BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015990
(397 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia
amoebophila (strain UWE25) GN=rsmA PE=3 SV=2
Length = 284
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 149/256 (58%), Gaps = 16/256 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G FP+K L Q+++++ I ++ A+ VQ G++VLEIGPG GSLT +L A V+
Sbjct: 13 LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72
Query: 168 AIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
A+EKD L RE RF + QL++ ED + + + S R AKV+AN
Sbjct: 73 AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPE 283
+P++++T ++ +++ +FS + +++QEE A R+ P S+Y IF+NFYS+P
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYSKPR 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
Y F V R F+P PKVD+A+V +LK+ P + FF + +AF +RKMLR SL+
Sbjct: 184 YGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAFEQRRKMLRASLK 240
Query: 344 HLCTSLEIEKALGDVG 359
L +I AL +G
Sbjct: 241 SLFDPSKISNALEIIG 256
>sp|Q67JB9|RSMA_SYMTH Ribosomal RNA small subunit methyltransferase A OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=rsmA PE=3 SV=1
Length = 285
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 147/253 (58%), Gaps = 13/253 (5%)
Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+KAL ++ G P+ LGQ+++++ + D + +AA ++ D+VLEIGPG G+LT L
Sbjct: 7 GALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAA 66
Query: 162 AGATVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+ +E D+ +V ++ + + D ++V+ D + + L R + AK
Sbjct: 67 KAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLH----KLLGERLAPGQKAK 122
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
VVAN+P+ I+T ++ +LL S VV+++Q+E A R+V P + Y +++ V +Y+
Sbjct: 123 VVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYT 181
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
EP +V R +F PQP+VD+AVV+ + ++ P ++FF +V +AF G+R RK
Sbjct: 182 EPRIVLRVSRASFMPQPEVDSAVVSLRYRERP--PVDAPPEAFFRVVRAAF-GQR---RK 235
Query: 341 SLQHLCTSLEIEK 353
SL + TSL +EK
Sbjct: 236 SLVNALTSLGVEK 248
>sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransferase A OS=Moorella
thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1
Length = 288
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 138/259 (53%), Gaps = 5/259 (1%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ + KG PRKS GQ++++++ I ++A AA V GD V+EIGPG G+LT L
Sbjct: 10 TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+AIE D+ + + E A D ++++ D +K + + + KVVA
Sbjct: 70 GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T ++ LL +E+VL++Q E R L P +Y +++ V +Y+EP
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYTEP 187
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
KVPRT F+P+P+VD+ V+ + V FF +V +AFN +RK + +L
Sbjct: 188 AVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAFNQRRKTILNAL 246
Query: 343 QHLC-TSLEIEKALGDVGL 360
L +I +AL G+
Sbjct: 247 GSLGFEKSKIMEALAGAGI 265
>sp|A8MK56|RSMA_ALKOO Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus
oremlandii (strain OhILAs) GN=rsmA PE=3 SV=1
Length = 287
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 145/268 (54%), Gaps = 13/268 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I D + A V EGD ++E+GPG GSLT + +VLA+E D+ ++
Sbjct: 23 KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++V+ ED +K + + F R KV+AN+P+ ++T +I +
Sbjct: 83 PILKETLGAYPNVEVINEDVLKLDLHKLIEEKFPGRN-----VKVIANLPYYVTTPIIMK 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L + +++Q+E A R+ + T +Y ++I V +YS P+ KVP + F PQ
Sbjct: 138 FLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYSNPKILLKVPPSVFIPQ 196
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
PKV++ V+ + D P V+ + FFS+V AF +RK L +L L++EK+
Sbjct: 197 PKVESTVIRLDI---LDTPKVSVEREDLFFSLVKDAFGKRRKTLLNALS--TGDLKLEKS 251
Query: 355 LGDVGLPATAAADYKFPITLPSTEYTLF 382
L L A+ + + TL EY +
Sbjct: 252 LLREVLAASNIDENRRGETLTIEEYGVL 279
>sp|Q9Z6K0|RSMA_CHLPN Ribosomal RNA small subunit methyltransferase A OS=Chlamydia
pneumoniae GN=rsmA PE=3 SV=1
Length = 277
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 144/248 (58%), Gaps = 16/248 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I ++ A + V D VLEIGPG G+LT L+ AGA V+AIEKD
Sbjct: 20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
S+++L + E C L ++ + G +VVAN+P++I+T ++
Sbjct: 80 FA-------PSLEELPIRLEIIDACKYPLDQLQEYK----TLGKGRVVANLPYHITTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L D + V +++Q+E A R+V +P R +Y + IF+ F+++ Y FKV +
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGR--DYGSLTIFLQFFADIHYAFKVSASC 186
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352
F+P+P+V +AV+ K+K+ + FF++ +AF +RK+L +L+ L ++E
