Query 015990
Match_columns 397
No_of_seqs 468 out of 3678
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0030 KsgA Dimethyladenosine 100.0 8.4E-61 1.8E-65 448.6 25.7 256 113-389 2-257 (259)
2 PTZ00338 dimethyladenosine tra 100.0 1.4E-54 3.1E-59 419.0 25.5 255 110-388 5-288 (294)
3 PRK00274 ksgA 16S ribosomal RN 100.0 1.9E-52 4.2E-57 401.6 27.8 267 102-388 3-270 (272)
4 TIGR00755 ksgA dimethyladenosi 100.0 3.1E-50 6.8E-55 382.6 25.5 251 114-385 2-252 (253)
5 PRK14896 ksgA 16S ribosomal RN 100.0 1.2E-48 2.6E-53 372.7 26.3 251 114-388 2-256 (258)
6 PF00398 RrnaAD: Ribosomal RNA 100.0 2.2E-49 4.7E-54 378.6 20.8 260 113-388 2-262 (262)
7 KOG0820 Ribosomal RNA adenine 100.0 1.7E-42 3.8E-47 319.7 20.7 255 111-389 28-310 (315)
8 KOG0821 Predicted ribosomal RN 100.0 3.2E-35 6.9E-40 263.7 16.2 276 105-388 14-304 (326)
9 smart00650 rADc Ribosomal RNA 100.0 4.1E-35 8.9E-40 262.3 16.6 167 130-309 2-168 (169)
10 COG2518 Pcm Protein-L-isoaspar 99.7 1E-15 2.3E-20 139.3 14.4 143 89-244 4-166 (209)
11 PRK13942 protein-L-isoaspartat 99.6 6.6E-14 1.4E-18 129.8 16.0 145 87-244 6-173 (212)
12 PF01135 PCMT: Protein-L-isoas 99.6 2.3E-14 5.1E-19 132.2 12.6 145 87-244 2-169 (209)
13 COG2263 Predicted RNA methylas 99.6 1.1E-13 2.4E-18 123.2 15.8 160 114-300 16-185 (198)
14 TIGR00080 pimt protein-L-isoas 99.6 1.7E-13 3.6E-18 127.3 16.7 146 86-244 6-174 (215)
15 PRK13944 protein-L-isoaspartat 99.5 4.2E-13 9.1E-18 123.8 16.1 145 87-244 2-170 (205)
16 PRK00312 pcm protein-L-isoaspa 99.5 1.2E-12 2.6E-17 121.1 15.7 147 84-244 6-172 (212)
17 PHA03412 putative methyltransf 99.4 9.2E-13 2E-17 122.6 10.6 102 110-230 21-127 (241)
18 PF12847 Methyltransf_18: Meth 99.3 6E-12 1.3E-16 103.9 9.3 73 141-225 1-78 (112)
19 COG4123 Predicted O-methyltran 99.3 5.8E-12 1.3E-16 118.1 8.5 98 120-230 26-128 (248)
20 PRK13943 protein-L-isoaspartat 99.3 9.8E-11 2.1E-15 114.9 15.1 145 87-244 7-177 (322)
21 TIGR00537 hemK_rel_arch HemK-r 99.3 4.4E-11 9.5E-16 107.8 11.5 82 133-228 11-93 (179)
22 PF05175 MTS: Methyltransferas 99.3 2.2E-11 4.7E-16 109.0 9.3 87 132-231 22-112 (170)
23 PRK14967 putative methyltransf 99.3 4.1E-11 9E-16 111.8 11.4 92 126-230 21-114 (223)
24 PRK14966 unknown domain/N5-glu 99.2 5.2E-11 1.1E-15 119.5 12.3 101 118-229 220-331 (423)
25 COG2226 UbiE Methylase involve 99.2 4.3E-11 9.3E-16 112.1 10.9 109 118-242 32-151 (238)
26 PRK10909 rsmD 16S rRNA m(2)G96 99.2 6.6E-11 1.4E-15 108.6 11.8 104 127-241 38-147 (199)
27 PHA03411 putative methyltransf 99.2 3.3E-11 7.3E-16 114.6 9.9 95 117-230 43-139 (279)
28 TIGR01177 conserved hypothetic 99.2 5.2E-11 1.1E-15 117.6 11.3 96 123-230 164-261 (329)
29 PF13659 Methyltransf_26: Meth 99.2 2.9E-11 6.3E-16 100.6 7.0 79 142-230 1-83 (117)
30 PTZ00098 phosphoethanolamine N 99.2 1E-10 2.2E-15 112.0 11.7 119 114-244 23-153 (263)
31 TIGR00477 tehB tellurite resis 99.2 8.6E-11 1.9E-15 107.5 10.0 86 131-229 20-106 (195)
32 PRK15001 SAM-dependent 23S rib 99.2 1.2E-10 2.6E-15 116.5 11.4 87 130-229 217-310 (378)
33 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.3E-10 2.9E-15 119.3 11.8 105 127-239 283-389 (443)
34 PRK11207 tellurite resistance 99.2 1.6E-10 3.4E-15 105.9 11.0 85 132-229 21-107 (197)
35 PRK03522 rumB 23S rRNA methylu 99.2 1.1E-10 2.4E-15 114.7 10.5 104 125-239 153-263 (315)
36 PF01209 Ubie_methyltran: ubiE 99.2 6E-11 1.3E-15 111.6 7.6 106 127-244 33-150 (233)
37 PRK10258 biotin biosynthesis p 99.2 1.5E-10 3.2E-15 109.8 10.1 103 126-243 27-136 (251)
38 TIGR03533 L3_gln_methyl protei 99.1 3.3E-10 7.2E-15 109.7 12.1 80 137-229 117-201 (284)
39 TIGR02752 MenG_heptapren 2-hep 99.1 3.8E-10 8.2E-15 105.5 12.1 92 126-229 30-126 (231)
40 COG2890 HemK Methylase of poly 99.1 1.9E-10 4E-15 111.1 9.8 73 144-230 113-189 (280)
41 PRK08287 cobalt-precorrin-6Y C 99.1 8.2E-10 1.8E-14 100.2 13.5 108 124-245 14-129 (187)
42 PRK14968 putative methyltransf 99.1 5.6E-10 1.2E-14 100.5 12.3 86 131-229 13-102 (188)
43 PLN02244 tocopherol O-methyltr 99.1 3.5E-10 7.6E-15 112.3 11.7 106 127-244 99-220 (340)
44 PF13847 Methyltransf_31: Meth 99.1 2.4E-10 5.1E-15 100.1 9.1 79 140-229 2-85 (152)
45 PLN02233 ubiquinone biosynthes 99.1 5.7E-10 1.2E-14 106.7 12.0 88 129-228 61-156 (261)
46 TIGR02469 CbiT precorrin-6Y C5 99.1 1E-09 2.2E-14 91.7 12.1 106 127-243 5-118 (124)
47 COG2227 UbiG 2-polyprenyl-3-me 99.1 1.3E-10 2.9E-15 107.6 7.2 143 115-271 30-192 (243)
48 PRK14103 trans-aconitate 2-met 99.1 2.5E-10 5.5E-15 108.6 8.8 97 129-243 17-122 (255)
49 PRK09489 rsmC 16S ribosomal RN 99.1 4.5E-10 9.7E-15 111.4 10.8 85 131-229 186-273 (342)
50 PRK00107 gidB 16S rRNA methylt 99.1 5.4E-10 1.2E-14 101.6 10.1 93 139-244 43-142 (187)
51 PRK11036 putative S-adenosyl-L 99.1 3.8E-10 8.3E-15 107.4 9.4 101 131-243 35-145 (255)
52 COG2264 PrmA Ribosomal protein 99.1 6.5E-10 1.4E-14 107.0 10.7 124 117-254 139-270 (300)
53 PF02384 N6_Mtase: N-6 DNA Met 99.1 5.7E-10 1.2E-14 109.2 10.6 106 114-230 20-138 (311)
54 TIGR02085 meth_trns_rumB 23S r 99.1 5.7E-10 1.2E-14 112.1 10.6 105 123-238 211-322 (374)
55 PRK01683 trans-aconitate 2-met 99.1 6.5E-10 1.4E-14 105.8 10.1 99 129-243 19-126 (258)
56 TIGR03704 PrmC_rel_meth putati 99.1 8.5E-10 1.8E-14 104.9 10.8 93 127-230 71-166 (251)
57 COG4106 Tam Trans-aconitate me 99.1 2.9E-10 6.2E-15 103.2 6.5 98 130-243 19-125 (257)
58 TIGR00138 gidB 16S rRNA methyl 99.0 6.4E-10 1.4E-14 100.6 8.8 90 141-244 42-139 (181)
59 COG2813 RsmC 16S RNA G1207 met 99.0 8.8E-10 1.9E-14 105.6 9.9 87 131-231 148-238 (300)
60 COG2242 CobL Precorrin-6B meth 99.0 2.4E-09 5.3E-14 95.8 11.9 122 124-260 17-145 (187)
61 PRK09328 N5-glutamine S-adenos 99.0 1.6E-09 3.5E-14 103.8 11.4 91 127-230 94-188 (275)
62 TIGR03534 RF_mod_PrmC protein- 99.0 1.4E-09 3.1E-14 102.6 10.8 91 127-231 74-168 (251)
63 TIGR00536 hemK_fam HemK family 99.0 1.2E-09 2.6E-14 105.7 10.5 92 127-231 99-196 (284)
64 COG3963 Phospholipid N-methylt 99.0 1.3E-09 2.8E-14 95.2 9.1 102 118-231 25-132 (194)
