNAGLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L +S EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSSAEIEAA 238
>gi|288906214|ref|YP_003431436.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34]
gi|325979187|ref|YP_004288903.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386338656|ref|YP_006034825.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732940|emb|CBI14519.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34]
gi|325179115|emb|CBZ49159.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281292|dbj|BAK28866.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 290
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLHDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQP-LVQVKDEDFFFRVSKISFVHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|325912354|ref|ZP_08174750.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
gi|325475825|gb|EGC78995.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
Length = 295
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 140/254 (55%), Gaps = 17/254 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V E V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIIASAGVVECSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V + ++ F+V
Sbjct: 141 ITTPIILKLMHSPIKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAVKKDMDVDFAFEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
RT+F P PKVD+AVV K ++ + + F+ +V AF+ +RK L +L+ L
Sbjct: 200 KRTSFMPSPKVDSAVVVLK---PLEHKLLIEHEDLFNQIVKLAFSQRRKTLNNNLKSLIK 256
Query: 348 SLEI-EKALGDVGL 360
+ +K L D+ L
Sbjct: 257 DKDARQKLLNDLNL 270
>gi|229551483|ref|ZP_04440208.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1]
gi|258540770|ref|YP_003175269.1| dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705]
gi|385836481|ref|YP_005874256.1| dimethyladenosine transferase [Lactobacillus rhamnosus ATCC 8530]
gi|229315166|gb|EEN81139.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1]
gi|257152446|emb|CAR91418.1| Dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705]
gi|355395973|gb|AER65403.1| dimethyladenosine transferase [Lactobacillus rhamnosus ATCC 8530]
Length = 294
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 124/235 (52%), Gaps = 6/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ + +I ++ AAA V E D V+EIGPG G+LT L + V+
Sbjct: 15 LKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLADQAHQVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K ++ + + F+ + KVVAN+P+
Sbjct: 75 ALEIDDRLLPILAETLADYPNTTVVNEDVLKTNLTELVATHFDGNHT----LKVVANLPY 130
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ LL + +++Q+E A RL + + +Y ++I V ++ F
Sbjct: 131 YITTPILLHLLRAHLPLHSMTVMMQKEVAARL-SATPGSKDYGSLSIAVQLVADVATAFT 189
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
V R F P P VD+A+VT ++ AV + SF +V AF +RK L +L
Sbjct: 190 VSRHAFVPAPNVDSAIVTLT-QRPEPLAAVKNPDSFDRLVRGAFASRRKTLWNNL 243
>gi|160882017|ref|YP_001560985.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg]
gi|189028804|sp|A9KL97.1|RSMA_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|160430683|gb|ABX44246.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg]
Length = 290
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 134/247 (54%), Gaps = 10/247 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI+ LN +K GQ++++++ + +++ +A + + D+VLEIGPG G++T L
Sbjct: 6 DPKQTIEVLNRYRFIFQKKFGQNFLIDTHVLEKIIRSAEITKDDLVLEIGPGIGTMTQYL 65
Query: 160 LNAGATVLAIEKDQHMVGLV-RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218
V+A+E D++++ ++ ++ +S D + ++ ED +K I + + K+
Sbjct: 66 CENAREVVAVEIDKNLIPILEQDTLSSYDNVTIINEDILKVDINQIV-----KEKNGGKP 120
Query: 219 AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T +I L + +++Q+E A R+ + + +Y +++ V +
Sbjct: 121 IKVVANLPYYITTPIIMGLFEAHVPIDNITVMVQKEVADRM-QSGPGSKDYGALSLAVQY 179
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKM 337
Y++P VP F P+P V +AV+ L Q D P V + F ++ ++FN +RK
Sbjct: 180 YADPYIVANVPPNCFMPRPNVGSAVIRLTLHQ--DAPVKVKNENLLFKLIRASFNQRRKT 237
Query: 338 LRKSLQH 344
L L +
Sbjct: 238 LANGLNN 244
>gi|199597856|ref|ZP_03211282.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
rhamnosus HN001]
gi|258509566|ref|YP_003172317.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
gi|385829188|ref|YP_005866960.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
gi|199591292|gb|EDY99372.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
rhamnosus HN001]
gi|257149493|emb|CAR88466.1| Dimethyladenosine transferase [Lactobacillus rhamnosus GG]
gi|259650833|dbj|BAI42995.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
Length = 294
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 125/236 (52%), Gaps = 8/236 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ + +I ++ AAA V E D V+EIGPG G+LT L + V+
Sbjct: 15 LKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLADQAHQVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K ++ + + F+ + KVVAN+P+
Sbjct: 75 ALEIDDRLLPILAETLADYPNTTVVNEDVLKTNLTELVATHFDGNHT----LKVVANLPY 130
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T ++ LL + +++Q+E A RL P + +Y ++I V ++ F
Sbjct: 131 YITTPILLHLLRAHLPLHSMTVMMQKEVAARLSAVPG--SKDYGSLSIAVQLVADVATAF 188
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
V R F P P VD+A+VT +++ V S +SF +V AF +RK L +L
Sbjct: 189 TVSRHAFVPAPNVDSAIVTLT-QRSEPLATVQSPESFDRLVRGAFASRRKTLWNNL 243
>gi|423093364|ref|ZP_17081160.1| dimethyladenosine transferase [Pseudomonas fluorescens Q2-87]
gi|397882263|gb|EJK98750.1| dimethyladenosine transferase [Pseudomonas fluorescens Q2-87]
Length = 272
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ + + D + + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDPGVIDHILRSIHAKPDDRLLEIGPGQGALTEGLLDSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FAS + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 VPILNQQFASRSNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLSNAGLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|210617032|ref|ZP_03291367.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787]
gi|210149555|gb|EEA80564.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787]
Length = 290
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 129/231 (55%), Gaps = 11/231 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ ++A + + D VLEIGPG G++T L A V+A+E D+ +
Sbjct: 24 QKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTMTQYLACAARQVVAVEIDKAL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K I + + + KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLQAYDNVTVINDDVLKVDIPK-----LAKEYNDNKPIKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V +Y+EP VP F
Sbjct: 139 GLFESHVPIESITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAEPYIVANVPPNCFM 196
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+PKV +AV+ +L + + P V + K F ++ ++FN +RK L L +
Sbjct: 197 PRPKVGSAVI--RLTRHKEPPVQVENEKLMFQIIRASFNQRRKTLANGLNN 245
>gi|398890189|ref|ZP_10643876.1| dimethyladenosine transferase [Pseudomonas sp. GM55]
gi|398188492|gb|EJM75794.1| dimethyladenosine transferase [Pseudomonas sp. GM55]
Length = 272
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 126/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLSSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLHNSHLIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|402822040|ref|ZP_10871547.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas sp. LH128]
gi|402264415|gb|EJU14271.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas sp. LH128]
Length = 274
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 135/246 (54%), Gaps = 22/246 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++ + ++ D++AA +G VLE+GPG G LT LL AGA V AIE D+ +
Sbjct: 20 KALGQNFLFDEQLLDRIAAIPGSLDGKDVLEVGPGPGGLTRALLRAGANVTAIEMDRRCL 79
Query: 177 GLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ E + +LKV++ D +K + +LF +G +++N+P+N+ T +
Sbjct: 80 PALAELAEAFPGKLKVIEGDALKIDPK----TLF------AGEYHILSNLPYNVGTALFT 129
Query: 236 QLLPMGDI----FSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
L G+ ++ + L+ QEE A R+V EP TS Y + + + S+ + KV R
Sbjct: 130 GWL-SGEAWPPQWASLTLMFQEEVARRIVAEPD--TSAYGRLAVLAQWRSKAKLAMKVHR 186
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
+ F P PKV +A+V ++A P S + + AF +RKMLR+SL+ + +L+
Sbjct: 187 SAFTPPPKVMSAIVHVVPREA---PEGVSMRVLERVTEGAFGQRRKMLRQSLKGVPGALD 243
Query: 351 IEKALG 356
+ALG
Sbjct: 244 ALEALG 249
>gi|332638745|ref|ZP_08417608.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella cibaria KACC 11862]
Length = 298
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 7/236 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + AA VQ+ D V+EIGPG G+LT L A V+
Sbjct: 17 MNQFGINTKKSLGQNFLTDINILKNIVAAGDVQKTDNVVEIGPGIGALTEQLARAAKQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ A D + ++ D +K + FE + K+VAN+P+
Sbjct: 77 AFEIDDRLIPVLDHTMAPYDNVTIVHNDILKVDLEKEFAKQFE---DVTAPLKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T ++ Q+L G F +V+++Q+E A RL EP T +Y + + V + + F
Sbjct: 134 YITTPILMQVLQSGIHFDNIVVMMQKEVADRLSAEPG--TKDYGSLTLAVQYRMNAKLAF 191
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
V RT F P P VD+A+++ ++ K F + F +RK L +L
Sbjct: 192 TVSRTAFVPNPNVDSAIISLTPREPLAIQP-RDEKRLFELFKIGFVMRRKTLWNNL 246
>gi|47092871|ref|ZP_00230654.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b
H7858]
gi|254825899|ref|ZP_05230900.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194]
gi|417314235|ref|ZP_12100941.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Listeria monocytogenes J1816]
gi|47018775|gb|EAL09525.1| dimethyladenosine transferase [Listeria monocytogenes str. 4b
H7858]
gi|293595137|gb|EFG02898.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-194]
gi|328468506|gb|EGF39512.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Listeria monocytogenes J1816]
Length = 295
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 7/240 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + ++V+ D +K + + F + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNIQVVHGDVLKADVEEVIAEQFAKPDLP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244
>gi|262066560|ref|ZP_06026172.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC
33693]
gi|291379742|gb|EFE87260.1| dimethyladenosine transferase [Fusobacterium periodonticum ATCC
33693]
Length = 264
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 134/254 (52%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + E D +LEIGPG G+LTN+L+ + +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVERAKKLTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ + ++ + G KVVANIP+ I++ +I
Sbjct: 66 LEAGLRKKFSSKENYTLVMGDVLEVDLTKYL---------NKG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ ++ E +++Q+E R+ + E + + V +Y E +Y F +PR F
Sbjct: 116 NKLIENKELIDEAYIMVQKEVGERICAKA--GKERSILTLAVEYYGEADYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF + +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKVSEDLFFKYIKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L V + A+
Sbjct: 234 ILNQVEISENERAE 247
>gi|450081223|ref|ZP_21851609.1| dimethyladenosine transferase [Streptococcus mutans N66]
gi|449215461|gb|EMC15650.1| dimethyladenosine transferase [Streptococcus mutans N66]
Length = 291
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVSILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFCVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|307152257|ref|YP_003887641.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822]
gi|306982485|gb|ADN14366.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822]
Length = 279
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 14/235 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + ++ AA ++ D +LEIGPGTG LT LL +V+A+E D+
Sbjct: 5 PRKRFAQHWLRSEQALSEIIQAAQLKNTDRLLEIGPGTGILTRRLLPEVESVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + +D +LQ D + + + L+ F + + F KVVANIP+NI+ ++
Sbjct: 65 LCKKLVKSLGQLDNFLLLQGDILSLDLTTE-LAPFPK---FTPFNKVVANIPYNITGPIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
+ LL P + +VLL+Q+E A RL +P T Y ++I V + + E+ +V
Sbjct: 121 EYLLGTISEPGHQKYELIVLLMQKEVAERLTAKPG--TKAYSALSIRVQYLAACEWICEV 178
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P F+P PKVD+AVV + Q PA + + ++V F +RKML +L+
Sbjct: 179 PARAFYPPPKVDSAVVRLR-PQRVARPA-NNPRQLDTLVKLGFANRRKMLHNNLK 231
>gi|138893714|ref|YP_001124167.1| dimethyladenosine transferase [Geobacillus thermodenitrificans
NG80-2]
gi|166221668|sp|A4IJB8.1|RSMA_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|134265227|gb|ABO65422.1| Dimethyladenosine transferase [Geobacillus thermodenitrificans
NG80-2]
Length = 293
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 139/252 (55%), Gaps = 15/252 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ AA + +EIGPG G+LT L V+A E D +
Sbjct: 23 KKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARRAKKVVAFEIDSRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D ++++ +D +K + + + F + VVAN+P+ ++T +I
Sbjct: 83 LPILADTLSAYDNVRIIHQDVLKADLHAVIAEEF----AEVSDRMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q+E A RL +P T +Y + I V +Y+E E VPRT F
Sbjct: 139 KLLTERLPIRGMVVMMQKEVADRLAAKPG--TKDYGSLTIAVQYYTEAEVVMTVPRTVFM 196
Query: 295 PQPKVDAAVVTFKLKQATDYP-AVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TS 348
PQP VD+AV+ +L + + P AV + FF +V ++F +RK L +L +
Sbjct: 197 PQPNVDSAVI--RLTKRSHPPVAVEDEEVFFQVVRASFAQRRKTLLNNLLNNLPDGKEKK 254
Query: 349 LEIEKALGDVGL 360
+IE+AL VG+
Sbjct: 255 EQIERALDAVGI 266
>gi|78499686|gb|ABB45840.1| hypothetical protein [Eutrema halophilum]
Length = 310
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 135/266 (50%), Gaps = 31/266 (11%)
Query: 81 GVQKGAASACIVCARSQDDDYHATIKALNSK----GRFPRKSLGQHYMLNSEINDQLAAA 136
G+ K A+S + R +YH+ + K G F KS GQH + N+ I D +
Sbjct: 13 GIVKSASSYYLASRR----NYHSWSGQVEKKKEQDGLFLHKSKGQHLLTNNRILDAIVRI 68
Query: 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQ 193
+ V+ D VLEIGPGTG+LT LL A V+A+E D+ MV ++ +R A D+L ++Q
Sbjct: 69 SDVRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEIDKRMVEILGKRVADHGLEDKLTIIQ 128
Query: 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQE 253
+D +K F VVANIP+NIS+ ++ +L+ + F LLLQ+
Sbjct: 129 KDVLKTDF--------------PQFDLVVANIPYNISSPLVAKLVYGSNAFRSATLLLQK 174
Query: 254 ETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQAT 312
E + RL+ P S++ + + V ++ ++ V + F P PKVD+++V + K+
Sbjct: 175 EFSRRLLANPG--DSDFNRLAVNVKLVADVQFVMDVSKREFVPPPKVDSSLVIIRPKEVK 232
Query: 313 DYPAVTSTKSFFSMVSSAFNGKRKML 338
P V + + + + F K K L
Sbjct: 233 --PDV-DVQEWLAFTRTCFGNKNKTL 255
>gi|398959140|ref|ZP_10677956.1| dimethyladenosine transferase [Pseudomonas sp. GM33]
gi|398145515|gb|EJM34296.1| dimethyladenosine transferase [Pseudomonas sp. GM33]
Length = 272
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLSSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNSHLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|86134822|ref|ZP_01053404.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152]
gi|85821685|gb|EAQ42832.1| ribosomal RNA adenine dimethylase [Polaribacter sp. MED152]
Length = 267
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 20/241 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQH++ + I +A A + + VLEIGPG G LT LL +E D+
Sbjct: 6 KKHLGQHFLTDESIAKDIADALTEEGYNHVLEIGPGMGVLTKYLLQKKPKTTVLELDRES 65
Query: 176 VGLVRERF--------ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
V ++E F + D ++++ DF+K ++ +LF + + + ++ N P+
Sbjct: 66 VSYLKEVFPIEHLNLNTTSDNFQIIEGDFLKKDLQ----TLFNKEQVA-----IIGNFPY 116
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
NIST ++ + + + E + Q+E A R+ E + Y +++ + + EY F
Sbjct: 117 NISTQIVFKAIENREFVPEFAGMFQKEVAKRIAEKE-GSKVYGILSVLTQAFFDVEYLFT 175
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
VP T F P PKVD+ V+ +L + DY K FF +V +AFN +RKMLR SL+
Sbjct: 176 VPPTVFNPPPKVDSGVI--RLIRKKDYSLPVDEKLFFRVVKTAFNQRRKMLRSSLKSFKL 233
Query: 348 S 348
S
Sbjct: 234 S 234
>gi|433460538|ref|ZP_20418167.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Halobacillus sp. BAB-2008]
gi|432191380|gb|ELK48338.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Halobacillus sp. BAB-2008]
Length = 289
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 136/251 (54%), Gaps = 14/251 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + A A + + +EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDVNILTNIIAEAGIDDTTAAIEIGPGIGALTEQLARHADKVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + + + ++ ED +K + + FE + +VVAN+P+ I+T ++
Sbjct: 84 LPILGETLSEYNNVHIINEDILKADVAGMIDEHFEEGQK----IRVVANLPYYITTPILM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL + +++Q+E A R+ EP+ T Y ++I V +Y++ VP+T F
Sbjct: 140 KLLMDRLPVDSITVMIQKEVADRMAAEPN--TKSYGSLSIAVQYYTKARVALNVPKTVFM 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS-FFSMVSSAFNGKRKMLRKSL-QHLCTSL--- 349
PQP VD++V+ ++++ + P +S FF +V + F +RK L +L +H +L
Sbjct: 198 PQPNVDSSVLHLEMRE--EPPVHVDDESFFFDVVKATFGQRRKTLMNNLARHFKGTLDKE 255
Query: 350 EIEKALGDVGL 360
EI L +V +
Sbjct: 256 EIRSRLAEVNI 266
>gi|408479337|ref|ZP_11185556.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. R81]
Length = 270
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 10/245 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFADKPNFNLHQGDALKFD--------FNTLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAAG 239
Query: 356 GDVGL 360
D GL
Sbjct: 240 VDGGL 244
>gi|423693908|ref|ZP_17668428.1| dimethyladenosine transferase [Pseudomonas fluorescens SS101]
gi|388001371|gb|EIK62700.1| dimethyladenosine transferase [Pseudomonas fluorescens SS101]
Length = 270
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 10/245 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKANFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAAG 239
Query: 356 GDVGL 360
D GL
Sbjct: 240 VDGGL 244
>gi|188588306|ref|YP_001919554.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska
E43]
gi|188498587|gb|ACD51723.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska
E43]
Length = 283
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 12/223 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++L+ + + + A V E D ++EIGPG G+LT LL V IE D ++
Sbjct: 21 KSLGQNFLLDESVLNDIVCGAEVNENDFIIEIGPGVGTLTAKLLQKAKRVTCIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ D+ +++ D +K M + K+VAN+P+ ++T +I +
Sbjct: 81 PILQQELGEYDKFELIHNDALKVDFNEIM--------KNEEHVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY +++ V +Y + KV +F P
Sbjct: 133 LLKENHKFESLTIMIQKEVAERINAEPNCK--EYGALSVLVQYYCNTKIVRKVSPESFMP 190
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
+PKVD+ V+ + + V K F +V + FN +RK L
Sbjct: 191 RPKVDSIVIRLD-RLSNPRVKVQDEKLLFDIVRAGFNMRRKTL 232
>gi|46906420|ref|YP_012809.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b
str. F2365]
gi|226222817|ref|YP_002756924.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|254853694|ref|ZP_05243042.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503]
gi|254933027|ref|ZP_05266386.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262]
gi|254992659|ref|ZP_05274849.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-064]
gi|255519705|ref|ZP_05386942.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-175]
gi|300764931|ref|ZP_07074920.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017]
gi|386730953|ref|YP_006204449.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Listeria
monocytogenes 07PF0776]
gi|404279739|ref|YP_006680637.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2755]
gi|404285555|ref|YP_006692141.1| dimethyladenosine transferase [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|405748532|ref|YP_006671998.1| dimethyladenosine transferase [Listeria monocytogenes ATCC 19117]
gi|405751405|ref|YP_006674870.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2378]
gi|406702961|ref|YP_006753315.1| dimethyladenosine transferase [Listeria monocytogenes L312]
gi|417318653|ref|ZP_12105226.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Listeria monocytogenes J1-220]
gi|424713051|ref|YP_007013766.1| Ribosomal RNA small subunit methyltransferase A [Listeria
monocytogenes serotype 4b str. LL195]
gi|424821917|ref|ZP_18246930.1| Ribosomal RNA small subunit methyltransferase A [Listeria
monocytogenes str. Scott A]
gi|62900545|sp|Q724M5.1|RSMA_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|259494253|sp|C1KYC1.1|RSMA_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|46879684|gb|AAT02986.1| dimethyladenosine transferase [Listeria monocytogenes serotype 4b
str. F2365]
gi|225875279|emb|CAS03976.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258607073|gb|EEW19681.1| dimethyladenosine transferase [Listeria monocytogenes FSL R2-503]
gi|293584586|gb|EFF96618.1| dimethyladenosine transferase [Listeria monocytogenes HPB2262]
gi|300514418|gb|EFK41476.1| dimethyladenosine transferase [Listeria monocytogenes FSL N1-017]
gi|328469720|gb|EGF40642.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Listeria monocytogenes J1-220]
gi|332310597|gb|EGJ23692.1| Ribosomal RNA small subunit methyltransferase A [Listeria
monocytogenes str. Scott A]
gi|384389711|gb|AFH78781.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Listeria monocytogenes 07PF0776]
gi|404217732|emb|CBY69096.1| dimethyladenosine transferase [Listeria monocytogenes ATCC 19117]
gi|404220605|emb|CBY71968.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2378]
gi|404226374|emb|CBY47779.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2755]
gi|404244484|emb|CBY02709.1| dimethyladenosine transferase [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|406359991|emb|CBY66264.1| dimethyladenosine transferase [Listeria monocytogenes L312]
gi|424012235|emb|CCO62775.1| Ribosomal RNA small subunit methyltransferase A [Listeria
monocytogenes serotype 4b str. LL195]
Length = 295
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 7/240 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + ++V+ D +K + + F + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNIQVVHGDVLKADVEEVIAEQFAKPDLP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244
>gi|398924284|ref|ZP_10661101.1| dimethyladenosine transferase [Pseudomonas sp. GM48]
gi|398173615|gb|EJM61445.1| dimethyladenosine transferase [Pseudomonas sp. GM48]
Length = 272
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKTEDRLLEIGPGQGALTQGLLSSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNSHLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|196250755|ref|ZP_03149442.1| dimethyladenosine transferase [Geobacillus sp. G11MC16]
gi|196209705|gb|EDY04477.1| dimethyladenosine transferase [Geobacillus sp. G11MC16]
Length = 478
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 139/252 (55%), Gaps = 15/252 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ AA + +EIGPG G+LT L V+A E D +
Sbjct: 208 KKSLGQNFLIDTNILRKIVDAAGISGDTGAIEIGPGIGALTEQLARRAKKVVAFEIDSRL 267
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D ++++ +D +K + + + F + VVAN+P+ ++T +I
Sbjct: 268 LPILADTLSAYDNVRIIHQDVLKADLHAVIAEEF----AEVSDRMVVANLPYYVTTPIIM 323
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q+E A RL +P T +Y + I V +Y+E E VPRT F
Sbjct: 324 KLLTERLPIRGMVVMMQKEVADRLAAKPG--TKDYGSLTIAVQYYTEAEVVMTVPRTVFM 381
Query: 295 PQPKVDAAVVTFKLKQATDYP-AVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC-----TS 348
PQP VD+AV+ +L + + P AV + FF +V ++F +RK L +L +
Sbjct: 382 PQPNVDSAVI--RLTKRSHPPVAVEDEEVFFQVVRASFAQRRKTLLNNLLNNLPDGKEKK 439
Query: 349 LEIEKALGDVGL 360
+IE+AL VG+
Sbjct: 440 EQIERALDAVGI 451
>gi|373859308|ref|ZP_09602038.1| dimethyladenosine transferase [Bacillus sp. 1NLA3E]
gi|372450977|gb|EHP24458.1| dimethyladenosine transferase [Bacillus sp. 1NLA3E]
Length = 293
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 12/230 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A + E +EIGPG G+LT L + V+A E DQ +
Sbjct: 23 KKSLGQNFLIDPNILKRIVDHAEITEETGTIEIGPGIGALTEQLARSSKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E ++V+ +D +K +++ M E R S VVAN+P+ ++T +I
Sbjct: 83 LPILNETLDPYSNVEVIHQDVLKADVKTVM----EDRLSDIKDVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ P T +Y ++I V +Y++ E VP+T F
Sbjct: 139 KLLEEKLPIRGIVVMLQKEVAERITANPG--TKDYGSLSIAVQYYTKAEIVMTVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSL 342
PQP VD+AV+ +++ P VT FF ++ +F +RK + +L
Sbjct: 197 PQPNVDSAVIRLTVREN---PPVTMIDEAFFFRVIKMSFAQRRKTILNNL 243
>gi|224475635|ref|YP_002633241.1| dimethyladenosine transferase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|254807884|sp|B9DLD0.1|RSMA_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|222420242|emb|CAL27056.1| ribosomal RNA adenine dimethylase [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 296
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 7/241 (2%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
+AL K +F +KSLGQ+++++ I ++ A+ + E V+E+GPG GSLT L
Sbjct: 13 RALLDKYQFDFKKSLGQNFLIDVNIIQKIIDASNIDERTGVIEVGPGMGSLTEQLAKHAK 72
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+A E DQ ++ ++ + + D + V+ ED +K + + + S VVAN
Sbjct: 73 KVVAFEIDQRLIPVLEDTLSDYDNVTVINEDILKADV----VEAVQTHLSDCDKIMVVAN 128
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
+P+ I+T ++ L+ V+++Q+E RL + T Y ++I +Y+E
Sbjct: 129 LPYYITTPILLNLMSKSLPIDGYVVMMQKEVGERL-NAEIGTKAYGSLSIVAQYYTETSK 187
Query: 285 KFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
VP+T F P P VD+ VV +QA AV FF M +AF+ +RK + + Q
Sbjct: 188 VLTVPKTVFMPPPNVDSIVVKLMKRQAP-IVAVDDEDQFFKMTKAAFSQRRKTIANNYQS 246
Query: 345 L 345
L
Sbjct: 247 L 247
>gi|256545786|ref|ZP_05473142.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170]
gi|256398482|gb|EEU12103.1| dimethyladenosine transferase [Anaerococcus vaginalis ATCC 51170]
Length = 282
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ D++ + V+ G+ +LEIGPG G+++ + ++ IE D+ ++
Sbjct: 23 KSLGQNFLVDKNFVDKIIDLSEVK-GENILEIGPGIGTISQEMAKTCKKLVVIEIDKTLI 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + ++++ D +K ++ + K KVV+N+P+ I+T +I++
Sbjct: 82 PILNDNLGEFSNVEIINADILKTDLKK-----IAKEKFDGEDFKVVSNLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L ++ +++Q+E A R+ + ++ +Y +++F+ +Y+E +FKVP++ F PQ
Sbjct: 137 LFEEDLSCKDMTIMVQKEVADRM-KADEKSKDYSSLSVFIKYYAEIIGQFKVPKSVFMPQ 195
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALG 356
PK+D+ V+ L+ Y +T + F++V + FN +RK + SL + +++ L
Sbjct: 196 PKIDSQVLKLNLRL---YDENVNTNTLFNVVRAGFNKRRKTILNSLSSVIEKENLKEILE 252
Query: 357 DVGLPATAAAD 367
++ L A+
Sbjct: 253 NLSLKENLRAE 263
>gi|76787342|ref|YP_330398.1| dimethyladenosine transferase [Streptococcus agalactiae A909]
gi|77406268|ref|ZP_00783335.1| dimethyladenosine transferase [Streptococcus agalactiae H36B]
gi|406710172|ref|YP_006764898.1| dimethyladenosine transferase [Streptococcus agalactiae
GD201008-001]
gi|424048759|ref|ZP_17786310.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae ZQ0910]
gi|119365850|sp|Q3JZA5.1|RSMA_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|76562399|gb|ABA44983.1| dimethyladenosine transferase [Streptococcus agalactiae A909]
gi|77175121|gb|EAO77923.1| dimethyladenosine transferase [Streptococcus agalactiae H36B]