Sbjct: 187 FYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAFQQRRKVLANTLKGLYPKEQVE 245
Query: 353 KALGDVGL 360
+AL ++GL
Sbjct: 246 QALKELGL 253
>sp|Q65PH9|RSMA_BACLD Ribosomal RNA small subunit methyltransferase A OS=Bacillus
licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3
SV=1
Length = 292
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 145/262 (55%), Gaps = 17/262 (6%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + LN G +KSLGQ++++++ I D++ A V E V+EIGPG G+LT L
Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A E DQ ++ ++ + + D + V+ +D +K +R+ M F+ VVA
Sbjct: 71 KKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+E
Sbjct: 127 NLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEA 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRKMLRK 340
+ VP+T F PQP VD+AV+ L++ PAV + FF +V ++F +RK L
Sbjct: 185 KTVMNVPKTVFVPQPNVDSAVIRLTLRKE---PAVAVQDAAFFFQVVKASFAQRRKTLFN 241
Query: 341 SL-QHLCTSLE----IEKALGD 357
+L +L E IE+AL D
Sbjct: 242 NLVNNLPNGKENKSKIERALQD 263
>sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix
orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3
SV=1
Length = 301
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 135/239 (56%), Gaps = 7/239 (2%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ I D++ A + DIV+EIGPG GSLT ++ V A EKD+ +V
Sbjct: 24 KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++RE F + L+V+ +D ++ + F+ R S KV+AN+P+ I+T VI
Sbjct: 84 KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMG 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
LL FS +VL++Q+E A R+ + + +Y +++ V +Y E E KVP T F P+
Sbjct: 140 LLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYYGEVEIFHKVPPTVFIPR 198
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
P+V ++++ K Y V + FF MV + F +RK L+ SL + ++++K +
Sbjct: 199 PRVYSSIIKIKPHSEPVY-RVKNEGFFFKMVRAIFQQRRKTLKNSLTK-SSEIKLDKGI 255
>sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
caviae (strain GPIC) GN=rsmA PE=3 SV=1
Length = 278
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 139/238 (58%), Gaps = 19/238 (7%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+GR P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+E
Sbjct: 17 QGR-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALE 75
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
KD + LK L D + LS E K G +VVAN+P++I+
Sbjct: 76 KDPMFE----------ETLKQLPIDLEITDACKYPLSQLE-EKGWQGKGRVVANLPYHIT 124
Query: 231 TDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
T ++ +L L + + + V +++Q+E A R+ +P + EY + IF+ F+++ Y FKV
Sbjct: 125 TPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKV 182
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHL 345
FFP+P+V +AVV +K+ +P TS + FFS+ +AF +RK+L +L+ L
Sbjct: 183 SPGCFFPKPQVSSAVVHMTVKET--FPLETSLHQKFFSLTRAAFGQRRKLLANALKDL 238
>sp|A0LA32|RSMA_MAGSM Ribosomal RNA small subunit methyltransferase A OS=Magnetococcus
sp. (strain MC-1) GN=rsmA PE=3 SV=1
Length = 279
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 11/240 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G P K GQ+++++ + ++ A A ++ GD VLEIGPG GSLT LL V
Sbjct: 11 LEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQKAGAVT 70
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+EKD+ ++ L+R A + L +++ED + ++ + G K+ AN+P+
Sbjct: 71 AVEKDRKLLPLLRVEAAGVGALTLVEEDAL-------LVDYTALAQQLGGPLKLAANLPY 123
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
NIST ++ LL F + L+ Q+E A RL EP + Y + + ++E + F
Sbjct: 124 NISTPLMVHLLDHHAAFECMALMFQKEVAQRLAAEPG--SKAYGALTVQCALWAEIRHGF 181
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
VP F P PKV +AVV ++ + AV + F +V +AF +RK LR +L+ +C
Sbjct: 182 DVPPAAFLPAPKVTSAVVHVQMMRQPRV-AVEDERHFVRVVKAAFAQRRKTLRNTLKTIC 240
>sp|Q181C1|RSMA_CLOD6 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
difficile (strain 630) GN=rsmA PE=3 SV=1
Length = 289
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 138/246 (56%), Gaps = 10/246 (4%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLR 339
+ E K PR F PQP VD+ V+ ++ Y V + FF V ++F +RK L
Sbjct: 180 CDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEDIFFKTVKASFGQRRKTLL 238
Query: 340 KSLQHL 345
SL L
Sbjct: 239 NSLGGL 244
>sp|Q8YS62|RSMA_NOSS1 Ribosomal RNA small subunit methyltransferase A OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rsmA PE=3 SV=1
Length = 271
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 142/258 (55%), Gaps = 12/258 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA D +LEIGPGTG LT LL A +++A+E D+
Sbjct: 4 PRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPAVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++ S + +K + KVVANIP+NI+ +I