65 COG2230 Cfa Cyclopropane fatty 99.0 1.2E-09 2.6E-14 104.3 9.8 82 128-224 59-144 (283)
66 PRK11805 N5-glutamine S-adenos 99.0 1.2E-09 2.5E-14 107.0 9.9 75 143-230 135-214 (307)
67 TIGR00479 rumA 23S rRNA (uraci 99.0 1.3E-09 2.9E-14 111.5 10.6 104 127-238 278-384 (431)
68 PRK15451 tRNA cmo(5)U34 methyl 99.0 1.5E-09 3.2E-14 103.0 10.0 77 139-229 54-137 (247)
69 PF06325 PrmA: Ribosomal prote 99.0 7.5E-10 1.6E-14 107.2 7.9 124 117-257 138-269 (295)
70 KOG3420 Predicted RNA methylas 99.0 5E-10 1.1E-14 95.5 5.8 103 114-229 18-126 (185)
71 PRK00377 cbiT cobalt-precorrin 99.0 3.4E-09 7.3E-14 97.2 11.6 110 124-244 23-142 (198)
72 TIGR00095 RNA methyltransferas 99.0 4.7E-09 1E-13 95.7 12.4 109 123-239 30-145 (189)
73 PF02353 CMAS: Mycolic acid cy 99.0 1.5E-09 3.3E-14 104.4 9.7 108 128-250 49-169 (273)
74 PRK07402 precorrin-6B methylas 99.0 3.3E-09 7.1E-14 97.0 11.4 75 124-198 23-101 (196)
75 PF08241 Methyltransf_11: Meth 99.0 1.5E-09 3.2E-14 86.0 8.0 84 146-242 1-92 (95)
76 PF01170 UPF0020: Putative RNA 99.0 1.8E-09 3.8E-14 97.6 9.3 96 123-230 10-119 (179)
77 PRK12335 tellurite resistance 99.0 1.7E-09 3.7E-14 104.8 9.9 82 134-228 113-195 (287)
78 PLN02336 phosphoethanolamine N 99.0 2.8E-09 6E-14 110.4 11.9 115 118-244 241-366 (475)
79 PRK01544 bifunctional N5-gluta 99.0 1.8E-09 3.9E-14 112.5 10.3 77 141-230 138-219 (506)
80 TIGR02021 BchM-ChlM magnesium 99.0 3.2E-09 7E-14 98.6 10.8 82 128-224 40-126 (219)
81 PRK04266 fibrillarin; Provisio 99.0 3.1E-09 6.8E-14 99.4 10.6 101 135-244 66-173 (226)
82 COG2265 TrmA SAM-dependent met 99.0 1.6E-09 3.4E-14 110.2 9.3 107 127-242 279-388 (432)
83 PF13649 Methyltransf_25: Meth 99.0 2E-09 4.4E-14 87.6 8.0 81 145-237 1-89 (101)
84 COG2519 GCD14 tRNA(1-methylade 99.0 4.4E-09 9.6E-14 98.2 10.8 164 124-309 77-251 (256)
85 KOG1270 Methyltransferases [Co 98.9 2E-09 4.2E-14 100.6 7.9 112 142-270 90-225 (282)
86 PLN02396 hexaprenyldihydroxybe 98.9 2E-09 4.3E-14 105.8 8.3 93 140-244 130-232 (322)
87 PRK11088 rrmA 23S rRNA methylt 98.9 5.8E-09 1.3E-13 100.3 11.3 90 140-244 84-178 (272)
88 PF03602 Cons_hypoth95: Conser 98.9 8.4E-09 1.8E-13 93.5 11.6 121 125-253 24-153 (183)
89 TIGR00406 prmA ribosomal prote 98.9 7.4E-09 1.6E-13 100.5 11.9 93 140-246 158-258 (288)
90 PRK15128 23S rRNA m(5)C1962 me 98.9 8.3E-09 1.8E-13 104.2 12.5 98 123-230 204-306 (396)
91 PRK00121 trmB tRNA (guanine-N( 98.9 3.5E-09 7.6E-14 97.4 8.9 77 141-227 40-121 (202)
92 PRK10901 16S rRNA methyltransf 98.9 5.7E-09 1.2E-13 106.8 10.8 91 128-228 231-324 (427)
93 PF08704 GCD14: tRNA methyltra 98.9 4.8E-09 1E-13 99.1 9.5 128 124-260 23-160 (247)
94 TIGR00446 nop2p NOL1/NOP2/sun 98.9 7E-09 1.5E-13 99.4 10.6 83 134-228 64-151 (264)
95 PLN02336 phosphoethanolamine N 98.9 4.3E-09 9.3E-14 109.0 9.8 95 125-229 21-115 (475)
96 TIGR00740 methyltransferase, p 98.9 8.7E-09 1.9E-13 97.1 10.8 90 140-243 52-157 (239)
97 PRK11727 23S rRNA mA1618 methy 98.9 8.2E-09 1.8E-13 101.1 10.5 84 141-232 114-204 (321)
98 TIGR00452 methyltransferase, p 98.9 2.1E-08 4.5E-13 98.3 13.0 118 114-245 90-223 (314)
99 PRK05785 hypothetical protein; 98.9 6E-09 1.3E-13 97.6 8.3 69 141-227 51-120 (226)
100 PF05401 NodS: Nodulation prot 98.9 6.2E-09 1.3E-13 94.0 7.9 108 136-259 38-155 (201)
101 TIGR03587 Pse_Me-ase pseudamin 98.9 1.5E-08 3.3E-13 93.4 10.7 73 139-227 41-115 (204)
102 PRK14902 16S rRNA methyltransf 98.9 1.2E-08 2.6E-13 104.9 11.1 88 130-228 239-331 (444)
103 COG1041 Predicted DNA modifica 98.9 1.2E-08 2.6E-13 99.6 10.3 97 123-231 179-278 (347)
104 TIGR00091 tRNA (guanine-N(7)-) 98.9 7.4E-09 1.6E-13 94.6 8.4 78 141-227 16-97 (194)
105 PRK11705 cyclopropane fatty ac 98.9 1.8E-08 3.8E-13 101.6 11.7 99 129-243 155-263 (383)
106 PRK05031 tRNA (uracil-5-)-meth 98.8 1.4E-08 3E-13 101.6 10.7 106 128-239 194-311 (362)
107 TIGR02987 met_A_Alw26 type II 98.8 7.2E-09 1.6E-13 108.7 8.9 105 117-229 1-124 (524)
108 TIGR02143 trmA_only tRNA (urac 98.8 1.5E-08 3.2E-13 101.2 10.7 113 125-239 182-302 (353)
109 PRK11873 arsM arsenite S-adeno 98.8 1.5E-08 3.2E-13 97.3 10.1 95 137-243 73-179 (272)
110 PRK08317 hypothetical protein; 98.8 2.8E-08 6E-13 92.4 11.5 104 128-243 6-120 (241)
111 PLN02672 methionine S-methyltr 98.8 1.1E-08 2.3E-13 113.6 10.1 76 142-228 119-214 (1082)
112 PF05958 tRNA_U5-meth_tr: tRNA 98.8 5.9E-09 1.3E-13 104.0 7.1 110 127-237 183-299 (352)
113 PLN02585 magnesium protoporphy 98.8 1.9E-08 4E-13 98.7 10.2 83 128-225 128-220 (315)
114 PLN02781 Probable caffeoyl-CoA 98.8 2E-08 4.3E-13 94.6 10.0 115 124-244 51-175 (234)
115 PRK06922 hypothetical protein; 98.8 2.4E-08 5.2E-13 104.9 11.1 82 137-228 414-498 (677)
116 PRK07580 Mg-protoporphyrin IX 98.8 3.7E-08 8.1E-13 91.7 11.2 84 129-227 48-137 (230)
117 PRK14904 16S rRNA methyltransf 98.8 2.1E-08 4.4E-13 103.2 10.2 83 132-227 241-328 (445)
118 PRK14903 16S rRNA methyltransf 98.8 1.9E-08 4.1E-13 102.9 9.8 89 129-228 225-318 (431)
119 KOG1271 Methyltransferases [Ge 98.8 7E-08 1.5E-12 85.6 11.9 104 96-201 20-132 (227)
120 PRK00517 prmA ribosomal protei 98.8 3.6E-08 7.7E-13 93.7 11.0 91 139-246 117-212 (250)
121 TIGR02072 BioC biotin biosynth 98.8 1.7E-08 3.6E-13 94.1 8.6 89 128-230 18-111 (240)
122 PF03848 TehB: Tellurite resis 98.8 3.3E-08 7.2E-13 89.9 10.1 82 132-226 21-103 (192)
123 PRK14901 16S rRNA methyltransf 98.8 2.3E-08 4.9E-13 102.5 10.1 93 128-228 239-336 (434)
124 PLN02490 MPBQ/MSBQ methyltrans 98.8 2.9E-08 6.3E-13 98.1 10.2 104 127-243 98-211 (340)
125 PRK15068 tRNA mo(5)U34 methylt 98.8 3.5E-08 7.5E-13 97.3 10.5 101 131-244 112-223 (322)
126 PRK04148 hypothetical protein; 98.8 5.7E-08 1.2E-12 83.1 10.1 93 128-236 3-97 (134)
127 PRK14121 tRNA (guanine-N(7)-)- 98.7 4.3E-08 9.3E-13 98.1 10.3 94 123-229 107-204 (390)
128 PLN03075 nicotianamine synthas 98.7 1.2E-07 2.5E-12 91.7 12.8 147 132-310 114-276 (296)
129 PRK00216 ubiE ubiquinone/menaq 98.7 6.3E-08 1.4E-12 90.3 10.8 88 126-225 36-129 (239)
130 PRK00811 spermidine synthase; 98.7 5.9E-08 1.3E-12 94.0 10.5 75 140-225 75-158 (283)