gi|389649780|gb|EIM71255.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae ZQ0910]
gi|406651057|gb|AFS46458.1| dimethyladenosine transferase [Streptococcus agalactiae
GD201008-001]
Length = 290
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 137/263 (52%), Gaps = 15/263 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + A D ++V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSS-AFNGKRKM 337
+ F VPRT F P P VD+ ++ + D P V+ + FF VS AF +RK
Sbjct: 180 MTAKVSFIVPRTVFVPAPNVDSVILKMVRR---DQPVVSVQDEDFFFRVSKVAFVHRRKT 236
Query: 338 LRKSL-QHLC----TSLEIEKAL 355
L +L H T ++EKAL
Sbjct: 237 LWNNLTSHFGKSEDTKAKLEKAL 259
>gi|290892256|ref|ZP_06555251.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071]
gi|404406642|ref|YP_006689357.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2376]
gi|290558082|gb|EFD91601.1| dimethyladenosine transferase [Listeria monocytogenes FSL J2-071]
gi|404240791|emb|CBY62191.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2376]
Length = 295
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 137/263 (52%), Gaps = 12/263 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + ++V+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVQVVHGDVLKADVEEVVAEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244
Query: 343 QHLCTSL-----EIEKALGDVGL 360
+L E+ + L +G+
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGI 267
>gi|225869784|ref|YP_002745731.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047]
gi|254807885|sp|C0M8P2.1|RSMA_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|225699188|emb|CAW92442.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047]
Length = 290
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 14/265 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKSILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D ++V+ +D +K +++ + ++ S+
Sbjct: 65 AERAAEVMAFEIDERLVPILADTLRDFDNVQVVNQDILKADLQTQL-----KQFSNPDLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQ 177
Query: 278 FYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKR 335
+Y + F VPRT F P P VD+A++ + D P V FF + F +R
Sbjct: 178 YYMTAKIAFVVPRTVFVPAPNVDSAILKMTRR---DQPLIEVQDEDFFFRVSRVGFVHRR 234
Query: 336 KMLRKSLQHLCTSLEIEKALGDVGL 360
K L +L E KA + GL
Sbjct: 235 KTLWNNLVSHFGKAEDTKARLEQGL 259
>gi|434387825|ref|YP_007098436.1| dimethyladenosine transferase [Chamaesiphon minutus PCC 6605]
gi|428018815|gb|AFY94909.1| dimethyladenosine transferase [Chamaesiphon minutus PCC 6605]
Length = 284
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 135/237 (56%), Gaps = 20/237 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQH++ N ++ D++ AA + D +LEIGPGTG LT L+ A + V+A+E D+ +
Sbjct: 4 KKQFGQHWLRNEQVLDRIITAAKIAPTDRILEIGPGTGILTRRLVAAASAVVAVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ +D +L+ DF+ + + L+ F + + ++ KVVANIP+NI+ +++
Sbjct: 64 SALLVKKMGHLDNFILLENDFLNLDVDGN-LTAFPKFQQAN---KVVANIPYNITGPILE 119
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+LL P F +VLL+Q+E RL +PS T + ++I V + + E VP
Sbjct: 120 KLLGNIVHPAERPFDSIVLLVQKEVGDRLFAKPS--TKAFGALSIRVQYLAHCELICPVP 177
Query: 290 RTNFFPQPKVDAAVVTF---KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
+F P PKVD+AV+ +L+ + P K ++V F+ +RKMLR +LQ
Sbjct: 178 ARDFSPPPKVDSAVIRLTPRRLELTANNP-----KLLNNLVRLGFSTRRKMLRNNLQ 229
>gi|359780754|ref|ZP_09283979.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas psychrotolerans L19]
gi|359370814|gb|EHK71380.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas psychrotolerans L19]
Length = 263
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 128/247 (51%), Gaps = 15/247 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A + G+ +LEIGPG G+LT LL +GA + IE DQ +
Sbjct: 10 RKRFGQNFLHDAGVIHRILRAIHGRPGERLLEIGPGQGALTKGLLGSGARLDVIELDQDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L+R +F + Q D +K + S ++ +VV N+P+NIST +I
Sbjct: 70 IPLLRLKFGLNPLFTLHQGDAMKYDLSS---------IAAGDRLRVVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL DI +++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 121 HLLSFADIIADMHFMLQKEVVERLAAVPG--NGDWGRLSIMVQYHCRVEHLFNVGPGAFN 178
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P PKVD+A+V +L T+ P V +V AF +RK LR +L+ S IE
Sbjct: 179 PPPKVDSAIV--RLVPHTERPHVARDPVLLERVVREAFGQRRKTLRNTLKGTLDSAAIEA 236
Query: 354 ALGDVGL 360
A D GL
Sbjct: 237 ADVDPGL 243
>gi|398908996|ref|ZP_10654330.1| dimethyladenosine transferase [Pseudomonas sp. GM49]
gi|398188935|gb|EJM76223.1| dimethyladenosine transferase [Pseudomonas sp. GM49]
Length = 272
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLSSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNATPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNSHLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|268608155|ref|ZP_06141882.1| dimethyladenosine transferase [Ruminococcus flavefaciens FD-1]
Length = 285
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 9/250 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++N +I ++A Q G VLEIG G G LT L V A+E D ++
Sbjct: 22 KGLGQNFIINPDICPKIAEMGNAQAGYGVLEIGTGIGVLTAELAKRADKVCAVEIDTRLL 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E + D +K+ ED +KC ++ + F+ ++ V AN+P+ I++ VI
Sbjct: 82 PILEETLSDFDNIKIFNEDIMKCDLQKLIAEEFQGLHTA-----VCANLPYYITSPVIML 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
LL + +++Q+E A RL + T + I + VN+Y + F V R +F P
Sbjct: 137 LLESKLPIDSITVMVQKEAAQRLC-AKVGTRDSGAITVGVNYYGTVKSLFNVSRGSFMPA 195
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL--CTSLEIEKA 354
P VD+AV+ L + + K FF +V S F+ +RK ++ L ++ A
Sbjct: 196 PNVDSAVIRIDL-HSEHRLSEEDEKFFFKVVKSGFSQRRKTAANAVSSLMGIPKEKVYSA 254
Query: 355 LGDVGLPATA 364
L VGLP TA
Sbjct: 255 LKAVGLPETA 264
>gi|228476972|ref|ZP_04061610.1| dimethyladenosine transferase [Streptococcus salivarius SK126]
gi|228250991|gb|EEK10162.1| dimethyladenosine transferase [Streptococcus salivarius SK126]
Length = 290
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 132/258 (51%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K +++ + K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILEDTLRDHDNVNVINEDVLKADLQTRVKEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ + Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--SKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V F + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVEVKDEDFLFRVAKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTNHFGKSEEVKAKL 255
>gi|298207337|ref|YP_003715516.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559]
gi|83849973|gb|EAP87841.1| dimethyladenosine transferase [Croceibacter atlanticus HTCC2559]
Length = 269
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 19/243 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQH++ + E +++ + + D VLEIGPGTG LT LL + A++ DQ
Sbjct: 8 KKHLGQHFLNDEETAEKIGNTLSFKGYDHVLEIGPGTGVLTKYLLEKDVALTAMDLDQES 67
Query: 176 VGLVRERFA-------SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
V +++ F+ S +VL DF+K + LF FA + N P+N
Sbjct: 68 VDYLKDHFSIEHASKISSKSFRVLYADFLKYDLS----QLF----GDEQFA-ITGNFPYN 118
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
IST ++ + L + D E + Q+E A R+ E + Y +++ + EY F V
Sbjct: 119 ISTQIVFKTLELRDQIPEFTGMFQKEVAKRICEKE-GSKAYGILSVLAQAFYNAEYLFTV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P T F P PKV++ V+ +L + DY K FF +V AF +RK LR SL+ S
Sbjct: 178 PPTVFNPPPKVESGVL--RLTRKEDYSLNVDEKLFFRVVKQAFQQRRKTLRNSLKTFQLS 235
Query: 349 LEI 351
E+
Sbjct: 236 DEL 238
>gi|418577126|ref|ZP_13141253.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379324406|gb|EHY91557.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 296
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 127/246 (51%), Gaps = 6/246 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +KSLGQ+++++ I + A+ + E ++E+GPG GSLT L + V+
Sbjct: 16 LNQYGFNFKKSLGQNFLIDVNIIHNIIDASDIDEQTGIIEVGPGMGSLTEQLAKSAKKVM 75
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ ++ ++++ D + V+ ED +K I +H ++ + VVAN+P+
Sbjct: 76 AFEIDQRLIPVLKDTMGPYDNVTVINEDILKADI-AHYVT---EHLADCEKIMVVANLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ L+ V+++Q+E RL + T Y ++I +Y+E
Sbjct: 132 YITTPILLNLMQQKLPIDGYVVMMQKEVGERL-NAQVGTKAYGSLSIVAQYYTETSKVLT 190
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
VP++ F P P VD+ VV +K+ T + FF M +AF+ +RK + + Q L
Sbjct: 191 VPKSVFLPPPNVDSIVVKL-MKRPTPIVDIDDENKFFKMTKAAFSQRRKTINNNYQSLFV 249
Query: 348 SLEIEK 353
+ ++ K
Sbjct: 250 NGKVNK 255
>gi|379706040|ref|YP_005204499.1| dimethyladenosine transferase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682739|gb|AEZ63028.1| dimethyladenosine transferase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 290
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 8/244 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I + A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQNIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILDDTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQP-LVQVKDEDFFFRVSKIGFVHRRKTL 237
Query: 339 RKSL 342
+L
Sbjct: 238 WNNL 241
>gi|322419457|ref|YP_004198680.1| dimethyladenosine transferase [Geobacter sp. M18]
gi|320125844|gb|ADW13404.1| dimethyladenosine transferase [Geobacter sp. M18]
Length = 277
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 125/232 (53%), Gaps = 15/232 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + ++ + A D +LE+GPG G+L+ +L +GA +A+E D+ +
Sbjct: 9 KKEFGQNFLVDDNVLTRIVSCVAPGTEDCILEVGPGRGALSRLLAASGARFVAVEWDRDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ + FA D++++ D ++ + + + RK KV AN+P+NIS+ V+
Sbjct: 69 IPFLNSEFAGNDRVEIGHGDILRVDLHQILTTRAPGRK-----WKVAANLPYNISSQVLF 123
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+ + D+F +VL+LQ+E RL P +Y + + + + + +F V +F P
Sbjct: 124 KFMEDCDLFEGLVLMLQKEVGDRLTAPP-GCKDYGALTVLLRLHFDIRREFIVKPGSFRP 182
Query: 296 QPKVDAAVVTFKLKQATDYPA----VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
PKVD+AV++F T PA V + F +V AFN +RK L SL+
Sbjct: 183 IPKVDSAVLSF-----TPLPAPRVEVGDEELFRRLVKGAFNQRRKTLLNSLR 229
>gi|398866845|ref|ZP_10622319.1| dimethyladenosine transferase [Pseudomonas sp. GM78]
gi|398238858|gb|EJN24579.1| dimethyladenosine transferase [Pseudomonas sp. GM78]
Length = 272
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLSSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FTSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNAHLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|403387590|ref|ZP_10929647.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium sp. JC122]
Length = 283
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 135/247 (54%), Gaps = 15/247 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + + + + AAV + D ++EIGPG G+LT LL+ V +IE D ++
Sbjct: 19 KSLGQNFLTDDTVLEDIVSGAAVCKDDYIIEIGPGVGTLTVELLDRAKRVTSIELDDRLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E + ++ +D +K + + L KS KVVAN+P+ ++T +I
Sbjct: 79 PILTEELKDYETFNLIHKDALKVNYK----ELIGDEKS----VKVVANLPYYVTTPIIAN 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ +PS T +Y ++ V +Y + +VP + F P
Sbjct: 131 LLNGEYNFKSLTIMIQKEVAERIDAQPS--TKDYGAFSLLVQYYCDTAIIRRVPPSCFIP 188
Query: 296 QPKVDAAVVTF-KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
PKVD+ V+ KL++ +V K FF+++ +FN +RK L ++++ E +EK
Sbjct: 189 SPKVDSIVIRLDKLEKPR--ISVKDEKLFFNVIRQSFNMRRKTLWNGMKNIGLEKEKLEK 246
Query: 354 ALGDVGL 360
A G+
Sbjct: 247 AFNVAGI 253
>gi|423137178|ref|ZP_17124821.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
nucleatum subsp. animalis F0419]
gi|371960654|gb|EHO78305.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
nucleatum subsp. animalis F0419]
Length = 264
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 127/234 (54%), Gaps = 13/234 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ V IE D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVERVKKVTCIEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ ++ ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYTLVMGDVLEVDLKKYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S + E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKSGK--ERGILTLAVEYYGEAEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P P VD+A ++ K + Y S +F V +AF+ KRK + +L L S
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSHKRKNIVNNLATLGYS 227
>gi|336401400|ref|ZP_08582170.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium sp.
21_1A]
gi|336161068|gb|EGN64081.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium sp.
21_1A]
Length = 264
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 134/254 (52%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ V IE D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIDVSNINKNDEILEIGPGQGALTSLLVERVKKVTCIEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +++ +F S + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENILKRKFFSKENYTLVMGDVLEVDLRKYI---------NKG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGEAEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S +F V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + + A+
Sbjct: 234 ILNQIEVSENERAE 247
>gi|418964698|ref|ZP_13516488.1| dimethyladenosine transferase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383344576|gb|EID22737.1| dimethyladenosine transferase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 291
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 139/271 (51%), Gaps = 21/271 (7%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKHVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDERLMPILADTLQEFENVKIINEDILKSDLQAWIKEF----ANPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESRIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ + D PAV FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRR---DKPAVEVKDEPFFFKVSKASFTHRRK 235
Query: 337 MLRKSL-------QHLCTSLEIEKALGDVGL 360
L +L + T LEI AL + L
Sbjct: 236 TLWNNLTSCFGKSDEIKTRLEI--ALNNADL 264
>gi|373465297|ref|ZP_09556770.1| dimethyladenosine transferase [Lactobacillus kisonensis F0435]
gi|371760921|gb|EHO49581.1| dimethyladenosine transferase [Lactobacillus kisonensis F0435]
Length = 296
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 15/250 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + + AA + D V+EIGPG G LT L VL E DQ++
Sbjct: 25 KKSLGQNFLVDLNVLSNIVEAAEITGDDDVIEIGPGIGGLTEQLAKVAHRVLGFEIDQNL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A +K++ +D +K +++ + + + KVVAN+P+ I+T ++
Sbjct: 85 LPVLQETLAPYSNIKIINQDILK----ANLPQVVKTELTGKHPLKVVANLPYYITTPIVM 140
Query: 236 QLLPMGDI-FSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
LL GD+ F +V+++Q+E A RL P T Y +++ V + E F VPRT F
Sbjct: 141 NLL-AGDLAFDAIVVMMQKEVAERLTAVPG--TKAYGSLSVIVQERNNVEISFIVPRTAF 197
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE--- 350
PQPKVD+A++ K A + K F V F +RK L +L +
Sbjct: 198 IPQPKVDSAIIKLTPKLAKEVVPF-DEKRFAGFVRGCFMHQRKTLWNNLLGFFGKTDAAK 256
Query: 351 --IEKALGDV 358
I K L DV
Sbjct: 257 ETITKVLADV 266
>gi|313896764|ref|ZP_07830312.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312974681|gb|EFR40148.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 291
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 10/227 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + V+ D +K +I L L E ++ KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLRGYDNVTVVPGDILKINI-PETLGLKEGQRF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A+R+ +P + +Y +++ V +++ P VP F P
Sbjct: 141 LLEQRLPIERLVTMVQKEVAMRMTAQPG--SKDYGALSLAVQYFTAPRMVMDVPPRAFRP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P+V +AVV ++++ A S K FF ++ +AF +RK L +L
Sbjct: 199 APEVTSAVVACIVRESPSV-APRSEKLFFRLIRAAFGQRRKTLPNAL 244
>gi|320530094|ref|ZP_08031164.1| dimethyladenosine transferase [Selenomonas artemidis F0399]
gi|320137527|gb|EFW29439.1| dimethyladenosine transferase [Selenomonas artemidis F0399]
Length = 291
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 10/227 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + V+ D +K +I L L E ++ KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLRGYDNVTVVPGDILKINI-PETLGLKEGQRF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A+R+ +P + +Y +++ V +++ P VP F P
Sbjct: 141 LLEQRLPIERLVTMVQKEVAMRMTAQPG--SKDYGALSLAVQYFTAPRMVMDVPPRAFRP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P+V +AVV ++++ A S K FF ++ +AF +RK L +L
Sbjct: 199 APEVTSAVVACIVRESPSV-APRSEKLFFRLIRAAFGQRRKTLPNAL 244
>gi|450161099|ref|ZP_21880365.1| dimethyladenosine transferase [Streptococcus mutans 66-2A]
gi|449239184|gb|EMC37913.1| dimethyladenosine transferase [Streptococcus mutans 66-2A]
Length = 291
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 139/275 (50%), Gaps = 19/275 (6%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L+ G +K+ GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILDRHGFTFKKTFGQNFLTDTNILQKIVDTAEIDKNTNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ R K S A
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQT-------RIKEFSNPA 117
Query: 220 ---KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIF 275
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIA 175
Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKR 335
V +Y + F VPRT F P P VD+A++ ++ V FF + + F +R
Sbjct: 176 VQYYMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKATFVHRR 234
Query: 336 KMLRKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
K L +L H S E++ L A AAD K
Sbjct: 235 KTLWNNLTSHFGKSEEVKDKLEQ----ALEAADIK 265
>gi|397649082|ref|YP_006489609.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Streptococcus
mutans GS-5]
gi|392602651|gb|AFM80815.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus mutans GS-5]
Length = 291
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDADFFFCVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|426411834|ref|YP_007031933.1| dimethyladenosine transferase [Pseudomonas sp. UW4]
gi|426270051|gb|AFY22128.1| dimethyladenosine transferase [Pseudomonas sp. UW4]
Length = 272
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLSSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 IPILNQQFADKSNFNLHQGDALKFD--------FNSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNSHLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAELPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|78187147|ref|YP_375190.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273]
gi|119365044|sp|Q3B3D4.1|RSMA_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78167049|gb|ABB24147.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273]
Length = 273
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 18/229 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQ+++ + I ++ AA+ D +LEIGPG G+LT +L +EKD+ +
Sbjct: 14 KKKLGQNFLTDRNITRKIVAASGAGSQDRILEIGPGFGALTREILEVCPAFTVVEKDRAL 73
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+R+ + QL++++ DF+ + R ++ G +V+ NIP++I+T ++
Sbjct: 74 AAFIRQEYP---QLQLIEADFLDIDL---------ERLAAGGPLRVLGNIPYSITTPILF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL + L++Q E A RLV PS T EY + + + + + Y FKV R F
Sbjct: 122 KLLENRRSITSATLMMQHEVAARLVATPS--TKEYGILAVQLQTFCDVRYLFKVGRKVFR 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
PQP VD+AV++ K+ AV ++F V +AF+ +RK L +L+
Sbjct: 180 PQPNVDSAVISMVPKKNV---AVEDAQAFSRFVRTAFHQRRKTLYNNLK 225
>gi|332686219|ref|YP_004455993.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311]
gi|332370228|dbj|BAK21184.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311]
Length = 294
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A A + + V+E+GPG G+LT L VLA E D ++
Sbjct: 25 KKSLGQNFLTEPNILKKIVATANLTKEVNVIEVGPGIGALTEQLAQQAGQVLAFEIDHNL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++ +D +K + ++F++ K+VAN+P+ I+T ++
Sbjct: 85 IRILADTLQPYNNITIVNQDVLKTDLVKETQAVFQQAYP----IKIVANLPYYITTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L I E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 YFLQSDLIVEEMVVMMQKEVADRISAKPG--TKAYGSLSIAVQYFMEATIAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+AV+ +++ V + K FF + +AF +RK L +L H
Sbjct: 199 PQPNVDSAVIKLT-RRSKPIVDVINEKEFFKLTRAAFQLRRKTLWNNLLHF 248
>gi|340753809|ref|ZP_08690583.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium sp.
2_1_31]
gi|422315714|ref|ZP_16397137.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
periodonticum D10]
gi|229423362|gb|EEO38409.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium sp.
2_1_31]
gi|404592089|gb|EKA94022.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
periodonticum D10]
Length = 264
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 125/234 (53%), Gaps = 13/234 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + E D +LEIGPG G+LTN+L+ + +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNIDENDEILEIGPGQGALTNLLVERAKKLTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ D ++ + ++ + G KVVANIP+ I++ +I
Sbjct: 66 LEAGLRKKFSSKENYTLVMGDVLEVDLTKYL---------NKG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ ++ E +++Q+E R+ + E + + V +Y E +Y F +PR F
Sbjct: 116 NKLIENKELIDEAYIMVQKEVGERICAKA--GKERSILTLAVEYYGEADYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P P VD+A ++ K + Y S FF + +AF+ KRK + +L L S
Sbjct: 174 PVPNVDSAFISIKFYKDDRYKNKISEDLFFKYIKAAFSNKRKNIVNNLATLGYS 227
>gi|357059271|ref|ZP_09120114.1| dimethyladenosine transferase [Selenomonas infelix ATCC 43532]
gi|355372174|gb|EHG19516.1| dimethyladenosine transferase [Selenomonas infelix ATCC 43532]
Length = 289
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 14/241 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDRGVVQGIVDAAELSPADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + ++ D +K +I + R + KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLKGYDNVTIVPGDILKLNIMETL------RLRAGERCKVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V ++Q+E A+R+ P + +Y ++I V +++ P V +F P
Sbjct: 141 LLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSIAVQYFTVPRMVMDVSPGSFLP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P+V +AV+ ++ D P V T K FF +V +AF +RK L +L S E+ +
Sbjct: 199 APEVTSAVIACHVQ---DVPTVQPTDEKLFFRLVRAAFMQRRKTLLNALTGAGISKEMSR 255
Query: 354 A 354
A
Sbjct: 256 A 256
>gi|167760646|ref|ZP_02432773.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704]
gi|336422399|ref|ZP_08602547.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 5_1_57FAA]
gi|167661771|gb|EDS05901.1| dimethyladenosine transferase [Clostridium scindens ATCC 35704]
gi|336008778|gb|EGN38786.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 5_1_57FAA]
Length = 291
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 128/230 (55%), Gaps = 9/230 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ AA + + D+VLEIGPG G++T L A V+A+E D+++
Sbjct: 24 QKKFGQNFLIDTHVLDKIIRAADIGKDDMVLEIGPGIGTMTQYLAEAAGKVIAVEIDKNL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++++ ED +K I+ L E + KVVAN+P+ I+T +I
Sbjct: 84 IPILTDTLSGYENVQIINEDVLKLDIQ----RLVEEENAGRPI-KVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L V +++Q+E A R+ + +Y +++ V +Y+EP VP F P
Sbjct: 139 GLFESHVPLYSVTVMVQKEVADRM-QTGPGNKDYGALSLAVQYYAEPYIVANVPPNCFMP 197
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
+PKV +AV+ +L + P V + F ++ ++FN +RK L L +
Sbjct: 198 RPKVGSAVI--RLTRYEKPPVEVEDERLLFDIIRASFNQRRKTLANGLNN 245
>gi|387784913|ref|YP_006070996.1| dimethyladenosine transferase [Streptococcus salivarius JIM8777]
gi|338745795|emb|CCB96161.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Streptococcus
salivarius JIM8777]
Length = 290
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 132/258 (51%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K +++ + K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILEDTLRDHDNVNVINEDVLKADLQTRVNEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ + Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--SKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V F + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVEVKDEDFLFRVAKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTNHFGKSEEVKAKL 255
>gi|163753725|ref|ZP_02160848.1| dimethyladenosine transferase [Kordia algicida OT-1]
gi|161325939|gb|EDP97265.1| dimethyladenosine transferase [Kordia algicida OT-1]
Length = 260
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 13/228 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQH++ + E+ ++A + VLEIGPG G LT LL T E D
Sbjct: 8 KKHLGQHFLKDEEVAQRIADTLTLNHYKNVLEIGPGMGVLTKYLLEKPVTTYVCEIDTES 67
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + + K+L+EDF+K ++ FA ++ N P+NIST ++
Sbjct: 68 VAYLKAHYLQLSN-KILEEDFLKYDLKKTF--------KDEPFA-IIGNFPYNISTQIVF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+ L M D E + Q+E A R+ P + Y +++ + + EY F VP F P
Sbjct: 118 KTLEMRDQIPEFSGMFQKEVAQRICAPHGNKT-YGILSVLTQAFYDAEYLFTVPPNVFKP 176
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
PKVD+ V+ +L + +Y K FF +V +AF +RK LR SL+
Sbjct: 177 PPKVDSGVM--RLIRKENYTLPCEEKLFFRVVKTAFQQRRKTLRNSLK 222
>gi|315037470|ref|YP_004031038.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112]
gi|312275603|gb|ADQ58243.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112]
Length = 294
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 128/247 (51%), Gaps = 14/247 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + +A +Q GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQAAILGIVESAYIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERF------ASIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ A +D+ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L F+ + L++Q+E A RL E EY P+ I V + +V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGNKEYGPLTISVQTEMNVKLALEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
++F P+PKVD+AVV L + PA+ K F +V F+ +RK L +L+ L
Sbjct: 200 KSSSFMPRPKVDSAVVV--LTPLAEKPAINDRKHFIWVVKMCFSQRRKTLNNNLKTLIPD 257
Query: 349 LEIEKAL 355
+ AL
Sbjct: 258 NDQRAAL 264
>gi|227876332|ref|ZP_03994445.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243]
gi|269976092|ref|ZP_06183091.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1]
gi|227843105|gb|EEJ53301.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35243]
gi|269935685|gb|EEZ92220.1| dimethyladenosine transferase [Mobiluncus mulieris 28-1]
Length = 303
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 31/287 (10%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K GQ+++ + ++AA A++ ++VLEIGPG GSLT LL GA V+A+E D
Sbjct: 21 PSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGSLTLALLETGARVIAVEIDSR 80
Query: 175 MVG----LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF---AKVVANIPF 227
+ VR ++ L +V C H+ S R + +G+ +VAN+P+
Sbjct: 81 LAAALPTTVRVHEGLVENL------YVSCADALHLDST-SRVMTDTGWPPPVALVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
N++T ++ +L + + +++Q E A RLV + S Y ++ + ++ F
Sbjct: 134 NVATPILLHILEVMPEINRAQVMVQAEVADRLVA-RVGDSAYGAPSVKLAWWGCARRAFG 192
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS---------FFSMVSSAFNGKRKML 338
V R F P P VD+ VV F+ + +P V S + F +++AF +RK L
Sbjct: 193 VSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQRSFEFITAAFGMRRKTL 252
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPAT--AAADYKFPITLPSTE 378
R+SL LC S + +EKA D GL A AD+ + + STE
Sbjct: 253 RQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARVESTE 299
