BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015990
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With Adenosine In Space Group P212121
pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
Length = 271
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 22/261 (8%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G F K GQ+++++ ++ AA G V E+GPG G+LT LL AGA V
Sbjct: 14 LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
AIEKD + ++ E + + V Q+ L+ + G + +VAN+P+
Sbjct: 73 AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
+I+T ++ +LL G F+ +V L+Q+E A R+ +T Y + + V ++ E F
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAERMTA-RPKTPAYGVLTLRVAHHAVAERLFD 178
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC- 346
+P FFP PKV +++V A D P + F +V +AF +RK L +L
Sbjct: 179 LPPGAFFPPPKVWSSLVRLTPTGALDDPGL------FRLVEAAFGKRRKTLLNALAAAGY 232
Query: 347 TSLEIEKALGDVGLPATAAAD 367
+E+AL +GLP A+
Sbjct: 233 PKARVEEALRALGLPPRVRAE 253
>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
Length = 271
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 22/261 (8%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G F K GQ+++++ ++ AA G V E+GPG G+LT LL AGA V
Sbjct: 14 LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
AIEKD + ++ E + + V Q+ L+ + G + +VAN+P+
Sbjct: 73 AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
+I+T ++ +LL G F+ +V L+Q+E A R +T Y + + V ++ E F
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAERXTA-RPKTPAYGVLTLRVAHHAVAERLFD 178
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC- 346
+P FFP PKV +++V A D P + F +V +AF +RK L +L
Sbjct: 179 LPPGAFFPPPKVWSSLVRLTPTGALDDPGL------FRLVEAAFGKRRKTLLNALAAAGY 232
Query: 347 TSLEIEKALGDVGLPATAAAD 367
+E+AL +GLP A+
Sbjct: 233 PKARVEEALRALGLPPRVRAE 253
>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit
Methyltransferase A From Burkholderia Pseudomallei
Length = 279
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 121/240 (50%), Gaps = 22/240 (9%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL----NAGATV 166
+G F RK GQ+++++ + D + AA + G+ ++EIGPG G+LT ++ G+ +
Sbjct: 12 QGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPL 71
Query: 167 LAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
A+E D+ ++G + +RF + +L L DF R +++
Sbjct: 72 HAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSI-----------ARPGDEPSLRIIG 120
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEP 282
N+P+NIS+ ++ L+ + + +LQ E R+V EP T + +++ + +
Sbjct: 121 NLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQYRYVM 178
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
+ VP +F P PKVD+A+V + PAV +V++AF+ +RKMLR +L
Sbjct: 179 DKLIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPA-VLGEVVTAAFSQRRKMLRNTL 237
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 132/269 (49%), Gaps = 26/269 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
GQH + N I D++ AA ++ DIVLEIG GTG+LT LL V+ I+ D M+ V
Sbjct: 21 GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEV 80
Query: 180 RER--FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
++R + + L+V + D +K ++F + F ANIP+ IS+ +I +L
Sbjct: 81 KKRCLYEGYNNLEVYEGDAIK--------TVFPK------FDVCTANIPYKISSPLIFKL 126
Query: 238 LPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQP 297
+ +F VL+ Q+E A R++ ++ S Y + I V + + V R++F P P
Sbjct: 127 ISHRPLFKCAVLMFQKEFAERML-ANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPP 185
Query: 298 KVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGD 357
KVD+ +V K+++ +T+ + +++ F+ KRK L + +E +
Sbjct: 186 KVDSVIVKLIPKESS---FLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNYKN 242
Query: 358 VGLPATAAADYKFPITLPSTEYTL-FMEH 385
+ + P+ P +Y L +EH
Sbjct: 243 -----WCTLNKQVPVNFPFKKYCLDVLEH 266
>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
pdb|3TPZ|B Chain B, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
Length = 273
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 10/246 (4%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+G RK GQ+++ + + D + +A Q+G ++EIGPG +LT + + IE
Sbjct: 7 QGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIE 66
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ + ++ +L + Q+D + + E + +V N P+NIS
Sbjct: 67 LDRDLAARLQTHPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNPPYNIS 119
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
T ++ L D +++ +LQ+E RLV + Y +++ +Y +VP
Sbjct: 120 TPLMFHLFSYTDAIADMHFMLQKEVVNRLVA-GPNSKAYGRLSVMAQYYCNVIPVLEVPP 178
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
+ F P PKVD+AVV +P V + + + AFN +RK +R SL +L S+E
Sbjct: 179 SAFTPPPKVDSAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLF-SVE 236
Query: 351 IEKALG 356
+ +G
Sbjct: 237 VLTGMG 242
>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|B Chain B, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|C Chain C, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|D Chain D, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
Length = 255
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 114/230 (49%), Gaps = 11/230 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ +S + ++ +A Q+ D ++EIGPG G+LT+ LL + +E D+ +