131 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.4E-08 7.3E-13 106.9 9.5 95 123-230 522-621 (702)
132 TIGR03840 TMPT_Se_Te thiopurin 98.7 1.2E-07 2.5E-12 88.1 11.7 70 132-201 25-108 (213)
133 PRK11188 rrmJ 23S rRNA methylt 98.7 8.6E-08 1.9E-12 88.7 10.7 74 139-225 49-125 (209)
134 PF02475 Met_10: Met-10+ like- 98.7 3.7E-08 8.1E-13 90.3 8.0 105 112-229 72-181 (200)
135 COG0742 N6-adenine-specific me 98.7 1.5E-07 3.1E-12 84.8 11.5 94 126-228 26-125 (187)
136 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 1.2E-07 2.7E-12 87.4 11.2 88 127-226 25-115 (223)
137 PRK05134 bifunctional 3-demeth 98.7 1E-07 2.2E-12 89.2 10.8 91 125-226 32-123 (233)
138 PRK06202 hypothetical protein; 98.7 7E-08 1.5E-12 90.5 9.5 79 138-229 57-141 (232)
139 KOG2904 Predicted methyltransf 98.7 7.1E-08 1.5E-12 90.6 9.2 105 127-239 131-243 (328)
140 PRK13255 thiopurine S-methyltr 98.7 1.8E-07 3.8E-12 87.2 11.8 69 133-201 29-111 (218)
141 PF07021 MetW: Methionine bios 98.7 6.6E-08 1.4E-12 87.2 8.0 78 131-225 5-83 (193)
142 COG2521 Predicted archaeal met 98.7 3.1E-08 6.7E-13 91.1 5.5 116 135-260 128-266 (287)
143 TIGR00563 rsmB ribosomal RNA s 98.7 1.1E-07 2.3E-12 97.4 10.1 91 128-228 225-320 (426)
144 TIGR01983 UbiG ubiquinone bios 98.6 1.3E-07 2.9E-12 87.7 9.3 90 125-225 25-120 (224)
145 PLN02476 O-methyltransferase 98.6 1.7E-07 3.7E-12 90.0 10.0 115 124-244 101-225 (278)
146 PF01596 Methyltransf_3: O-met 98.6 1.4E-07 3.1E-12 86.9 9.1 97 124-226 28-130 (205)
147 PF09445 Methyltransf_15: RNA 98.6 9.2E-08 2E-12 84.6 7.1 78 143-229 1-81 (163)
148 PRK00050 16S rRNA m(4)C1402 me 98.6 1.6E-07 3.5E-12 91.0 9.2 94 125-226 3-99 (296)
149 COG0116 Predicted N6-adenine-s 98.6 1.9E-07 4.1E-12 92.5 9.4 93 124-228 174-310 (381)
150 PRK01581 speE spermidine synth 98.6 3.1E-07 6.7E-12 90.9 10.7 92 125-227 131-236 (374)
151 PRK11783 rlmL 23S rRNA m(2)G24 98.6 2E-07 4.3E-12 101.0 10.2 95 125-229 173-315 (702)
152 TIGR02081 metW methionine bios 98.6 1.9E-07 4.2E-12 85.1 8.6 83 131-230 5-88 (194)
153 PTZ00146 fibrillarin; Provisio 98.6 2.6E-07 5.6E-12 89.1 9.5 99 136-244 127-234 (293)
154 COG4122 Predicted O-methyltran 98.6 3.6E-07 7.8E-12 84.6 10.1 111 125-245 43-164 (219)
155 smart00828 PKS_MT Methyltransf 98.5 2.2E-07 4.7E-12 86.4 8.0 89 143-244 1-101 (224)
156 TIGR00438 rrmJ cell division p 98.5 2.9E-07 6.2E-12 83.6 8.6 76 137-225 28-106 (188)
157 PLN02366 spermidine synthase 98.5 4.9E-07 1.1E-11 88.5 10.7 92 126-227 73-175 (308)
158 PRK04457 spermidine synthase; 98.5 3.3E-07 7.1E-12 87.8 9.2 75 140-225 65-144 (262)
159 KOG1540 Ubiquinone biosynthesi 98.5 3.8E-07 8.3E-12 85.0 8.9 110 118-243 81-210 (296)
160 KOG1661 Protein-L-isoaspartate 98.5 4.7E-07 1E-11 82.1 8.9 110 123-244 62-190 (237)
161 TIGR02716 C20_methyl_CrtF C-20 98.5 8.8E-07 1.9E-11 86.6 11.4 71 129-200 137-212 (306)
162 PRK03612 spermidine synthase; 98.5 4.1E-07 8.9E-12 95.3 9.4 78 140-228 296-384 (521)
163 COG2520 Predicted methyltransf 98.5 4E-07 8.6E-12 89.6 8.6 78 139-228 186-267 (341)
164 TIGR03438 probable methyltrans 98.5 1.2E-06 2.5E-11 85.7 11.5 66 132-199 56-127 (301)
165 cd02440 AdoMet_MTases S-adenos 98.5 7.7E-07 1.7E-11 70.1 8.3 75 144-229 1-78 (107)
166 KOG1541 Predicted protein carb 98.5 4.6E-07 9.9E-12 82.8 7.6 83 125-222 32-117 (270)
167 KOG3191 Predicted N6-DNA-methy 98.5 7.6E-07 1.6E-11 79.1 8.7 78 141-231 43-124 (209)
168 TIGR00417 speE spermidine synt 98.5 1.4E-06 3E-11 83.8 11.3 94 140-244 71-183 (270)
169 PRK04338 N(2),N(2)-dimethylgua 98.4 1E-06 2.3E-11 88.7 10.3 105 119-236 34-143 (382)
170 KOG2187 tRNA uracil-5-methyltr 98.4 6.5E-07 1.4E-11 90.9 8.7 114 119-239 361-478 (534)
171 smart00138 MeTrc Methyltransfe 98.4 8.2E-07 1.8E-11 85.2 9.0 73 140-224 98-210 (264)
172 PF13489 Methyltransf_23: Meth 98.4 1.2E-06 2.6E-11 76.3 9.2 49 130-178 10-59 (161)
173 KOG1500 Protein arginine N-met 98.4 8.4E-07 1.8E-11 85.5 7.8 92 121-226 157-252 (517)
174 PF08242 Methyltransf_12: Meth 98.4 4E-08 8.7E-13 79.4 -1.0 75 146-230 1-79 (99)
175 PRK10742 putative methyltransf 98.4 1.7E-06 3.7E-11 81.3 9.0 88 131-229 76-176 (250)
176 PLN02589 caffeoyl-CoA O-methyl 98.3 2.5E-06 5.3E-11 80.9 9.9 97 124-225 62-164 (247)
177 COG4076 Predicted RNA methylas 98.3 7.1E-07 1.5E-11 79.6 5.4 60 142-201 33-94 (252)
178 PF05724 TPMT: Thiopurine S-me 98.3 2.6E-06 5.7E-11 79.3 8.3 75 126-201 23-111 (218)
179 KOG1499 Protein arginine N-met 98.3 3.1E-06 6.7E-11 82.6 8.3 74 138-224 57-134 (346)
180 COG1092 Predicted SAM-dependen 98.2 4.6E-06 1E-10 83.8 8.9 94 124-227 202-300 (393)
181 PRK13256 thiopurine S-methyltr 98.2 1.2E-05 2.6E-10 75.2 11.0 76 125-201 28-117 (226)
182 PF05185 PRMT5: PRMT5 arginine 98.2 7.8E-06 1.7E-10 83.9 10.2 71 142-225 187-266 (448)
183 PF08003 Methyltransf_9: Prote 98.2 1.4E-05 3E-10 77.1 10.7 103 131-246 105-218 (315)
184 TIGR00478 tly hemolysin TlyA f 98.2 9.2E-06 2E-10 76.1 9.2 48 131-178 64-113 (228)
185 KOG4300 Predicted methyltransf 98.2 5.5E-06 1.2E-10 75.1 7.2 98 136-244 71-179 (252)
186 KOG2915 tRNA(1-methyladenosine 98.1 1.1E-05 2.4E-10 76.0 9.4 88 130-227 94-187 (314)
187 PF08123 DOT1: Histone methyla 98.1 1.2E-05 2.6E-10 74.2 8.0 94 125-227 26-133 (205)
188 KOG2730 Methylase [General fun 98.1 6.4E-06 1.4E-10 75.4 5.7 106 120-233 72-181 (263)
189 PLN02823 spermine synthase 98.0 2.6E-05 5.7E-10 77.2 9.7 75 141-226 103-185 (336)
190 COG4976 Predicted methyltransf 98.0 4.2E-06 9E-11 77.1 3.6 88 127-227 111-200 (287)
191 PF05971 Methyltransf_10: Prot 98.0 3.6E-05 7.7E-10 74.6 9.7 105 121-232 72-192 (299)
192 TIGR00308 TRM1 tRNA(guanine-26 98.0 3.4E-05 7.5E-10 77.4 9.8 81 143-235 46-131 (374)
193 PF02390 Methyltransf_4: Putat 97.9 2.4E-05 5.2E-10 71.7 7.5 76 143-227 19-98 (195)
194 KOG2671 Putative RNA methylase 97.9 1.5E-05 3.2E-10 77.3 5.6 117 106-234 174-301 (421)
195 COG0286 HsdM Type I restrictio 97.9 3.2E-05 7E-10 80.5 8.3 108 113-228 159-275 (489)
196 PF10672 Methyltrans_SAM: S-ad 97.9 4.5E-05 9.7E-10 73.7 8.4 94 123-227 107-205 (286)