>gi|449887770|ref|ZP_21787022.1| dimethyladenosine transferase [Streptococcus mutans SA41]
gi|449915751|ref|ZP_21796467.1| dimethyladenosine transferase [Streptococcus mutans 15JP3]
gi|449941032|ref|ZP_21805345.1| dimethyladenosine transferase [Streptococcus mutans 11A1]
gi|449997089|ref|ZP_21823822.1| dimethyladenosine transferase [Streptococcus mutans A9]
gi|450010441|ref|ZP_21828679.1| dimethyladenosine transferase [Streptococcus mutans A19]
gi|450024506|ref|ZP_21831266.1| dimethyladenosine transferase [Streptococcus mutans U138]
gi|450039712|ref|ZP_21836340.1| dimethyladenosine transferase [Streptococcus mutans T4]
gi|450125201|ref|ZP_21867540.1| dimethyladenosine transferase [Streptococcus mutans U2A]
gi|449152541|gb|EMB56246.1| dimethyladenosine transferase [Streptococcus mutans 11A1]
gi|449156077|gb|EMB59561.1| dimethyladenosine transferase [Streptococcus mutans 15JP3]
gi|449182417|gb|EMB84442.1| dimethyladenosine transferase [Streptococcus mutans A9]
gi|449190163|gb|EMB91756.1| dimethyladenosine transferase [Streptococcus mutans A19]
gi|449191945|gb|EMB93393.1| dimethyladenosine transferase [Streptococcus mutans U138]
gi|449200054|gb|EMC01101.1| dimethyladenosine transferase [Streptococcus mutans T4]
gi|449232774|gb|EMC31871.1| dimethyladenosine transferase [Streptococcus mutans U2A]
gi|449252158|gb|EMC50145.1| dimethyladenosine transferase [Streptococcus mutans SA41]
Length = 291
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFCVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|237744029|ref|ZP_04574510.1| dimethyladenosine transferase [Fusobacterium sp. 7_1]
gi|229431258|gb|EEO41470.1| dimethyladenosine transferase [Fusobacterium sp. 7_1]
Length = 264
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 135/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ V +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNISDNDEILEIGPGQGALTSLLVERVKKVTCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++R++F+ + ++ D ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENILRKKFSLKENYTLVMGDVLEVDLRRYL---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENRDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGEAEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S +F V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLYFKYVKAAFSNKRKNIVNNLATLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + + A+
Sbjct: 234 ILNQIEVSENERAE 247
>gi|104773499|ref|YP_618479.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513494|ref|YP_812400.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|118600873|sp|Q1GBR1.1|RSMA_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|122275736|sp|Q04C60.1|RSMA_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|103422580|emb|CAI97183.1| Dimethyladenosine transferase (16S rRNA dimethylase) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116092809|gb|ABJ57962.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 296
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 133/255 (52%), Gaps = 19/255 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 25 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALE 198
Query: 288 VPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L
Sbjct: 199 VGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLL 255
Query: 347 TSLEI-EKALGDVGL 360
E EK L D+ L
Sbjct: 256 PDKEDREKLLADLDL 270
>gi|449930376|ref|ZP_21802053.1| dimethyladenosine transferase [Streptococcus mutans 3SN1]
gi|449163627|gb|EMB66726.1| dimethyladenosine transferase [Streptococcus mutans 3SN1]
Length = 291
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFCVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|395796297|ref|ZP_10475595.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Ag1]
gi|421139613|ref|ZP_15599647.1| dimethyladenosine transferase [Pseudomonas fluorescens BBc6R8]
gi|395339599|gb|EJF71442.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Ag1]
gi|404509185|gb|EKA23121.1| dimethyladenosine transferase [Pseudomonas fluorescens BBc6R8]
Length = 270
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLKSGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGMPNFNLHQGDALKFD--------FTSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAA 238
>gi|226500226|ref|NP_001150423.1| LOC100284053 [Zea mays]
gi|195639144|gb|ACG39040.1| dimethyladenosine transferase [Zea mays]
gi|413935817|gb|AFW70368.1| dimethyladenosine transferase [Zea mays]
Length = 354
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 122/243 (50%), Gaps = 25/243 (10%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H +G P KS GQH + N + D + A A ++ D VLEIGPGTG+LT LL
Sbjct: 11 HGAAGGARLQGGIPFEKSKGQHILRNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLL 70
Query: 161 NAGA-TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216
AG V+A+E D MV + RF +LKV+Q D +KC +
Sbjct: 71 EAGVKAVVAVELDPRMVLELNRRFQGHPLSSRLKVIQGDVLKCDLPY------------- 117
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIF 275
F VANIP+ IS+ + +LL IF V++ Q E A+RLV +P S Y +++
Sbjct: 118 -FDICVANIPYQISSPLTFKLLSHRPIFRCAVIMFQREFAMRLVAQPG--DSLYCRLSVN 174
Query: 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKR 335
V S + KV R NF P PKVD++VV +++ P V S K + +V FN K
Sbjct: 175 VQLLSRVSHLLKVGRNNFRPPPKVDSSVV--RIEPRKPLPPV-SFKEWDGLVRICFNRKN 231
Query: 336 KML 338
K L
Sbjct: 232 KTL 234
>gi|187933536|ref|YP_001884370.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund
17B]
gi|187721689|gb|ACD22910.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund
17B]
Length = 283
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 12/223 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++L+ + + + A V E D ++EIGPG G+LT LL V IE D ++
Sbjct: 21 KSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLLQKAKMVTCIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ D+ +++ D +K M + K+VAN+P+ ++T +I +
Sbjct: 81 PILQQELGEYDKFELIHNDALKVDFNEIM--------KNEEHVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY +++ V +Y + KV +F P
Sbjct: 133 LLKENHKFESLTIMIQKEVAERINAEPNCK--EYGALSVLVQYYCNTKIVRKVSPESFMP 190
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
+PKVD+ V+ + + V K F +V + FN +RK L
Sbjct: 191 RPKVDSIVIRLD-RLSNPRVKVQDEKLLFDIVRAGFNMRRKTL 232
>gi|307701523|ref|ZP_07638541.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16]
gi|307613315|gb|EFN92566.1| dimethyladenosine transferase [Mobiluncus mulieris FB024-16]
Length = 303
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 31/287 (10%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K GQ+++ + ++AA A++ ++VLEIGPG GSLT LL GA V+A+E D
Sbjct: 21 PSKKRGQNFVTDPGTVRRIAAGASLSSAEVVLEIGPGLGSLTLALLETGARVIAVEIDSR 80
Query: 175 MVG----LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF---AKVVANIPF 227
+ VR ++ L +V C H+ S R + +G+ +VAN+P+
Sbjct: 81 LAAALPTTVRVHEGLVENL------YVSCADALHLDST-SRVMTDTGWPPPVALVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
N++T ++ +L + + +++Q E A RLV + S Y ++ + ++ F
Sbjct: 134 NVATPILLHILEVMPEINRAQVMVQAEVADRLVA-RVGDSAYGAPSVKLAWWGCARRAFG 192
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS---------FFSMVSSAFNGKRKML 338
V R F P P VD+ VV F+ + +P V S + F +++AF +RK L
Sbjct: 193 VSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQRSFEFITAAFGMRRKTL 252
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPAT--AAADYKFPITLPSTE 378
R+SL LC S + +EKA D GL A AD+ + + STE
Sbjct: 253 RQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARVESTE 299
>gi|401564955|ref|ZP_10805813.1| dimethyladenosine transferase [Selenomonas sp. FOBRC6]
gi|400188317|gb|EJO22488.1| dimethyladenosine transferase [Selenomonas sp. FOBRC6]
Length = 292
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 20/255 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + A + DIVLEIGPG G+LT L +GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDRSVVQGIVDTAELSPADIVLEIGPGIGTLTQGLAESGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSSGFAKVVANIPFNISTDVIK 235
++ E + ++ D +K +I M L ER KVVAN+P+ I+T +I
Sbjct: 87 TVLAETLKGYANVTIVPGDILKLNIPETMGLRAGER-------FKVVANLPYYITTPIIM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL +V ++Q+E A+R+ P + +Y +++ V +++ P VP +F
Sbjct: 140 TLLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSVAVQYFTVPRMVMDVPPRSFL 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
P P+V +AV+ ++ D P V K FF +V +AF +RK L +L + E+
Sbjct: 198 PAPEVTSAVIACHVQ---DVPTVQPHDEKLFFRLVRAAFGQRRKTLLNALTGAGLTKEMS 254
Query: 353 KALGDVGLPATAAAD 367
+A GL AT A+
Sbjct: 255 RA----GLAATGIAE 265
>gi|399000542|ref|ZP_10703268.1| dimethyladenosine transferase [Pseudomonas sp. GM18]
gi|398129769|gb|EJM19125.1| dimethyladenosine transferase [Pseudomonas sp. GM18]
Length = 272
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 126/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTAGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNASLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|56751211|ref|YP_171912.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301]
gi|81299122|ref|YP_399330.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942]
gi|62900470|sp|Q5N2S8.1|RSMA_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|119365855|sp|Q31RH6.1|RSMA_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|56686170|dbj|BAD79392.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301]
gi|81168003|gb|ABB56343.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942]
Length = 279
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 136/248 (54%), Gaps = 16/248 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I D++ AAA ++ D VLEIGPG G+LT LL A ++A+E D+ +
Sbjct: 4 RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+G +++RF + +L+ D ++ + + R + +KVVANIP+NI+ +++
Sbjct: 64 IGQLQQRFGQAENFCLLEGDILQLDWTAAIAD----RPRFANPSKVVANIPYNITGPILQ 119
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVP 289
LL P F +VLL+Q+E A RL P R Y +++ V + + E VP
Sbjct: 120 SLLGTIAQPRRPAFERLVLLVQQEVADRLCATPGQRA--YGALSVRVQYLASCERVCAVP 177
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCTS 348
+F P PKV + V+ K + +P V + +++ F+ KRKMLR +L+ L +S
Sbjct: 178 PKSFSPPPKVQSTVICLKPR---PWPQVCNNPGRLEKLLNQGFSAKRKMLRNNLKSLYSS 234
Query: 349 LEIEKALG 356
+IE A
Sbjct: 235 EQIEAAFA 242
>gi|226325806|ref|ZP_03801324.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758]
gi|225205930|gb|EEG88284.1| dimethyladenosine transferase [Coprococcus comes ATCC 27758]
Length = 294
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + D++ AA + + D VLEIGPG G++T L A V A+E D+ +
Sbjct: 24 QKKFGQNFLIDEHVLDKIIRAAEITKDDYVLEIGPGIGTMTQYLACAAREVTAVEIDRAL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ ED +K I + + K+ KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLKEYDNVSIINEDILKVDIAA-----LAKEKNGGRPIKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P T +Y +++ V +Y+EP VP F
Sbjct: 139 GLFESHVPLESITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYAEPYIVANVPPNCFM 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+P V +AV+ Q V K F ++ ++FN +RK L L++
Sbjct: 197 PRPAVGSAVIRLTRHQKPPV-EVMDEKLMFRLIRASFNQRRKTLANGLKN 245
>gi|195977405|ref|YP_002122649.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225869264|ref|YP_002745212.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus]
gi|226732627|sp|B4U0U9.1|RSMA_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|259494258|sp|C0MF36.1|RSMA_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|195974110|gb|ACG61636.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225702540|emb|CAX00496.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus]
Length = 290
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 14/265 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D ++V+ +D +K +++ + ++ S+
Sbjct: 65 AERAAEVMAFEIDERLVPILADTLRDFDNVQVVNQDILKADLQTQL-----KQFSNPDLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQ 177
Query: 278 FYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKR 335
+Y + F VPRT F P P VD+A++ + D P V FF + F +R
Sbjct: 178 YYMTAKIAFVVPRTVFVPAPNVDSAILKMTRR---DQPLIEVQDEDFFFRVSRVGFVHRR 234
Query: 336 KMLRKSLQHLCTSLEIEKALGDVGL 360
K L +L E KA + GL
Sbjct: 235 KTLWNNLVSHFGKAEDTKARLEQGL 259
>gi|294012542|ref|YP_003546002.1| dimethyladenosine transferase [Sphingobium japonicum UT26S]
gi|292675872|dbj|BAI97390.1| dimethyladenosine transferase [Sphingobium japonicum UT26S]
Length = 280
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 133/247 (53%), Gaps = 23/247 (9%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++L+ ++ D++AA EG E+GPG G LT +L AGA ++A+E+D+ +
Sbjct: 25 KALGQNFLLDEQLLDRIAAIPGPLEGQPAFEVGPGPGGLTRAILRAGAKLVAVERDRRCL 84
Query: 177 GLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ E A+ QL+VL D ++ R+ ++ G A ++AN+P+N+ T ++
Sbjct: 85 PALAELDAAFPGQLRVLSGDAMEVDARA---------EAGEG-AHIIANLPYNVGTALLI 134
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
L P+ +S + L+ Q E A R+V +P Y + + + S+ KV
Sbjct: 135 GWLSAEWSPL-PWWSTLTLMFQMEVAERIVAKPG--GDHYGRLAVLSQWRSDARIAMKVH 191
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
R+ F P PKV +AVV + A P K + ++AF +RKMLR+SL+ L +L
Sbjct: 192 RSAFTPPPKVMSAVVHITPRPA---PEGVQLKHLERLTATAFGQRRKMLRQSLKGLPGAL 248
Query: 350 EIEKALG 356
E +A+G
Sbjct: 249 EALEAVG 255
>gi|422811067|ref|ZP_16859478.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-208]
gi|378751272|gb|EHY61863.1| dimethyladenosine transferase [Listeria monocytogenes FSL J1-208]
Length = 295
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 136/263 (51%), Gaps = 12/263 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + ++V+ D +K + + F + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVQVVHGDVLKADVEEVVAEQFAKPDLP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244
Query: 343 QHLCTSL-----EIEKALGDVGL 360
+L E+ + L +G+
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGI 267
>gi|422845053|ref|ZP_16891763.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325684673|gb|EGD26827.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 296
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 133/255 (52%), Gaps = 19/255 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 25 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALE 198
Query: 288 VPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L
Sbjct: 199 VGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLL 255
Query: 347 TSLEI-EKALGDVGL 360
E EK L D+ L
Sbjct: 256 PDKEDREKLLADLDL 270
>gi|251778936|ref|ZP_04821856.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243083251|gb|EES49141.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 283
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 12/223 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++L+ + + + A V E D ++EIGPG G+LT LL V IE D ++
Sbjct: 21 KSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLLQKAKRVTCIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ D+ +++ D +K M + K+VAN+P+ ++T +I +
Sbjct: 81 PILQQELGEYDKFELIHNDALKVDFNEIM--------KNEEHVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E A R+ EP+ + EY +++ V +Y + KV +F P
Sbjct: 133 LLKENHKFESLTIMIQKEVAERINAEPNCK--EYGALSVLVQYYCNTKIVRKVSPESFMP 190
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
+PKVD+ V+ + + V K F +V + FN +RK L
Sbjct: 191 RPKVDSIVIRLD-RLSNPRVKVQDEKLLFDIVRAGFNMRRKTL 232
>gi|300853385|ref|YP_003778369.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528]
gi|300433500|gb|ADK13267.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528]
Length = 280
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 16/232 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++++ + D + +A + + D ++EIGPG G+LT LL V AIE D ++
Sbjct: 19 KSLGQNFLIDNTVLDDIVNSADISKEDFIIEIGPGVGTLTRELLKKAGKVCAIELDSDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E +++ +D +K F + K+VAN+P+ ++T +I +
Sbjct: 79 PILKEELKDFKNFELIHKDALKID--------FNKIIDDEKNVKIVANLPYYVTTPIITR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL F + +++Q+E R+ EP+ + +Y ++I V +Y + E KV +F P
Sbjct: 131 LLNENYNFKTLTIMIQKEVGERISSEPNCK--QYGALSILVQYYCDVEVIRKVSPLSFIP 188
Query: 296 QPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
+PKV++ V+ D P V K FF +V +FN +RK L +++ L
Sbjct: 189 RPKVESIVIKL---TKLDEPRVKVKDKKLFFKVVRCSFNMRRKTLWNAVKTL 237
>gi|73663572|ref|YP_302353.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|119365849|sp|Q49V02.1|RSMA_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|72496087|dbj|BAE19408.1| dimethyladenosine transferase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 296
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 127/246 (51%), Gaps = 6/246 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +KSLGQ+++++ I + A+ + E ++E+GPG GSLT L + V+
Sbjct: 16 LNQYGFNFKKSLGQNFLIDVNIIHNIIDASDIDEQTGIIEVGPGMGSLTEQLAKSAKKVM 75
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ ++ ++++ D + V+ ED +K I +H ++ + VVAN+P+
Sbjct: 76 AFEIDQRLIPVLKDTMRPYDNVTVINEDILKADI-AHYIT---EHLTDCEKIMVVANLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ L+ V+++Q+E RL + T Y ++I +Y+E
Sbjct: 132 YITTPILLNLMQQKLPIDGYVVMMQKEVGERL-NAQVGTKAYGSLSIVAQYYTETSKVLT 190
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
VP++ F P P VD+ VV +K+ T + FF M +AF+ +RK + + Q L
Sbjct: 191 VPKSVFLPPPNVDSIVVKL-MKRPTPIVDIDDENKFFKMTKAAFSQRRKTINNNYQSLFV 249
Query: 348 SLEIEK 353
+ ++ K
Sbjct: 250 NGKVNK 255
>gi|363898890|ref|ZP_09325408.1| dimethyladenosine transferase [Oribacterium sp. ACB1]
gi|361960020|gb|EHL13279.1| dimethyladenosine transferase [Oribacterium sp. ACB1]
Length = 289
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 15/267 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ+++++S + + + + + + + D+V+EIGPG G+LT L
Sbjct: 6 DSKETIAVLQKTNFQFKKQFGQNFLIDSSVLEHILSFSEINKNDLVIEIGPGIGTLTEAL 65
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E +S D K++ D +K + LSL K S
Sbjct: 66 CERAGFVVAIEIDDKLIPILEETLSSKDNFKLIHGDALKV----NYLSLLAEHKEFSSI- 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ LL + +++Q+E ALR+ + + T +Y + + V +Y
Sbjct: 121 KVVANLPYYITTPILMDLLEKRLPLKSITVMVQKEVALRM-KAAPGTKDYGALTLAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
S P +VP F P+P V +AV+ L + T +V + F + +F +RK L
Sbjct: 180 SNPVIVQEVPPHCFIPRPNVSSAVIHLSLHEKTPV-SVQNPALLFKTIKFSFMQRRKTL- 237
Query: 340 KSLQHLCTSLEIEK-----ALGDVGLP 361
+ L + IEK LG + P
Sbjct: 238 --VNALSSGFHIEKKDLQAMLGSLSYP 262
>gi|358066478|ref|ZP_09153004.1| ribosomal RNA small subunit methyltransferase A [Clostridium
hathewayi WAL-18680]
gi|356695230|gb|EHI56863.1| ribosomal RNA small subunit methyltransferase A [Clostridium
hathewayi WAL-18680]
Length = 289
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 127/231 (54%), Gaps = 11/231 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ AA V + D+VLEIGPG G++T L V+A+E D+++
Sbjct: 22 QKKFGQNFLIDTHVLEKIIDAAGVTKEDMVLEIGPGIGTMTQYLAENARQVVAVEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + VL +D +K I + R KVVAN+P+ I+T +I
Sbjct: 82 IPILEETLKEYDNVTVLNDDILKVDIGRLAEEYNDGRP-----IKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P + +Y +++ V +Y+EP VP F
Sbjct: 137 GLFESNVPVDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYAEPYIVANVPPNCFI 194
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+P V +AV+ +L + + P V +K F ++ ++FN +RK L+ L +
Sbjct: 195 PRPNVGSAVI--RLTRHQEPPVQVKDSKLMFKLIRASFNQRRKTLQNGLNN 243
>gi|449981456|ref|ZP_21817794.1| dimethyladenosine transferase [Streptococcus mutans 5SM3]
gi|449175747|gb|EMB78135.1| dimethyladenosine transferase [Streptococcus mutans 5SM3]
Length = 291
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 133/256 (51%), Gaps = 13/256 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y + F VPRT F
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYYMTAKIAFIVPRTVFV 194
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-QHLCTSLEIEK 353
P P VD+A++ ++ V FF + +AF +RK L +L H S E++
Sbjct: 195 PAPNVDSAILKMTRREQP-LVQVQDEDFFFCVGKAAFVHRRKTLWNNLTSHFGKSEEVKV 253
Query: 354 ALGDVGLPATAAADYK 369
L A AAD K
Sbjct: 254 KLEQ----ALEAADIK 265
>gi|339300821|ref|ZP_08649950.1| dimethyladenosine transferase [Streptococcus agalactiae ATCC 13813]
gi|417006159|ref|ZP_11944729.1| dimethyladenosine transferase [Streptococcus agalactiae FSL S3-026]
gi|319745733|gb|EFV98030.1| dimethyladenosine transferase [Streptococcus agalactiae ATCC 13813]
gi|341576340|gb|EGS26751.1| dimethyladenosine transferase [Streptococcus agalactiae FSL S3-026]
Length = 290
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 133/247 (53%), Gaps = 15/247 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILADTLRDFDNVQVVNKDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ F+E V+++Q+E A R + T Y ++I V +Y + F VPRT F P
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYYMTAKVSFIVPRTVFVP 195
Query: 296 QPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSS-AFNGKRKMLRKSL-QHLC----TS 348
P VD+A++ + D P V+ + FF VS AF +RK L +L H T
Sbjct: 196 APNVDSAILKMVRR---DQPVVSVQDEDFFFRVSKVAFVHRRKTLWNNLTSHFGKSEDTK 252
Query: 349 LEIEKAL 355
++EKAL
Sbjct: 253 AKLEKAL 259
>gi|395207947|ref|ZP_10397323.1| dimethyladenosine transferase [Oribacterium sp. ACB8]
gi|394706361|gb|EJF13877.1| dimethyladenosine transferase [Oribacterium sp. ACB8]
Length = 302
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 15/267 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ+++++S + + + + + + + D+V+EIGPG G+LT L
Sbjct: 19 DSKETIAVLQKTNFQFKKQFGQNFLIDSSVLEHILSFSEINKNDLVIEIGPGIGTLTEAL 78
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E +S D K++ D +K + LSL K S
Sbjct: 79 CERAGFVVAIEIDDKLIPILEETLSSKDNFKLIHGDALKV----NYLSLLAEHKEFSSI- 133
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ LL + +++Q+E ALR+ + + T +Y + + V +Y
Sbjct: 134 KVVANLPYYITTPILMDLLEKRLPLKSITVMVQKEVALRM-KAAPGTKDYGALTLAVQYY 192
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
S P +VP F P+P V +AV+ L + T +V + F + +F +RK L
Sbjct: 193 SNPVIVQEVPPHCFIPRPNVSSAVIHLSLHEKTPV-SVQNPALLFKTIKFSFMQRRKTL- 250
Query: 340 KSLQHLCTSLEIEKA-----LGDVGLP 361
+ L + IEK LG + P
Sbjct: 251 --VNALSSGFHIEKKDLQAMLGSLSYP 275
>gi|385815093|ref|YP_005851484.1| Dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|325125130|gb|ADY84460.1| Dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 296
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 133/255 (52%), Gaps = 19/255 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 25 KKNLGQNFLVDLDAVRGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVTAYEVDQSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +
Sbjct: 141 ITTPIIFNLLEYSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALE 198
Query: 288 VPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L
Sbjct: 199 VGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLL 255
Query: 347 TSLEI-EKALGDVGL 360
E EK L D+ L
Sbjct: 256 PDKEDREKLLADLDL 270
>gi|116618707|ref|YP_819078.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|381337085|ref|YP_005174860.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Leuconostoc
mesenteroides subsp. mesenteroides J18]
gi|122271093|sp|Q03VR7.1|RSMA_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|116097554|gb|ABJ62705.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|356645051|gb|AET30894.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc mesenteroides subsp. mesenteroides J18]
Length = 295
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 7/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + AA + D V+EIGPG G+LT L + VL
Sbjct: 17 LNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQLARSAKKVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ + D +KV++ D +K + + F + K+VAN+P+
Sbjct: 77 AFEIDSQMVEVLADTLKPYDNVKVIENDVLKVDLAKVISEEF----GDNAHVKIVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL ++ T Y + + + ++++ K
Sbjct: 133 YITTPILIQLLRSNINWDNIVVMMQREVADRL-NAAVGTKSYGVLTLTIQYFAQATLAIK 191
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
VP ++F P P VD+AVV KL V + F ++ +F+ +RK L ++
Sbjct: 192 VPASSFNPSPNVDSAVV--KLTPLKPTTVVENVGKLFGVIKGSFSHRRKSLWNNM 244
>gi|450051682|ref|ZP_21840969.1| dimethyladenosine transferase [Streptococcus mutans NFSM1]
gi|449201694|gb|EMC02677.1| dimethyladenosine transferase [Streptococcus mutans NFSM1]
Length = 291
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|99080785|ref|YP_612939.1| dimethyladenosine transferase [Ruegeria sp. TM1040]
gi|118600897|sp|Q1GI39.1|RSMA_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|99037065|gb|ABF63677.1| dimethyladenosine transferase [Ruegeria sp. TM1040]
Length = 280
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 135/258 (52%), Gaps = 22/258 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQH 174
RKSLGQ+++L+ + ++A A G VLEIGPG G LT LL+ GA +LAIEKDQ
Sbjct: 22 RKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGGLTRGLLSEGARKILAIEKDQR 81
Query: 175 MVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD- 232
+ + + A+ +L+V+ D ++ +H+ +V AN+P+N+ T+
Sbjct: 82 CLPALEDIAAAYPGRLEVINGDALEIDPLAHLTPPI----------RVAANLPYNVGTEL 131
Query: 233 VIKQLLP--MGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+++ L P + + L+ Q E A R+V +P + Y + I + +E +P
Sbjct: 132 LVRWLTPKEWPPFWQSLTLMFQREVAERIVAQPG--SKAYGRLAILAQWRAEARIALSLP 189
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P PKV +AVV YPA + S +V++AFN +RKMLR SL+ + S
Sbjct: 190 PGAFTPPPKVSSAVVHLTALPEPRYPADAAILS--RVVAAAFNQRRKMLRASLKGV--SP 245
Query: 350 EIEKALGDVGLPATAAAD 367
+IE L G+P T A+
Sbjct: 246 QIEDHLNAAGIPPTERAE 263
>gi|169824244|ref|YP_001691855.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328]
gi|167831049|dbj|BAG07965.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328]
Length = 283
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 137/262 (52%), Gaps = 21/262 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KSLGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ + K++ ED +K + L E F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRENFKIINEDVLK-------VDLNELNHEDKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L DI + +++Q+E A R+V + + +Y +++FV S+ + P+T F PQ
Sbjct: 136 LFNYRDIIESITVMVQKEVANRMV-ADVGSKDYASLSLFVKQNSDAKIILNAPKTVFMPQ 194
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK--- 353
PKVD+AVV KLK+ + + ++ S F+ +RK + S +++ EK
Sbjct: 195 PKVDSAVVNMKLKKLDED---IDQELLRQLIRSGFSKRRKTILNSFTSGFVNVDKEKLKA 251
Query: 354 ALGDVGLPATAAA------DYK 369
L ++GL A DYK
Sbjct: 252 ILQELGLKENLRAENLSLEDYK 273
>gi|253700557|ref|YP_003021746.1| dimethyladenosine transferase [Geobacter sp. M21]
gi|251775407|gb|ACT17988.1| dimethyladenosine transferase [Geobacter sp. M21]
Length = 275
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 7/228 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + ++ A A D +LE+GPG G+L+ +L +GA LA+E D+ +
Sbjct: 7 KKEFGQNFLVDDSVLTRIVACVAPTADDCILEVGPGRGALSRLLAESGARFLAVEWDREL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++ FA+ +++ D ++ + + S E +K KV AN+P+NIS+ V+
Sbjct: 67 LPLLKAEFATAQNVEIGHGDILRVDLPLLLGSRVEGKK-----WKVAANLPYNISSQVLF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+ + ++F ++VL+LQ+E RL P EY + + + + + +F V +F P
Sbjct: 122 RFMEHSELFEKLVLMLQKEVGDRLTAPPA-CKEYGALTVLLRLHFDIRREFIVKPGSFRP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
PKVD+AV++F L V + F +V AF +RK L SL+