Sbjct: 64 LCELLAKQLGKKENFLLLQGDFLTIDLAANLGSFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + F +VLL+Q+E A RL S + + +++ V + ++ E+ VP
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLIQKEVAERLYAKS-GSRTFGALSVRVQYLADCEFICDVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
+ F P PKVD+AVV + +Q + P V K ++V F KRKMLR +LQ +
Sbjct: 179 ASAFHPPPKVDSAVVRLRPRQ-IEIP-VNDPKRLENLVKLGFGAKRKMLRNNLQSVVDRD 236
Query: 350 EIEKALGDVGLPATAAAD 367
+ + L + + A A+
Sbjct: 237 RLSQLLEQLNINPQARAE 254
>sp|Q253R6|RSMA_CHLFF Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
felis (strain Fe/C-56) GN=rsmA PE=3 SV=1
Length = 284
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 18/234 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 26 PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 84
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C L + K G +VVAN+P++I+T ++
Sbjct: 85 ---MFEE---TLKQLPIDLEITDACKYPLSQL----QEKGWQGKGRVVANLPYHITTPLL 134
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L + + + + +++Q+E A R+ +P EY + IF+ F+++ Y FKV
Sbjct: 135 TKLFLEVPNQWKTITVMMQDEVARRITAQPG--GKEYGSLTIFLQFFADVRYAFKVSSGC 192
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSMVSSAFNGKRKMLRKSLQHL 345
FFP+P+V +AVV +K +P S K FFS+ +AF +RK+L +L++L
Sbjct: 193 FFPKPQVSSAVVHMTVKDT--FPLEESLHKKFFSLTRAAFGQRRKLLANALKNL 244
>sp|A1WVT7|RSMA_HALHL Ribosomal RNA small subunit methyltransferase A OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=rsmA PE=3 SV=1
Length = 265
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 14/246 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+++ + + ++ A A +EG+ +LEIGPG G+LT LL T+ A+E D+
Sbjct: 5 PRKRFGQNFLRDPAVIQRMVTAIAPREGETLLEIGPGEGALTEPLLARLGTLTAVELDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ERFA L+V++ D + + G +VV N+P+N+ST ++
Sbjct: 65 LAPRLQERFAP--ALRVIEGDALALDPAEL--------APAQGRLRVVGNLPYNVSTPIL 114
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL D+ ++ LLLQ E R+V P + R +++ V + E F VP FF
Sbjct: 115 FHLLAAADVIEDLHLLLQREVVDRMVAPPGGKTRGR-LSVMVQYRCRVERCFNVPAGAFF 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFF-SMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353
P PKV ++ V +L PA +++ +V++AF G+RK LR SL+ L T+ E
Sbjct: 174 PAPKVMSSFV--RLVPHRPLPARAQDEAWLQEVVTAAFGGRRKTLRNSLKGLVTAQAFEA 231
Query: 354 ALGDVG 359
A D G
Sbjct: 232 AGVDPG 237
>sp|C1CMT3|RSMA_STRZP Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain P1031) GN=rsmA PE=3 SV=1
Length = 290
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPVPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|Q8DND3|RSMA_STRR6 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1
Length = 290
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|Q04II4|RSMA_STRP2 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA
PE=3 SV=1
Length = 290
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|Q5L6H5|RSMA_CHLAB Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
abortus (strain S26/3) GN=rsmA PE=3 SV=1
Length = 278
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 147/270 (54%), Gaps = 22/270 (8%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
GR P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EK
Sbjct: 18 GR-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEK 76
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D ++ E ++ QL + E C L + + G +VVAN+P++I+T
Sbjct: 77 D----SMLEE---TLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITT 125
Query: 232 DVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++++L L + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 126 PLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVS 183
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P+P+V +AVV +K+ TK FFS+ +AF +RK+L +L+ L
Sbjct: 184 PGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSLTRAAFGQRRKLLANALKDLYPKE 242
Query: 350 EIEKALGDVGLPATAAADYKFPITLPSTEY 379
+ +AL + +D P TL +Y
Sbjct: 243 RVFEALSQLHF-----SDKTRPETLSLDDY 267
>sp|B2J0A6|RSMA_NOSP7 Ribosomal RNA small subunit methyltransferase A OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102) GN=rsmA PE=3
SV=1
Length = 286
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 136/241 (56%), Gaps = 20/241 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNAGATVLA 168
PRK QH++ + + D + AA E GD +LEIGPGTG LT LL +++A
Sbjct: 4 PRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPLVQSLIA 63
Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+E D+ + L+ ++ + +LQ DF+ + S++++ +K + KVVANIP+N
Sbjct: 64 VEIDRDLCQLLSKQLGKTENFLLLQGDFLTLDLPSYLVAFPNFQKPN----KVVANIPYN 119
Query: 229 ISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
I+ +I++LL P + F +VLL+Q+E A RL +P +T + +++ V + +E
Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERLYAKPGSKT--FGALSVRVQYLAEC 177
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
E VP + F P PKVD+AVV + ++ + PA+ + + + + F KRKMLR +L
Sbjct: 178 ELICTVPASAFHPAPKVDSAVVRLRPRK-IEIPAL-NPRQLETFLKLGFGAKRKMLRNNL 235
Query: 343 Q 343
Q
Sbjct: 236 Q 236
>sp|Q3M3F3|RSMA_ANAVT Ribosomal RNA small subunit methyltransferase A OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=rsmA PE=3
SV=1
Length = 271
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 12/258 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ + + D + AA D +LEIGPGTG LT LL +LA+E D+
Sbjct: 4 PRRVFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPLVEALLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++L+ + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGQKENFLLLQGDFLTLDLVANLLTFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + F +VLL+Q+E A RL + + + +++ V + ++ E+ VP
Sbjct: 120 EKLLGTIANPNPEPFDSIVLLIQKEVAERLYAKA-GSRTFGALSVRVQYLADCEFICDVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSL 349
F P PKVD+AVV + +Q PA K ++V F KRKMLR +LQ +
Sbjct: 179 AGAFHPPPKVDSAVVRLRPRQ-IQIPA-RDPKRLENLVKLGFGAKRKMLRNNLQSVVDRD 236
Query: 350 EIEKALGDVGLPATAAAD 367
+ + L + + A A+
Sbjct: 237 RLSQLLEQLNINPQARAE 254
>sp|C1CA29|RSMA_STRP7 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain 70585) GN=rsmA PE=3 SV=1
Length = 290
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|B1I8T7|RSMA_STRPI Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain Hungary19A-6) GN=rsmA PE=3 SV=1
Length = 290
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|B5E2H6|RSMA_STRP4 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 19F (strain G54) GN=rsmA PE=3 SV=1
Length = 290
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|C1CTN9|RSMA_STRZT Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain Taiwan19F-14) GN=rsmA PE=3 SV=1
Length = 290
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|Q97NN5|RSMA_STRPN Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=rsmA PE=3 SV=2
Length = 290
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|B8ZNY9|RSMA_STRPJ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rsmA
PE=3 SV=1
Length = 290
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|B2IM67|RSMA_STRPS Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain CGSP14) GN=rsmA PE=3 SV=1
Length = 290
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 136/267 (50%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMTFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|Q9PK40|RSMA_CHLMU Ribosomal RNA small subunit methyltransferase A OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=rsmA PE=3 SV=1
Length = 277
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 152/270 (56%), Gaps = 21/270 (7%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + +K++N + + K+L Q+++++ I ++ A A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLKSVNGRAK---KALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VL++ GA V+A+EKD S+ QL + E C + + SL + K
Sbjct: 59 ALSEVLVSQGANVIALEKDPMFE-------ESLSQLPIDIEITDAC--KYPLASLDD--K 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + + V +++Q+E A R+ P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPNRWKTVTVMIQDEVARRITANPG--DKDYSS 165
Query: 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTS-TKSFFSMVSSA 330
+ +F+ F+++ +Y FKV F+P+P V +AVV ++ + D+P S FF++ +A
Sbjct: 166 LTVFLRFFADVQYAFKVSPNCFYPKPSVSSAVVHMRVHE--DFPLSGSEIDEFFALTRAA 223
Query: 331 FNGKRKMLRKSLQHLCTSLEIEKALGDVGL 360
F +RK+L SL++L ++ + L +G
Sbjct: 224 FGQRRKLLANSLKNLYPKDKVFQVLEHLGF 253
>sp|A6TJK9|RSMA_ALKMQ Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus
metalliredigens (strain QYMF) GN=rsmA PE=3 SV=1
Length = 287
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 132/242 (54%), Gaps = 16/242 (6%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
KA+ K +F KSLGQ+++++ I + + A +Q D V+EIGPG G+LT +
Sbjct: 11 KAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGTLTQFIAEKAH 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+AIE D++++ +++ A ++V+ +D +K + + FE + KV+AN
Sbjct: 71 KVVAIEIDRNLIPILKHTLADYQNVEVINQDVLKVDLHQLIADKFEGKP-----VKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
+P+ ++T ++ + L +V+++Q+E A+R+ + T +Y ++I V +Y PE
Sbjct: 126 LPYYVTTPIVMRFLEEKVPVDSLVIMIQKEVAVRM-QAGPGTKDYGALSIAVQYYCNPEI 184
Query: 285 KFKVPRTNFFPQPKVDAAVVTFKLKQATDYP----AVTSTKSFFSMVSSAFNGKRKMLRK 340
KVP + F PQPKV++ V+ ++ YP V F++V AF +RK L
Sbjct: 185 LLKVPPSVFIPQPKVESIVIKLQV-----YPEPKVKVERDDLMFALVKDAFGKRRKTLLN 239
Query: 341 SL 342
+L
Sbjct: 240 AL 241
>sp|B1WRJ7|RSMA_CYAA5 Ribosomal RNA small subunit methyltransferase A OS=Cyanothece sp.