197 PF10294 Methyltransf_16: Puta 97.9 7.8E-05 1.7E-09 66.9 9.2 82 138-228 42-131 (173)
198 PRK11933 yebU rRNA (cytosine-C 97.8 7E-05 1.5E-09 77.3 9.2 95 120-226 91-192 (470)
199 PF05219 DREV: DREV methyltran 97.8 0.0001 2.2E-09 69.6 9.2 113 118-249 66-190 (265)
200 TIGR00006 S-adenosyl-methyltra 97.8 0.00013 2.8E-09 71.0 10.1 98 122-226 1-101 (305)
201 PF13679 Methyltransf_32: Meth 97.8 8.6E-05 1.9E-09 64.3 7.7 59 139-197 23-92 (141)
202 TIGR01444 fkbM_fam methyltrans 97.8 6.3E-05 1.4E-09 64.6 6.5 56 144-199 1-60 (143)
203 PRK11760 putative 23S rRNA C24 97.7 0.00016 3.5E-09 71.0 8.9 85 139-241 209-296 (357)
204 COG0220 Predicted S-adenosylme 97.7 9.9E-05 2.1E-09 69.1 7.0 77 143-228 50-130 (227)
205 COG0421 SpeE Spermidine syntha 97.7 0.00023 4.9E-09 68.8 9.6 72 143-225 78-157 (282)
206 PF01564 Spermine_synth: Sperm 97.5 0.00041 8.8E-09 65.9 8.9 77 140-227 75-160 (246)
207 KOG2361 Predicted methyltransf 97.5 0.00046 1E-08 64.3 8.6 80 120-199 47-134 (264)
208 KOG3010 Methyltransferase [Gen 97.5 0.00021 4.5E-09 66.6 5.9 54 128-184 22-76 (261)
209 KOG2899 Predicted methyltransf 97.4 0.00018 3.8E-09 67.0 5.1 46 140-185 57-104 (288)
210 PF03291 Pox_MCEL: mRNA cappin 97.4 0.00072 1.6E-08 66.9 9.2 112 141-260 62-197 (331)
211 PF01728 FtsJ: FtsJ-like methy 97.4 0.00024 5.2E-09 63.9 5.1 75 141-226 23-100 (181)
212 PRK00536 speE spermidine synth 97.4 0.0014 3E-08 62.7 10.4 104 127-245 55-169 (262)
213 COG0144 Sun tRNA and rRNA cyto 97.3 0.0013 2.8E-08 65.8 9.7 90 129-227 144-239 (355)
214 PF01861 DUF43: Protein of unk 97.1 0.0038 8.2E-08 58.5 10.3 106 114-229 15-124 (243)
215 KOG1663 O-methyltransferase [S 97.1 0.0031 6.7E-08 58.5 9.4 96 123-224 55-156 (237)
216 KOG2940 Predicted methyltransf 97.1 0.00097 2.1E-08 61.7 5.8 92 142-246 73-173 (325)
217 COG3897 Predicted methyltransf 97.1 0.0014 3E-08 59.3 6.7 88 128-230 66-156 (218)
218 PRK01544 bifunctional N5-gluta 97.1 0.0015 3.2E-08 68.5 7.6 79 141-229 347-429 (506)
219 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.0 0.0019 4.1E-08 62.6 7.8 86 132-227 76-166 (283)
220 PF01795 Methyltransf_5: MraW 97.0 0.0027 5.8E-08 62.0 8.2 97 124-226 3-102 (310)
221 PF00891 Methyltransf_2: O-met 97.0 0.0049 1.1E-07 57.9 9.8 87 131-237 90-179 (241)
222 cd00315 Cyt_C5_DNA_methylase C 97.0 0.0021 4.6E-08 62.0 7.3 71 144-228 2-73 (275)
223 COG0293 FtsJ 23S rRNA methylas 96.9 0.0026 5.7E-08 58.3 7.2 78 139-229 43-123 (205)
224 PRK11524 putative methyltransf 96.9 0.0031 6.7E-08 61.1 7.9 58 126-184 194-251 (284)
225 KOG1975 mRNA cap methyltransfe 96.9 0.0023 5E-08 62.0 6.5 114 139-260 115-248 (389)
226 PF01555 N6_N4_Mtase: DNA meth 96.8 0.0031 6.7E-08 57.9 7.1 57 124-181 175-231 (231)
227 COG0357 GidB Predicted S-adeno 96.8 0.0027 5.9E-08 58.8 6.6 60 142-201 68-131 (215)
228 PHA01634 hypothetical protein 96.8 0.0027 5.9E-08 53.5 5.3 46 141-186 28-74 (156)
229 COG1189 Predicted rRNA methyla 96.7 0.0062 1.3E-07 56.9 8.1 85 131-228 68-155 (245)
230 PF02527 GidB: rRNA small subu 96.7 0.0065 1.4E-07 55.1 8.0 68 144-224 51-122 (184)
231 COG0275 Predicted S-adenosylme 96.6 0.013 2.9E-07 56.5 9.9 78 123-200 5-86 (314)
232 PF04816 DUF633: Family of unk 96.6 0.013 2.7E-07 54.2 9.3 80 145-236 1-86 (205)
233 PRK13699 putative methylase; P 96.6 0.0087 1.9E-07 56.1 8.0 60 125-185 148-207 (227)
234 PF04445 SAM_MT: Putative SAM- 96.5 0.0041 8.9E-08 58.3 5.6 86 132-228 64-162 (234)
235 PF00145 DNA_methylase: C-5 cy 96.3 0.0096 2.1E-07 58.0 6.9 68 144-226 2-70 (335)
236 COG4262 Predicted spermidine s 96.3 0.011 2.4E-07 58.3 7.0 77 140-227 288-375 (508)
237 PF05891 Methyltransf_PK: AdoM 96.2 0.012 2.6E-07 54.5 6.6 72 141-224 55-129 (218)
238 COG3129 Predicted SAM-dependen 96.2 0.015 3.3E-07 54.0 7.1 102 127-235 58-171 (292)
239 PLN02232 ubiquinone biosynthes 96.2 0.0082 1.8E-07 53.0 5.0 49 167-227 1-54 (160)
240 PF07091 FmrO: Ribosomal RNA m 96.0 0.016 3.5E-07 54.7 6.2 61 140-200 104-167 (251)
241 TIGR03439 methyl_EasF probable 95.9 0.037 8.1E-07 54.5 9.0 66 132-199 69-144 (319)
242 TIGR00675 dcm DNA-methyltransf 95.8 0.016 3.5E-07 57.0 5.8 67 145-226 1-68 (315)
243 PF01269 Fibrillarin: Fibrilla 95.8 0.055 1.2E-06 50.3 8.7 89 137-234 69-160 (229)
244 KOG1501 Arginine N-methyltrans 95.7 0.018 3.8E-07 58.1 5.4 51 144-194 69-123 (636)
245 KOG4589 Cell division protein 95.6 0.025 5.4E-07 51.0 5.6 77 139-228 67-147 (232)
246 COG0500 SmtA SAM-dependent met 95.5 0.069 1.5E-06 43.7 7.8 53 145-198 52-109 (257)
247 PF09243 Rsm22: Mitochondrial 95.3 0.03 6.6E-07 54.0 5.6 59 128-186 20-81 (274)
248 PRK10611 chemotaxis methyltran 95.1 0.086 1.9E-06 51.2 8.2 60 123-182 96-166 (287)
249 KOG1227 Putative methyltransfe 95.1 0.0087 1.9E-07 57.5 1.0 60 141-200 194-258 (351)
250 KOG2078 tRNA modification enzy 94.9 0.02 4.3E-07 57.6 2.9 61 139-199 247-311 (495)
251 PRK10458 DNA cytosine methylas 94.8 0.16 3.6E-06 52.6 9.8 85 142-226 88-178 (467)
252 PF06080 DUF938: Protein of un 94.7 0.11 2.5E-06 47.7 7.4 69 130-199 15-88 (204)
253 PF04989 CmcI: Cephalosporin h 94.6 0.053 1.2E-06 49.9 5.0 85 117-201 8-99 (206)
254 COG0270 Dcm Site-specific DNA 94.6 0.099 2.1E-06 51.7 7.2 72 143-226 4-76 (328)
255 PF07942 N2227: N2227-like pro 94.4 0.26 5.6E-06 47.4 9.4 39 141-179 56-94 (270)
256 TIGR00497 hsdM type I restrict 94.4 0.15 3.2E-06 53.5 8.4 102 117-229 192-305 (501)
257 KOG3987 Uncharacterized conser 94.3 0.021 4.7E-07 52.2 1.6 69 114-182 82-153 (288)
258 COG1889 NOP1 Fibrillarin-like 94.3 0.23 5E-06 45.5 8.1 97 129-234 61-162 (231)
259 KOG1122 tRNA and rRNA cytosine 94.1 0.12 2.5E-06 52.2 6.5 85 134-228 234-323 (460)
260 KOG2651 rRNA adenine N-6-methy 94.1 0.14 3E-06 51.0 6.8 44 138-181 150-194 (476)
261 KOG2912 Predicted DNA methylas 94.1 0.082 1.8E-06 51.4 5.0 80 146-230 107-191 (419)
262 COG2384 Predicted SAM-dependen 93.9 0.41 8.9E-06 44.4 9.2 59 141-199 16-79 (226)
263 PF11599 AviRa: RRNA methyltra 93.9 0.11 2.3E-06 48.0 5.3 57 128-184 34-98 (246)
264 PF05148 Methyltransf_8: Hypot 93.9 0.19 4.2E-06 46.3 6.9 89 129-243 59-154 (219)