Sbjct: 181 VPKVDSAVLSF-LPLPGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLR 227
>gi|450034192|ref|ZP_21834212.1| dimethyladenosine transferase [Streptococcus mutans M21]
gi|449196615|gb|EMB97870.1| dimethyladenosine transferase [Streptococcus mutans M21]
Length = 291
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K S + + + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLCDFDNIKVVNEDILK----SDLQTCIKEFANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSKEVKVKLEQ----ALEAADIK 265
>gi|295692081|ref|YP_003600691.1| dimethyladenosine transferase [Lactobacillus crispatus ST1]
gi|295030187|emb|CBL49666.1| Dimethyladenosine transferase [Lactobacillus crispatus ST1]
Length = 294
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 136/253 (53%), Gaps = 15/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +++ D V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ ID + K+L +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PTILQNELPKKIDDQPLASRFKILLKDVLKANFKEDIGDFFDFTKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L F+ + L++Q+E A RL E + +Y P+ I V + + +V
Sbjct: 141 ITTPIIFALAESDLHFTSLTLMMQKEVAERL-EAQPGSKDYGPLTISVQTEMKVKLALQV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
R +F P+PKVD++VV L + PA+ K F +V F+ +RK L +L+ L
Sbjct: 200 GRNSFMPRPKVDSSVVV--LTPLKEKPAIEDRKHFIWVVKMCFSQRRKTLNNNLKSLLPD 257
Query: 349 -LEIEKALGDVGL 360
E +K + ++G+
Sbjct: 258 KTERDKLITELGV 270
>gi|326336599|ref|ZP_08202768.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691264|gb|EGD33234.1| dimethyladenosine transferase [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 259
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 13/236 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K LGQH++ + I Q+A + IVLEIG GTG LT LL IE D+
Sbjct: 8 PKKYLGQHFLTDLNIAQQIANTLSFDGYKIVLEIGAGTGVLTQFLLLKKTETFVIEIDKE 67
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V ++ F + ++ +DF+K I S+ S + FA ++ N P+NIS+ +I
Sbjct: 68 SVEYLQVHFPQLKN-HIIAKDFLKFDIVSYF--------SKASFA-IIGNFPYNISSQII 117
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL + E + Q+E A R+ E + + Y +++ + + EY F VP F
Sbjct: 118 FKLLEIRFFVPEFAGMFQKEVAERICEKA-GSKAYGILSVLTQAFYDTEYLFTVPENVFN 176
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
P PKV + V+ LK+ +Y + FF++V + F +RK LR SL+ + E
Sbjct: 177 PPPKVKSGVI--HLKRKENYSLPCDERLFFTIVKTTFGQRRKTLRNSLKSFLSEKE 230
>gi|217965726|ref|YP_002351404.1| dimethyladenosine transferase [Listeria monocytogenes HCC23]
gi|386006917|ref|YP_005925195.1| dimethyladenosine transferase [Listeria monocytogenes L99]
gi|386025497|ref|YP_005946273.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
(16S rRNA methylation) [Listeria monocytogenes M7]
gi|254807872|sp|B8DGN7.1|RSMA_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|217334996|gb|ACK40790.1| dimethyladenosine transferase [Listeria monocytogenes HCC23]
gi|307569727|emb|CAR82906.1| dimethyladenosine transferase [Listeria monocytogenes L99]
gi|336022078|gb|AEH91215.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
(16S rRNA methylation) [Listeria monocytogenes M7]
Length = 295
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 136/263 (51%), Gaps = 12/263 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ ++V+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYSNVQVVHGDVLKADVEEVVAEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY E
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFYMEA 185
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E F VP+T F PQP VD+AV+ K ++ V + FF + ++F +RK L +L
Sbjct: 186 ELAFIVPKTVFMPQPNVDSAVIHLK-RRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNL 244
Query: 343 QHLCTSL-----EIEKALGDVGL 360
+L E+ + L +G+
Sbjct: 245 ASKFPALKPRKDELVEGLNAIGI 267
>gi|429765068|ref|ZP_19297373.1| dimethyladenosine transferase [Clostridium celatum DSM 1785]
gi|429187013|gb|EKY27935.1| dimethyladenosine transferase [Clostridium celatum DSM 1785]
Length = 281
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 16/237 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A V E D+V+EIGPG G+LT LL V+AIE D ++
Sbjct: 21 KSLGQNFLVDDSVPRDIVLGAEVNEEDLVIEIGPGVGTLTVQLLKKAKKVVAIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + ++ D +K F K+VAN+P+ ++T +I +
Sbjct: 81 PILTQELGENPNFTLIHNDALKVD--------FNEIIGEEKSVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL G F + +++Q+E A R+ EP +Y +++ V +Y KVP T F P
Sbjct: 133 LLKDGYNFKSLTIMIQKEVAERMNAEPG--NKDYGALSLLVQYYCNTSIVRKVPPTCFIP 190
Query: 296 QPKVDAAVVTFKLKQATDYP--AVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
+PKVD+ V+ D P V + K FF ++ ++FN +RK L ++++ + E
Sbjct: 191 RPKVDSIVIRL---DKLDKPRVQVQNEKLFFDIIRNSFNMRRKTLWNGVKNIGPAKE 244
>gi|312109189|ref|YP_003987505.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1]
gi|423718306|ref|ZP_17692488.1| 16S ribosomal RNA methyltransferase, KsgA/Dim1 family [Geobacillus
thermoglucosidans TNO-09.020]
gi|311214290|gb|ADP72894.1| dimethyladenosine transferase [Geobacillus sp. Y4.1MC1]
gi|383365242|gb|EID42541.1| 16S ribosomal RNA methyltransferase, KsgA/Dim1 family [Geobacillus
thermoglucosidans TNO-09.020]
Length = 295
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 137/254 (53%), Gaps = 19/254 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ A + +EIGPG G+LT L V+A E DQ +
Sbjct: 25 KKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPGIGALTEQLARRAKKVVAFEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++++ +D +K I + F + + VVAN+P+ ++T +I
Sbjct: 85 LPILEDTLSPYENVRIIHQDVLKADIHRVIAEEF----TDAADIMVVANLPYYVTTPIIM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +P T +Y ++I + +Y+E E VPRT F
Sbjct: 141 KLLTDNLPIRGIVVMLQKEVADRISAQPG--TKDYGSLSIAIQYYTEAEKIMTVPRTVFI 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL----- 349
PQP VD+AV+ +K+ V FF +V ++F +RK + L +L ++L
Sbjct: 199 PQPNVDSAVIRL-IKRKQPPVDVDDESFFFQVVRASFAQRRKTI---LNNLISNLPNGKA 254
Query: 350 ---EIEKALGDVGL 360
+IE+ L + G+
Sbjct: 255 RKEKIERILTENGI 268
>gi|339497389|ref|ZP_08658365.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc pseudomesenteroides KCTC 3652]
Length = 303
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 7/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + AA + D V+EIGPG G+LT L + VL
Sbjct: 25 LNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQLARSAKKVL 84
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ + D +KV++ D +K + + F + K+VAN+P+
Sbjct: 85 AFEIDSQMVEVLADTLKPYDNVKVIENDVLKVDLAKVISEEF----GDNAHVKIVANLPY 140
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL ++ T Y + + + ++++ K
Sbjct: 141 YITTPILIQLLRSNINWDNIVVMMQREVADRL-NAAVGTKSYGVLTLTIQYFAQATLAIK 199
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
VP ++F P P VD+AVV KL V + F ++ +F+ +RK L ++
Sbjct: 200 VPASSFNPSPNVDSAVV--KLTPLKPTTVVENVGKLFGVIKGSFSHRRKSLWNNM 252
>gi|338994472|ref|ZP_08635188.1| dimethyladenosine transferase [Halomonas sp. TD01]
gi|338766756|gb|EGP21672.1| dimethyladenosine transferase [Halomonas sp. TD01]
Length = 276
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 21/246 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ + I ++ A +E D ++EIGPG G+LT LL A + IE D+ +
Sbjct: 11 RKRFGQNFLRDLGIISRIVRAIGPRESDRLVEIGPGQGALTAPLLEAAGKLEVIELDRDL 70
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +R +F + + + D +K F K +VV N+P+NIST +I
Sbjct: 71 IPGLRVQFFNYPDFVIHEGDALKFD--------FAALKGDGPALRVVGNLPYNISTPLIV 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL MG+ +++ +LQ+E RL EP ++++ +++ +Y + F VP F
Sbjct: 123 HLLTMGNAIADMHFMLQKEVVERLAAEPG--STDWGRLSVMAQYYCHVDQLFIVPPEAFV 180
Query: 295 PQPKVDAAVVTF----KLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
P+PKVD+A+V L Q D PA+ F +V AF +RK LR +L+ ++
Sbjct: 181 PRPKVDSAIVRLTPHESLPQTADDPAL-----LFELVKLAFGQRRKTLRNNLKGRVSAET 235
Query: 351 IEKALG 356
+E ALG
Sbjct: 236 LE-ALG 240
>gi|306817223|ref|ZP_07450970.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239]
gi|304650025|gb|EFM47303.1| dimethyladenosine transferase [Mobiluncus mulieris ATCC 35239]
Length = 303
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 31/287 (10%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K GQ+++ + ++AA A++ ++VLEIGPG GSLT LL GA V+A+E D
Sbjct: 21 PSKKRGQNFVTDPGTVRRIAAGASLSPAEVVLEIGPGLGSLTLALLETGARVIAVEIDSR 80
Query: 175 MVG----LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF---AKVVANIPF 227
+ VR ++ L +V C H+ S R + +G+ +VAN+P+
Sbjct: 81 LAAALPTTVRVHEGLVENL------YVSCADALHLDST-SRVMTDTGWPPPVALVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
N++T ++ +L + + +++Q E A RLV + S Y ++ + ++ F
Sbjct: 134 NVATPILLHILEVMPEINRAQVMVQAEVADRLVA-RVGDSAYGAPSVKLAWWGCARRAFG 192
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS---------FFSMVSSAFNGKRKML 338
V R F P P VD+ VV F+ + +P V S + F +++AF +RK L
Sbjct: 193 VSRQVFMPIPNVDSTVVEFRRESPRLFPGVESLNASEMEALRQRSFEFITAAFGMRRKTL 252
Query: 339 RKSLQHLCTSLE-----IEKALGDVGLPAT--AAADYKFPITLPSTE 378
R+SL LC S + +EKA D GL A AD+ + + STE
Sbjct: 253 RQSLARLCGSPDTAAGLLEKAGIDPGLRAENLGVADFAYLARVESTE 299
>gi|418029917|ref|ZP_12668434.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|354688380|gb|EHE88419.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 275
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 133/255 (52%), Gaps = 19/255 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 4 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 63
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 64 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 119
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +
Sbjct: 120 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALE 177
Query: 288 VPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L
Sbjct: 178 VGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLL 234
Query: 347 TSLEI-EKALGDVGL 360
E EK L D+ L
Sbjct: 235 PDKEDREKLLADLDL 249
>gi|338811316|ref|ZP_08623539.1| dimethyladenosine transferase [Acetonema longum DSM 6540]
gi|337276721|gb|EGO65135.1| dimethyladenosine transferase [Acetonema longum DSM 6540]
Length = 285
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 128/240 (53%), Gaps = 11/240 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ + + G K LGQ+++++ ++ + + AA + D VLEIGPG G+LT L
Sbjct: 12 TLHIIKTFGLGMSKKLGQNFLIDEQVVNSIVTAAHLSSADTVLEIGPGIGTLTQGLAETS 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
A ++++E D ++ ++ + ++V+ D +K I R+ ++ KVVA
Sbjct: 72 AQIVSVELDVKLIQVLAKTLEGYQNVRVVHGDILKFDI---------SREITAERYKVVA 122
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T +I LL +V ++Q+E A R+V + +Y +++ V +Y++PE
Sbjct: 123 NLPYYITTPIIMHLLESRLPIELLVTMVQKEVAERMVA-APGGKDYGALSVAVQYYTQPE 181
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
F VP +F P P V++AV+ ++ A+ K FF +V AF +RK L +L+
Sbjct: 182 ILFNVPPQSFIPSPAVESAVIRCTVRNVPPV-ALQEEKLFFRVVKGAFAQRRKTLSNALK 240
>gi|410669162|ref|YP_006921533.1| ribosomal RNA small subunit methyltransferase A [Thermacetogenium
phaeum DSM 12270]
gi|409106909|gb|AFV13034.1| ribosomal RNA small subunit methyltransferase A [Thermacetogenium
phaeum DSM 12270]
Length = 293
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 139/245 (56%), Gaps = 10/245 (4%)
Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A ++AL + G P+K LGQH++ + + +++A AA + E D+VLEIGPGTG+LT L
Sbjct: 8 AALRALLKRYGLEPKKGLGQHFLWQARLVERIADAAELTEKDLVLEIGPGTGNLTAALAR 67
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A+E D+ + L++E A ++ ++++ D R +L + +G KV
Sbjct: 68 RAGMVVAVEIDRSLFPLLKETLAGLENVRLVAGDAKSVDYR-ELLEICA--PGFTGPCKV 124
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSE 281
+ N+P+ I++ +I +LL G +V ++Q+E A R + + EY +++ V +Y+E
Sbjct: 125 LGNLPYYITSPLIMRLLGQGFRKELLVFMVQKEVADR-IAAAPGGKEYGSLSVAVQYYAE 183
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLR 339
PE F+VP FFP P V +AVV + + PAV FF +V +AF +RK ++
Sbjct: 184 PEVLFRVPPDAFFPPPDVASAVVRLRCR---SRPAVKVRDEGLFFEVVHAAFRYRRKTIK 240
Query: 340 KSLQH 344
+L+
Sbjct: 241 NALRE 245
>gi|386286965|ref|ZP_10064145.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [gamma
proteobacterium BDW918]
gi|385280004|gb|EIF43936.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [gamma
proteobacterium BDW918]
Length = 270
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 128/242 (52%), Gaps = 14/242 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ + I + A + G +LEIGPG G++T +L+ + IE D+ +
Sbjct: 10 RKRFGQNFLHDQGIIRGIVRAVSPLAGQRLLEIGPGQGAITATILDTDCQLDVIEIDRDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++F+S D ++ + D +K I + L+ E+ +VV N+P+NIST +I
Sbjct: 70 VQILTDKFSSRDNFRIHEGDALKFDIGA--LAGTEK-------LRVVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL D S++ +LQ+E RL P +T Y ++I +Y E F VP F
Sbjct: 121 HLLSAHDCISDMHFMLQKEVVERLAAGPGSKT--YGRLSIMAQYYCAIESLFDVPPEAFS 178
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PQPKV +A+V +PA K +V AFN +RK LR +L+ L +S +E A
Sbjct: 179 PQPKVQSAIVRLTPYAQPPFPA-KDVKLLQRVVRDAFNQRRKTLRNTLKGLISSEGLE-A 236
Query: 355 LG 356
LG
Sbjct: 237 LG 238
>gi|428226469|ref|YP_007110566.1| dimethyladenosine transferase [Geitlerinema sp. PCC 7407]
gi|427986370|gb|AFY67514.1| dimethyladenosine transferase [Geitlerinema sp. PCC 7407]
Length = 277
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 141/253 (55%), Gaps = 25/253 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + ++ ++ AAA + GD VLEIGPG G LT LL A +LAIE D
Sbjct: 5 PRKRFGQHWLRSEKVLQRIVAAADLSAGDRVLEIGPGQGVLTRSLLEAAEALLAIEIDTD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++ + +LQ DF++ + ++ +L+ F ++ KVVANIP+ I+ ++
Sbjct: 65 LCRALAQKLGNRPNFLLLQGDFLELNWQA-ILNDFPAFQNPR---KVVANIPYYITGPIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P F +VLL+Q+E A RL +P R + +++ V + +E E+ V
Sbjct: 121 ERLLGTIGAPNPQPFERIVLLIQKEVADRLCAKPGSRA--FGALSVRVQYLAECEWVCAV 178
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSSAFNGKRKMLRKSLQ---- 343
P FFP PKV++AVV + + +PAV + + F ++V F KRKMLR +L+
Sbjct: 179 PPHAFFPPPKVESAVVCLRPR---PFPAVVDNPRQFETLVKLGFATKRKMLRNNLKSVID 235
Query: 344 -----HLCTSLEI 351
HL LE+
Sbjct: 236 RDRLSHLLEKLEV 248
>gi|47459399|ref|YP_016261.1| dimethyladenosine transferase [Mycoplasma mobile 163K]
gi|62900531|sp|Q6KH80.1|RSMA_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|47458729|gb|AAT28050.1| dimethyladenosine transferase rRNA modification enzyme [Mycoplasma
mobile 163K]
Length = 254
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 135/245 (55%), Gaps = 18/245 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I +++ ++ D VLEIGPG G+LTN+L+ VLA E D+ +
Sbjct: 6 KKSLGQNFLQDKNIIEKIVNFIPLENED-VLEIGPGQGALTNLLVKKSKNVLAYEIDKEL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++E+ + + EDF+K I F+ +K ++ANIP+ I++D++
Sbjct: 65 IPFLKEKIKA-KNFTLKHEDFLKSEID------FQDKKI------IIANIPYFITSDILF 111
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
++ F++ ++++Q+E A +L+ + S Y +++ F++ + VPRT F+P
Sbjct: 112 KIFENHKFFTKALIMVQKEIADKLIAKA-NDSNYGKLSVSSQFFANIKKVINVPRTCFYP 170
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
QP VD+AVV F+ K + + F + + F+ +RK L +L+++ +I+ L
Sbjct: 171 QPNVDSAVVYFEFKNDIEN---IDIEKFLVFIKTCFSQQRKKLSNNLKNVYDLEKIKSVL 227
Query: 356 GDVGL 360
+ L
Sbjct: 228 KKLNL 232
>gi|422850714|ref|ZP_16897384.1| dimethyladenosine transferase [Streptococcus sanguinis SK150]
gi|325695462|gb|EGD37362.1| dimethyladenosine transferase [Streptococcus sanguinis SK150]
Length = 290
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 132/259 (50%), Gaps = 11/259 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESATEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESRIPFSEFVVMMQREVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSA-FNGKRKM 337
Y + F VPRT F P P VD+A++ K+ + P + FF VS A F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL--KMVRRNQPPVEVQNEKFFFKVSKASFVHRRKT 236
Query: 338 LRKSL-QHLCTSLEIEKAL 355
L +L H S E + L
Sbjct: 237 LWNNLTSHFGKSEETKSKL 255
>gi|428218642|ref|YP_007103107.1| ribosomal RNA small subunit methyltransferase A [Pseudanabaena sp.
PCC 7367]
gi|427990424|gb|AFY70679.1| Ribosomal RNA small subunit methyltransferase A [Pseudanabaena sp.
PCC 7367]
Length = 278
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 22/233 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +I ++ AAA + D VLEIGPGTG+LT +LL +++A+E D+
Sbjct: 4 PRKRFAQHWLNSLDILYKIVAAADLHSDDCVLEIGPGTGNLTEMLLPWVRSLIAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R +F D ++++ D ++ + L E KVVANIP+NI++ ++
Sbjct: 64 LCRQLRRKFKHKDNFELIEADLLQ-------MPLPETPN------KVVANIPYNITSPIL 110
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+L+ P+G F +VLL+Q+E RL + T Y ++I + ++ EY VP
Sbjct: 111 HRLMGKIAQPVGQ-FDRIVLLVQKEIGDRLTA-NPGTKAYNALSIRTQYLADCEYICDVP 168
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
F P PKV +AVV+ + A + K +++S F +RKML +L
Sbjct: 169 PKAFTPPPKVSSAVVSIMPRSPLQ--AAQNPKLMDTLISLGFATRRKMLHNNL 219
>gi|197118669|ref|YP_002139096.1| dimethyladenosine transferase [Geobacter bemidjiensis Bem]
gi|197088029|gb|ACH39300.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
[Geobacter bemidjiensis Bem]
Length = 275
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 127/228 (55%), Gaps = 7/228 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + ++ A A + D +LE+GPG G+L+ +L +GA LA+E D+ +
Sbjct: 7 KKEFGQNFLVDDSVLTRIVACVAPTKDDCILEVGPGRGALSRLLAESGARFLAVEWDREL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++ FA+ +++ D ++ + + S E +K KV AN+P+NIS+ V+
Sbjct: 67 LPLLKAEFATNPNVEIGHGDILRVDLPLLLGSRAEGKK-----WKVAANLPYNISSQVLF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+ + ++F ++VL+LQ+E RL P EY + + + + + +F V +F P
Sbjct: 122 RFMEHSELFEKLVLMLQKEVGDRLTAPPA-CKEYGALTVLLRLHFDIRREFIVKPGSFRP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
PKVD+AV++F L + V + F +V AF +RK L SL+
Sbjct: 181 VPKVDSAVLSF-LPLSGPRVEVGDEELFRRVVKGAFLQRRKTLLNSLR 227
>gi|146277163|ref|YP_001167322.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025]
gi|166221694|sp|A4WRK3.1|RSMA_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|145555404|gb|ABP70017.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025]
Length = 278
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 136/265 (51%), Gaps = 21/265 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TV 166
+ + G +K LGQ+++L+ + ++A A +G VLE+GPG G LT LL GA V
Sbjct: 14 IRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLKGSDVLEVGPGPGGLTRGLLAEGARRV 73
Query: 167 LAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
LAIEKD + + E A+ +L+VL D ++ + + + ++VAN+
Sbjct: 74 LAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLTPPI----------RIVANL 123
Query: 226 PFNISTDVIKQLLPMG--DIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEP 282
P+N+ T+++ + L G + + L+ Q+E A R+V P + Y + + + +EP
Sbjct: 124 PYNVGTELLTRWLSSGWPPFWESLTLMFQKEVAERIVARPG--SKAYGRLALLSQWRTEP 181
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
+ +P F P P + +AVV F YPA + S + + AFN +RKMLR SL
Sbjct: 182 KIVLTLPPEAFTPPPAIHSAVVHFTRLAGPRYPADAAVLS--RVTAMAFNQRRKMLRSSL 239
Query: 343 QHLCTSLEIEKALGDVGLPATAAAD 367
+ L +IE L D G+ T A+
Sbjct: 240 KGLAP--DIETVLRDAGIEPTQRAE 262
>gi|422344629|ref|ZP_16425554.1| dimethyladenosine transferase [Selenomonas noxia F0398]
gi|355376698|gb|EHG23940.1| dimethyladenosine transferase [Selenomonas noxia F0398]
Length = 290
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 135/255 (52%), Gaps = 20/255 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + ++ AAA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVQKIVAAAELTREDTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSSGFAKVVANIPFNISTDVIK 235
++ E D + V+ D +K I + + L ER KV AN+P+ I+T ++
Sbjct: 87 AVLAETLRGYDNVTVVPGDILKLDIPALINLGAGER-------FKVAANLPYYITTPILM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL +V ++Q+E A+R+ P + +Y +++ V +++ P+ VP F
Sbjct: 140 ALLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSVAVQYFTVPQMVTDVPPRAFM 197
Query: 295 PQPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
P P V +AV+ ++++ PAV K FF ++ +AF +RK L +L + E+
Sbjct: 198 PAPAVTSAVIACRVRE---VPAVQPADEKLFFRLIRAAFGQRRKTLLNALTGAGLTKEMS 254
Query: 353 KALGDVGLPATAAAD 367
+A GL A A+
Sbjct: 255 RA----GLSAAGIAE 265
>gi|418035193|ref|ZP_12673651.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|354690611|gb|EHE90555.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 275
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 133/255 (52%), Gaps = 19/255 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 4 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 63
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 64 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 119
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +
Sbjct: 120 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALE 177
Query: 288 VPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L
Sbjct: 178 VGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLL 234
Query: 347 TSLEI-EKALGDVGL 360
E EK L D+ L
Sbjct: 235 PDKEDREKLLADLDL 249
>gi|398814647|ref|ZP_10573327.1| dimethyladenosine transferase [Brevibacillus sp. BC25]
gi|398036356|gb|EJL29572.1| dimethyladenosine transferase [Brevibacillus sp. BC25]
Length = 297
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 140/258 (54%), Gaps = 22/258 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I + + A + + +EIGPG G+LT L A V+AIE DQ +
Sbjct: 27 KKSLGQNFLIDTNILHNIVSEADLTKEKGAIEIGPGIGALTEQLGRAAKKVMAIEIDQRL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + + ++V+ D ++ ++ L E + + VVAN+P+ ++T ++
Sbjct: 87 LPILQDTLSPYENIEVVHGDVLELDLK----KLIEEKMTGVEKLSVVANLPYYVTTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q+E A R+ +P T +Y +++ FY++ E VP + F
Sbjct: 143 KLLEERLPLENIVVMIQKEVAERIAAKPG--TKDYGSLSVAAQFYADTEVAMIVPASVFI 200
Query: 295 PQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL--- 349
P+P VD+AV+ K++ D P V FF +V S+F +RK L L +L L
Sbjct: 201 PRPNVDSAVIRLKVR---DRPPVDVDDQDVFFRVVRSSFAQRRKTL---LNNLMNGLFPK 254
Query: 350 ----EIEKALGDVGLPAT 363
E+ + L D+G+ T
Sbjct: 255 TQKDEVIQMLTDIGIDPT 272
>gi|311028973|ref|ZP_07707063.1| dimethyladenosine transferase [Bacillus sp. m3-13]
Length = 296
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 129/244 (52%), Gaps = 14/244 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L+ G +KSLGQ++++++ I + V E +EIGPG G+LT +
Sbjct: 11 TKEILDKYGFSFKKSLGQNFLIDTNILRNIVEYGEVSEKTAAIEIGPGIGALTEQIAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM---LSLFERRKSSSGFAK 220
V A E DQ ++ ++ + + D + V+ +D +K + + L +E +
Sbjct: 71 GKVFAFEIDQRLLPILEDTLSPYDNVTVIHKDILKADVTELIGEELKAYEE-------VR 123
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
V+AN+P+ ++T +I +LL G + ++LQ+E A R+ +P T EY ++I V ++
Sbjct: 124 VIANLPYYVTTPIIMKLLQEGLPLKSITVMLQKEVAERMAAKPG--TKEYGSLSIAVQYF 181
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
++ E VP+T F PQP VD+AV+ +++ V FF +V ++F +RK +
Sbjct: 182 TQAETVMIVPKTVFVPQPNVDSAVIRLVVREEPPV-RVKDEDFFFEVVRASFGQRRKTIL 240
Query: 340 KSLQ 343
+LQ
Sbjct: 241 NNLQ 244
>gi|229592954|ref|YP_002875073.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25]
gi|229364820|emb|CAY52848.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25]
Length = 270
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGMPNFNLHQGDALKFD--------FNTLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L + EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSQAEIEAA 238
>gi|336233583|ref|YP_004586199.1| ribosomal RNA small subunit methyltransferase A [Geobacillus
thermoglucosidasius C56-YS93]
gi|335360438|gb|AEH46118.1| Ribosomal RNA small subunit methyltransferase A [Geobacillus
thermoglucosidasius C56-YS93]
Length = 295
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 137/254 (53%), Gaps = 19/254 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ A + +EIGPG G+LT L V+A E DQ +
Sbjct: 25 KKSLGQNFLIDTNILRKIVDVAGLSRETGAIEIGPGIGALTEQLARRAKKVVAFEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++++ +D +K I + F + + VVAN+P+ ++T +I
Sbjct: 85 LPILEDTLSPYENVRIIHQDVLKADIHRVIAEEF----TDASDIMVVANLPYYVTTPIIM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +P T +Y ++I + +Y+E E VPRT F
Sbjct: 141 KLLTDNLPIRGIVVMLQKEVADRISAQPG--TKDYGSLSIAIQYYTEAEKIMTVPRTVFI 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL----- 349
PQP VD+AV+ +K+ V FF +V ++F +RK + L +L ++L
Sbjct: 199 PQPNVDSAVIRL-IKRKQPPVDVDDESFFFQVVRASFAQRRKTI---LNNLISNLPNGKA 254
Query: 350 ---EIEKALGDVGL 360
+IE+ L + G+
Sbjct: 255 RKEKIERILTENGI 268
>gi|358068305|ref|ZP_09154772.1| dimethyladenosine transferase [Johnsonella ignava ATCC 51276]
gi|356693564|gb|EHI55238.1| dimethyladenosine transferase [Johnsonella ignava ATCC 51276]
Length = 303
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 10/227 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQ+++++S I D + AAA ++E D VLEIGPG GSLT L + V+AIE D+ ++
Sbjct: 23 KKYGQNFLIDSNILDMIVAAADIKEDDTVLEIGPGLGSLTQRLASKAKKVVAIEIDKLLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E + + + VL ED +K I + + + +G KVVAN+P+ I+T ++ +
Sbjct: 83 PILNETLSEYNNIVVLNEDILKTDIGEII-----DKYAEAGSIKVVANLPYYITTPIVMK 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN-FFP 295
LL + +++Q+E A R+ + + +Y ++I V +Y Y V N F P
Sbjct: 138 LLEGHYPVESITVMVQKEVAERM-QAVAGSKDYGALSIAVAYYCAV-YMVGVISPNCFIP 195
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
+PKV++AV+ L + K F ++ ++FN +RK L+ L
Sbjct: 196 KPKVESAVIKLVLGEKC--LKAVDEKMLFKIIRASFNQRRKTLQNGL 240
>gi|262369199|ref|ZP_06062527.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase
[Acinetobacter johnsonii SH046]
gi|381198609|ref|ZP_09905947.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acinetobacter lwoffii WJ10621]
gi|262315267|gb|EEY96306.1| S-adenosylmethionine-6-N',N'-adenosyl dimethyltransferase
[Acinetobacter johnsonii SH046]
Length = 270
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 134/253 (52%), Gaps = 14/253 (5%)
Query: 105 IKALNSK--GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
I ALN K G RK GQ+++ + + ++ + A + GD ++EIGPG +LT+ L+
Sbjct: 4 INALNPKDEGHHTRKRFGQNFLHDQRVIAKIVRSVAPRSGDNIVEIGPGLAALTSPLIGE 63
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
+ +E D+ + + R ++L +++ D +K +LFE + +VV
Sbjct: 64 CDALTVVELDRDLAAGLPGRVPHPERLTIIETDALKY----DFTNLFEDGRP----LRVV 115
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
N+P+NIST ++ LL GD ++ +LQ+E R+ S + EY +++ + ++ +P
Sbjct: 116 GNLPYNISTPLLFHLLEFGDKVKDMHFMLQKEVVDRITA-SPNSKEYGRLSVMIQYFCKP 174
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSSAFNGKRKMLRKS 341
+ F+VP +F P PKV +AV F+L+ P V + K+ +VS F +RK LR S
Sbjct: 175 TFLFEVPPGSFNPPPKVTSAV--FRLEPYAVKPIVAKNEKALARLVSHVFTQRRKTLRNS 232
Query: 342 LQHLCTSLEIEKA 354
L+ + E+A
Sbjct: 233 LKGMLVEDGFEQA 245
>gi|399993155|ref|YP_006573395.1| dimethyladenosine transferase KsgA [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|400754730|ref|YP_006563098.1| dimethyladenosine transferase KsgA [Phaeobacter gallaeciensis 2.10]
gi|398653883|gb|AFO87853.1| dimethyladenosine transferase KsgA [Phaeobacter gallaeciensis 2.10]
gi|398657710|gb|AFO91676.1| dimethyladenosine transferase KsgA [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 281
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 139/262 (53%), Gaps = 30/262 (11%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDI----VLEIGPGTGSLTNVLLNAGA-TVLAIE 170