Sbjct: 4 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++++ + + Q D ++ F K+ +VV N+P+NIST ++
Sbjct: 64 VAFLQKKYNQQKNITIYQNDALQFD--------FSSVKTDKPL-RVVGNLPYNISTPLLF 114
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L + LQ+E +R + + + +Y +++ ++ + Y F V F P
Sbjct: 115 HLFSQIHCIEDXHFXLQKE-VVRRITAEVGSHDYGRLSVXAQYFCDNTYLFTVSPQAFTP 173
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
P+V++A++ + + P + +V AF+ +RK + +L+ L
Sbjct: 174 PPRVESAIIRL-IPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKKL 222
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 23/239 (9%)
Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
+GQH + N I + + AA++ D+VLE+GPGTG++T LL V+A E D +V
Sbjct: 6 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAE 65
Query: 179 VRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +R +L+VL D +K + F VAN+P+ IS+ +
Sbjct: 66 LHKRVQGTPVASKLQVLVGDVLKTDL--------------PFFDTCVANLPYQISSPFVF 111
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL F +L+ Q E ALRLV +P + Y ++I + ++ KV + NF
Sbjct: 112 KLLLHRPFFRCAILMFQREFALRLVAKPGDKL--YCRLSINTQLLARVDHLMKVGKNNFR 169
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P PKV+++VV + K P + + + +V F K K L + + +EK
Sbjct: 170 PPPKVESSVVRIEPKNP---PPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEK 225
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 22/248 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K LGQ ++++ ++ +A + + D+VLEIG G G LT L V IE D+
Sbjct: 24 PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS 83
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + ++++ D +K + + F KVVAN+P+ IS+ +
Sbjct: 84 LEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPIT 131
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+L+ G F VL+ Q E A R+V + T +Y +++ V ++ E KVP + F+
Sbjct: 132 FKLIKRG--FDLAVLMYQYEFAKRMVAAA-GTKDYGRLSVAVQSRADVEIVAKVPPSAFY 188
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL----- 349
P+PKV +A+V K + + + + F + + F + K +RK+L L
Sbjct: 189 PKPKVYSAIVKIKPNKGKYH--IENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKD 246
Query: 350 EIEKALGD 357
E++K L D
Sbjct: 247 EMKKILED 254
>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|4ADV|V Chain V, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
Length = 252
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 10/236 (4%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
Q+++ + + D + +A Q+G ++EIGPG +LT + + IE D+ + ++
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
+L + Q+D + + E + +V N+P+NIST ++ L
Sbjct: 61 THPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSY 113
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
D +++ +LQ+E RLV + Y +++ +Y +VP + F P PKVD
Sbjct: 114 TDAIADMHFMLQKEVVNRLVA-GPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 172
Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALG 356
+AVV +P V + + + AFN +RK +R SL +L S+E+ +G
Sbjct: 173 SAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLF-SVEVLTGMG 226
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 31/233 (13%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
+KS GQH +++ + ++A ++EG+ V+E+G GTG+LT VLL L IE D+
Sbjct: 5 KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 64
Query: 175 MVGLVRERFASI--DQLKVLQEDFVK---CHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
MV E SI ++L+V+ ED K C + + KVV N+P+N+
Sbjct: 65 MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 106
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++ +I+ + D V ++Q+E A +L + + + +++FV + + Y VP
Sbjct: 107 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL--QGKKDTGW--LSVFVRTFYDVNYVMTVP 162
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
F P PKV +AV+ KL + +P V K++ ++ F +RK+LRK +
Sbjct: 163 PRFFVPPPKVQSAVI--KLVKNEKFP-VKDLKNYKKFLTKIFQNRRKVLRKKI 212
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 31/233 (13%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
+KS GQH +++ + ++A ++EG+ V+E+G GTG+LT VLL L IE D+
Sbjct: 6 KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 65
Query: 175 MVGLVRERFASI--DQLKVLQEDFVK---CHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
MV E SI ++L+V+ ED K C + + KVV N+P+N+
Sbjct: 66 MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 107
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++ +I+ + D V ++Q+E A +L + + + +++FV + + Y VP
Sbjct: 108 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL--QGKKDTGW--LSVFVRTFYDVNYVMTVP 163
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
F P PKV +AV+ KL + +P V K++ ++ F +RK+LRK +
Sbjct: 164 PRFFVPPPKVQSAVI--KLVKNEKFP-VKDLKNYKKFLTKIFQNRRKVLRKKI 213
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 22/242 (9%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
Q ++++ ++ +A + + D+VLEIG G G LT L V IE D+ +
Sbjct: 1 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYAN 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
+ + ++++ D +K + + F KVVAN+P+ IS+ + +L+
Sbjct: 61 KLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIKR 108
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
G F VL+ Q E A R+V + T +Y +++ V ++ E KVP + F+P+PKV