265 PF04672 Methyltransf_19: S-ad 93.8 0.16 3.4E-06 48.7 6.4 73 128-200 54-134 (267)
266 COG1568 Predicted methyltransf 93.7 0.085 1.9E-06 50.4 4.3 105 114-230 123-234 (354)
267 PF03059 NAS: Nicotianamine sy 93.6 0.47 1E-05 45.8 9.4 58 143-200 122-187 (276)
268 PF12147 Methyltransf_20: Puta 93.3 0.78 1.7E-05 44.4 10.2 60 140-199 134-200 (311)
269 KOG4058 Uncharacterized conser 93.3 0.16 3.4E-06 44.2 4.9 75 128-202 59-137 (199)
270 KOG2198 tRNA cytosine-5-methyl 93.2 0.23 5E-06 49.4 6.7 89 136-227 150-246 (375)
271 PF02636 Methyltransf_28: Puta 93.2 0.27 5.8E-06 46.7 7.0 44 142-185 19-72 (252)
272 COG1565 Uncharacterized conser 92.5 0.47 1E-05 47.2 7.8 64 122-185 47-131 (370)
273 KOG3045 Predicted RNA methylas 92.2 0.33 7.1E-06 46.1 5.9 88 128-243 166-260 (325)
274 PF13578 Methyltransf_24: Meth 91.8 0.11 2.4E-06 42.0 2.1 70 146-226 1-78 (106)
275 COG0863 DNA modification methy 91.5 0.7 1.5E-05 44.5 7.7 60 125-185 207-266 (302)
276 KOG3115 Methyltransferase-like 91.4 0.19 4.1E-06 46.0 3.4 58 142-199 61-129 (249)
277 PF10237 N6-adenineMlase: Prob 91.3 0.81 1.8E-05 40.6 7.2 97 120-234 3-102 (162)
278 PF01739 CheR: CheR methyltran 91.0 0.42 9.1E-06 43.8 5.3 41 141-181 31-82 (196)
279 PF07757 AdoMet_MTase: Predict 90.9 0.33 7.1E-06 40.0 4.0 46 127-172 40-89 (112)
280 PF03141 Methyltransf_29: Puta 90.8 0.36 7.8E-06 49.9 5.0 56 127-182 99-161 (506)
281 KOG3924 Putative protein methy 90.5 0.35 7.5E-06 48.5 4.5 110 126-245 177-306 (419)
282 PF04378 RsmJ: Ribosomal RNA s 90.0 0.63 1.4E-05 44.1 5.6 79 146-232 62-140 (245)
283 KOG3178 Hydroxyindole-O-methyl 89.1 0.58 1.3E-05 46.2 4.8 56 142-199 178-233 (342)
284 PF02254 TrkA_N: TrkA-N domain 88.5 1.4 3.1E-05 35.9 6.2 64 150-226 4-71 (116)
285 COG1064 AdhP Zn-dependent alco 88.5 3.1 6.8E-05 41.3 9.5 93 135-243 160-255 (339)
286 COG3510 CmcI Cephalosporin hyd 88.3 1.7 3.8E-05 39.5 6.9 85 116-203 44-134 (237)
287 PF05206 TRM13: Methyltransfer 87.5 1.7 3.6E-05 41.6 6.8 75 128-203 5-89 (259)
288 KOG1596 Fibrillarin and relate 87.4 1.2 2.6E-05 42.0 5.4 90 136-234 151-243 (317)
289 KOG2360 Proliferation-associat 87.4 1 2.3E-05 45.0 5.4 67 133-199 205-276 (413)
290 COG4798 Predicted methyltransf 87.0 0.68 1.5E-05 42.2 3.5 41 133-173 40-83 (238)
291 PRK12829 short chain dehydroge 86.9 5.6 0.00012 37.0 10.0 84 139-226 8-95 (264)
292 PRK07454 short chain dehydroge 86.7 5.8 0.00013 36.5 9.9 83 141-226 5-92 (241)
293 PRK05867 short chain dehydroge 86.6 4.6 0.0001 37.6 9.2 84 141-226 8-95 (253)
294 KOG0024 Sorbitol dehydrogenase 86.4 5.4 0.00012 39.3 9.5 52 132-184 160-214 (354)
295 PLN02253 xanthoxin dehydrogena 86.1 5 0.00011 38.0 9.3 81 142-225 18-102 (280)
296 PRK07533 enoyl-(acyl carrier p 85.6 4.9 0.00011 37.7 8.9 84 141-226 9-97 (258)
297 COG1352 CheR Methylase of chem 85.6 2.2 4.7E-05 41.1 6.4 40 142-181 97-147 (268)
298 COG2961 ComJ Protein involved 85.4 2.7 5.8E-05 39.8 6.6 79 146-232 93-171 (279)
299 COG1867 TRM1 N2,N2-dimethylgua 85.3 2.7 5.9E-05 42.0 7.0 58 142-199 53-114 (380)
300 PF02086 MethyltransfD12: D12 85.1 1.2 2.6E-05 41.9 4.5 57 128-184 7-63 (260)
301 KOG2920 Predicted methyltransf 85.0 0.9 2E-05 43.7 3.5 50 128-177 100-153 (282)
302 KOG1201 Hydroxysteroid 17-beta 84.9 4.6 9.9E-05 39.3 8.2 82 141-224 37-121 (300)
303 PRK07326 short chain dehydroge 84.9 6.6 0.00014 35.9 9.3 58 142-200 6-67 (237)
304 PRK06949 short chain dehydroge 84.6 7 0.00015 36.2 9.4 83 141-226 8-95 (258)
305 PRK07231 fabG 3-ketoacyl-(acyl 84.5 7 0.00015 36.0 9.3 82 142-227 5-91 (251)
306 COG1748 LYS9 Saccharopine dehy 84.4 5.7 0.00012 40.3 9.0 91 143-244 2-95 (389)
307 PRK09072 short chain dehydroge 84.3 8.1 0.00018 36.1 9.8 83 141-227 4-90 (263)
308 PRK07523 gluconate 5-dehydroge 84.2 7.4 0.00016 36.1 9.4 83 141-226 9-96 (255)
309 PRK13394 3-hydroxybutyrate deh 84.2 6.4 0.00014 36.5 9.0 83 141-226 6-93 (262)
310 PRK06194 hypothetical protein; 84.1 7 0.00015 37.1 9.3 82 142-226 6-92 (287)
311 KOG1709 Guanidinoacetate methy 83.9 7.3 0.00016 36.3 8.6 70 129-199 90-161 (271)
312 KOG0822 Protein kinase inhibit 83.9 2.5 5.4E-05 44.1 6.2 58 144-201 370-435 (649)
313 PRK08226 short chain dehydroge 83.4 8.1 0.00018 36.0 9.4 83 141-226 5-91 (263)
314 PRK08862 short chain dehydroge 83.3 7.6 0.00016 35.9 9.0 82 141-225 4-91 (227)
315 COG0569 TrkA K+ transport syst 83.2 4.9 0.00011 37.5 7.6 72 144-227 2-76 (225)
316 PRK08340 glucose-1-dehydrogena 83.2 7.4 0.00016 36.3 9.0 80 144-226 2-85 (259)
317 PRK07677 short chain dehydroge 82.8 8.3 0.00018 35.8 9.1 81 143-225 2-86 (252)
318 PRK08589 short chain dehydroge 82.7 9.6 0.00021 36.0 9.6 83 141-226 5-91 (272)
319 PRK06124 gluconate 5-dehydroge 82.2 9.8 0.00021 35.3 9.4 82 141-226 10-97 (256)
320 PRK06505 enoyl-(acyl carrier p 82.1 8.4 0.00018 36.6 9.0 84 141-226 6-94 (271)
321 PRK03659 glutathione-regulated 81.9 6.3 0.00014 42.4 8.8 70 143-227 401-474 (601)
322 PTZ00357 methyltransferase; Pr 81.8 2.7 5.9E-05 45.2 5.7 81 144-225 703-800 (1072)
323 PRK07478 short chain dehydroge 81.7 11 0.00025 34.9 9.6 81 142-226 6-92 (254)
324 PF11899 DUF3419: Protein of u 81.6 3.2 6.9E-05 42.0 6.0 51 134-184 28-78 (380)
325 PRK08339 short chain dehydroge 81.2 12 0.00025 35.3 9.5 82 141-225 7-93 (263)
326 PRK12823 benD 1,6-dihydroxycyc 81.1 12 0.00026 34.8 9.5 81 141-225 7-92 (260)
327 KOG2352 Predicted spermine/spe 81.0 4.3 9.2E-05 42.0 6.7 101 141-244 47-158 (482)
328 PRK07035 short chain dehydroge 81.0 12 0.00025 34.7 9.4 84 141-226 7-94 (252)
329 PF03686 UPF0146: Uncharacteri 81.0 4.8 0.0001 34.2 5.9 76 142-237 14-91 (127)
330 PRK08213 gluconate 5-dehydroge 80.9 12 0.00025 34.9 9.4 83 141-227 11-99 (259)
331 PRK06603 enoyl-(acyl carrier p 80.9 9.6 0.00021 35.8 8.9 84 141-226 7-95 (260)
332 PRK07063 short chain dehydroge 80.9 12 0.00026 34.8 9.5 83 141-226 6-95 (260)
333 PRK05786 fabG 3-ketoacyl-(acyl 80.8 12 0.00026 34.1 9.3 83 141-226 4-90 (238)
334 PRK07984 enoyl-(acyl carrier p 80.8 11 0.00025 35.6 9.3 85 141-227 5-94 (262)