RKSLGQ+++L+ +N L A A Q GD+ VLEIGPG G LT LL GA VLA+E
Sbjct: 22 RKSLGQNFLLD--LN--LTAKIARQAGDLSECDVLEIGPGPGGLTRGLLAEGARRVLAVE 77
Query: 171 KDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
KD + + E A +L+V++ D ++ + +H+ ++ AN+P+N+
Sbjct: 78 KDSRCIPALAEISDAYPGRLQVIEGDALEVNPLTHLTPPI----------RIAANLPYNV 127
Query: 230 STD-VIKQLLPMG--DIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYK 285
T+ +++ L P + + L+ Q E A R+V P + Y + + + ++
Sbjct: 128 GTELLVRWLTPKAWPPFWQSLTLMFQREVAERIVAVPG--SKAYGRLALLAQWRADARIV 185
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
+P F P PKV +AVV K +A YPA T +V++AFN +RKMLR SL+ +
Sbjct: 186 LSLPPEAFSPPPKVHSAVVHLKALEAPRYPADAGT--LNKVVAAAFNQRRKMLRASLKSV 243
Query: 346 CTSLEIEKALGDVGLPATAAAD 367
S +IE L VG+P T A+
Sbjct: 244 --SPDIEDHLNAVGIPPTERAE 263
>gi|325955928|ref|YP_004286538.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus acidophilus 30SC]
gi|385816825|ref|YP_005853215.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Lactobacillus
amylovorus GRL1118]
gi|325332493|gb|ADZ06401.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus acidophilus 30SC]
gi|327182763|gb|AEA31210.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus amylovorus GRL1118]
Length = 294
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 128/247 (51%), Gaps = 14/247 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + +A +Q GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQAAILGIVESADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERF------ASIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ A +D+ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAVFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L F+ + L++Q+E A RL E EY P+ I V + +V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGNKEYGPLTISVQTEMNVKLALEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
++F P+PKVD+AVV L + PA+ K F +V F+ +RK L +L+ L
Sbjct: 200 KSSSFMPRPKVDSAVVV--LTPLAEKPAINDRKHFIWVVKMCFSQRRKTLNNNLKTLIPD 257
Query: 349 LEIEKAL 355
+ AL
Sbjct: 258 NDQRAAL 264
>gi|331006688|ref|ZP_08329965.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989]
gi|330419496|gb|EGG93885.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989]
Length = 274
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 134/248 (54%), Gaps = 14/248 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ + I +++ + + D ++EIGPG G++T L+ A + IE D+ +
Sbjct: 12 RKRFGQNFLTDQNIINRIVTSINAKPSDRLVEIGPGQGAITQQLIQACPQLQVIELDRDL 71
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ +FA + + Q+D ++ + M+ E++ ++V N+P+NIST +I
Sbjct: 72 IPILLAQFAKYPEFAIHQQDALRFDFATLMV---EKQP-----LRIVGNLPYNISTPLIF 123
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL D ++ +LQ+E RLV + Y ++I V +Y E E+ F VP F P
Sbjct: 124 HLLSYQDRIQDMHFMLQKEVVNRLVA-TAGEKNYGRLSIMVQYYCETEHLFAVPPECFDP 182
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLC--TSLEIE 352
QPKVD+A+V +L+ P V + + S +V+ AF +RK LR +L+ L +L+I
Sbjct: 183 QPKVDSAIV--RLQPHKKLPYVANNVAHLSHLVNLAFQQRRKTLRNTLKQLADGDALQIA 240
Query: 353 KALGDVGL 360
D+ L
Sbjct: 241 AEKLDLNL 248
>gi|290581127|ref|YP_003485519.1| dimethyladenosine transferase [Streptococcus mutans NN2025]
gi|449969654|ref|ZP_21813346.1| dimethyladenosine transferase [Streptococcus mutans 2VS1]
gi|450057323|ref|ZP_21842516.1| dimethyladenosine transferase [Streptococcus mutans NLML4]
gi|450066530|ref|ZP_21846013.1| dimethyladenosine transferase [Streptococcus mutans NLML9]
gi|450092911|ref|ZP_21856324.1| dimethyladenosine transferase [Streptococcus mutans W6]
gi|450150084|ref|ZP_21876433.1| dimethyladenosine transferase [Streptococcus mutans 14D]
gi|450164985|ref|ZP_21881628.1| dimethyladenosine transferase [Streptococcus mutans B]
gi|254998026|dbj|BAH88627.1| dimethyladenosine transferase [Streptococcus mutans NN2025]
gi|449173988|gb|EMB76510.1| dimethyladenosine transferase [Streptococcus mutans 2VS1]
gi|449205395|gb|EMC06143.1| dimethyladenosine transferase [Streptococcus mutans NLML4]
gi|449208821|gb|EMC09384.1| dimethyladenosine transferase [Streptococcus mutans NLML9]
gi|449217702|gb|EMC17737.1| dimethyladenosine transferase [Streptococcus mutans W6]
gi|449233937|gb|EMC32977.1| dimethyladenosine transferase [Streptococcus mutans 14D]
gi|449241100|gb|EMC39745.1| dimethyladenosine transferase [Streptococcus mutans B]
Length = 291
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVSILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSKEVKVKLEQ----ALEAADIK 265
>gi|260576766|ref|ZP_05844751.1| dimethyladenosine transferase [Rhodobacter sp. SW2]
gi|259021018|gb|EEW24329.1| dimethyladenosine transferase [Rhodobacter sp. SW2]
Length = 280
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 139/259 (53%), Gaps = 24/259 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQH 174
+K LGQ+++L+ + ++A AA G VLE+GPG G LT LL GA VLA+EKD
Sbjct: 22 KKQLGQNFLLDLNLTARIARAAGDLSGCDVLEVGPGPGGLTRGLLAEGARRVLAVEKDAR 81
Query: 175 MVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD- 232
+ + E A+ +L+V+Q D + + +H++ K+VAN+P+N+ T+
Sbjct: 82 CLPALAEIAAAYPGRLEVMQGDALALDVAAHLVPPI----------KIVANLPYNVGTEL 131
Query: 233 VIKQLLP--MGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+I+ L P + + L+ Q+E A R+V +P + Y + + + ++P+ +P
Sbjct: 132 LIRWLTPAHWPPFWDSLTLMFQKEVAERIVAKPGPKA--YGRLALLSQWRADPKIVLTLP 189
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSS-AFNGKRKMLRKSLQHLCTS 348
F P PKV +AVV F+ D P + ++ V++ AFN +RKMLR SL+ L
Sbjct: 190 PEAFTPAPKVHSAVVHFR---RLDAPRFAADEAVLGRVTAMAFNQRRKMLRSSLKALAPD 246
Query: 349 LEIEKALGDVGLPATAAAD 367
+E+ L G+ TA A+
Sbjct: 247 IEVR--LRAAGIEPTARAE 263
>gi|260752282|ref|YP_003225175.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258551645|gb|ACV74591.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 278
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 21/242 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++L+S++ D++A V E+GPG G LT LL AGA V A+E+D+ +
Sbjct: 22 KRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKAGAKVTAVERDRRCL 81
Query: 177 GLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ E A DQL+V+ D ++ + +VAN+P+N+ T ++
Sbjct: 82 PALAELSAHFPDQLQVISGDAME----------IDEAAVLGEHVHIVANLPYNVGTALLI 131
Query: 236 QLL---PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+ L +S + L+ Q+E A R+ + T Y +++ + SE + F V R+
Sbjct: 132 RWLTAKTWQPWWSSLTLMFQKEVAERITA-KVGTPHYGRLSVLAQWRSEAKLSFPVHRSA 190
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL---QHLCTSL 349
F P PKV +AVV K D P S + + ++AFN +RKMLR+SL +H+ +L
Sbjct: 191 FVPPPKVMSAVVHLTPK---DQPEGVSLGTLEKITAAAFNQRRKMLRQSLKNIEHMMEAL 247
Query: 350 EI 351
E+
Sbjct: 248 EL 249
>gi|355678189|ref|ZP_09060868.1| ribosomal RNA small subunit methyltransferase A [Clostridium
citroniae WAL-17108]
gi|354812635|gb|EHE97250.1| ribosomal RNA small subunit methyltransferase A [Clostridium
citroniae WAL-17108]
Length = 288
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 11/231 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +AA + E D VLEIGPG G++T L V+A+E D ++
Sbjct: 22 QKRFGQNFLIDTHVLDKIISAAGITEQDCVLEIGPGIGTMTQYLAEHARRVVAVEIDSNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + V+ +D +K + + E R KVVAN+P+ I+T +I
Sbjct: 82 LPILDETLKGYTNITVINDDILKVDVGGLVNEYNEGRP-----VKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++Q+E A R+ V P + +Y +++ V +Y+EP VP F
Sbjct: 137 GLFESDVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYAEPYIVANVPPNCFI 194
Query: 295 PQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+P V +AV+ +L + + P V K F +V ++FN +RK L+ L +
Sbjct: 195 PRPNVGSAVI--RLTRYKEPPVQVDDPKFMFKLVRASFNQRRKTLQNGLNN 243
>gi|333895959|ref|YP_004469833.1| ribosomal RNA small subunit methyltransferase A
[Thermoanaerobacterium xylanolyticum LX-11]
gi|333111224|gb|AEF16161.1| Ribosomal RNA small subunit methyltransferase A
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 273
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 130/241 (53%), Gaps = 14/241 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+ KG +K LGQ+++ + I ++ + + + D V+EIG G G+LT +L V+
Sbjct: 2 MKVKGFNTKKRLGQNFIFDEGILSKIVDLSGITKNDNVIEIGAGLGTLTRKILEKANMVV 61
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
+ E D+ +++ F D L VL +D +K +R + + F K KVVAN+P+
Sbjct: 62 SYEIDKEAYEILKADFKGRDNLIVLNDDIMKVDLRETVDAYFGGEK-----CKVVANLPY 116
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I++ +I +LL + ++ +++Q+E A R+ +P +Y + + VN+YS+PE
Sbjct: 117 YITSPIIMKLLE-SRLMKDITIMVQKEVAERICAKPG--GKDYGVLTVAVNYYSKPEILL 173
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPA--VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
+P F P+PKV ++++ D P+ V K FF +V S+F +RK++ SL+
Sbjct: 174 NLPPEVFSPKPKVSSSLIKL---HVLDKPSVFVKDEKLFFRIVKSSFGQRRKVITNSLKS 230
Query: 345 L 345
L
Sbjct: 231 L 231
>gi|403047718|ref|ZP_10903176.1| dimethyladenosine transferase [Staphylococcus sp. OJ82]
gi|402762459|gb|EJX16563.1| dimethyladenosine transferase [Staphylococcus sp. OJ82]
Length = 296
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 6/238 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +KSLGQ+++++ I ++ A+ + E ++EIGPG GSLT L V+
Sbjct: 16 LNQYGFNFKKSLGQNFLIDVNIIQKIIDASDIGENTGIIEIGPGMGSLTEQLAKNAKKVV 75
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ ++ ++++ D ++++ +D +K I +H ++ + VVAN+P+
Sbjct: 76 AFEIDQRLIPVLKDTMGPYDNVEIINKDILKADI-AHYVT---EHLADCDNIMVVANLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ L+ V+++Q+E RL + T Y ++I +Y+E
Sbjct: 132 YITTPILLNLMQQTLPIDGYVVMMQKEVGERL-NAQVGTKAYGSLSIVTQYYTETSKVLT 190
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
VP+T F P P VD+ VV +K+ T + + FF M +AF+ +RK + + Q L
Sbjct: 191 VPKTVFLPPPNVDSIVVKL-MKRQTPEVDIDNEDKFFKMTKAAFSQRRKTISNNYQSL 247
>gi|170743207|ref|YP_001771862.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
gi|168197481|gb|ACA19428.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
Length = 285
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 130/259 (50%), Gaps = 19/259 (7%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKD 172
PRK+LGQ+++ + + ++A AA G V+E+GPG G LT LL GA V+AIE+D
Sbjct: 24 MPRKALGQNFLFDLNLTGRIARAAGPLAGVTVVEVGPGPGGLTRALLAEGAARVVAIERD 83
Query: 173 QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
+ + + E A +L V+Q D L+ R +G A++VAN+P+N+ T
Sbjct: 84 ERALPALAEIAAHYPGRLTVVQAD---------ALAFDPRPLVGAGPARIVANLPYNVGT 134
Query: 232 DVIKQLL---PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++ L F + L+ Q E A R+V + Y + + + ++ F V
Sbjct: 135 ALLTGWLAAEAWPPWFDSLTLMFQREVAERIVADERDRANYGRLGVLCGWRTQARILFDV 194
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P + F P PKV ++VV + A P ++ ++ +AF +RKMLR+SL+ +
Sbjct: 195 PPSAFVPPPKVTSSVVRLVPRAA---PLPCRVRALEAVTGAAFGQRRKMLRQSLR--AAT 249
Query: 349 LEIEKALGDVGLPATAAAD 367
+ L G+P TA A+
Sbjct: 250 PDPGPLLAAAGIPETARAE 268
>gi|227894433|ref|ZP_04012238.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047]
gi|227863803|gb|EEJ71224.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047]
Length = 294
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 123/238 (51%), Gaps = 14/238 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQNAILGIVEAANIQSGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ ID + K+ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILHNELPKKIDGEPLEARFKLTLKDVLKANFEKDLTGFFDMGKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L F+ + L++Q+E A RL E EY P+ I V +V
Sbjct: 141 ITTPIIFVLAESDLHFTSLTLMMQKEVAERL-EAKPGNKEYGPLTISVQTEMNVRLALEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
T+F P+P+VD++VV L D PA+ + K F +V F+ +RK L +L+ L
Sbjct: 200 KNTSFMPRPRVDSSVVV--LTPLKDKPAIENRKHFIWVVKMCFSQRRKTLNNNLKTLI 255
>gi|407006285|gb|EKE22227.1| dimethyladenosine transferase, partial [uncultured bacterium]
Length = 237
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 135/250 (54%), Gaps = 17/250 (6%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
PR LGQH++ N I Q+ ++ +++ + +LEIGPG G LT L V+A+E D
Sbjct: 1 MPR-YLGQHFLNNPAIVTQIVDSSQIKKDETILEIGPGEGILTERLCQKARRVIAVELDT 59
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ ++ ++F+ + ++ ED +K ++ L +K K++ANIP+ I++ +
Sbjct: 60 KLKTILEKKFSQQKNIDLIFEDILKI----NLPQLLNEKKIDK--YKIIANIPYYITSKI 113
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
I+ L E++L++Q+E A R+V P + S ++ V +YS+ E F V + NF
Sbjct: 114 IRLFLETARQPDELILMVQKEVAQRIVAPKGKMS---ILSTSVQYYSQAEILFDVTKDNF 170
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ---HLCTSLE 350
P PKVD++V+ + +D A+T + FF +V + F +RK L +L HL E
Sbjct: 171 DPPPKVDSSVIKISNIKKSD--ALTD-RQFFKVVRAGFCARRKTLINNLSNSFHLDKK-E 226
Query: 351 IEKALGDVGL 360
IEK + + L
Sbjct: 227 IEKIILQINL 236
>gi|444921566|ref|ZP_21241401.1| Ribosomal RNA small subunit methyltransferase A [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507293|gb|ELV07470.1| Ribosomal RNA small subunit methyltransferase A [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 269
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 132/255 (51%), Gaps = 16/255 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++++ + QL + + D ++EIGPG G+LT LL + IE D+++
Sbjct: 15 RKRFGQNFLIDYPLIIQLFQSIRAEPNDHLIEIGPGLGALTRPLLTVLNELTVIELDRNL 74
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E +DQL ++ +D + R+ L ER+ ++V N+P+NIST +I
Sbjct: 75 IPILSE----LDQLNIIHQDVLTVDFRT--LKTDERK------LRIVGNLPYNISTPIIF 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + D+ ++ +LQ+E R+ + SEY +++ V Y + +P T F P
Sbjct: 123 HLLAVADVIQDMHFMLQKEVIDRMAA-TPDDSEYGRLSVMVQRYCQVIPLLTIPPTAFNP 181
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
PKV + V + Y + S + F+ +V AF KRK LR +L+ L T EIE
Sbjct: 182 APKVMSQFVRLVPYEKDPY-GIESDECFYDVVKCAFTMKRKTLRNTLKPLFTQEEIEACG 240
Query: 356 GDVGLPAT--AAADY 368
D L A + AD+
Sbjct: 241 IDASLRAEKLSVADF 255
>gi|390166589|ref|ZP_10218848.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingobium indicum B90A]
gi|389590493|gb|EIM68482.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingobium indicum B90A]
Length = 280
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 23/247 (9%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++L+ ++ D++AA EG E+GPG G LT +L GA ++A+E+D+ +
Sbjct: 25 KALGQNFLLDEQLLDRIAAIPGPLEGQPAFEVGPGPGGLTRAILRGGAKLVAVERDRRCL 84
Query: 177 GLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ E A+ QL+VL D ++ R+ ++ G A V+AN+P+N+ T ++
Sbjct: 85 PALAELDAAFPGQLRVLSGDAMEVDARA---------EAGEG-AHVIANLPYNVGTALLI 134
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
L P+ +S + L+ Q E A R+V +P Y + + + S+ KV
Sbjct: 135 GWLSAEWSPL-PWWSTLTLMFQMEVAERIVAKPG--GDHYGRLAVLSQWRSDARIAMKVH 191
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
R+ F P PKV +AVV + A P K + ++AF +RKMLR+SL+ L +L
Sbjct: 192 RSAFTPPPKVMSAVVHITPRPA---PEGVQLKHLERLTAAAFGQRRKMLRQSLKGLPGAL 248
Query: 350 EIEKALG 356
E +A+G
Sbjct: 249 EALEAVG 255
>gi|296111672|ref|YP_003622054.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154]
gi|339491061|ref|YP_004705566.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc sp. C2]
gi|295833204|gb|ADG41085.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154]
gi|338852733|gb|AEJ30943.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc sp. C2]
Length = 295
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 127/253 (50%), Gaps = 12/253 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN+ G +K GQ+++ + + + A + + D V+EIGPG G+LT L A V+
Sbjct: 17 LNTYGLHAKKKFGQNFLTDLTVLHGIVDIAGITDQDYVIEIGPGIGALTEQLARAAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ E D +KV+ D + ++ + + F KVVAN+P+
Sbjct: 77 AFEIDTQMVDVLSETLQPYDNVKVINGDILDINLPEVIRAEF----GEEAHVKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL + T Y + + + ++++ E +
Sbjct: 133 YITTPILMQLLRTNIAWDNIVVMMQREVAERL-NAEVGTKAYGVLTLIIQYFAQAELAIE 191
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK-----MLRKSL 342
V +F P P VD+AVV KL + V + F ++ +F+ +RK ML+
Sbjct: 192 VSAASFNPAPNVDSAVV--KLTPLSPELVVAQPERLFGVIKGSFSHRRKSLWNNMLQTYG 249
Query: 343 QHLCTSLEIEKAL 355
+ T +I KAL
Sbjct: 250 KEAVTKEKITKAL 262
>gi|227432115|ref|ZP_03914127.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227352142|gb|EEJ42356.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 303
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 7/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + AA + D V+EIGPG G+LT L + VL
Sbjct: 25 LNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQLARSAKKVL 84
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ + D +KV++ D +K + + F + K+VAN+P+
Sbjct: 85 AFEIDSQMVEVLADTLKPYDNVKVIENDVLKVDLAKIISEEF----GDNAHVKIVANLPY 140
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL ++ T Y + + + ++++ K
Sbjct: 141 YITTPILIQLLRSNINWDNIVVMMQREVADRL-NAAVGTKSYGVLTLTIQYFAQATLAIK 199
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
VP ++F P P VD+AVV KL V + F ++ +F+ +RK L ++
Sbjct: 200 VPASSFNPSPNVDSAVV--KLTPLKPTTIVENVGKLFGVIKGSFSHRRKSLWNNM 252
>gi|212696052|ref|ZP_03304180.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM
7454]
gi|212676961|gb|EEB36568.1| hypothetical protein ANHYDRO_00588 [Anaerococcus hydrogenalis DSM
7454]
Length = 255
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 134/239 (56%), Gaps = 10/239 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ D++ + V G+ +LEIGPG G+++ + ++ IE D+ ++
Sbjct: 23 KSLGQNFLVDKNFVDKIIDLSEVS-GENILEIGPGIGTISQEMAKTCKKLVVIEIDKTLI 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ + ++ D +K ++ + F S F KVV+N+P+ I+T +I++
Sbjct: 82 PILKDNLGEFSNVDIINADILKTDLKKIIKENF----SGEDF-KVVSNLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L ++ +++Q+E A R+ + ++ +Y +++F+ +Y+E +FKVP++ F PQ
Sbjct: 137 LFEEDLPCKDMTIMVQKEVADRM-KADEKSKDYSSLSVFIKYYAEITGQFKVPKSVFMPQ 195
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
PK+D+ V+ L+ Y + FS+V + FN +RK + SL + +++K L
Sbjct: 196 PKIDSQVLKLNLRL---YDEKVNRNILFSIVRAGFNKRRKTILNSLSSVIEKEDLKKYL 251
>gi|417925844|ref|ZP_12569259.1| dimethyladenosine transferase [Finegoldia magna
SY403409CC001050417]
gi|341590769|gb|EGS34000.1| dimethyladenosine transferase [Finegoldia magna
SY403409CC001050417]
Length = 283
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 136/262 (51%), Gaps = 21/262 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KALGQNFLIDGNLIENIIDYSNITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ D +++ ED +K L E F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRDNFQIINEDVLKV-------DLNELNHEDKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L DI + +++Q+E A R+V + + +Y +++FV S+ + P+T F PQ
Sbjct: 136 LFNYRDIIESITVMVQKEVANRMV-ADVGSKDYASLSLFVKQNSDAKIILNAPKTVFMPQ 194
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK--- 353
PKVD+AVV KLK+ + + ++ S F+ +RK + S +++ EK
Sbjct: 195 PKVDSAVVNMKLKKLDED---IDQELLRQLIRSGFSKRRKTILNSFTSGFVNVDKEKLKS 251
Query: 354 ALGDVGLPATAAA------DYK 369
L ++GL A DYK
Sbjct: 252 ILQELGLKENLRAENLSLEDYK 273
>gi|450109762|ref|ZP_21861669.1| dimethyladenosine transferase [Streptococcus mutans SM6]
gi|449225856|gb|EMC25429.1| dimethyladenosine transferase [Streptococcus mutans SM6]
Length = 291
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +K++ ED +K S + + + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLGDFDNVKIVNEDILK----SDLQTCIKEFANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +PS T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSKEVKVKLEQ----ALEAADIK 265
>gi|450045200|ref|ZP_21838322.1| dimethyladenosine transferase [Streptococcus mutans N34]
gi|449200680|gb|EMC01702.1| dimethyladenosine transferase [Streptococcus mutans N34]
Length = 291
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVSKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADLK 265
>gi|424942983|ref|ZP_18358746.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
NCMG1179]
gi|346059429|dbj|GAA19312.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
NCMG1179]
Length = 268
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A +EG +LEIGPG G+LT LL +GA + IE DQ +
Sbjct: 10 RKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGARLDVIELDQDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++ +F + + Q D +K + SL E S +VV N+P+NIST +I
Sbjct: 70 IPLLKLKFGLESRFSLHQGDALKF----DLASLVE----SGEKLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E RL + ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLEHAPVIEDMHFMLQKEVVERLAA-TPGGGDWGRLSIMVQYHCRVEHLFNVGSGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L + +IE A
Sbjct: 181 PPKVDSAIVRLTPFTEPPHPA-RDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAA 238
>gi|450062282|ref|ZP_21844224.1| dimethyladenosine transferase [Streptococcus mutans NLML5]
gi|449206025|gb|EMC06744.1| dimethyladenosine transferase [Streptococcus mutans NLML5]
Length = 291
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVSKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLISHFGKSEEVKVKLEQ----ALEAADLK 265
>gi|390631024|ref|ZP_10258994.1| Ribosomal RNA small subunit methyltransferase A [Weissella confusa
LBAE C39-2]
gi|390483772|emb|CCF31342.1| Ribosomal RNA small subunit methyltransferase A [Weissella confusa
LBAE C39-2]
Length = 298
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 11/238 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + AA V++ D V+EIGPG G+LT L A V+
Sbjct: 17 MNQFGINTKKSLGQNFLTDINILKNIVAAGDVKDTDNVVEIGPGIGALTEQLARAAKQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ A D + ++ D +K + F ++ K+VAN+P+
Sbjct: 77 AFEIDDRLIPVLDHTMAPYDNVTIVHNDILKVDLEKEFAKQF---ADTTAPLKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
I+T ++ Q+L G F +V+++Q+E A RL EP T +Y + + V + + F
Sbjct: 134 YITTPILMQVLQSGIHFDNIVVMMQKEVADRLSAEPG--TKDYGSLTLAVQYRMNAKLAF 191
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSL 342
V RT F P P VD+A+++ ++ AV K F + F +RK L +L
Sbjct: 192 TVSRTAFVPNPNVDSAIISLTPREPL---AVQPRDEKQLFELFKIGFVMRRKTLWNNL 246
>gi|398901159|ref|ZP_10650110.1| dimethyladenosine transferase [Pseudomonas sp. GM50]
gi|398180278|gb|EJM67864.1| dimethyladenosine transferase [Pseudomonas sp. GM50]
Length = 272
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTKGLLDSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFHLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNASLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA K +V AFN +RK LR +L+ L + EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKLLLNNAEIEAA 238
>gi|336055350|ref|YP_004563637.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
kefiranofaciens ZW3]
gi|333958727|gb|AEG41535.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
kefiranofaciens ZW3]
Length = 294
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 128/247 (51%), Gaps = 14/247 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q D V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQAAILGIVQAADIQPNDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERF-ASID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ ID + K+L +D +K + + + F+ +K KVVAN+P+
Sbjct: 85 PEILQNELPPKIDNQPLSQRFKLLLKDVLKANFKEDLAGFFDLKKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L F+ + L++Q+E A RL E S EY P+ I V + +V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EASPGNKEYGPLTISVQTEMKVNLALQV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
+F P+PKVD++VV L D P + + + F +V F +RK L +L+ L
Sbjct: 200 SHNSFMPRPKVDSSVVV--LTPLKDKPVIGNRQHFVWVVKMCFAQRRKTLNNNLKALVPD 257
Query: 349 LEIEKAL 355
+AL
Sbjct: 258 NTTREAL 264
>gi|334141530|ref|YP_004534736.1| dimethyladenosine transferase [Novosphingobium sp. PP1Y]
gi|333939560|emb|CCA92918.1| dimethyladenosine transferase [Novosphingobium sp. PP1Y]
Length = 273
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 18/244 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH-M 175
K+LGQ+++ + ++ D++AA EG VLE+GPG G LT LL AGA V AIE D+ +
Sbjct: 20 KALGQNFLFDEQLLDRIAAIPGALEGHNVLEVGPGPGGLTRALLRAGAQVTAIEMDRRCL 79
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L A +LKV++ D +K SLF+ G +VAN+P+N+ T +
Sbjct: 80 PALAEVEQAFPGKLKVIEGDAMKI----APASLFD------GPYHIVANLPYNVGTALFT 129
Query: 236 QLLPMGDI---FSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
L + + + L+ QEE A R+V + TS Y + + + S+ + KV R+
Sbjct: 130 GWLSGEEWPPQWQSLTLMFQEEVARRIVAEA-NTSAYGRLAVLAQWRSKAKLAMKVHRSA 188
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F P PKV +A+V A P S + + +AF +RKMLR+SL+ L +L
Sbjct: 189 FTPPPKVMSAIVHVTPGTA---PEGVSMRVLERVTEAAFGQRRKMLRQSLKGLPGALAAL 245
Query: 353 KALG 356
LG
Sbjct: 246 DRLG 249
>gi|433448289|ref|ZP_20411262.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella ceti NC36]
gi|429539920|gb|ELA07953.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella ceti NC36]
Length = 298
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 5/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + AA V E D V+EIGPG G+LT L VL
Sbjct: 17 MNEFGINTKKSLGQNFLTDINILTNIVAAGDVTENDNVIEIGPGIGALTEQLARNAKQVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ A D + V+ ED ++ ++ + ER S K+VAN+P+
Sbjct: 77 AFEIDDRLIPVLAHTLAPYDNVTVVHEDILQVNLAKEIQ---ERFDDPSAPLKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ Q+L G F +V+++Q+E A R + + T +Y + + + + + F
Sbjct: 134 YITTPILMQVLQSGVQFDSIVVMMQKEVADR-ISAAPGTKDYGALTLAIEYRMNAKLAFT 192
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
V R F P P VD+A++ ++ TK FS+ F +RK L +L
Sbjct: 193 VSRKAFVPNPNVDSAIIALTPREPLAVLPKDETK-MFSLFKIGFAMRRKTLWNNL 246
>gi|365960940|ref|YP_004942507.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Flavobacterium columnare ATCC 49512]
gi|365737621|gb|AEW86714.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Flavobacterium columnare ATCC 49512]
Length = 259
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 13/233 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQH++ + I ++A A +Q D VLEIGPG G LT LL IE D
Sbjct: 7 KKHLGQHFLNDENIAGKIADALTLQGYDKVLEIGPGMGVLTKYLLEKPIDTYVIEIDTES 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + + K+L EDF +R + +F + FA ++ N P+NIS+ ++
Sbjct: 67 VEYLKTHYLKLSN-KILSEDF----LRFDLSKVF----GNEPFA-IIGNFPYNISSQIVF 116
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
++L M D E + Q+E A R+ E + Y +++ + E EY F V F P
Sbjct: 117 KVLEMRDQIPEFAGMFQKEVAERICEKK-GSKTYGILSVLTQAFYETEYLFTVSEFVFTP 175
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
PKV + V+ + K+ P + K FF++V +AFN +RK LR SL+ S
Sbjct: 176 PPKVKSGVMRMRRKENAQLPC--NEKLFFNVVKTAFNQRRKTLRNSLKSFNLS 226
>gi|320103121|ref|YP_004178712.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644]
gi|319750403|gb|ADV62163.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644]
Length = 325
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 138/267 (51%), Gaps = 12/267 (4%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+G PRK GQ+++++ ++D + AA V D+VLE+GPG G+LT + + GA V+A+E
Sbjct: 16 EGIAPRKRYGQNFLIDLNLHDVIVAAGEVGPNDVVLEVGPGAGALTRRMADLGAAVIAVE 75
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFV--KCHIRSHMLSLFERRKSSSGFA---KVVANI 225
D M L R ++VLQ D + K I +L + A K+VAN+
Sbjct: 76 IDPAMARLTRNAVEGRPNVRVLQRDALANKNRIAPEVLDAVRAGLAVDPVARRFKLVANL 135
Query: 226 PFNISTDVIKQLLPMGDIFSEVV-LLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
P+N++T ++ LL + E++ + +Q E A R+V + TS Y +++ N + E
Sbjct: 136 PYNVATPILTNLLVAEEPRVELMAVTIQWEVAERIVA-TPGTSAYGALSVLTNALASAEI 194