Sbjct: 109 G--FDLAVLMYQYEFAKRMVAAA-GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVY 165
Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKAL 355
+A+V K + + + + F + + F + K +RK+L L E++K L
Sbjct: 166 SAIVKIKPNKGKYH--IENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKIL 223
Query: 356 GD 357
D
Sbjct: 224 ED 225
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
Q ++++ ++ +A + + D+VLEIG G G LT L V IE D+ +
Sbjct: 2 AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYA 61
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
+ + ++++ D +K + + F KVVAN+P+ IS+ + +L+
Sbjct: 62 NKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIK 109
Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
G F VL+ Q E A R+V T +Y +++ V ++ E KVP + F+P+PKV
Sbjct: 110 RG--FDLAVLMYQYEFAKRMVAKE-GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKV 166
Query: 300 DAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL-----EIEKA 354
+A+V K + + + + F + + F + K +RK+L L E++K
Sbjct: 167 YSAIVKIKPNKGKYH--IENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKI 224
Query: 355 LGD 357
L D
Sbjct: 225 LED 227
>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
Length = 244
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 29/252 (11%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
D++ + E D + EIG G G T L+ V AIE D + + D +
Sbjct: 20 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQ 79
Query: 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
VL +D ++ F+ K+ S K+ NIP+NISTD+I++++ I E+ L+
Sbjct: 80 VLNKDILQ----------FKFPKNQS--YKIFGNIPYNISTDIIRKIV-FDSIADEIYLI 126
Query: 251 LQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQ 310
++ A RL+ R + +F+ + VPR F P+PKV+++++ K+
Sbjct: 127 VEYGFAKRLLNTK------RSLALFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKK 180
Query: 311 ATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKALGDVGLPATAAADYKF 370
+ ++F M K + K + + T + +L G+ ++
Sbjct: 181 SRISHKDKQKYNYFVM---------KWVNKEYKKIFTKNQFNNSLKHAGIDDLNNISFEQ 231
Query: 371 PITLPSTEYTLF 382
++L ++ Y LF
Sbjct: 232 FLSLFNS-YKLF 242
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
Q+++ + ++ +Q+ ++E D V EIG G G LT L V +IE D H+ L
Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLS 67
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
E+ ++ ++ +D ++ F ++ K+V NIP+++ST +IK+++
Sbjct: 68 SEKLKLNTRVTLIHQDILQFQ--------FPNKQR----YKIVGNIPYHLSTQIIKKVV- 114
Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV 299
S++ L+++E R ++ +R + + ++ + K+P F P+PKV
Sbjct: 115 FESRASDIYLIVEEGFYKRTLDI------HRTLGLLLHTQVSIQQLLKLPAECFHPKPKV 168
Query: 300 DAAVVTFKLKQATDYP 315
++ ++ + TD P
Sbjct: 169 NSVLIKLT-RHTTDVP 183
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201
VLE G GTG+LTN LL AG TV IE + M + +E+ + + + DF+ +
Sbjct: 49 VLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPK--EFSITEGDFLSFEV 103
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 128 EINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
E+ Q+A A A E + LE+G GTG + L+ G +A++ D + + R++
Sbjct: 21 EVAGQIATAXASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAXLEVFRQK 80
Query: 183 FASID-QLKVLQED 195
A +D +++V+Q D
Sbjct: 81 IAGVDRKVQVVQAD 94
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183
Q G+ +L++G GTG LT + +GA VL + + R+ +
Sbjct: 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATXIEKARQNY 99
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQL-KVLQEDFVKCH 200
G VL++G G G+LT L GA V+ +E D AS+ L K L+ + +K
Sbjct: 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDD----------LASVLSLQKGLEANALKAQ 283
Query: 201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E + F +V N PF++ VI
Sbjct: 284 ALHSDVD--EALTEEARFDIIVTNPPFHVGGAVI 315
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQL-KVLQEDFVKCH 200
G VL++G G G+LT L GA V+ +E D AS+ L K L+ + +K
Sbjct: 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDD----------LASVLSLQKGLEANALKAQ 283
Query: 201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E + F +V N PF++ VI
Sbjct: 284 ALHSDVD--EALTEEARFDIIVTNPPFHVGGAVI 315
>pdb|3H2B|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
pdb|3H2B|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
Length = 203
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186
++L++G GTG T L + G + +E +V L R+ S+
Sbjct: 44 VILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSV 86
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 135 AAAAVQEGDI-----VLEIGPGTGSLTNVLLNA 162
AA V EGDI VLE G G+G+LT LL A
Sbjct: 88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRA 120
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+ A A + GD ++E G G+G+LT L N
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLAN 113
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+ A A + GD ++E G G+G+LT L N
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLAN 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,623,859
Number of Sequences: 62578
Number of extensions: 403877
Number of successful extensions: 1201
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 26
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)