335 PTZ00134 40S ribosomal protein 80.7 1.8 3.9E-05 38.0 3.4 70 322-396 10-85 (154)
336 PRK07814 short chain dehydroge 80.7 11 0.00024 35.2 9.3 81 141-225 9-95 (263)
337 PRK12429 3-hydroxybutyrate deh 80.7 12 0.00026 34.6 9.3 82 142-226 4-90 (258)
338 PRK06172 short chain dehydroge 80.6 12 0.00026 34.7 9.3 83 141-226 6-93 (253)
339 PRK07576 short chain dehydroge 80.5 10 0.00022 35.6 8.9 81 141-225 8-94 (264)
340 PRK07774 short chain dehydroge 80.2 12 0.00026 34.4 9.2 84 141-227 5-93 (250)
341 PRK08945 putative oxoacyl-(acy 80.2 13 0.00028 34.3 9.4 82 140-225 10-100 (247)
342 PRK07666 fabG 3-ketoacyl-(acyl 80.1 12 0.00027 34.2 9.2 82 142-226 7-93 (239)
343 PLN03209 translocon at the inn 80.1 8.6 0.00019 41.0 8.8 85 132-226 70-168 (576)
344 PF00416 Ribosomal_S13: Riboso 80.1 5.7 0.00012 32.6 6.1 50 334-388 9-60 (107)
345 PRK08217 fabG 3-ketoacyl-(acyl 80.0 13 0.00029 34.1 9.4 83 141-226 4-91 (253)
346 PRK04053 rps13p 30S ribosomal 79.9 2.9 6.3E-05 36.6 4.4 70 322-396 5-80 (149)
347 PRK05866 short chain dehydroge 79.9 13 0.00028 35.8 9.5 81 142-225 40-125 (293)
348 PRK08690 enoyl-(acyl carrier p 79.7 11 0.00024 35.5 8.8 84 141-226 5-93 (261)
349 COG1063 Tdh Threonine dehydrog 79.4 5 0.00011 40.0 6.6 61 123-183 148-213 (350)
350 KOG1331 Predicted methyltransf 79.2 1.6 3.5E-05 42.0 2.9 66 130-203 36-101 (293)
351 PRK08277 D-mannonate oxidoredu 79.2 14 0.00031 34.7 9.5 83 141-226 9-96 (278)
352 PF06962 rRNA_methylase: Putat 79.2 4.8 0.0001 34.8 5.5 53 165-227 1-56 (140)
353 PRK07062 short chain dehydroge 79.2 14 0.00029 34.6 9.3 83 141-226 7-96 (265)
354 PF05050 Methyltransf_21: Meth 79.0 3.4 7.3E-05 35.5 4.7 36 147-182 1-42 (167)
355 PRK07024 short chain dehydroge 79.0 15 0.00033 34.2 9.5 79 143-225 3-86 (257)
356 PRK05650 short chain dehydroge 78.9 14 0.00031 34.7 9.3 80 144-226 2-86 (270)
357 cd05188 MDR Medium chain reduc 78.8 21 0.00046 32.7 10.4 94 139-243 132-228 (271)
358 PRK06181 short chain dehydroge 78.7 15 0.00033 34.2 9.4 80 143-225 2-86 (263)
359 PRK12826 3-ketoacyl-(acyl-carr 78.7 17 0.00036 33.3 9.6 83 141-227 5-93 (251)
360 PRK08251 short chain dehydroge 78.5 15 0.00033 33.7 9.3 81 142-225 2-89 (248)
361 PRK09496 trkA potassium transp 78.2 32 0.00069 35.1 12.3 88 127-227 214-307 (453)
362 PRK06113 7-alpha-hydroxysteroi 78.2 16 0.00035 33.9 9.4 83 141-226 10-97 (255)
363 PLN02780 ketoreductase/ oxidor 78.2 15 0.00032 36.0 9.4 58 141-198 52-115 (320)
364 PRK05872 short chain dehydroge 78.1 17 0.00037 34.9 9.8 83 141-226 8-94 (296)
365 TIGR01963 PHB_DH 3-hydroxybuty 78.1 14 0.00031 34.0 9.0 80 143-225 2-86 (255)
366 COG0099 RpsM Ribosomal protein 78.0 2.2 4.9E-05 35.6 3.0 50 336-390 13-64 (121)
367 PRK07102 short chain dehydroge 77.9 14 0.0003 34.0 8.8 77 143-225 2-84 (243)
368 PRK08267 short chain dehydroge 77.8 16 0.00035 33.9 9.3 80 143-226 2-86 (260)
369 PRK08643 acetoin reductase; Va 77.7 17 0.00036 33.7 9.3 82 142-226 2-88 (256)
370 PRK10669 putative cation:proto 77.7 12 0.00025 39.9 9.1 70 143-227 418-491 (558)
371 PRK08415 enoyl-(acyl carrier p 77.7 14 0.0003 35.3 8.9 83 141-226 4-92 (274)
372 PRK12939 short chain dehydroge 77.6 18 0.00038 33.2 9.4 83 141-226 6-93 (250)
373 PRK07453 protochlorophyllide o 77.6 18 0.00039 35.1 9.9 82 141-225 5-91 (322)
374 PRK09242 tropinone reductase; 77.5 17 0.00037 33.7 9.4 84 141-227 8-98 (257)
375 COG2933 Predicted SAM-dependen 77.5 5 0.00011 38.4 5.5 71 139-226 209-279 (358)
376 KOG1269 SAM-dependent methyltr 77.4 5.6 0.00012 40.0 6.2 66 138-203 107-176 (364)
377 PRK08265 short chain dehydroge 77.1 18 0.00038 33.9 9.4 80 141-226 5-89 (261)
378 PRK06720 hypothetical protein; 77.0 23 0.00051 31.3 9.6 84 141-227 15-103 (169)
379 PRK06139 short chain dehydroge 76.7 16 0.00035 36.0 9.2 83 141-226 6-93 (330)
380 PRK05854 short chain dehydroge 76.6 18 0.0004 35.1 9.6 83 141-225 13-101 (313)
381 PF07279 DUF1442: Protein of u 76.5 16 0.00035 33.9 8.5 72 126-197 26-106 (218)
382 PF11968 DUF3321: Putative met 76.4 9.3 0.0002 35.5 6.9 62 143-228 53-115 (219)
383 PRK07097 gluconate 5-dehydroge 76.2 20 0.00043 33.5 9.5 85 141-227 9-97 (265)
384 PRK06200 2,3-dihydroxy-2,3-dih 76.1 20 0.00043 33.5 9.4 81 141-226 5-89 (263)
385 CHL00137 rps13 ribosomal prote 76.0 3.3 7.1E-05 35.0 3.5 51 335-390 12-64 (122)
386 PRK07067 sorbitol dehydrogenas 75.8 20 0.00043 33.3 9.3 79 142-225 6-88 (257)
387 PRK05876 short chain dehydroge 75.7 20 0.00044 34.0 9.5 83 141-226 5-92 (275)
388 PRK04184 DNA topoisomerase VI 75.5 8.8 0.00019 40.6 7.3 62 319-388 242-306 (535)
389 cd08283 FDH_like_1 Glutathione 75.4 8.1 0.00018 38.7 6.9 48 135-182 178-228 (386)
390 PRK07890 short chain dehydroge 75.3 21 0.00046 32.9 9.4 81 141-225 4-90 (258)
391 PRK08085 gluconate 5-dehydroge 75.2 22 0.00047 33.0 9.4 83 141-226 8-95 (254)
392 PRK06138 short chain dehydroge 75.2 24 0.00052 32.4 9.6 82 141-226 4-90 (252)
393 TIGR03629 arch_S13P archaeal r 75.1 2.3 5E-05 37.0 2.4 57 335-396 16-75 (144)
394 PRK06196 oxidoreductase; Provi 75.0 18 0.00039 35.0 9.0 80 141-226 25-108 (315)
395 PRK07791 short chain dehydroge 74.9 21 0.00045 34.1 9.4 84 141-226 5-101 (286)
396 PRK06935 2-deoxy-D-gluconate 3 74.7 22 0.00047 33.1 9.3 82 141-226 14-100 (258)
397 PF02005 TRM: N2,N2-dimethylgu 74.7 9.8 0.00021 38.5 7.2 82 142-235 50-138 (377)
398 COG1255 Uncharacterized protei 74.1 11 0.00023 31.5 5.9 50 143-201 15-65 (129)
399 PRK05717 oxidoreductase; Valid 74.0 21 0.00046 33.1 9.0 81 141-227 9-94 (255)
400 PRK07109 short chain dehydroge 74.0 22 0.00048 34.9 9.5 83 141-226 7-94 (334)
401 PRK06079 enoyl-(acyl carrier p 73.9 19 0.00041 33.6 8.6 83 141-227 6-93 (252)
402 cd00401 AdoHcyase S-adenosyl-L 73.9 11 0.00024 38.6 7.4 56 126-181 185-243 (413)
403 PF07669 Eco57I: Eco57I restri 73.8 1.8 3.8E-05 35.4 1.3 15 217-231 2-16 (106)
404 TIGR00275 flavoprotein, HI0933 73.7 10 0.00022 38.5 7.1 62 321-387 268-330 (400)
405 PRK08628 short chain dehydroge 73.5 26 0.00055 32.5 9.4 82 141-226 6-92 (258)