Query: 285 KFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL-- 342
K+P + F+P+P VD+A++ + A + F S++ FN +RK +R+ L
Sbjct: 195 VRKLPPSVFWPRPLVDSAIMVIRPDPAR-RTRLGDVVWFQSVIRRVFNHRRKNIRRVLHG 253
Query: 343 --QHLCTSLEIEKALGDVGLPATAAAD 367
+ + T +IE L L A A+
Sbjct: 254 YYRDMLTKSDIEDLLSQAELAPDARAE 280
>gi|147794654|emb|CAN73506.1| hypothetical protein VITISV_007907 [Vitis vinifera]
Length = 383
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
K F KS GQH + N + D + + ++ D VLEIGPGTG+LT LL A V+A+
Sbjct: 44 KXMFLYKSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVX 103
Query: 171 KDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
D MV ++R+R A DQL V+ +D +K F VVANIP+
Sbjct: 104 LDARMVEILRKRVAEHGLEDQLTVICKDALKTDF--------------PQFDLVVANIPY 149
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKF 286
IS+ ++ +L+ + F LLLQ+E A RL+ P SE+ + + V +E E+
Sbjct: 150 GISSPLVAKLVFGANPFRSATLLLQKEFARRLLANPG--DSEFNRLAVNVKLVAEVEFVM 207
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V + +F P PKVD++VVT + K + P V + + + F+ K K L + +H
Sbjct: 208 DVSKRDFLPCPKVDSSVVTIRPK--AEIPDV-DLNEWCAFTRTCFSKKNKTLGATFKHKR 264
Query: 347 TSLEIEK 353
+E+ +
Sbjct: 265 RVMELWR 271
>gi|319784428|ref|YP_004143904.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170316|gb|ADV13854.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 279
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQH 174
+K+LGQ+++L+ + ++A A V+E+GPG G LT LL GA V+AIE+D+
Sbjct: 21 KKALGQNFLLDLNLTGKIARTAGDLSDATVIEVGPGPGGLTRALLANGARQVIAIERDER 80
Query: 175 MVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ + E +L+V+ D +K + L R + G K+VAN+P+NI T++
Sbjct: 81 CLAALAEVSGHYPGRLEVVSGDALK----TDFTGLAGRATGNGGPVKIVANLPYNIGTEL 136
Query: 234 IKQLLPMGD---IFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
+ + L + D ++ + L+ Q E A R+V P+ + Y + + + +E F VP
Sbjct: 137 LVRWLTVSDWPPFYTSMTLMFQREVAERIVAPA-GSDSYGRLGVLAGWRTEARIAFDVPP 195
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
F P PKV ++VV + P T K + +AF +RKMLR+S++ L
Sbjct: 196 QAFTPPPKVTSSVVHLVPRP---MPLPTEVKKLGRVTEAAFGQRRKMLRQSVKSLGGEAL 252
Query: 351 IEKA 354
+++A
Sbjct: 253 LDRA 256
>gi|302380914|ref|ZP_07269376.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3]
gi|302311292|gb|EFK93311.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3]
Length = 283
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 137/262 (52%), Gaps = 21/262 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ + K++ ED +K ++ E F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRENFKIINEDVLKVNLN-------ELNHEDKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L DI + +++Q+E A R+V + + +Y +++FV S+ + P+T F PQ
Sbjct: 136 LFNYRDIIESITVMVQKEVANRMV-ADVGSKDYASLSLFVKQNSDAKIILNAPKTVFMPQ 194
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK--- 353
PKVD+AVV KLK+ + + ++ S F+ +RK + S +++ EK
Sbjct: 195 PKVDSAVVNMKLKKLDED---IDQELLRQLIRSGFSKRRKTILNSFTSGFVNVDKEKLKA 251
Query: 354 ALGDVGLPATAAA------DYK 369
L ++GL A DYK
Sbjct: 252 ILQELGLKENLRAENLSLEDYK 273
>gi|293375923|ref|ZP_06622184.1| dimethyladenosine transferase [Turicibacter sanguinis PC909]
gi|325838710|ref|ZP_08166625.1| dimethyladenosine transferase [Turicibacter sp. HGF1]
gi|292645445|gb|EFF63494.1| dimethyladenosine transferase [Turicibacter sanguinis PC909]
gi|325490760|gb|EGC93067.1| dimethyladenosine transferase [Turicibacter sp. HGF1]
Length = 291
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 132/249 (53%), Gaps = 11/249 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I +++ AA + + V+EIGPG G+LT + V+A E D +
Sbjct: 22 KKSFGQNFLTDTNILNKIVNAADLNDEVGVIEIGPGIGALTEFIARKAKKVVAYEIDPRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D +KV+ +D +K + S + F+ K + VVAN+P+ I+T ++
Sbjct: 82 IPILAETLAPYDNVKVIHQDILKADVASMIEEEFKDVKHIA----VVANLPYYITTPILM 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L+ V ++Q+E A RL P + +Y ++I V +Y+E + VP+T F
Sbjct: 138 GLIEKKLPIDWYVTMMQKEVAERLSANPG--SKDYNALSIAVQYYTEAKIALNVPKTVFI 195
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL---EI 351
P P VD++VV K+ AV + F +V +AF +RK ++ +L L ++
Sbjct: 196 PAPNVDSSVVKLT-KREQPAVAVENEDFFLEIVHAAFKQRRKTIQNNLNQHFNDLAKEDV 254
Query: 352 EKALGDVGL 360
K L + G+
Sbjct: 255 TKLLEEAGI 263
>gi|357136909|ref|XP_003570045.1| PREDICTED: probable dimethyladenosine transferase-like
[Brachypodium distachyon]
Length = 355
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 24/227 (10%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHM 175
KS GQH + N + D + A A ++ D VLEIGPGTG+LT LL AG V+A+E D M
Sbjct: 28 KSKGQHILKNPALVDSIIAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVELDPRM 87
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V + RF + Q++V+Q D +KC + F VANIP+ IS+
Sbjct: 88 VLELSRRFQGHPLLAQMQVIQGDVLKCDL--------------PYFDICVANIPYQISSP 133
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
+ +LL IF V++ Q E A+RLV +P + Y +++ V S + KV R
Sbjct: 134 LTFKLLSHPPIFRCAVIMFQREFAMRLVAQPG--DTLYCRLSVNVQLLSRVSHLLKVGRN 191
Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
NF P PKVD++VV +++ P V S K + +V FN K K L
Sbjct: 192 NFRPPPKVDSSVV--RIEPRKPLPPV-SFKEWDGLVRVCFNRKNKTL 235
>gi|403514251|ref|YP_006655071.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Lactobacillus
helveticus R0052]
gi|403079689|gb|AFR21267.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus helveticus R0052]
Length = 294
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 14/247 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA + GD V+EIGPG GSLT LL GA V A E D +
Sbjct: 25 KKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLDGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ D+ K++ +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L F+ + L++Q+E A RL E + EY P+ I V + + +V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISVQTEMDVKVALEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
+F P+PKVD++VV L + P + + K F +V F+ +RK L +L+ L
Sbjct: 200 NHNSFMPRPKVDSSVVV--LTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNNNLKTLIPD 257
Query: 349 LEIEKAL 355
E +AL
Sbjct: 258 SEKREAL 264
>gi|172056080|ref|YP_001812540.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15]
gi|171988601|gb|ACB59523.1| dimethyladenosine transferase [Exiguobacterium sibiricum 255-15]
Length = 292
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 140/265 (52%), Gaps = 13/265 (4%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
H T + L G +KSLGQ+++++ + + AA + VLEIGPG GSLT
Sbjct: 8 HRTKEILAKHGFSFKKSLGQNFLIDLNVLGNIVGAANLTPDSGVLEIGPGIGSLTEQSAK 67
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A+E DQ ++ ++ + A +KV+ D ++ + + + F ++ + V
Sbjct: 68 QAKKVVALEIDQRLLPILEDSLAPYPHVKVIHGDALELDLETIVDEEFTQQGITD--LAV 125
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ ++T +I ++L F +++++Q+E A R+ +P T Y ++I + +Y+
Sbjct: 126 VANLPYYVTTPIIMRILEARTPFRTLIMMIQKEVAERIGAQPG--TKAYGSLSIAIQYYA 183
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTS--TKSFFSMVSSAFNGKRKML 338
E E F VP+ F P P VD+AV+ +++ PAV + K FF + ++F +RK +
Sbjct: 184 EAEVCFTVPKQVFIPAPNVDSAVIRLNIRKE---PAVKTLDEKLFFEVTRASFAQRRKTI 240
Query: 339 RKSLQHLCTSLE---IEKALGDVGL 360
+L E +E AL + G+
Sbjct: 241 LNNLSSHFGKAEKEAVEAALHEAGI 265
>gi|450176911|ref|ZP_21886087.1| dimethyladenosine transferase [Streptococcus mutans SM1]
gi|449244380|gb|EMC42757.1| dimethyladenosine transferase [Streptococcus mutans SM1]
Length = 291
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV ED +K S + + + +
Sbjct: 65 AENAAEVMAFEIDDRLVSILADTLRDFDNIKVFNEDILK----SDLQTCIKEFANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVSKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADLK 265
>gi|293399847|ref|ZP_06643993.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306247|gb|EFE47490.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 285
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 128/252 (50%), Gaps = 10/252 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L + F +K+ GQ+++ + +++A +A V + +V EIGPG G+LT L
Sbjct: 11 TKEILETHDLFAKKNYGQNFLTEPSVVEKIARSAIVSDHCVVFEIGPGIGALTQYLCEYA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV- 222
V+ E D+ + ++ + + + V+ +DF+ +R + R G V+
Sbjct: 71 KEVVCFEIDERLPHVLADTLSEYTNVSVVLQDFLTIDLREWV-----NRYREKGMDVVIA 125
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEP 282
AN+P+ I+T ++ ++ + + +++Q+E A R + T EY ++I + +
Sbjct: 126 ANLPYYITTPILFKIFESNADIAAITVMMQKEVADRF-HAKVNTKEYNALSIITQYRCDV 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
KVP+ F P+P VD+AV+ F ++ + A +SFF+MV + F +RK + +
Sbjct: 185 RAVMKVPKNVFHPKPNVDSAVLQFTFRK---HYANLKEESFFAMVKACFKQRRKTILNNF 241
Query: 343 QHLCTSLEIEKA 354
Q C+ E KA
Sbjct: 242 QEYCSDKETAKA 253
>gi|357639797|ref|ZP_09137670.1| dimethyladenosine transferase [Streptococcus urinalis 2285-97]
gi|418417109|ref|ZP_12990307.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
urinalis FB127-CNA-2]
gi|357588251|gb|EHJ57659.1| dimethyladenosine transferase [Streptococcus urinalis 2285-97]
gi|410873165|gb|EKS21101.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
urinalis FB127-CNA-2]
Length = 290
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + VLEIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKRVNVLEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D ++++ +D +K +++ + +R K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILEDTLGHFDNVQIVNQDILKADLQTQL----KRFKNPDLPL 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSE-YRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ +L S+ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKVPFQEFVVMMQKEVADRI--SALPNSKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VP+T F P P VD+A++ ++ V + F + ++F +RK L
Sbjct: 179 YMTAKVAFVVPKTVFVPAPNVDSAILKMTRREEP-LVKVENEDFLFRVAKASFAHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S EI+ L
Sbjct: 238 WNNLTSHFGKSDEIKLKL 255
>gi|420137187|ref|ZP_14645182.1| dimethyladenosine transferase [Pseudomonas aeruginosa CIG1]
gi|421157632|ref|ZP_15616989.1| dimethyladenosine transferase [Pseudomonas aeruginosa ATCC 25324]
gi|403250028|gb|EJY63489.1| dimethyladenosine transferase [Pseudomonas aeruginosa CIG1]
gi|404550439|gb|EKA59188.1| dimethyladenosine transferase [Pseudomonas aeruginosa ATCC 25324]
Length = 268
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A +EG +LEIGPG G+LT LL +GA + IE DQ +
Sbjct: 10 RKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGARLDVIELDQDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++ +F + + Q D +K + SL E S +VV N+P+NIST +I
Sbjct: 70 IPLLKLKFGLESRFSLHQGDALKF----DLASLVE----SGEKLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E RL + ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLEHAPVIEDMHFMLQKEVVERLAA-TPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L + +IE A
Sbjct: 181 PPKVDSAIVRLTPFAEPPHPA-RDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAA 238
>gi|319891446|ref|YP_004148321.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius
HKU10-03]
gi|386320213|ref|YP_006016376.1| dimethyladenosine transferase [Staphylococcus pseudintermedius
ED99]
gi|317161142|gb|ADV04685.1| Dimethyladenosine transferase [Staphylococcus pseudintermedius
HKU10-03]
gi|323465384|gb|ADX77537.1| dimethyladenosine transferase [Staphylococcus pseudintermedius
ED99]
Length = 296
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 6/238 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +KSLGQ+++++ I +++ A+ + V+EIGPG GSLT L VL
Sbjct: 16 LNQYGFNFKKSLGQNFLIDVNIINRIIDASGIDHMTGVIEIGPGMGSLTEQLAKNAQHVL 75
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ ++ ++ + + + + V+ ED +K ++ + ++ S VVAN+P+
Sbjct: 76 AFEIDQRLIPVLDDTLSPYNNVTVINEDILKANVAEAI----QQHLSHCEKIMVVANLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ LL V+++Q+E RL + T Y ++I +Y+E
Sbjct: 132 YITTPILLTLLEQDLNIDGYVVMMQKEVGERL-NAQVGTKAYGSLSIVAQYYTETSRVLT 190
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
VP+T F P P VD+ VV +K+ + V + +FF M AF+ +RK + + Q+L
Sbjct: 191 VPKTVFMPPPNVDSIVVKL-MKRESPIVDVDNPNAFFKMTKGAFSQRRKTIYNNYQNL 247
>gi|42573814|ref|NP_975003.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
gi|10177517|dbj|BAB10912.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana]
gi|332010821|gb|AED98204.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
Length = 380
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 23/231 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G F KS GQH + N+ I D + ++ ++ D VLEIGPGTG+LT LL A V+A+E
Sbjct: 60 GLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEL 119
Query: 172 DQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
D+ MV ++R+R + D+L ++Q+D +K F VVANIP+N
Sbjct: 120 DKRMVEILRKRVSDHGFADKLTIIQKDVLKTDF--------------PHFDLVVANIPYN 165
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFK 287
IS+ ++ +L+ + F LLLQ+E + RL+ P S++ + + V ++ ++
Sbjct: 166 ISSPLVAKLVYGSNTFRSATLLLQKEFSRRLLANPG--DSDFNRLAVNVKLVADVKFVMD 223
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
V + F P PKVD++V+ K+ P V + + + + + F K K L
Sbjct: 224 VSKREFVPPPKVDSSVIRITPKEI--IPDV-NVQEWLAFTRTCFGKKNKTL 271
>gi|332798095|ref|YP_004459594.1| ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter
acetatoxydans Re1]
gi|438000996|ref|YP_007270739.1| Dimethyladenosine transferase [Tepidanaerobacter acetatoxydans Re1]
gi|332695830|gb|AEE90287.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter
acetatoxydans Re1]
gi|432177790|emb|CCP24763.1| Dimethyladenosine transferase [Tepidanaerobacter acetatoxydans Re1]
Length = 276
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 24/277 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQH++++S + AA + D VLEIGPG G LT L V+A+EKD+ ++
Sbjct: 10 KRLGQHFLIDSRPLLSMIEAAQLSPEDEVLEIGPGLGVLTLELGTRAKRVVAVEKDRQLI 69
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + +L+ED +K + SLF G KV+AN+P+ I+ +I +
Sbjct: 70 PVLDDLTRDFKNICILEEDVLKLDLEKMSESLF------GGRFKVIANLPYYITNPIIMK 123
Query: 237 LLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
++ ++ + VL++Q+E A RL P +Y ++I V Y++ + R +F P
Sbjct: 124 IIENRNMVTLAVLMVQKEVAQRLTACPG--KKDYGILSIAVKLYADVNMICTIGRESFLP 181
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQHLC----TSL 349
PKV++AVV L+Q P V FF +V +AF +RK ++ SL+ T L
Sbjct: 182 PPKVESAVVRLTLRQE---PRVQLKDESFFFKVVEAAFGERRKTIKNSLKSRLALAGTDL 238
Query: 350 E-IEKALGDVGLPATAAADYKFPITLPSTEYTLFMEH 385
+ I+KAL G+ A + TL EY E
Sbjct: 239 DIIDKALEAAGIDALRRGE-----TLSIEEYARLAEE 270
>gi|56552210|ref|YP_163049.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|384410979|ref|YP_005620344.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|62900473|sp|Q5NMX2.1|RSMA_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|56543784|gb|AAV89938.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|335931353|gb|AEH61893.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 278
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 21/242 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++L+S++ D++A V E+GPG G LT LL AGA V A+E+D+ +
Sbjct: 22 KRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALLKAGAKVTAVERDRRCL 81
Query: 177 GLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ E A DQL+V+ D ++ + +VAN+P+N+ T ++
Sbjct: 82 PALAELSAHFPDQLQVISGDAME----------IDEAAVLGEHVHIVANLPYNVGTALLI 131
Query: 236 QLL---PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+ L +S + L+ Q+E A R+ + T Y +++ + SE + F V R+
Sbjct: 132 RWLTAKTWQPWWSSLTLMFQKEVAERITA-KVGTPHYGRLSVLAQWRSEAKLSFPVHRSA 190
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL---QHLCTSL 349
F P PKV +AVV K D P S + + ++AFN +RKMLR+SL +H+ +L
Sbjct: 191 FVPPPKVMSAVVHLTPK---DQPEGLSLGTLEKITAAAFNQRRKMLRQSLKNIEHMMEAL 247
Query: 350 EI 351
E+
Sbjct: 248 EL 249
>gi|158425944|ref|YP_001527236.1| dimethyladenosine transferase [Azorhizobium caulinodans ORS 571]
gi|172047844|sp|A8HVI9.1|RSMA_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|158332833|dbj|BAF90318.1| rRNA 16S rRNA dimethylase [Azorhizobium caulinodans ORS 571]
Length = 291
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 138/274 (50%), Gaps = 20/274 (7%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
DD + + + G +KSLGQ+++L+ + ++A + EG V+E+GPG G LT
Sbjct: 5 DDLPPLREVIRAHGLSAQKSLGQNFLLDLNLTARIARGSGPLEGATVVEVGPGPGGLTRA 64
Query: 159 LLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216
LL GA V+AIE+D + + E A+ +L++++ D +K +R H+
Sbjct: 65 LLALGARKVIAIERDHRCIAALNEIAAAYPGRLEIIEGDALKVDVRPHL---------DG 115
Query: 217 GFAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273
A+VVAN+P+N+ T ++ L P FS + L+ Q E A R+V + Y +
Sbjct: 116 AEARVVANLPYNVGTQLLVGWLSTDPWPPWFSSLTLMFQREVAERIVA-GPDSKAYGRLA 174
Query: 274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNG 333
+ + ++ F V + F P PKV ++V+ + P + + + +AF
Sbjct: 175 VLTGWRAQARILFDVAPSAFVPPPKVTSSVIHVVPRA---EPVPCALRDLERVTEAAFGQ 231
Query: 334 KRKMLRKSLQHLCTSLEIEKALGDVGLPATAAAD 367
+RKMLR+SL+ L ++ L + G+ TA A+
Sbjct: 232 RRKMLRQSLKSL--GVDPLALLSETGIDETARAE 263
>gi|449909418|ref|ZP_21794240.1| dimethyladenosine transferase [Streptococcus mutans OMZ175]
gi|449918898|ref|ZP_21797609.1| dimethyladenosine transferase [Streptococcus mutans 1SM1]
gi|449947156|ref|ZP_21807232.1| dimethyladenosine transferase [Streptococcus mutans 11SSST2]
gi|450070613|ref|ZP_21847670.1| dimethyladenosine transferase [Streptococcus mutans M2A]
gi|450087244|ref|ZP_21854142.1| dimethyladenosine transferase [Streptococcus mutans NV1996]
gi|450105720|ref|ZP_21860057.1| dimethyladenosine transferase [Streptococcus mutans SF14]
gi|450144219|ref|ZP_21873907.1| dimethyladenosine transferase [Streptococcus mutans 1ID3]
gi|449150931|gb|EMB54679.1| dimethyladenosine transferase [Streptococcus mutans 1ID3]
gi|449159884|gb|EMB63183.1| dimethyladenosine transferase [Streptococcus mutans 1SM1]
gi|449168958|gb|EMB71751.1| dimethyladenosine transferase [Streptococcus mutans 11SSST2]
gi|449213714|gb|EMC14043.1| dimethyladenosine transferase [Streptococcus mutans M2A]
gi|449218286|gb|EMC18301.1| dimethyladenosine transferase [Streptococcus mutans NV1996]
gi|449224119|gb|EMC23771.1| dimethyladenosine transferase [Streptococcus mutans SF14]
gi|449261359|gb|EMC58836.1| dimethyladenosine transferase [Streptococcus mutans OMZ175]
Length = 291
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSKEVKVKLEQ----ALEAADIK 265
>gi|197105173|ref|YP_002130550.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
gi|226732606|sp|B4RBS4.1|RSMA_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|196478593|gb|ACG78121.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
Length = 285
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 12/240 (5%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+AL + G + +K+ GQH++L+ I ++A A V +GD+V+E+GPG G LT LL GA
Sbjct: 11 EALEAHGLWAKKAFGQHFLLDLNITRKIARLAQVGDGDVVIEVGPGPGGLTRALLETGAR 70
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
V+A+EKD+ L++E + L ++ D L+ E S+ A +V+N+
Sbjct: 71 VIAVEKDERFRPLLQEVADAAPHLTLVFGD---------ALTADEAALSAGRPAHLVSNL 121
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYK 285
P+N+ T ++ + L + + L+ Q+E A R+ + Y + + ++
Sbjct: 122 PYNVGTPLLIKWLTGPWTPASLTLMFQKEVADRITA-APGEDAYGRLAVIAQATADARPV 180
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
VP F P PKV++AVV + + A P+ + + ++AF +RKMLR SL+ L
Sbjct: 181 MDVPARAFTPPPKVESAVVRLEPRAA--RPSPERLDALQKVTAAAFGQRRKMLRSSLKAL 238
>gi|418071100|ref|ZP_12708374.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus rhamnosus R0011]
gi|423080252|ref|ZP_17068877.1| dimethyladenosine transferase [Lactobacillus rhamnosus ATCC 21052]
gi|357538594|gb|EHJ22614.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus rhamnosus R0011]
gi|357543317|gb|EHJ25348.1| dimethyladenosine transferase [Lactobacillus rhamnosus ATCC 21052]
Length = 294
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 6/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ + +I ++ AAA V + D V+EIGPG G+LT L + V+
Sbjct: 15 LKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSQQDDVIEIGPGIGALTQFLADQAHQVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E V+ ED +K ++ + + F+ + + KVVAN+P+
Sbjct: 75 ALEIDDRLLPILAETLTDYPNTTVVNEDVLKTNLTELVATHFDGKHT----LKVVANLPY 130
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ LL + +++Q+E A RL + + +Y ++I V ++ F
Sbjct: 131 YITTPILLHLLQARLPLHSMTVMMQKEVAARL-SATPGSKDYGSLSIAVQLVADVTTAFT 189
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
V R F P P VD+A+VT ++ AV + SF +V AF +RK L +L
Sbjct: 190 VSRHAFVPAPNVDSAIVTLT-QRPEPLAAVKNPDSFDRLVRGAFASRRKTLWNNL 243
>gi|284928980|ref|YP_003421502.1| dimethyladenosine transferase [cyanobacterium UCYN-A]
gi|284809439|gb|ADB95144.1| dimethyladenosine transferase [cyanobacterium UCYN-A]
Length = 274
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 131/239 (54%), Gaps = 20/239 (8%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
+PRK GQH++ ++ + +++ +A + + D VLEIGPGTG LT+ LL ++V AIE D+
Sbjct: 3 YPRKRFGQHWLKDNTVLERIIKSAHLTKIDKVLEIGPGTGILTSRLLPEVSSVTAIEVDR 62
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA---KVVANIPFNIS 230
+ + ++F L +LQED +K + LF + + F KVVANIP+NI+
Sbjct: 63 DLYEQLVKKFHYCKNLLLLQEDILK-------IDLFTEISNYNLFWPMNKVVANIPYNIT 115
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEY 284
++++LL P + +VLL+Q+E A R+ P Y ++ + + + Y
Sbjct: 116 NPILEKLLGSVSEPYNLPYEIIVLLVQKEVAKRITALPG--NKMYGALSAKIQYLAHCNY 173
Query: 285 KFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
VP F+P PKVD+A++T + D +V + +++ F+ +RKML +L+
Sbjct: 174 ICDVPSKAFYPAPKVDSAIITLR-PHILD-SSVLNRPHLEKLINLGFSSRRKMLHNNLK 230
>gi|450133673|ref|ZP_21870726.1| dimethyladenosine transferase [Streptococcus mutans NLML8]
gi|449150688|gb|EMB54445.1| dimethyladenosine transferase [Streptococcus mutans NLML8]
Length = 291
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKIAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSKEVKVKLEQ----ALEAADIK 265
>gi|310779117|ref|YP_003967450.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926]
gi|309748440|gb|ADO83102.1| dimethyladenosine transferase [Ilyobacter polytropus DSM 2926]
Length = 263
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 125/231 (54%), Gaps = 13/231 (5%)
Query: 116 RKSLGQHYMLNS-EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N E+ Q+ + V+E D++LEIGPG G+LT +LL A + V +E D+
Sbjct: 6 KKKFGQNFLTNQGEVLKQIMEVSGVEETDVILEIGPGEGALTELLLEASSKVNCVEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F + ++ +D + F+++ KVVANIP+ I++ +I
Sbjct: 66 LEKILIKKFDENPKFNLIMQDVLTVD--------FDKQIGEK--VKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ E+ +++Q+E A R+ S E + + V ++ + EY F +P+ F
Sbjct: 116 NKLIENRKYVDEIYIMVQKEVAERICAKS--GKERSTLTLAVEYFGDAEYLFTIPKEFFQ 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
P PKVD+A ++ KL++ +FF V ++F+ KRK L ++ L
Sbjct: 174 PVPKVDSAFMSIKLRKDNSRIEEIPEDTFFKYVKASFSNKRKNLINNISTL 224
>gi|239628929|ref|ZP_04671960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519075|gb|EEQ58941.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 288
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 13/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +AA + + D VLEIGPG G++T L V+A+E D ++
Sbjct: 22 QKKFGQNFLIDTHVLDKIISAAGITKEDCVLEIGPGIGTMTQYLAEHAGRVVAVEIDTNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + V+ D +K I L + KVVAN+P+ I+T +I
Sbjct: 82 LPILDETLKGYDNVTVINNDILKLDIN----KLVDEYNGGRPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
L GD+ V +++Q+E A R+ V P + +Y +++ V +Y+EP VP F
Sbjct: 137 GLF-EGDVPIDNVTVMVQKEVADRMQVGPG--SKDYGALSLAVQYYAEPYIVANVPPNCF 193
Query: 294 FPQPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQH 344
P+P V +AV+ +L + + P V K F +V ++FN +RK L+ L +
Sbjct: 194 IPRPNVGSAVI--RLTRYKEPPVKVEDPKLMFKLVRASFNQRRKTLQNGLNN 243
>gi|297616271|ref|YP_003701430.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM
12680]
gi|297144108|gb|ADI00865.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM
12680]
Length = 292
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 5/237 (2%)
Query: 103 ATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A ++A+ +K P+K LGQH++L+ + +A A + + D V+EIG G G+LT L
Sbjct: 9 ARVRAVLAKYNLHPKKRLGQHFLLDHNVLTSIAKACELNQNDYVVEIGAGIGALTGYLAQ 68
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
VLAIE D + ++E A D +K L D +K +I F +S KV
Sbjct: 69 EAKGVLAIEVDPDLSEPLKEVLAGRDNVKTLFGDILKLNIERETKQAFSLAPEAS--YKV 126
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSE 281
N+P+ I+T +I LL VL++Q E A R++ P T +Y + + V + +E
Sbjct: 127 CGNLPYYITTPIIFHLLATAPSMCWAVLMVQREVAERMLAPP-GTKDYGMLTVMVRYQAE 185
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
E +V F P+P+VD+AV+ ++A + A+ + F +V AF +RK +
Sbjct: 186 VEMVRRVSPNCFRPRPEVDSAVIRVTPRRARPW-AIRNEDVFKGLVKEAFQRRRKTI 241
>gi|189500122|ref|YP_001959592.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1]
gi|226729769|sp|B3EQT0.1|RSMA_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|189495563|gb|ACE04111.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1]
Length = 262
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 129/229 (56%), Gaps = 18/229 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQ+++ + I ++ +A +QE D VLEIGPG G+LT +L A+EKD+ +
Sbjct: 14 KKKLGQNFLTDQNICRKIVESAQLQENDHVLEIGPGFGALTTAILEVVPRFTAVEKDRIL 73
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+R + S+ +V++ DF+K + +S G +++ NIP++I+T ++
Sbjct: 74 AEFIRNEYPSV---RVIEMDFLKIDLEEL---------ASEGRLRIMGNIPYSITTPILF 121
Query: 236 QLLP-MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +IFSE L++Q E A RLV S + EY + + + + + Y FKV RT F
Sbjct: 122 KLLDNRRNIFSE-TLMMQHEVARRLV-ASPGSKEYGILAVQLQTFCDVTYLFKVNRTVFK 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P+P+VD+AVV+ K A T ++F V ++F +RK L +L+
Sbjct: 180 PRPEVDSAVVSIIPKTAIFDADETGFRNF---VRTSFGQRRKTLHNNLK 225
>gi|73748246|ref|YP_307485.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1]
gi|119365021|sp|Q3ZZE6.1|RSMA_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|73659962|emb|CAI82569.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1]
Length = 291
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 133/267 (49%), Gaps = 23/267 (8%)
Query: 87 ASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVL 146
ASA + A++++ T+KA RK LGQH++++ + +++ AAA ++ D V+
Sbjct: 10 ASAPSLMAQAKEMMEGYTLKA--------RKGLGQHFLISQGVLNKILAAADLKPTDTVI 61
Query: 147 EIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206
E+GPG G+LT LL V+A+E D ++ + E+F +++ D +K
Sbjct: 62 EVGPGLGALTEELLKRAGQVIAVELDDKLIDALTEKFKGYPNFRLIHSDILKTSP----- 116
Query: 207 SLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT 266
E K+VAN+P+ I++ V++Q L +V+++Q+E A +V +T
Sbjct: 117 ---EEILGQDVPYKLVANLPYYITSAVLRQFLEAKLKPESMVVMVQKEVAKNIVA---KT 170
Query: 267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSM 326
+ + + V FY P VP F+P P+VD+A+V + Q T V+ FF +
Sbjct: 171 GDMGLLTLSVRFYGNPSLVSVVPGGAFYPPPEVDSAIVKIVIPQTTIMEGVSEV-DFFKL 229
Query: 327 VSSAFNGKRKMLRKSLQHLCTSLEIEK 353
+ F +RK L L L L I K
Sbjct: 230 ARAGFGTRRKTL---LNALAQGLGISK 253
>gi|377556435|ref|ZP_09786142.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
gastricus PS3]
gi|376168485|gb|EHS87254.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
gastricus PS3]
Length = 297
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 134/251 (53%), Gaps = 8/251 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