(strain ATCC 51142) GN=rsmA PE=3 SV=1
Length = 270
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 139/252 (55%), Gaps = 14/252 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +Q+ AA +++ D +LEIGPGTG LT LL +++A+E D
Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPLVQSLIAVELDWD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + D +LQ D +K I + ++ KVVANIP+NI++ ++
Sbjct: 64 LCKKLVKSLGDEDNFLLLQGDILKLDIATEA----QQFPKFLPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKV 288
+LL P + +VLL+Q+E A R++ P + Y ++I + + ++ Y V
Sbjct: 120 DKLLGRISSPKQPSYDLIVLLIQKEVAQRIIAYPG--SKNYGALSIKMQYLADCNYICDV 177
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
P+ +F+P PKVD+AV+TF+ + + + T+ K ++++ F+ +RKMLR +LQ L
Sbjct: 178 PKKSFYPPPKVDSAVITFRPRSLLN--SATNPKYLETLINLGFSSRRKMLRNNLQSLIDR 235
Query: 349 LEIEKALGDVGL 360
+ + L ++ L
Sbjct: 236 DLLTEFLTEIDL 247
>sp|C1CGR5|RSMA_STRZJ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain JJA) GN=rsmA PE=3 SV=1
Length = 290
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLMPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ +++ AV FF + ++F +RK L
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKM-VRRPEPAVAVEDENFFFKVSKASFTHRRKTL 237
Query: 339 RKSLQHLCTSLE-----IEKALGDVGL 360
+L E + KAL GL
Sbjct: 238 WNNLTGYFGKTEEVKDKLTKALDQAGL 264
>sp|Q9CHN8|RSMA_LACLA Ribosomal RNA small subunit methyltransferase A OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=rsmA PE=3 SV=1
Length = 294
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 133/251 (52%), Gaps = 9/251 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITQTAELSKEVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ D +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSADILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ FSE V+++Q+E A R + S +T Y ++I V +Y E F VPRT F P
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADR-IAASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIE 352
P VD+A++ ++A V + FF + S+F +RK L +LQ + EIE
Sbjct: 202 APNVDSAILKMVRREAP-LVEVEDEEWFFKTMHSSFVHRRKTLMNNLQAAFGKESKPEIE 260
Query: 353 KALGDVGLPAT 363
K L + T
Sbjct: 261 KLLAQAEISPT 271
>sp|B1XIV9|RSMA_SYNP2 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rsmA PE=3
SV=1
Length = 273
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 140/262 (53%), Gaps = 20/262 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + +I D++ AAA +Q D VLEIGPG G+LT+ LL +L++E D+
Sbjct: 3 PRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQVEALLSVEIDRD 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + + +L+ D+++ I + L F + ++ KVVANIP+NI+ ++
Sbjct: 63 LCKYMVKNYGDRPNFLLLEADYLQTDI-NEFLGDFPQFQNPR---KVVANIPYNITGPIL 118
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
++LL P + F +VLL+Q+E RLV P T + + + V + ++ E V
Sbjct: 119 EKLLGTIDRPNSNPFESIVLLIQKEVGDRLVAHPC--TKAFGALTLRVQYLADCETVCVV 176
Query: 289 PRTNFFPQPKVDAAVVTFK---LKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
P F+P+PKV++ VV + L Q P + +T ++ F KRKMLR +L+ L
Sbjct: 177 PPKAFYPKPKVESVVVRLRPRPLAQPAQNPKLLAT-----LIKVGFASKRKMLRNNLKSL 231
Query: 346 CTSLEIEKALGDVGLPATAAAD 367
++ D+ + A +
Sbjct: 232 YNPEILDPIFADLDISPQARGE 253
>sp|P37468|RSMA_BACSU Ribosomal RNA small subunit methyltransferase A OS=Bacillus
subtilis (strain 168) GN=rsmA PE=3 SV=1
Length = 292
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 129/224 (57%), Gaps = 12/224 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + + + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYENVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKS--FFSMVSSAFNGKRK 336
PQP VD+AV+ L+ D PAV FF ++ ++F +RK
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENESFFFQLIKASFAQRRK 237
>sp|A8AUQ4|RSMA_STRGC Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
gordonii (strain Challis / ATCC 35105 / CH1 / DL1 /
V288) GN=rsmA PE=3 SV=1
Length = 290
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 13/274 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRK 336
Y + F VPRT F P P VD+A++ ++ PAV K FF + ++F +RK
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAILKMVRREQ---PAVEVQDEKFFFKVTKASFVHRRK 235
Query: 337 MLRKSL-QHLCTSLEIEKALGDVGLPATAAADYK 369
L +L + S E+++ L + A A+ +
Sbjct: 236 TLWNNLTSYFGKSEEVKEKLENALAKANLVANVR 269
>sp|Q03T56|RSMA_LACBA Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