406 PRK08303 short chain dehydroge 73.5 19 0.00041 34.9 8.8 82 141-225 7-103 (305)
407 KOG2352 Predicted spermine/spe 73.4 2.4 5.1E-05 43.8 2.4 58 142-199 296-357 (482)
408 PRK08159 enoyl-(acyl carrier p 73.4 20 0.00044 33.9 8.8 84 141-226 9-97 (272)
409 PRK07831 short chain dehydroge 73.3 26 0.00056 32.6 9.4 84 141-226 16-106 (262)
410 PRK06197 short chain dehydroge 73.3 22 0.00048 34.1 9.2 82 141-225 15-103 (306)
411 TIGR03206 benzo_BadH 2-hydroxy 73.2 28 0.00062 31.8 9.6 83 142-227 3-90 (250)
412 PRK05179 rpsM 30S ribosomal pr 72.9 3.5 7.5E-05 34.8 2.9 50 336-390 13-64 (122)
413 TIGR03325 BphB_TodD cis-2,3-di 72.4 24 0.00052 32.9 8.9 79 141-225 4-87 (262)
414 PRK03562 glutathione-regulated 72.1 16 0.00036 39.4 8.6 54 143-201 401-456 (621)
415 PRK12481 2-deoxy-D-gluconate 3 72.1 23 0.00049 33.0 8.7 81 141-226 7-92 (251)
416 PRK06182 short chain dehydroge 71.9 22 0.00048 33.4 8.7 78 142-227 3-84 (273)
417 PRK09424 pntA NAD(P) transhydr 71.9 7.8 0.00017 40.8 5.9 43 139-181 162-206 (509)
418 PRK06914 short chain dehydroge 71.6 27 0.00058 32.8 9.2 81 142-226 3-90 (280)
419 PRK07806 short chain dehydroge 71.5 25 0.00055 32.2 8.8 83 141-226 5-93 (248)
420 PRK09186 flagellin modificatio 71.2 27 0.00059 32.1 9.0 82 141-225 3-91 (256)
421 PRK05855 short chain dehydroge 71.2 23 0.0005 37.0 9.4 81 142-225 315-400 (582)
422 TIGR01289 LPOR light-dependent 71.2 32 0.00069 33.4 9.8 83 142-226 3-90 (314)
423 PRK06997 enoyl-(acyl carrier p 70.9 21 0.00045 33.5 8.2 84 141-226 5-93 (260)
424 PRK07889 enoyl-(acyl carrier p 70.7 20 0.00044 33.5 8.1 82 141-226 6-94 (256)
425 PRK12384 sorbitol-6-phosphate 70.5 29 0.00062 32.2 9.0 80 142-225 2-89 (259)
426 PRK10538 malonic semialdehyde 70.1 31 0.00067 31.8 9.1 77 144-225 2-82 (248)
427 PRK08324 short chain dehydroge 70.1 26 0.00056 38.3 9.7 82 141-226 421-507 (681)
428 PRK06057 short chain dehydroge 69.9 27 0.00058 32.4 8.7 78 141-225 6-87 (255)
429 TIGR03631 bact_S13 30S ribosom 69.9 4.3 9.2E-05 33.8 2.8 50 336-390 11-62 (113)
430 PRK05565 fabG 3-ketoacyl-(acyl 69.7 33 0.00072 31.2 9.2 82 142-227 5-93 (247)
431 PLN02896 cinnamyl-alcohol dehy 69.6 26 0.00056 34.5 8.9 59 141-200 9-71 (353)
432 PLN03154 putative allyl alcoho 69.5 23 0.00049 35.0 8.4 49 135-183 152-203 (348)
433 PRK06940 short chain dehydroge 69.1 33 0.00071 32.5 9.2 79 144-227 4-86 (275)
434 PRK05875 short chain dehydroge 69.0 36 0.00077 31.9 9.4 81 141-225 6-94 (276)
435 PRK07825 short chain dehydroge 69.0 34 0.00073 32.1 9.2 78 142-225 5-86 (273)
436 PRK13656 trans-2-enoyl-CoA red 68.8 46 0.00099 33.9 10.3 86 140-228 39-142 (398)
437 TIGR02415 23BDH acetoin reduct 68.7 37 0.00081 31.2 9.3 80 144-227 2-87 (254)
438 KOG2793 Putative N2,N2-dimethy 68.4 18 0.0004 34.3 7.0 41 141-182 86-127 (248)
439 TIGR01832 kduD 2-deoxy-D-gluco 68.2 41 0.00089 30.8 9.5 81 141-226 4-89 (248)
440 PRK05993 short chain dehydroge 67.9 30 0.00065 32.7 8.7 77 142-226 4-85 (277)
441 COG1743 Adenine-specific DNA m 67.8 15 0.00033 40.2 7.0 91 85-185 44-134 (875)
442 PRK07904 short chain dehydroge 67.8 34 0.00073 32.0 8.9 84 140-227 6-97 (253)
443 PRK08416 7-alpha-hydroxysteroi 67.7 40 0.00087 31.4 9.4 83 141-225 7-95 (260)
444 PRK06179 short chain dehydroge 67.4 23 0.0005 33.1 7.7 76 142-227 4-83 (270)
445 PRK06701 short chain dehydroge 67.0 36 0.00078 32.6 9.1 83 141-226 45-133 (290)
446 cd08254 hydroxyacyl_CoA_DH 6-h 67.0 17 0.00037 35.0 6.8 46 136-181 160-207 (338)
447 PRK07417 arogenate dehydrogena 66.9 13 0.00029 35.5 6.0 39 144-182 2-42 (279)
448 KOG1371 UDP-glucose 4-epimeras 66.7 24 0.00052 34.9 7.6 60 142-202 2-69 (343)
449 PRK06114 short chain dehydroge 66.2 39 0.00085 31.3 8.9 84 141-227 7-96 (254)
450 PRK06500 short chain dehydroge 65.8 53 0.0011 30.0 9.7 81 142-227 6-90 (249)
451 TIGR00561 pntA NAD(P) transhyd 65.5 43 0.00094 35.3 9.7 42 140-181 162-205 (511)
452 PRK08063 enoyl-(acyl carrier p 65.1 43 0.00093 30.7 8.9 82 142-226 4-91 (250)
453 PF03721 UDPG_MGDP_dh_N: UDP-g 65.1 6.1 0.00013 35.7 3.0 26 156-181 16-41 (185)
454 PRK08594 enoyl-(acyl carrier p 65.0 41 0.00088 31.5 8.8 83 141-226 6-96 (257)
455 PRK08993 2-deoxy-D-gluconate 3 64.9 44 0.00095 31.0 9.0 81 141-226 9-94 (253)
456 PRK06484 short chain dehydroge 64.8 39 0.00084 35.2 9.5 81 141-226 268-352 (520)
457 PRK06180 short chain dehydroge 64.8 43 0.00092 31.6 9.0 79 142-226 4-87 (277)
458 PRK06484 short chain dehydroge 64.7 35 0.00075 35.5 9.1 81 141-226 4-88 (520)
459 PRK06482 short chain dehydroge 64.5 46 0.001 31.2 9.2 77 143-225 3-84 (276)
460 KOG3350 Uncharacterized conser 64.5 69 0.0015 29.0 9.3 103 119-240 50-164 (217)
461 PRK07201 short chain dehydroge 64.5 36 0.00077 36.6 9.3 81 142-226 371-457 (657)
462 PRK06198 short chain dehydroge 64.4 44 0.00095 30.9 8.9 82 141-225 5-92 (260)
463 TIGR02622 CDP_4_6_dhtase CDP-g 63.8 21 0.00046 35.0 6.9 58 142-200 4-65 (349)
464 PRK06125 short chain dehydroge 63.4 49 0.0011 30.7 9.0 78 141-225 6-89 (259)
465 cd01065 NAD_bind_Shikimate_DH 63.3 77 0.0017 26.8 9.6 44 140-183 17-63 (155)
466 PRK12743 oxidoreductase; Provi 63.3 48 0.001 30.7 9.0 81 142-226 2-89 (256)
467 PF03486 HI0933_like: HI0933-l 63.2 26 0.00057 35.8 7.6 63 320-387 274-338 (409)
468 TIGR03201 dearomat_had 6-hydro 63.2 24 0.00052 34.6 7.2 46 136-181 161-208 (349)
469 COG4221 Short-chain alcohol de 63.0 58 0.0013 30.9 9.1 81 142-226 6-90 (246)
470 PRK05653 fabG 3-ketoacyl-(acyl 62.8 54 0.0012 29.7 9.1 81 142-226 5-91 (246)
471 PRK08278 short chain dehydroge 62.7 49 0.0011 31.2 9.0 82 141-226 5-99 (273)
472 cd01078 NAD_bind_H4MPT_DH NADP 62.7 43 0.00094 30.0 8.2 79 141-228 27-108 (194)
473 cd08295 double_bond_reductase_ 62.7 39 0.00085 32.8 8.6 49 135-183 145-196 (338)
474 PF00106 adh_short: short chai 62.5 33 0.0007 29.3 7.1 80 144-226 2-89 (167)
475 TIGR03366 HpnZ_proposed putati 62.5 26 0.00056 33.2 7.1 49 134-182 113-164 (280)
476 PLN02989 cinnamyl-alcohol dehy 62.3 33 0.00071 33.1 7.9 59 141-200 4-69 (325)