+Y T + L G +K GQ+++ + + + + +A + +GD V+EIGPG G+LT VL
Sbjct: 9 NYRRTREILEKHGIHAKKGFGQNFLTDLNVLNGIVQSAHITQGDNVIEIGPGIGALTEVL 68
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A+E D ++ ++ + A + +KV+ +D +K ++ + + F +
Sbjct: 69 VKAAHQVVALEIDGDLLPVLDDVLAPYNNVKVIHQDILKANLPELIQTEFTNPQQP---I 125
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
KVVAN+P+ I++ ++ LL + + +++Q+E A RL +P T Y + + + +
Sbjct: 126 KVVANLPYYITSPILMNLLASEVNWDTICVMMQKEVAERLTAKPG--TKAYGSLTLAIEY 183
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSSAFNGKRKM 337
+ + F V R +F P P VD+A+V +Q + P + K F ++ F +RK
Sbjct: 184 QMQAKVAFNVSRRSFVPAPNVDSAIVVLTPRQ-NEIPELPFDDKRLFGLIRGCFAHRRKS 242
Query: 338 LRKSLQHLCTS 348
L +L+ L ++
Sbjct: 243 LWNNLKSLMSN 253
>gi|163868023|ref|YP_001609227.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476]
gi|189028801|sp|A9IRW8.1|RSMA_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|161017674|emb|CAK01232.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476]
Length = 276
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 131/260 (50%), Gaps = 15/260 (5%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
D+ + +++ G KSLGQ+++ + + ++A A EG VLEIGPG G LT
Sbjct: 4 DNLPPLREVIDTYGLQAHKSLGQNFLFDLNLTSKIAHQAGTIEGKPVLEIGPGPGGLTRA 63
Query: 159 LLNAGATVLAIEKDQHMV-GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217
LL GA V AIE+D+ + L+ +QLK++ D +K LF SS
Sbjct: 64 LLAKGAIVTAIERDERCIPALLEIEKHYPNQLKLICNDALK----QDFSKLF---GSSPE 116
Query: 218 FAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINI 274
+++AN+P+NI T ++ L P + + L+ Q E A R+ ++S Y +++
Sbjct: 117 KPRIIANLPYNIGTQLLLNWLLVEPWPPFYESMTLMFQREVAKRITAKP-QSSHYGRLSV 175
Query: 275 FVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGK 334
+ + + F VP F P PKV ++VV + P V S + + +AF +
Sbjct: 176 LTGWRTIAKIAFDVPPQAFIPAPKVTSSVVHIIPRAQ---PLVCSAQKLSLITKTAFGQR 232
Query: 335 RKMLRKSLQHLCTSLEIEKA 354
RKMLR++L+ L + +EKA
Sbjct: 233 RKMLRQNLKTLGGEIILEKA 252
>gi|335427871|ref|ZP_08554791.1| dimethyladenosine transferase [Haloplasma contractile SSD-17B]
gi|334893797|gb|EGM32006.1| dimethyladenosine transferase [Haloplasma contractile SSD-17B]
Length = 292
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 14/258 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++++ I + ++A + E V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSFGQNFLVDLNILKNIVSSADITEETGVIEIGPGIGALTEQLAKKAKKVVAYEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + + ++ ED +K ++ + F + + VVAN+P+ I+T ++
Sbjct: 84 IPILDETLQPYNNIIIINEDILKANVNKMIEEEFNGYEDIA----VVANLPYYITTPILM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ + +++Q+E A RL T EY + I VN+Y+ P+ VP+T F P
Sbjct: 140 GLIEKNLPINRYCVMMQKEVAKRL-SGGPNTKEYNSLTIAVNYYTIPKIVLTVPKTVFIP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKM----LRKSLQHLCTSL 349
+P VD+AVV ++ PAV FF +V +F +RK L++SL+ + T+
Sbjct: 199 KPNVDSAVVRLDKREE---PAVKVNDESFFFKVVRGSFIQRRKTIYNNLKQSLKGVLTTD 255
Query: 350 EIEKALGDVGLPATAAAD 367
+I+ AL V + A +
Sbjct: 256 DIKTALKAVDIKENARGE 273
>gi|26987143|ref|NP_742568.1| dimethyladenosine transferase [Pseudomonas putida KT2440]
gi|386010061|ref|YP_005928338.1| KsgA [Pseudomonas putida BIRD-1]
gi|395446781|ref|YP_006387034.1| dimethyladenosine transferase [Pseudomonas putida ND6]
gi|397694911|ref|YP_006532792.1| Dimethyladenosine transferase [Pseudomonas putida DOT-T1E]
gi|421524947|ref|ZP_15971568.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida LS46]
gi|33516928|sp|Q88QT6.1|RSMA_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|24981775|gb|AAN66032.1|AE016232_5 dimethyladenosine transferase [Pseudomonas putida KT2440]
gi|313496767|gb|ADR58133.1| KsgA [Pseudomonas putida BIRD-1]
gi|388560778|gb|AFK69919.1| dimethyladenosine transferase [Pseudomonas putida ND6]
gi|397331641|gb|AFO48000.1| Dimethyladenosine transferase [Pseudomonas putida DOT-T1E]
gi|402751410|gb|EJX11923.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida LS46]
Length = 267
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA ++ Q D +K F + KVV N+P+NIST +I
Sbjct: 70 VPILQHKFADRSNFRLHQGDALKFD--------FNQLGVPPRSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E R+ P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERMAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA +V AFN +RK LR +++ L S IE A
Sbjct: 180 PPPKVDSAIVRLVPHEVLPFPA-KDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEAA 238
>gi|374618902|ref|ZP_09691436.1| dimethyladenosine transferase [gamma proteobacterium HIMB55]
gi|374302129|gb|EHQ56313.1| dimethyladenosine transferase [gamma proteobacterium HIMB55]
Length = 278
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 13/239 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+++ + + +A A A +EGD V+EIGPG G+LT+ L ++G + AIE D+
Sbjct: 26 PRKRFGQNFLTDQGVITAIARAIAPREGDNVVEIGPGQGALTDALFDSGCAINAIEIDRD 85
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R F + D L + D +K F + ++ +VV N+P+NIST +I
Sbjct: 86 LQSQLRVMFFNRD-LTLHNADALKFD--------FSQLSKTANDLRVVGNLPYNISTPLI 136
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+LL + ++ +LQ+E RL P +T + +++ E E F+VP F
Sbjct: 137 FKLLENLGLIKDMHFMLQKEVVDRLAATPGTKT--WGRVSVMTQIDCEVESLFEVPPEAF 194
Query: 294 FPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
FPQPKV +A+V K P S + +V AF +RK LR +L+ + IE
Sbjct: 195 FPQPKVQSAIVRITPKTEPYRPEC-SRERLSRLVQIAFAQRRKTLRNNLKDVMNDARIE 252
>gi|409395477|ref|ZP_11246547.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Chol1]
gi|409395572|ref|ZP_11246637.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Chol1]
gi|409119838|gb|EKM96211.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Chol1]
gi|409119859|gb|EKM96231.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Chol1]
Length = 264
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 12/246 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A + G+ ++EIGPG G+LT LL++GA + +E D +
Sbjct: 9 RKRFGQNFLHDAGVIHRILRAIHPKAGERLVEIGPGQGALTEGLLDSGAHLDVVELDLDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +FA + + Q D +K F ++V N+P+NIST +I
Sbjct: 69 IPILQSKFAGRENFTLHQGDALKFD--------FAWLSQEPASLRIVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL EP ++ ++I V ++ E+ F V F
Sbjct: 121 HLLEHAGLIRDMHFMLQKEVVERLAAEPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 178
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA + +V AFN +RK LR +L+ L + IE A
Sbjct: 179 PAPKVDSAIVRLVPHETLPHPA-RDHRQLERVVREAFNQRRKTLRNTLKGLLDAEAIEAA 237
Query: 355 LGDVGL 360
D GL
Sbjct: 238 QVDGGL 243
>gi|386817169|ref|ZP_10104387.1| dimethyladenosine transferase [Thiothrix nivea DSM 5205]
gi|386421745|gb|EIJ35580.1| dimethyladenosine transferase [Thiothrix nivea DSM 5205]
Length = 260
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 133/253 (52%), Gaps = 16/253 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQH++ + I D++ A ++Q D V+EIGPG G+LT LL + +E D+ +
Sbjct: 9 KKRFGQHFLHDRNIIDKMLRALSLQPTDRVVEIGPGPGALTFPLLEMLPRLDVVEIDRDV 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +E+ + +L + +D +K I + S +++ N+P+NIST +I
Sbjct: 69 IAWWQEQPQAQGKLHIHAQDALKLDIPG--------LRGDSEPLRLIGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L + +++ +LQ+E R+ EP+ + +Y +++ V +Y E Y K+ F
Sbjct: 121 HFLQHREHIRDMLFMLQKEVVDRITAEPN--SKDYSRLSVMVQYYCETHYLLKIGPGAFS 178
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+AVV K Y A + F +V+ AF+ +RK LR +L+ L T+ ++E
Sbjct: 179 PPPKVDSAVVYLKPWATPPYVAKDEAQ-FGKLVAQAFSQRRKTLRNTLKELLTAEQMES- 236
Query: 355 LGDVGLPATAAAD 367
VG+ T A+
Sbjct: 237 ---VGIDPTRRAE 246
>gi|449935656|ref|ZP_21803511.1| dimethyladenosine transferase [Streptococcus mutans 2ST1]
gi|450078135|ref|ZP_21850840.1| dimethyladenosine transferase [Streptococcus mutans N3209]
gi|450155730|ref|ZP_21878437.1| dimethyladenosine transferase [Streptococcus mutans 21]
gi|449166325|gb|EMB69269.1| dimethyladenosine transferase [Streptococcus mutans 2ST1]
gi|449210357|gb|EMC10821.1| dimethyladenosine transferase [Streptococcus mutans N3209]
gi|449236792|gb|EMC35692.1| dimethyladenosine transferase [Streptococcus mutans 21]
Length = 291
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|397675927|ref|YP_006517465.1| ribosomal RNA small subunit methyltransferase A [Zymomonas mobilis
subsp. mobilis ATCC 29191]
gi|395396616|gb|AFN55943.1| Ribosomal RNA small subunit methyltransferase A [Zymomonas mobilis
subsp. mobilis ATCC 29191]
Length = 278
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 21/242 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++L+S++ D++A V E+GPG G LT LL AGA V A+E+D+ +
Sbjct: 22 KRLGQNFLLDSQLLDRIARVPGDLTQKAVYEVGPGPGGLTRALLKAGAKVTAVERDRRCL 81
Query: 177 GLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ E A DQL+V+ D ++ + +VAN+P+N+ T ++
Sbjct: 82 PALAELSAHFPDQLQVISGDAME----------IDEAAVLGEHVHIVANLPYNVGTALLI 131
Query: 236 QLLP---MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+ L +S + L+ Q+E A R+ + T Y +++ + SE + F V R+
Sbjct: 132 RWLTAKIWQPWWSSLTLMFQKEVAERITA-KVGTPHYGRLSVLAQWRSEAKLSFPVHRSA 190
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL---QHLCTSL 349
F P PKV +AVV K D P S + + ++AFN +RKMLR+SL +H+ +L
Sbjct: 191 FVPPPKVMSAVVHLTPK---DQPEGLSLGTLEKITAAAFNQRRKMLRQSLKNIEHMMEAL 247
Query: 350 EI 351
E+
Sbjct: 248 EL 249
>gi|387786808|ref|YP_006251904.1| dimethyladenosine transferase [Streptococcus mutans LJ23]
gi|379133209|dbj|BAL69961.1| dimethyladenosine transferase [Streptococcus mutans LJ23]
Length = 291
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTLILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVSKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADLK 265
>gi|269926972|ref|YP_003323595.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798]
gi|269790632|gb|ACZ42773.1| dimethyladenosine transferase [Thermobaculum terrenum ATCC BAA-798]
Length = 288
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 132/239 (55%), Gaps = 9/239 (3%)
Query: 98 DDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
++++H L G +P+K LGQ+++++ ++ + A+ + D +LEIGPGTG LT
Sbjct: 2 NNNFHDPRLILKKYGLYPKKGLGQNFLISPKVLRTILQASEITPQDTILEIGPGTGVLTR 61
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217
L A V+AIE D+ +V ++R+ A + ++Q + ++ + L K+
Sbjct: 62 -HLAAARCVVAIELDETLVQILRQELAQYPNIHIVQGNILEIEHPQLVAELCGIEKNY-- 118
Query: 218 FAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVN 277
K++ N+P+ I++ I++ L + S V++++Q+E A R+ + S + + V
Sbjct: 119 --KIIGNLPYYITSHAIRRFLEIQPSPSLVIIMVQKEVAERITATPPKMSL---LAVSVQ 173
Query: 278 FYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336
+Y+ PE V RT F P P+VD+AV+ ++++ +P + S +F +VS+ F KRK
Sbjct: 174 YYAIPEMVTLVRRTAFIPPPEVDSAVLRLRVREHPLFPDIPS-DIYFRIVSAGFAQKRK 231
>gi|115481328|ref|NP_001064257.1| Os10g0183900 [Oryza sativa Japonica Group]
gi|110288720|gb|ABG65951.1| dimethyladenosine transferase, putative, expressed [Oryza sativa
Japonica Group]
gi|113638866|dbj|BAF26171.1| Os10g0183900 [Oryza sativa Japonica Group]
gi|215704636|dbj|BAG94264.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218184228|gb|EEC66655.1| hypothetical protein OsI_32926 [Oryza sativa Indica Group]
Length = 364
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 117/227 (51%), Gaps = 24/227 (10%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHM 175
KS GQH + N + D + A ++ D VLEIGPGTG+LT LL AG V+A+E D M
Sbjct: 36 KSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPRM 95
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V + RF +LKV+Q D +KC + F VANIP+ IS+
Sbjct: 96 VLELNRRFQGDPLASRLKVIQGDVLKCDL--------------PYFDICVANIPYQISSP 141
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
+ +LL IF V++ Q E A+RLV +P S Y +++ V S + KV R
Sbjct: 142 LTFKLLSHRPIFRCAVIMFQREFAMRLVAQPG--DSLYCRLSVNVQLLSRVSHLLKVGRN 199
Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
NF P PKVD++VV +++ P V S K + +V FN K K L
Sbjct: 200 NFRPPPKVDSSVV--RIEPRKPLPPV-SFKEWDGLVRLCFNRKNKTL 243
>gi|388467103|ref|ZP_10141313.1| dimethyladenosine transferase [Pseudomonas synxantha BG33R]
gi|388010683|gb|EIK71870.1| dimethyladenosine transferase [Pseudomonas synxantha BG33R]
Length = 270
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKPNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAA 238
>gi|397691054|ref|YP_006528308.1| dimethyladenosine transferase [Melioribacter roseus P3M]
gi|395812546|gb|AFN75295.1| dimethyladenosine transferase [Melioribacter roseus P3M]
Length = 265
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 129/230 (56%), Gaps = 18/230 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K GQ+Y+ + I +++ V+EGD ++EIGPG G+LT +L + +E D+
Sbjct: 7 PLKRFGQNYLKDKNIIEKIIEEFGVKEGDKIIEIGPGRGALTEILYQRTDDLTLVEIDKR 66
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++E F + K++ DF+K ++ LS + +V+ NIP+NI++ ++
Sbjct: 67 VIETLKENFPN---AKIINRDFLKLNLSE--LS------APDNKLRVIGNIPYNITSPIL 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ + S+ +L++Q E A R+ + T +Y +++ +NF+++ + FK+ F+
Sbjct: 116 FKLIEERESVSDALLMVQYEVAKRITS-TPGTKDYGILSVIMNFFTDVKLCFKISPNVFY 174
Query: 295 PQPKVDAAVVTFKLKQAT--DYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P+PKV +A++ K + T D+ + F +V +AF +RK LR SL
Sbjct: 175 PKPKVHSAIIKIKFNKITAEDF----DDRLFIDIVKAAFGKRRKTLRNSL 220
>gi|148545687|ref|YP_001265789.1| dimethyladenosine transferase [Pseudomonas putida F1]
gi|148509745|gb|ABQ76605.1| dimethyladenosine transferase [Pseudomonas putida F1]
Length = 267
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ +FA ++ Q D +K F + KVV N+P+NIST +I
Sbjct: 70 VPILHHKFADRSNFRLHQGDALKFD--------FNQLGVPPRSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E R+ P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERMAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA +V AFN +RK LR +++ L S IE A
Sbjct: 180 PPPKVDSAIVRLVPHEVLPFPA-KDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEAA 238
>gi|110634113|ref|YP_674321.1| dimethyladenosine transferase [Chelativorans sp. BNC1]
gi|118600875|sp|Q11HG9.1|RSMA_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|110285097|gb|ABG63156.1| dimethyladenosine transferase [Chelativorans sp. BNC1]
Length = 275
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 19/253 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TV 166
+ G F RK+LGQ+++L+ + ++A A + VLE+GPG G LT LL GA V
Sbjct: 13 IERHGLFARKALGQNFLLDLNLTRRIARTAGGLDNATVLEVGPGPGGLTRALLMEGARRV 72
Query: 167 LAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
+AIE+D+ + + E A +L+++ D +K F +SG K+VAN+
Sbjct: 73 VAIERDERCIAALEEIAAHYPGRLEIVAGDAMKAD--------FAALAGNSGDVKIVANL 124
Query: 226 PFNISTD-VIKQLLP--MGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSE 281
P+NI T+ +I+ L P + + L+ Q E A R+V +P +S Y + + + +E
Sbjct: 125 PYNIGTELLIRWLTPQTWPPFYESMTLMFQREVAERIVAKPG--SSHYGRLGVLAGWRTE 182
Query: 282 PEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341
F VP F P PKV ++VV K+ D P +AF +RKMLR+S
Sbjct: 183 ARIAFDVPPQAFTPPPKVISSVV--KIVPRAD-PLTVEVGRLARTTEAAFGQRRKMLRQS 239
Query: 342 LQHLCTSLEIEKA 354
L+ + +EKA
Sbjct: 240 LRSVGGEALLEKA 252
>gi|449966212|ref|ZP_21812240.1| dimethyladenosine transferase [Streptococcus mutans 15VF2]
gi|449170285|gb|EMB73008.1| dimethyladenosine transferase [Streptococcus mutans 15VF2]
Length = 291
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 138/267 (51%), Gaps = 14/267 (5%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
+A+ + RF +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A
Sbjct: 10 RAILERHRFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAA 69
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+A E D +V ++ + D +KV+ ED +K +++ + + KVVAN
Sbjct: 70 EVMAFEIDDRLVSILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPE 283
+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y +
Sbjct: 126 LPYYITTPILMHLIESKIPFAEFVVMMQKEVAERISAKPN--TKAYGSLSIAVQYYMTAK 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL- 342
F VPRT F P P VD+A++ ++ V FF + +AF +RK L +L
Sbjct: 184 VAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVSKAAFVHRRKTLWNNLI 242
Query: 343 QHLCTSLEIEKALGDVGLPATAAADYK 369
H E++ L A AAD K
Sbjct: 243 SHFGKLEEVKVKLEQ----ALEAADLK 265
>gi|238928059|ref|ZP_04659819.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531]
gi|238884019|gb|EEQ47657.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531]
Length = 292
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 128/229 (55%), Gaps = 14/229 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L +GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVRAIVDAADLSPADTVLEIGPGIGTLTQGLAESGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + ++ D +K I +L+L + F KVVAN+P+ I+T ++
Sbjct: 87 AVLAETLKGYDNVAIVPGDILKLDIL-RILNL----GAGEQF-KVVANLPYYITTPILMA 140
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + +V ++Q+E A+R+ P + +Y ++I V +Y++ VP F P
Sbjct: 141 LLEQHLPIARMVTMVQKEVAVRMTARPG--SKDYGALSIAVQYYTDAHIVMDVPPRAFMP 198
Query: 296 QPKVDAAVVTFKLKQATDYPAV--TSTKSFFSMVSSAFNGKRKMLRKSL 342
P+V +AV+ ++++ P+V T K FF +V +AF +RK L +L
Sbjct: 199 APEVTSAVIACRVRET---PSVCPTDEKLFFRLVRAAFGQRRKTLLNAL 244
>gi|409350932|ref|ZP_11233871.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
equicursoris CIP 110162]
gi|407877088|emb|CCK85929.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
equicursoris CIP 110162]
Length = 293
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 121/239 (50%), Gaps = 16/239 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ +A AA +QEGD V+EIGPG GSLT LL G V A E D +
Sbjct: 25 KKNLGQNFLVDLNAVQGIAEAAGIQEGDQVIEIGPGIGSLTEQLLLYGGKVFAYEVDDSL 84
Query: 176 VGLVRERFAS-ID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ ID + K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILETELPQRIDGEPLSSRFKLVLKDVLKANFAEDLAGFFDLTKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I LL G F+ + L++Q+E A RL +Y P+ I V + V
Sbjct: 141 ITTPIIFSLLESGLNFTSLTLMMQKEVADRLAA-GPGNKDYGPLTIAVQTRMAVDLALNV 199
Query: 289 PRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
+F PQPKVD+AVV LK D V + F +V F +RK L +L+ L
Sbjct: 200 GHASFMPQPKVDSAVVVLTPLKTPVD---VGDPEKFNRLVKLCFAQRRKTLSNNLKTLV 255
>gi|309775087|ref|ZP_07670100.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
3_1_53]
gi|308917201|gb|EFP62928.1| dimethyladenosine transferase [Erysipelotrichaceae bacterium
3_1_53]
Length = 285
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 123/235 (52%), Gaps = 8/235 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L + G F +K+ GQ++++ S I D++A A + +V EIGPG G+LT L
Sbjct: 11 TKEILETHGMFAKKNYGQNFLIESGIVDKIARHAVISNHCVVFEIGPGIGALTQYLCEYA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V++ E D+ + ++ + D +++ DF++ + +H +++ V A
Sbjct: 71 KKVISFEIDERLPEVLADTLQEYDNFELVMTDFLETDL-NHWCEPYKKEGCD---IVVAA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T ++ ++ G + +++Q+E A R ++ T +Y ++I + E
Sbjct: 127 NLPYYITTPILFKIFESGAPIDAITVMMQKEVADRFA-ATVNTKDYNALSIITQYRCEVL 185
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
KVP+ F P+P VD+AV+ F+ K+ P+ + FF +V + F +RK +
Sbjct: 186 PVMKVPKNVFLPKPNVDSAVLQFRFKET---PSDIDEELFFPLVKACFRQRRKTI 237
>gi|77412114|ref|ZP_00788438.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111]
gi|77161821|gb|EAO72808.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111]
Length = 290
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 136/263 (51%), Gaps = 15/263 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ A D ++V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILAGTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVSS-AFNGKRKM 337
+ F VPRT F P P VD+ ++ + D P V+ + FF VS AF +RK
Sbjct: 180 MTAKVSFIVPRTVFVPAPNVDSVILKMVRR---DQPVVSVQDEDFFFRVSKVAFVHRRKT 236
Query: 338 LRKSL-QHLC----TSLEIEKAL 355
L +L H T ++EKAL
Sbjct: 237 LWNNLTSHFGKSEDTKAKLEKAL 259
>gi|341821161|emb|CCC57502.1| ribosomal RNA small subunit methyltransferase A [Weissella
thailandensis fsh4-2]
Length = 298
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 5/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+NS G RKSLGQ+++ + +I + A VQ D V+EIGPG G+LT L + V+
Sbjct: 17 MNSFGINTRKSLGQNFLTDIKILKNIVTAGDVQPTDNVIEIGPGIGALTEQLARSAKQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ A D + V+ +D + + + ++ E K+VAN+P+
Sbjct: 77 AFEIDDRLMPVLEHTMAPYDNVTVINQDILSVDLET---AIQEHFSDPDAPLKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ Q+L F+ +V+++Q+E A RL + T +Y + + V + + F
Sbjct: 134 YITTPILMQVLQSNVQFANIVVMMQKEVASRL-SAEVGTKDYGALTLAVQYRVDATLAFT 192
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
V RT F P P VD+A+V+ ++ + + K F + F +RK L +L
Sbjct: 193 VSRTAFIPNPNVDSAIVSLTPREPLEV-LPHNEKQLFKLFKVGFTMRRKTLWNNL 246
>gi|295702279|ref|YP_003595354.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
gi|294799938|gb|ADF37004.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
Length = 292
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 8/224 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ A + E +EIGPG G+LT L VLA E DQ +
Sbjct: 23 KKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLAKRAKKVLAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + KV+ +D +K ++ + FE + VVAN+P+ ++T ++
Sbjct: 83 LPILADTLSPYSNAKVIHQDVLKADLKGMLEQEFENIED----LMVVANLPYYVTTPILM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +P T EY ++I + +Y+E E VP+T F
Sbjct: 139 KLLEEQIPVRGIVVMLQKEVAERIAAKPG--TKEYGSLSIAIQYYTEAETVMIVPKTVFN 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
PQP VD+AV+ L++ V FF +V ++F +RK +
Sbjct: 197 PQPNVDSAVIRL-LRRPKPAVEVQDEAFFFQVVRASFGQRRKTI 239
>gi|450000779|ref|ZP_21825358.1| dimethyladenosine transferase [Streptococcus mutans N29]
gi|450007025|ref|ZP_21827560.1| dimethyladenosine transferase [Streptococcus mutans NMT4863]
gi|449185321|gb|EMB87209.1| dimethyladenosine transferase [Streptococcus mutans N29]
gi|449186970|gb|EMB88774.1| dimethyladenosine transferase [Streptococcus mutans NMT4863]
Length = 291
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 137/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLGDFDNVKIVNEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGALSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|330505265|ref|YP_004382134.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01]
gi|328919551|gb|AEB60382.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01]
Length = 269
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 128/240 (53%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A +E + +LEIGPG G++T LL +GA + IE D +
Sbjct: 9 RKRFGQNFLHDAGVIDRILRAIRAKEDERLLEIGPGQGAITEGLLGSGAQLDVIELDLDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +F + + ++ Q D +K F R +++ +VV N+P+NIST +I
Sbjct: 69 IPILQNKFGANPRFRLNQGDALKFD--------FARLEAAPRSLRVVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E R+ P ++ ++I V ++ E+ F V F
Sbjct: 121 HLLDNAPLIRDMHFMLQKEVVERMAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 178
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V + +PA + +V AFN +RK LR +L+ L + IE A
Sbjct: 179 PPPKVDSAIVRLVPHETLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKQLLPAEAIEAA 237
>gi|312963419|ref|ZP_07777901.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6]
gi|311282225|gb|EFQ60824.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6]
Length = 270
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNTLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAA 238
>gi|120437829|ref|YP_863515.1| dimethyladenosine transferase [Gramella forsetii KT0803]
gi|117579979|emb|CAL68448.1| dimethyladenosine transferase [Gramella forsetii KT0803]
Length = 281
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 13/230 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQH++ + I ++A + + VLEIGPGTG LT LL A V IE D
Sbjct: 26 KKHLGQHFLTDENIAAKIADTLSYNGYEKVLEIGPGTGVLTKHLLEKDAEVHVIEIDTES 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V + + + + ++ ++DF+K + +F + + FA ++ N P+NIST ++
Sbjct: 86 VEYLESHYLHL-RGRIHEKDFLK----HDLGQIFGQEQ----FA-IIGNFPYNISTQIVF 135
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
++L M D E + Q+E A R+ E + Y +++ + E EY F VP + F P
Sbjct: 136 KVLQMRDQIPEFSGMFQKEVAKRICEKEGNKT-YGILSVLTQAFYEAEYLFTVPPSVFNP 194
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PKVD+ V+ +L++ ++ + K FF +V ++FN +RK LR SL+ L
Sbjct: 195 PPKVDSGVL--RLRRKENFSLDCNEKLFFRIVKTSFNQRRKTLRNSLKSL 242
>gi|78043122|ref|YP_361409.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans
Z-2901]
gi|119365012|sp|Q3A8X5.1|RSMA_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|77995237|gb|ABB14136.1| dimethyladenosine transferase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 291
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 16/232 (6%)
Query: 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG 177
LGQH++ + I ++ A + + D VLEIGPG G LT +L A V+AIE D+ ++
Sbjct: 23 GLGQHFLTDFGILAKIVEKAEITKDDAVLEIGPGAGVLTRLLAQAAKYVVAIEIDKKLLP 82
Query: 178 LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK----VVANIPFNISTDV 233
++ E + + V+ D + + M E+ GF +VAN+P+ ++ +
Sbjct: 83 VLAETTGDLGNVVVVNADAREINFDRVMA---EQTGGEFGFEGKPYLIVANLPYYATSPL 139
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
I ++ G S + L++Q+E A R+ +P + Y +++ ++SEP KVPRT
Sbjct: 140 IFKVFEEGYKVSSMTLMMQKEVAERITAKPGSKI--YGSLSVACQYFSEPRIVLKVPRTV 197
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTK--SFFSMVSSAFNGKRKMLRKSL 342
FFP P+V++AVV F LK+ + +TS + FF +V +AF +RK + KSL
Sbjct: 198 FFPPPEVESAVVRFTLKENS----LTSEERLKFFQIVRAAFATRRKTIAKSL 245
>gi|421453233|ref|ZP_15902589.1| Dimethyladenosine transferase [Streptococcus salivarius K12]
gi|400181542|gb|EJO15809.1| Dimethyladenosine transferase [Streptococcus salivarius K12]
Length = 290
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + + + V+ ED +K +++ + K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILEDTLRDHENVNVINEDVLKADLQTRVKEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ + Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--SKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V F + ++F +RK L
Sbjct: 179 YMTAKVAFVVPRTVFVPAPNVDSAILKMTRREQP-LVEVKDEDFLFRVAKASFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTNHFGKSEEVKTKL 255
>gi|399063934|ref|ZP_10747044.1| dimethyladenosine transferase [Novosphingobium sp. AP12]
gi|398031396|gb|EJL24783.1| dimethyladenosine transferase [Novosphingobium sp. AP12]
Length = 276
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 20/245 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++L+ ++ D++AA EG VLE+GPG G LT LL AGA V AIE D+ +
Sbjct: 22 KALGQNFLLDEQLLDRIAAIPGSLEGQQVLEVGPGPGGLTRALLRAGAVVTAIEMDRRCL 81
Query: 177 GLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ E + +L+V++ D +K + +LF+ G + +N+P+N+ T +
Sbjct: 82 PALAELGEAFPGKLRVIEGDALKIDPK----TLFD------GPYHIASNLPYNVGTALFT 131
Query: 236 QLL---PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
L + + L+ QEE A R++ EP + S Y + + + S P+ KV R+
Sbjct: 132 GWLSSEAWPPQWLSLTLMFQEEVARRIIAEPDI--SAYGRLAVLAQWRSVPKLALKVHRS 189
Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI 351
F P PKV +A+V A D S + + +AF +RKMLR+SL+ + +L+
Sbjct: 190 AFTPPPKVMSAIVHVVPDAAPDG---VSMRVLERVTEAAFGQRRKMLRQSLKGMPGALDA 246
Query: 352 EKALG 356
+ LG
Sbjct: 247 LETLG 251
>gi|408410474|ref|ZP_11181687.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