brevis (strain ATCC 367 / JCM 1170) GN=rsmA PE=3 SV=1
Length = 296
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 132/243 (54%), Gaps = 9/243 (3%)
Query: 103 ATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A KA+ ++ R +KSLGQ+++ + I + AA V + D V+EIGPG G+LT +
Sbjct: 12 ARTKAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGPGIGALTEQIAK 71
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A E D++++ ++ E +K++ ED +K ++ + + FE + K+
Sbjct: 72 RAHKVVAFEIDENLLPVLDETLMDYKNVKIINEDILKANLPAVVADEFEADRP----LKL 127
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T ++ +L F +V+++Q E A RLV EP T Y +++ + + +
Sbjct: 128 VANLPYYITTPILMGVLQSTVRFEAIVVMMQAEVAERLVAEPG--TKAYGSLSVIMQYRA 185
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRK 340
E F VPRT F PQP VD+A++ ++A K+ FS V F +RK L
Sbjct: 186 HVEIAFNVPRTAFIPQPNVDSAIIRLTPREALPVNPYED-KALFSFVKGCFAHRRKSLWN 244
Query: 341 SLQ 343
+LQ
Sbjct: 245 NLQ 247
>sp|Q1WV73|RSMA_LACS1 Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
salivarius (strain UCC118) GN=rsmA PE=3 SV=1
Length = 296
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 26 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K +++ + FE K+VAN+P+ I+T ++
Sbjct: 86 LPVLADTLSPYENVEVVHQDILKADLKALIAEHFE----PGHKLKLVANLPYYITTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G F +V+++Q+E A RL P T Y +++ V + + E F VP+T F
Sbjct: 142 HLLDSGIEFETIVVMMQKEVAERLAANPG--TKAYGSLSVAVQYEMDSEIAFIVPKTVFV 199
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ K+ K F +V +F +RK L +LQ L
Sbjct: 200 PQPNVDSAIIVLNKKKVKPKEP-QDEKHFKKLVKGSFMHRRKSLWNNLQSL 249
>sp|B1N079|RSMA_LEUCK Ribosomal RNA small subunit methyltransferase A OS=Leuconostoc
citreum (strain KM20) GN=rsmA PE=3 SV=1
Length = 295
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 12/265 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + A + D V+EIGPG G+LT L + V+
Sbjct: 17 LNQYGLHAKKKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQLARSAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D HMV ++ E D +KV++ D +K ++ + + F K+VAN+P+
Sbjct: 77 AFEIDPHMVAVLAETLLPYDNVKVIENDILKVNLAHVIATEF----GEGAHVKIVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL + T Y + + + +Y++ + K
Sbjct: 133 YITTPILMQLLRAKISWDNIVVMMQREVADRL-NAEIGTKAYGVLTLTIQYYAQAQLAIK 191
Query: 288 VPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCT 347
VP + F P P VD+AVV L V + FS+V +F +RK L ++ +
Sbjct: 192 VPASAFNPSPNVDSAVVM--LTPIVPETVVDNPDKLFSVVKGSFAHRRKSLWNNMLQMFG 249
Query: 348 SLE-----IEKALGDVGLPATAAAD 367
E I+ AL V + ++ A+
Sbjct: 250 KQEDVKQRIQDALDSVNIASSIRAE 274
>sp|Q38V22|RSMA_LACSS Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
sakei subsp. sakei (strain 23K) GN=rsmA PE=3 SV=1
Length = 297
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 133/243 (54%), Gaps = 10/243 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T K L G +KSLGQ+++ N I Q+ A + + D V+EIGPG GSLT +
Sbjct: 10 TKKILKRYGFKFKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGSLTEQIARKA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
VL+ E D ++ ++++ + VL +D ++ + + + F+ + + K+VA
Sbjct: 70 HQVLSFEIDDRLIPVLKDTLNHYHNVTVLNQDILEADLPTLIAKHFDGQHN----LKIVA 125
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T ++ LL G +VL++Q+E A R ++ + + Y ++I V +SE +
Sbjct: 126 NLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAER-IDAAPGSKAYGSLSIAVQLHSEVK 184
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKS 341
F VP+T F PQP VD+A+V F +Q P VT + + F +V AF +RK L +
Sbjct: 185 LAFIVPKTAFVPQPNVDSAIVEFVGRQE---PLVTVQNQQLFDQLVRGAFAQRRKTLWNN 241
Query: 342 LQH 344
LQ+
Sbjct: 242 LQN 244
>sp|A8F909|RSMA_BACP2 Ribosomal RNA small subunit methyltransferase A OS=Bacillus pumilus
(strain SAFR-032) GN=rsmA PE=3 SV=1
Length = 292
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 131/232 (56%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K + + E + VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVG----KVIEENFADCKEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ PS + EY ++I V +Y+E + VP+T F
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAIPS--SKEYNSLSIAVQYYTEAKTVMVVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+AV+ +++ PAV+ + + FF ++ ++F +RK L +L +
Sbjct: 197 PQPNVDSAVIKLTVRET---PAVSVENDEFFFQLIRASFGQRRKTLMNNLMN 245
>sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=rsmA PE=3 SV=1
Length = 278