66c]
gi|408410695|ref|ZP_11181899.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
66c]
gi|407875161|emb|CCK83705.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
66c]
gi|407875382|emb|CCK83493.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
66c]
Length = 293
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 121/239 (50%), Gaps = 16/239 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ +A AA +QEGD V+EIGPG GSLT LL G V A E D +
Sbjct: 25 KKNLGQNFLVDLNAVQGIAEAAGIQEGDQVIEIGPGIGSLTEQLLLYGGKVFAYEVDDSL 84
Query: 176 VGLVRERFAS-ID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ ID + K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILETELPQRIDGEPLSSRFKLVLKDVLKANFAEDLAGFFDLTKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I LL G F+ + L++Q+E A RL + +Y P+ I V V
Sbjct: 141 ITTPIIFSLLESGLNFTSLTLMMQKEVADRLAA-GPGSKDYGPLTIAVQTRMAVNLALNV 199
Query: 289 PRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
+F PQPKVD+AVV LK D V + F +V F +RK L +L+ L
Sbjct: 200 GHASFMPQPKVDSAVVVLTPLKTPVD---VGDPEKFNRLVKLCFAQRRKTLSNNLKTLV 255
>gi|407368273|ref|ZP_11114805.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas mandelii JR-1]
Length = 272
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E R+ P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNASLIRDMHFMLQKEVVQRMAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EI A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKLLLSNDEITAA 238
>gi|303234855|ref|ZP_07321480.1| dimethyladenosine transferase [Finegoldia magna BVS033A4]
gi|302493973|gb|EFL53754.1| dimethyladenosine transferase [Finegoldia magna BVS033A4]
Length = 283
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 136/262 (51%), Gaps = 21/262 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ + K++ ED +K L E F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRENFKIINEDVLKV-------DLNELNHEDKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L DI + +++Q+E A R+V + + +Y +++FV S+ + P+T F PQ
Sbjct: 136 LFNYRDIIESITVMVQKEVANRMV-ADVGSKDYASLSLFVKQNSDAKIILNAPKTVFMPQ 194
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK--- 353
PKVD+AVV KLK+ + + ++ S F+ +RK + S +++ EK
Sbjct: 195 PKVDSAVVNMKLKKLDED---IDQELLRQLIRSGFSKRRKTILNSFTSGFVNVDKEKLKA 251
Query: 354 ALGDVGLPATAAA------DYK 369
L ++GL A DYK
Sbjct: 252 ILQELGLKENLRAENLSLEDYK 273
>gi|421770168|ref|ZP_16206869.1| Dimethyladenosine transferase [Lactobacillus rhamnosus LRHMDP2]
gi|421772754|ref|ZP_16209407.1| Dimethyladenosine transferase [Lactobacillus rhamnosus LRHMDP3]
gi|411182696|gb|EKS49841.1| Dimethyladenosine transferase [Lactobacillus rhamnosus LRHMDP2]
gi|411183168|gb|EKS50308.1| Dimethyladenosine transferase [Lactobacillus rhamnosus LRHMDP3]
Length = 294
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 124/235 (52%), Gaps = 6/235 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ + +I ++ AAA V + D V+EIGPG G+LT L + V+
Sbjct: 15 LKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSQQDDVIEIGPGIGALTQFLADQAHQVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K ++ + + F+ + KVVAN+P+
Sbjct: 75 ALEIDDRLLPILAETLADYPNTTVVNEDVLKTNLTELVATHFDGNHT----LKVVANLPY 130
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ LL + +++Q+E A RL + + +Y ++I V ++ F
Sbjct: 131 YITTPILLHLLRARLPLHSMTVMMQKEVAARL-SAAPGSKDYGSLSIAVQLVADVATAFT 189
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
V R F P P VD+A+VT ++ AV + SF +V AF +RK L +L
Sbjct: 190 VSRHAFVPAPNVDSAIVTLT-QRPEPLAAVKNPDSFDRLVRGAFVSRRKTLWNNL 243
>gi|440737963|ref|ZP_20917513.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas fluorescens BRIP34879]
gi|440381538|gb|ELQ18065.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas fluorescens BRIP34879]
Length = 270
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGNTNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNASIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAA 238
>gi|398873142|ref|ZP_10628407.1| dimethyladenosine transferase [Pseudomonas sp. GM74]
gi|398200427|gb|EJM87339.1| dimethyladenosine transferase [Pseudomonas sp. GM74]
Length = 269
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL++GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLSSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++F+ + Q D +K F + G +VV N+P+NIST +I
Sbjct: 70 IPILNQQFSGKSNFNLHQGDALKFD--------FNSLNAVPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNSHLIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNAEIEAA 238
>gi|404496164|ref|YP_006720270.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Geobacter
metallireducens GS-15]
gi|418065412|ref|ZP_12702785.1| dimethyladenosine transferase [Geobacter metallireducens RCH3]
gi|118600869|sp|Q39W34.1|RSMA_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78193773|gb|ABB31540.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
[Geobacter metallireducens GS-15]
gi|373562152|gb|EHP88369.1| dimethyladenosine transferase [Geobacter metallireducens RCH3]
Length = 275
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 135/246 (54%), Gaps = 8/246 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+ +G RK+LGQ+++++ + ++A ++ D +LE+GPG G+LT +L + A ++
Sbjct: 1 MRGEGIRARKALGQNFLVDRHVLARIADIVDMRPDDRILEVGPGKGALTEMLAHRCARLV 60
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D +V ++R+ F +++++ D ++ +R L +E KV AN+P+
Sbjct: 61 AVELDTRLVPVLRQAFRDNPRVEIVHGDILEIDLRD--LLAYE----GGERWKVAANLPY 114
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
NIST V+ L D+FS +VL+LQ+E RL S T +Y +++F + + +
Sbjct: 115 NISTPVLFAFLDNRDLFSRLVLMLQKEVGDRLAA-SPGTKDYGILSVFFQLHFDVTREMI 173
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
V +F P PKVD+AV++F + AV + F +V AF+ +RK L L++
Sbjct: 174 VRPGSFHPVPKVDSAVLSF-VPLEKPRVAVGDEQYFRRLVKGAFSMRRKTLWNCLKNAGL 232
Query: 348 SLEIEK 353
L E+
Sbjct: 233 GLSGEQ 238
>gi|294496912|ref|YP_003560612.1| dimethyladenosine transferase [Bacillus megaterium QM B1551]
gi|294346849|gb|ADE67178.1| dimethyladenosine transferase [Bacillus megaterium QM B1551]
Length = 292
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 8/224 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ A + E +EIGPG G+LT L VLA E DQ +
Sbjct: 23 KKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLAKRAKKVLAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + KV+ +D +K ++ + FE + VVAN+P+ ++T ++
Sbjct: 83 LPILADTLSPYSNAKVIHQDVLKADLKGTLEQEFENIED----LMVVANLPYYVTTPILM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +P T EY ++I + +Y+E E VP+T F
Sbjct: 139 KLLEEQIPVRGIVVMLQKEVADRIAAKPG--TKEYGSLSIAIQYYTEAETVMIVPKTVFN 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
PQP VD+AV+ L++ V FF +V ++F +RK +
Sbjct: 197 PQPNVDSAVIRL-LRRPKPAVEVQDEAFFFQVVRASFGQRRKTI 239
>gi|239630423|ref|ZP_04673454.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|301067575|ref|YP_003789598.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus
casei str. Zhang]
gi|385821272|ref|YP_005857659.1| Dimethyladenosine transferase [Lactobacillus casei LC2W]
gi|385824464|ref|YP_005860806.1| Dimethyladenosine transferase [Lactobacillus casei BD-II]
gi|417981761|ref|ZP_12622425.1| dimethyladenosine transferase [Lactobacillus casei 12A]
gi|417984584|ref|ZP_12625203.1| dimethyladenosine transferase [Lactobacillus casei 21/1]
gi|417997317|ref|ZP_12637576.1| dimethyladenosine transferase [Lactobacillus casei M36]
gi|418011963|ref|ZP_12651709.1| dimethyladenosine transferase [Lactobacillus casei Lc-10]
gi|418013041|ref|ZP_12652703.1| dimethyladenosine transferase [Lactobacillus casei Lpc-37]
gi|239526706|gb|EEQ65707.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|300439982|gb|ADK19748.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
casei str. Zhang]
gi|327383599|gb|AEA55075.1| Dimethyladenosine transferase [Lactobacillus casei LC2W]
gi|327386791|gb|AEA58265.1| Dimethyladenosine transferase [Lactobacillus casei BD-II]
gi|410521164|gb|EKP96129.1| dimethyladenosine transferase [Lactobacillus casei 12A]
gi|410524423|gb|EKP99332.1| dimethyladenosine transferase [Lactobacillus casei 21/1]
gi|410533077|gb|EKQ07765.1| dimethyladenosine transferase [Lactobacillus casei M36]
gi|410551212|gb|EKQ25280.1| dimethyladenosine transferase [Lactobacillus casei Lc-10]
gi|410556238|gb|EKQ30151.1| dimethyladenosine transferase [Lactobacillus casei Lpc-37]
Length = 298
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 125/236 (52%), Gaps = 8/236 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ +S+I ++ AA + D V+EIGPG G+LT L ++ V+
Sbjct: 17 LKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADSAHQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K + + + F+ + + KVVAN+P+
Sbjct: 77 ALEIDDRLLPILDETLADYPNATVVNEDVLKTDLGALVAEHFDGKHT----LKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ LL + +++Q+E A RL + + EY ++I V + F
Sbjct: 133 YITTPILLHLLRAQLPLHSMTVMMQKEVAERL-SATPGSKEYGSLSIAVQLVASVATAFT 191
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
V R F P P VD+A+VT L Q T+ A+T SF +V AF +RK L +L
Sbjct: 192 VSRHAFVPAPNVDSAIVT--LTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNL 245
>gi|449893205|ref|ZP_21788604.1| dimethyladenosine transferase [Streptococcus mutans SF12]
gi|449255991|gb|EMC53827.1| dimethyladenosine transferase [Streptococcus mutans SF12]
Length = 291
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV ED +K S + + + +
Sbjct: 65 AENAAEVMAFEIDDRLVSILADTLRDFDNIKVFNEDILK----SDLQTCIKEFANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSKEVKVKLEQ----ALEAADIK 265
>gi|381186442|ref|ZP_09894012.1| dimethyladenosine transferase [Flavobacterium frigoris PS1]
gi|379651286|gb|EIA09851.1| dimethyladenosine transferase [Flavobacterium frigoris PS1]
Length = 259
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 124/240 (51%), Gaps = 13/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQH++ + I +A ++ + VLEIGPG G LT LL+ IE D
Sbjct: 7 KKHLGQHFLKDESIAKAIADTINLEGYEDVLEIGPGMGVLTKYLLDKPINTYVIEIDTES 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V + E + + K++ +DF+K +I +FE ++ FA ++ N P+NIST ++
Sbjct: 67 VTYLDENYPKLKD-KIISKDFLKYNIN----EVFEGKQ----FA-IIGNFPYNISTQIVF 116
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
+ L + E + Q E A R+ E T Y +++ + + EY F V F P
Sbjct: 117 KTLELKHQIPEFAGMFQREVAQRICEKK-GTKAYGILSVLAQAFYDVEYLFTVDENVFIP 175
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
PKV + V+ ++++ DY S K FF++V +AF +RK LR SL+ L S E+ + +
Sbjct: 176 PPKVKSGVM--RMRRKADYSLPCSEKLFFTVVKTAFQQRRKTLRNSLKTLNLSDELREDI 233
>gi|398875249|ref|ZP_10630427.1| dimethyladenosine transferase [Pseudomonas sp. GM67]
gi|398883045|ref|ZP_10638006.1| dimethyladenosine transferase [Pseudomonas sp. GM60]
gi|398197618|gb|EJM84594.1| dimethyladenosine transferase [Pseudomonas sp. GM60]
gi|398208179|gb|EJM94917.1| dimethyladenosine transferase [Pseudomonas sp. GM67]
Length = 272
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 12/240 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL I ++ +LQ+E RL P ++ ++I V ++ E+ F V F
Sbjct: 122 HLLHNAGIIRDMHFMLQKEVVERLAAGPG--GGDWGRLSIMVQYHCRVEHLFNVGPGAFN 179
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKVD+A+V +PA + +V AFN +RK LR +L+ L ++ EI A
Sbjct: 180 PPPKVDSAIVRLVPHAVLPHPA-KDHRLLERVVREAFNQRRKTLRNTLKLLLSNDEITAA 238
>gi|417558087|ref|ZP_12209080.1| Dimethyladenosine transferase (rRNA methylation) KsgA [Xylella
fastidiosa EB92.1]
gi|338179331|gb|EGO82284.1| Dimethyladenosine transferase (rRNA methylation) KsgA [Xylella
fastidiosa EB92.1]
Length = 297
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 123/240 (51%), Gaps = 9/240 (3%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K+LGQH++++ D++ Q D ++EIGPG G++T LL ++ AIE D+
Sbjct: 42 PKKALGQHFLVDRYYIDRIIHVINPQPNDHIVEIGPGQGAITLPLLKCCGSLTAIELDRD 101
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ + I +L ++ D + LS+ ++ + ++V N+P+NIS+ ++
Sbjct: 102 LIAPLTAAATPIGKLDIIHRDVLTVD-----LSILAKQGNKK--LRLVGNLPYNISSPIL 154
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L I +++ +LQ+E R+ P + Y +++ + + E F VP F
Sbjct: 155 FHVLQQAAIIADMHFMLQKEVVDRMAAPP-GSKVYGRLSVMLQAWCEVTTMFVVPPEAFQ 213
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
P PKV++A+ + T + TK F +V +AF +RK LR SL +CT E A
Sbjct: 214 PPPKVNSAITRLVPRDPTTI-RIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHA 272
>gi|255994696|ref|ZP_05427831.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989]
gi|255993409|gb|EEU03498.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989]
Length = 285
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 14/229 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K GQ+++++ I ++ +A + D VLEIGPG G+LT + +V+ +E D+
Sbjct: 24 PNKRYGQNFLIDYNIVQKITDSAGLTSSDRVLEIGPGIGTLTREISKKAGSVVVVEVDKK 83
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++ + +K++ +D K ++ L KV+ N+P+ I+T ++
Sbjct: 84 LIPVLDSTLSHCSNIKIVNQDIFKYNVGDDFLDT----------VKVIGNLPYYITTPIV 133
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL +E+V+++Q+E A R + + + + V +YSE E F V + F+
Sbjct: 134 MWLLEEVPQATEIVIMMQKEVAKRFAAKQ-GSRDSSAVTLAVQYYSEIEELFDVSKHCFY 192
Query: 295 PQPKVDAAVVTFKLKQATDYP-AVTSTKSFFSMVSSAFNGKRKMLRKSL 342
P PKVD+ VV +LK+ T+ P AV S K F + +F +RK L SL
Sbjct: 193 PAPKVDSTVV--RLKRHTENPVAVKSEKLLFECIKKSFEKRRKTLINSL 239
>gi|297720837|ref|NP_001172781.1| Os02g0122900 [Oryza sativa Japonica Group]
gi|255670560|dbj|BAH91510.1| Os02g0122900, partial [Oryza sativa Japonica Group]
Length = 131
Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 71/85 (83%), Gaps = 2/85 (2%)
Query: 89 ACIVCARSQ-DDDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVL 146
A +V A S D YH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VL
Sbjct: 35 ATVVSAASGVTDGYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVL 94
Query: 147 EIGPGTGSLTNVLLNAGATVLAIEK 171
EIGPGTGSLT LL+AGATV A+EK
Sbjct: 95 EIGPGTGSLTAALLDAGATVFAVEK 119
>gi|449877012|ref|ZP_21783091.1| dimethyladenosine transferase [Streptococcus mutans S1B]
gi|449991610|ref|ZP_21821940.1| dimethyladenosine transferase [Streptococcus mutans NVAB]
gi|449180887|gb|EMB83020.1| dimethyladenosine transferase [Streptococcus mutans NVAB]
gi|449251422|gb|EMC49434.1| dimethyladenosine transferase [Streptococcus mutans S1B]
Length = 291
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 13/272 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV ED +K S + + + +
Sbjct: 65 AENAAEVMAFEIDDRLVSILADTLRDFDNIKVFNEDILK----SDLQTCIKEFANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + +AF +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMTRREQP-LVQVQDEDFFFRVGKAAFVHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
+L H S E++ L A AAD K
Sbjct: 238 WNNLTSHFGKSEEVKVKLEQ----ALEAADIK 265
>gi|313123062|ref|YP_004033321.1| ribosomal RNA small subunit methyltransferase a [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312279625|gb|ADQ60344.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 296
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 132/255 (51%), Gaps = 19/255 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E D +
Sbjct: 25 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDHSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V + +
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAVQTQMSVDLALE 198
Query: 288 VPRTNFFPQPKVDAAVVTFK-LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
V +F PQPKVD+AVV L++ D V K F +V F +RK L +L+ L
Sbjct: 199 VGHASFMPQPKVDSAVVVLTPLEKPAD---VGDRKQFNRVVKLCFAQRRKTLANNLKTLL 255
Query: 347 TSLEI-EKALGDVGL 360
E EK L D+ L
Sbjct: 256 PDKEDREKLLADLDL 270
>gi|357144702|ref|XP_003573385.1| PREDICTED: probable dimethyladenosine transferase-like
[Brachypodium distachyon]
Length = 354
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 118/227 (51%), Gaps = 24/227 (10%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHM 175
KS GQH + N + D + A A ++ D VLEIGPGTG+LT LL AG V+A+E D M
Sbjct: 27 KSKGQHILKNPALVDSIIAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVELDPRM 86
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V + RF +LKV+Q D +KC + F VANIP+ IS+
Sbjct: 87 VLELSRRFQGHPLSSRLKVIQGDVLKCDL--------------PYFDICVANIPYQISSP 132
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRT 291
+ +LL IF V++ Q E A+RLV +P + Y +++ V S + KV R
Sbjct: 133 LTFKLLSHRPIFRCAVIMFQREFAMRLVAQPG--DTLYCRLSVNVQLLSRVSHLLKVGRN 190
Query: 292 NFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
NF P PKVD++VV +++ P V S K + +V FN K K L
Sbjct: 191 NFRPPPKVDSSVV--RIEPRKPLPPV-SFKEWDGLVRVCFNRKNKTL 234
>gi|297587466|ref|ZP_06946110.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516]
gi|297574155|gb|EFH92875.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516]
Length = 283
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 137/262 (52%), Gaps = 21/262 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KALGQNFLIDGNLIENIIDFSDITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ D +++ ED +K L E + F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRDNFQIINEDVLKV-------DLNELNHGAKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L DI + +++Q+E A R+V + + +Y +++FV S+ + P+T F PQ
Sbjct: 136 LFNYRDIIESITVMIQKEVANRMV-ADVGSKDYASLSLFVKQNSDAKIILNAPKTVFMPQ 194
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK--- 353
PKVD+AVV KLK+ + + ++ S F+ +RK + S +++ +K
Sbjct: 195 PKVDSAVVNMKLKKLDED---IDQELLRQLIRSGFSKRRKTIVNSFTSGFVNVDKDKLKA 251
Query: 354 ALGDVGLPATAAA------DYK 369
L ++GL A DYK
Sbjct: 252 ILQELGLKENLRAENLSLEDYK 273
>gi|447918645|ref|YP_007399213.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas poae RE*1-1-14]
gi|445202508|gb|AGE27717.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas poae RE*1-1-14]
Length = 270
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D +LEIGPG G+LT LL +G + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLASGGQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKANFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL I ++ +LQ+E RL ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLNNASIIRDMHFMLQKEVVERLAA-GPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L ++ EIE A
Sbjct: 181 PPKVDSAIVRLVPHAVLPHPA-KDHKLLERVVREAFNQRRKTLRNTLKALLSNAEIEAA 238
>gi|392958417|ref|ZP_10323929.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus macauensis ZFHKF-1]
gi|391875587|gb|EIT84195.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus macauensis ZFHKF-1]
Length = 291
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 8/236 (3%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+T + L G +KSLGQ+++++ I + A A + E +EIGPG G+LT +
Sbjct: 8 QSTKEILKKHGFTFKKSLGQNFLIDRNILSNIVAQANLTEESGAIEIGPGIGALTEFIAR 67
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A E DQ ++ +++E A V+ D ++ + + F+ + V
Sbjct: 68 EAKKVVAFEIDQRLLPILKETLAPYPHASVIHSDILEADVHEVITREFQGIED----IMV 123
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ ++T +I +LL +V ++Q+E A RL +P T EY ++I + +Y+
Sbjct: 124 VANLPYYVTTPIIMKLLTEKLPIRGIVCMIQKEVADRLAAKPG--TKEYNSLSIAIQYYA 181
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRK 336
E E KVP+T F P P VD+AV+ +++ +V FF+++ ++F +RK
Sbjct: 182 EAETVMKVPKTVFVPAPNVDSAVIRLTIRKEPPI-SVKDETFFFALIRASFGQRRK 236
>gi|107099578|ref|ZP_01363496.1| hypothetical protein PaerPA_01000591 [Pseudomonas aeruginosa PACS2]
gi|254243686|ref|ZP_04937008.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
2192]
gi|386056662|ref|YP_005973184.1| dimethyladenosine transferase [Pseudomonas aeruginosa M18]
gi|451983550|ref|ZP_21931829.1| Dimethyladenosine transferase [Pseudomonas aeruginosa 18A]
gi|126197064|gb|EAZ61127.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
2192]
gi|347302968|gb|AEO73082.1| dimethyladenosine transferase [Pseudomonas aeruginosa M18]
gi|451758789|emb|CCQ84352.1| Dimethyladenosine transferase [Pseudomonas aeruginosa 18A]
Length = 268
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 124/239 (51%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A +EG +LEIGPG G+LT LL +GA + IE DQ +
Sbjct: 10 RKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGARLDVIELDQDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++ +F + + Q D +K S + S +VV N+P+NIST +I
Sbjct: 70 IPLLKLKFGLESRFSLHQGDALKFDFASLV--------ESGEKLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E RL + ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLEYAPVIEDMHFMLQKEVVERLAA-TPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L + +IE A
Sbjct: 181 PPKVDSAIVRLTPFAEPPHPA-RDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAA 238
>gi|191639502|ref|YP_001988668.1| dimethyladenosine transferase [Lactobacillus casei BL23]
gi|409998367|ref|YP_006752768.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
casei W56]
gi|190713804|emb|CAQ67810.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus
casei BL23]
gi|406359379|emb|CCK23649.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
casei W56]
Length = 302
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 125/236 (52%), Gaps = 8/236 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ +S+I ++ AA + D V+EIGPG G+LT L ++ V+
Sbjct: 21 LKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADSAHQVV 80
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K + + + F+ + + KVVAN+P+
Sbjct: 81 ALEIDDRLLPILDETLADYPNATVVNEDVLKTDLGALVAEHFDGKHT----LKVVANLPY 136
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ LL + +++Q+E A RL + + EY ++I V + F
Sbjct: 137 YITTPILLHLLRAQLPLHSMTVMMQKEVAERL-SATPGSKEYGSLSIAVQLVASVATAFT 195
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATD-YPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
V R F P P VD+A+VT L Q T+ A+T SF +V AF +RK L +L
Sbjct: 196 VSRHAFVPAPNVDSAIVT--LTQRTEPLAALTDPASFDRLVRGAFASRRKTLWNNL 249
>gi|116054320|ref|YP_788765.1| dimethyladenosine transferase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889333|ref|YP_002438197.1| dimethyladenosine transferase [Pseudomonas aeruginosa LESB58]
gi|254237194|ref|ZP_04930517.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
C3719]
gi|296387098|ref|ZP_06876597.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAb1]
gi|355647009|ref|ZP_09054762.1| ribosomal RNA small subunit methyltransferase A [Pseudomonas sp.
2_1_26]
gi|392982005|ref|YP_006480592.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Pseudomonas
aeruginosa DK2]
gi|416855756|ref|ZP_11911677.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa 138244]
gi|416873060|ref|ZP_11917187.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa 152504]
gi|419756074|ref|ZP_14282426.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa PADK2_CF510]
gi|421172357|ref|ZP_15630132.1| dimethyladenosine transferase [Pseudomonas aeruginosa CI27]
gi|421178504|ref|ZP_15636117.1| dimethyladenosine transferase [Pseudomonas aeruginosa E2]
gi|115589541|gb|ABJ15556.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169125|gb|EAZ54636.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
C3719]
gi|218769556|emb|CAW25316.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
LESB58]
gi|334842654|gb|EGM21257.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa 138244]
gi|334845358|gb|EGM23921.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa 152504]
gi|354828151|gb|EHF12278.1| ribosomal RNA small subunit methyltransferase A [Pseudomonas sp.
2_1_26]
gi|384397736|gb|EIE44147.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa PADK2_CF510]
gi|392317510|gb|AFM62890.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa DK2]
gi|404537953|gb|EKA47516.1| dimethyladenosine transferase [Pseudomonas aeruginosa CI27]
gi|404548353|gb|EKA57308.1| dimethyladenosine transferase [Pseudomonas aeruginosa E2]
gi|453045974|gb|EME93692.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa PA21_ST175]
Length = 268
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 10/239 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A +EG +LEIGPG G+LT LL +GA + IE DQ +
Sbjct: 10 RKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGARLDVIELDQDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++ +F + + Q D +K SL E S +VV N+P+NIST +I
Sbjct: 70 IPLLKLKFGLESRFSLHQGDALKF----DFASLVE----SGEKLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL + ++ +LQ+E RL + ++ ++I V ++ E+ F V F P
Sbjct: 122 HLLEHAPVIEDMHFMLQKEVVERLAA-TPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNP 180
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKVD+A+V +PA K +V AFN +RK LR +L+ L + +IE A
Sbjct: 181 PPKVDSAIVRLTPFAEPPHPA-RDPKLLERVVREAFNQRRKTLRNTLKPLLSVEDIEAA 238
>gi|342215032|ref|ZP_08707701.1| dimethyladenosine transferase [Veillonella sp. oral taxon 780 str.
F0422]
gi|341590138|gb|EGS33387.1| dimethyladenosine transferase [Veillonella sp. oral taxon 780 str.
F0422]
Length = 287
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 15/229 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ + D++ AA ++ GD VLE+GPG G+LT L +GA V ++E D+ ++
Sbjct: 25 KKLGQNFLIKRTVVDKIVQAAELEVGDAVLEVGPGIGTLTQGLAQSGANVTSVELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++++ D +K +I M F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLEAYDNVRIIHGDVLKVNIPELM--------DHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL +V+++Q+E A R++ +P T Y +++ V +Y++P VP F P
Sbjct: 136 LLESKLPIERLVVMVQKEVAERMIAKPG--TKMYGALSVAVQYYTDPYIVMDVPPKAFLP 193
Query: 296 QPKVDAAVVTFKLKQATDYPA-VTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P+V +AV+ L+ ++ P V S FF V + F +RK +++
Sbjct: 194 APEVTSAVICCPLR--SEPPVKVHSEAYFFRAVKAGFAQRRKTFSNTMK 240
>gi|388259330|ref|ZP_10136503.1| rRNA (adenine-N6,N6)-dimethyltransferase [Cellvibrio sp. BR]
gi|387936768|gb|EIK43326.1| rRNA (adenine-N6,N6)-dimethyltransferase [Cellvibrio sp. BR]
Length = 280
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 130/247 (52%), Gaps = 14/247 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++++ I + + Q+ D ++EIGPG G++T +L ++ + IE D+ +
Sbjct: 14 RKRFGQNFLIDHGIIRDIVRSVHPQKTDQIVEIGPGKGAITQLLADSCDNLSVIELDRDL 73
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ +F K+ Q D ++ F + + ++V N+P+NIST +I
Sbjct: 74 VPWLKVKFEHHPNFKLFQADALQFD--------FNQLIKNEQPLRIVGNLPYNISTPLIF 125
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL + ++ +LQ+E R+ +P Y + I V +Y E F VP T+F
Sbjct: 126 HLLTYANKVQDMHFMLQKEVVKRMAAQPG--DGAYGRLGIMVQYYCAVEDLFDVPPTSFD 183
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P PKVD+A+V +L P V + KS ++V+ AF +RK LR SL+ L ++ ++E
Sbjct: 184 PAPKVDSAIV--RLTPYAQLPYVANNIKSLETLVNVAFQQRRKTLRNSLKQLLSAEQMES 241
Query: 354 ALGDVGL 360
D+GL
Sbjct: 242 LPVDLGL 248
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,710,481,729
Number of Sequences: 23463169
Number of extensions: 224822459
Number of successful extensions: 610738
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4658
Number of HSP's successfully gapped in prelim test: 1145
Number of HSP's that attempted gapping in prelim test: 593881
Number of HSP's gapped (non-prelim): 5970
length of query: 397
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 252
effective length of database: 8,957,035,862
effective search space: 2257173037224
effective search space used: 2257173037224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)