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 108 LNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
L SK G PR+ LGQH+M++ I + + AA V+E DIVLEIGPG G LT L+ V
Sbjct: 10 LRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQV 69
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D MV +++ L++++ DF++ + KVVANIP
Sbjct: 70 IAVELDGRMVEILKRELGEAPNLEIVRADFLEYDV-------------PDDVNKVVANIP 116
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYK 285
+NIS+ + +LL + VL Q E A R+V EP + +Y + + VN ++ E
Sbjct: 117 YNISSPITFKLLELD--IDVAVLTYQREFAERMVAEPG--SKKYSRLTVMVNLLADVELL 172
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSL 342
VPR F P P+V ++VV K + P V + S+ + F K K +R +L
Sbjct: 173 RGVPRRAFIPPPRVGSSVVRLTPKSEEERPDV-DPDTLESVCRALFQHKNKTVRNAL 228
>sp|B0CC89|RSMA_ACAM1 Ribosomal RNA small subunit methyltransferase A OS=Acaryochloris
marina (strain MBIC 11017) GN=rsmA PE=3 SV=1
Length = 269
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 135/260 (51%), Gaps = 20/260 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + Q+ AAA +Q D +LEIGPG G LT LL +V+++E D+
Sbjct: 4 PRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQAQSVVSVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R F + +L+ DF+ + + + KVVANIP+NI++ ++
Sbjct: 64 LCKSLRHTFNDQENFTLLELDFLNLDVAAELTEPLPN--------KVVANIPYNITSPIL 115
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
+LL P ++ VVLL+Q+E A RLV EP + + +++ + ++ E V
Sbjct: 116 SKLLGRIDAPAQPVYETVVLLIQKEVADRLVAEPGSKI--FNGLSVRSQYLADCELICPV 173
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFS-MVSSAFNGKRKMLRKSLQHLCT 347
P + F P PKV++AVV + YP + S ++ F+ +RKMLR +L+ L
Sbjct: 174 PASAFKPAPKVESAVVRLTPR---PYPQPVQNPQWLSTLLKVGFSSRRKMLRNNLKSLVD 230
Query: 348 SLEIEKALGDVGLPATAAAD 367
++ + L + + A A+
Sbjct: 231 RDQLSECLNTLNISLQARAE 250
>sp|Q837A7|RSMA_ENTFA Ribosomal RNA small subunit methyltransferase A OS=Enterococcus
faecalis (strain ATCC 700802 / V583) GN=rsmA PE=3 SV=1
Length = 295
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I ++ A + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQLAMNAAQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K + +F+ + KVVAN+P+ I+T ++
Sbjct: 85 IPVLADTLSRYDNVTVVHQDVLKADLVETTNQVFQEKYP----IKVVANLPYYITTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
L +E+V+++Q+E A R+ +P T Y ++I V ++ E F VP+T F
Sbjct: 141 HFLESSLDVAEMVVMMQKEVADRIAAKPG--TKAYGSLSIAVQYFMEASVAFIVPKTVFV 198
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL 345
PQP VD+A++ ++AT VT+ K FF + ++F +RK L +L H
Sbjct: 199 PQPNVDSAIIKLT-RRATPAVTVTNEKEFFKLTKASFQLRRKTLWNNLTHF 248
>sp|P59157|RSMA_THEEB Ribosomal RNA small subunit methyltransferase A
OS=Thermosynechococcus elongatus (strain BP-1) GN=rsmA
PE=3 SV=1
Length = 265
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 138/257 (53%), Gaps = 21/257 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I Q+ AAA + GD VLEIGPG G+LT LL +GA V+A+E D+ +
Sbjct: 5 RKRFGQHWLRSEAILAQIIAAAELHPGDRVLEIGPGRGALTRPLLVSGAEVVAVELDRDL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
G +R +F S ++ ++++ D ++ + + G KVVANIP+NI+ ++
Sbjct: 65 CGQLRRQFDS-ERFQLIEGDILRLDL------------APLGCNKVVANIPYNITGPLLG 111
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPR 290
LL P F ++LL+Q+E RL+ S + Y +++ V F + E VP
Sbjct: 112 HLLGSIARPRRPAFERLILLVQKEIGDRLMA-SPGSKAYGALSVRVQFLATCEKVCAVPP 170
Query: 291 TNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE 350
F P PKVD+ VV L+ P V S + +++ F +RKML +L+ L +
Sbjct: 171 RAFQPPPKVDSVVVC--LRPHRTLPRVGSPQWLETLLKQGFATRRKMLANALKSLVEPEQ 228
Query: 351 IEKALGDVGLPATAAAD 367
+ +AL +G A + A+
Sbjct: 229 VRQALLQLGRDANSRAE 245
>sp|Q8R6B1|RSMA_FUSNN Ribosomal RNA small subunit methyltransferase A OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=rsmA PE=3 SV=1
Length = 264
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 136/254 (53%), Gaps = 14/254 (5%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ N EI +++ + + + D +LEIGPG G+LT++L+ + +E D+
Sbjct: 6 KKKYGQNFLNNKDEILNKIIEVSNIDDNDEILEIGPGQGALTSLLVERVKKITCVEIDKD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R++F+S + ++ ED ++ +R ++ + G KVVANIP+ I++ +I
Sbjct: 66 LENTLRKKFSSKENYTLVMEDVLEVDLRRYI---------NQG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+++ D+ E +++Q+E R+ S E + + V +Y E EY F +PR F
Sbjct: 116 NKIIENKDLIDEAYIMVQKEVGERICAKS--GKERGILTLAVEYYGESEYLFTIPREFFN 173
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLE-IEK 353
P P VD+A ++ K + Y S FF V +AF+ KRK + +L L S + I++
Sbjct: 174 PIPNVDSAFISIKFYKDDRYKNKISEDLFFKYVKAAFSNKRKNIVNNLVTLGYSKDKIKE 233
Query: 354 ALGDVGLPATAAAD 367
L + + A+
Sbjct: 234 ILNQIEISENERAE 247
>sp|Q74LI0|RSMA_LACJO Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rsmA
PE=3 SV=1
Length = 296
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 132/253 (52%), Gaps = 15/253 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKV 288
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V +V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAVQSRMNVRLAEEV 199
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTS 348
T+F P+PKVD+AVV L + P + F +V F +RK L +L+ L
Sbjct: 200 KSTSFMPRPKVDSAVVV--LTPLLEKPDINDYAFFDHVVKMCFAQRRKTLANNLKTLIKD 257
Query: 349 L-EIEKALGDVGL 360
E EK + D+GL
Sbjct: 258 KDEREKLINDLGL 270
>sp|Q03IR2|RSMA_STRTD Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=rsmA PE=3
SV=1
Length = 290
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + ++F +RK L
Sbjct: 179 YMTTKVAFAVPRTVFVPAPNVDSAILKMT-RRKQPLVEVKDEDFFFRVSKASFLHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKNKL 255
>sp|Q5LY12|RSMA_STRT1 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=rsmA PE=3 SV=1
Length = 290
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + ++F +RK L
Sbjct: 179 YMTAKVAFAVPRTVFVPAPNVDSAILKMT-RRKQPLVEVKDEDFFFRVSKASFLHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKNKL 255
>sp|Q5M2L6|RSMA_STRT2 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rsmA
PE=3 SV=1
Length = 290
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 9/258 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML 338
Y + F VPRT F P P VD+A++ ++ V FF + ++F +RK L
Sbjct: 179 YMTTKMAFAVPRTVFVPAPNVDSAILKMT-RRKQPLVEVKDEDFFFRVSKASFLHRRKTL 237
Query: 339 RKSL-QHLCTSLEIEKAL 355
+L H S E++ L
Sbjct: 238 WNNLTSHFGKSEEVKNKL 255
>sp|Q9KGK4|RSMA_BACHD Ribosomal RNA small subunit methyltransferase A OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=rsmA PE=3 SV=1
Length = 289
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 128/232 (55%), Gaps = 12/232 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + + A++ +EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLARQAKRVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++RE A + + V+ ED +K ++ + + FE + VVAN+P+ ++T ++
Sbjct: 83 IPVLRETLAPYENVTVINEDVLKADVKQVIATTFEEGQD----LMVVANLPYYVTTPILM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V+++Q E A R+ +P T EY ++I +Y+ E KVP+T F
Sbjct: 139 KLLEAKLPVRGIVVMIQAEVADRIAAKPG--TKEYGSLSIAAQYYATAELAVKVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVT--STKSFFSMVSSAFNGKRKMLRKSLQH 344
PQP VD+AV+ +++ P VT + F++V ++F +RK + +L H
Sbjct: 197 PQPNVDSAVLRLTIREK---PPVTVADEEWLFAIVRASFANRRKTILNNLIH 245
>sp|Q0VMV2|RSMA_ALCBS Ribosomal RNA small subunit methyltransferase A OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=rsmA PE=3 SV=1
Length = 280
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 132/255 (51%), Gaps = 13/255 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + + D++ +Q GD ++EIGPG G+LT LL + +E D+ +
Sbjct: 7 RKRFGQHFLHDRNLVDRMIRTLGLQTGDTLVEIGPGRGALTYPLLEELPHLHVVELDRDL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L+R+ + ++L + + D ++ R+ K + +V+ N+P+NIST +I
Sbjct: 67 IALLRQE-NTPERLTIHESDALRFDFRT--------LKPADKPLRVIGNLPYNISTPLIF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
LL D S++ +LQ+E RL S T ++ ++I V ++ + +Y F VP F P
Sbjct: 118 HLLAQADAISDMTFMLQKEVVERLTA-SPGTRDWGRLSIMVQYHCQADYLFFVPPEAFSP 176
Query: 296 QPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
P+VD+AVV + +PA +V+ AF +RK +R L+ ++ + +
Sbjct: 177 PPRVDSAVVRLIPHDSPPHPA-DDEDHLRKLVAQAFTQRRKAIRNGLKSWVSAEQFQAVG 235
Query: 356 GDVGLPAT--AAADY 368
D GL + ADY
Sbjct: 236 IDAGLRPDQLSVADY 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,834,718
Number of Sequences: 539616
Number of extensions: 5367054
Number of successful extensions: 17073
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 14464
Number of HSP's gapped (non-prelim): 830
length of query: 397
length of database: 191,569,459
effective HSP length: 120
effective length of query: 277
effective length of database: 126,815,539
effective search space: 35127904303
effective search space used: 35127904303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)