477 COG0300 DltE Short-chain dehyd 62.2 76 0.0016 30.5 10.0 87 141-229 5-96 (265)
478 PRK07775 short chain dehydroge 62.2 59 0.0013 30.6 9.5 81 142-225 10-95 (274)
479 PRK07074 short chain dehydroge 61.8 64 0.0014 29.7 9.5 78 143-225 3-85 (257)
480 PRK12828 short chain dehydroge 61.7 51 0.0011 29.7 8.7 83 141-227 6-92 (239)
481 PRK09291 short chain dehydroge 61.6 47 0.001 30.6 8.5 74 143-225 3-81 (257)
482 PLN02819 lysine-ketoglutarate 61.5 35 0.00076 39.1 8.7 90 142-243 569-674 (1042)
483 TIGR03589 PseB UDP-N-acetylglu 61.5 43 0.00093 32.6 8.6 57 142-200 4-66 (324)
484 PRK12745 3-ketoacyl-(acyl-carr 61.3 57 0.0012 30.0 9.1 80 143-225 3-88 (256)
485 PF03435 Saccharop_dh: Sacchar 61.2 33 0.00072 34.3 7.9 88 145-244 1-94 (386)
486 cd08237 ribitol-5-phosphate_DH 60.4 20 0.00044 35.2 6.1 44 138-181 160-207 (341)
487 PLN02740 Alcohol dehydrogenase 60.0 24 0.00053 35.2 6.7 47 135-181 192-241 (381)
488 COG5379 BtaA S-adenosylmethion 59.9 22 0.00049 34.6 5.9 49 135-183 57-105 (414)
489 PRK08177 short chain dehydroge 59.9 32 0.0007 31.2 7.0 74 144-226 3-80 (225)
490 PRK09135 pteridine reductase; 59.2 68 0.0015 29.1 9.1 83 141-226 5-94 (249)
491 PF13561 adh_short_C2: Enoyl-( 59.2 19 0.00041 33.2 5.4 70 156-227 13-83 (241)
492 PLN02657 3,8-divinyl protochlo 59.1 32 0.0007 34.7 7.4 79 141-225 59-144 (390)
493 cd08293 PTGR2 Prostaglandin re 59.1 42 0.00092 32.5 8.1 100 135-244 146-251 (345)
494 TIGR02822 adh_fam_2 zinc-bindi 59.0 32 0.0007 33.6 7.2 48 135-182 159-208 (329)
495 KOG1562 Spermidine synthase [A 58.9 13 0.00029 36.2 4.2 77 139-225 119-203 (337)
496 TIGR02818 adh_III_F_hyde S-(hy 58.9 30 0.00066 34.3 7.1 47 135-181 179-228 (368)
497 PRK12744 short chain dehydroge 58.8 61 0.0013 30.0 8.8 83 141-226 7-98 (257)
498 PLN02662 cinnamyl-alcohol dehy 58.8 35 0.00077 32.7 7.4 59 141-200 3-68 (322)
499 PRK12748 3-ketoacyl-(acyl-carr 58.8 73 0.0016 29.4 9.3 82 142-226 5-104 (256)
500 KOG0725 Reductases with broad 58.6 75 0.0016 30.5 9.4 85 141-227 7-99 (270)
No 1
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-61 Score=448.56 Aligned_cols=256 Identities=37% Similarity=0.606 Sum_probs=237.6
Q ss_pred CCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEE
Q 015990 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (397)
Q Consensus 113 ~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii 192 (397)
.+++|++||||++|++++++|++.+++.+++.|||||||.|.+|..|++++++|+|||+|+++++.+++.+...+|++++
T Consensus 2 ~k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi 81 (259)
T COG0030 2 FRPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVI 81 (259)
T ss_pred CCCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999998766799999
Q ss_pred EccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHHHhccCCCceeeeEEeeeHHHHHHHccCCCCCCCccce
Q 015990 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI 272 (397)
Q Consensus 193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~~~~~~lm~Qkeva~rl~~a~pg~k~y~~l 272 (397)
++|+++.++.++ ..++.||+|+||+|+|+|+.+|+.....+..+++|+|||+|+|++ |.||+++||++
T Consensus 82 ~~DaLk~d~~~l-----------~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~-A~pgsk~Yg~L 149 (259)
T COG0030 82 NGDALKFDFPSL-----------AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLV-AKPGSKDYGRL 149 (259)
T ss_pred eCchhcCcchhh-----------cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHh-CCCCCcccchh
Confidence 999999987531 157899999999999999999999888888999999999999999 89999999999
Q ss_pred eeeeecccCCeEeeeeCCCCccCCCCCceEEEEEEeccCCCCCCccchHHHHHHHHHHhcCCCchHHHHHhhhcCHHHHH
Q 015990 273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIE 352 (397)
Q Consensus 273 sv~~q~~~~~~~~~~v~~~~F~P~P~VdSavv~l~~~~~~~~~~~~~~~~f~~~v~~~F~~rRK~l~n~L~~~~~~~~~~ 352 (397)
||++|+++++++++.|||++|+|+|+||||||+++|++..+.+ +.+.+.|+++++++|+||||||+|+|+.+++ +.
T Consensus 150 sV~~q~~~~v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~-~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~---~~ 225 (259)
T COG0030 150 SVLVQYYADVEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSP-VKDEEKFFKFVKAAFSQRRKTLRNNLKNLFG---LE 225 (259)
T ss_pred hhhhhheEEEEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCc-ccCHHHHHHHHHHHHhhhhHHHHHHHHhhhh---HH
Confidence 9999999999999999999999999999999999998764443 4578899999999999999999999999876 67
Q ss_pred HHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 015990 353 KALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLIS 389 (397)
Q Consensus 353 ~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~~ 389 (397)
++|+++|++++.||| +|+++||++|++.+...
T Consensus 226 ~~l~~~~i~~~~R~e-----~ls~~~f~~L~~~l~~~ 257 (259)
T COG0030 226 EVLEAAGIDPNARAE-----NLSPEDFLKLANALKGF 257 (259)
T ss_pred HHHHhcCCCcccChh-----hCCHHHHHHHHHHHhhh
Confidence 899999999999999 99999999999987653
No 2
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=100.00 E-value=1.4e-54 Score=419.02 Aligned_cols=255 Identities=30% Similarity=0.448 Sum_probs=230.6
Q ss_pred hcCCCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcc---C
Q 015990 110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I 186 (397)
Q Consensus 110 ~~~~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~---~ 186 (397)
.+|.+++|.+||||++|+.++++|++.+.+.++++|||||||+|.+|..+++.+.+|+|+|+|+++++.+++++.. .
T Consensus 5 ~~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~ 84 (294)
T PTZ00338 5 KSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA 84 (294)
T ss_pred cCCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999998864 3
Q ss_pred CceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHHHhccCCCceeeeEEeeeHHHHHHHccCCCCC
Q 015990 187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT 266 (397)
Q Consensus 187 ~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~~~~~~lm~Qkeva~rl~~a~pg~ 266 (397)
++++++++|+++.++ ..+|.|++|+||+|+++++.++++....+..+++|+|||+|+|++ |.||+
T Consensus 85 ~~v~ii~~Dal~~~~--------------~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~-A~pg~ 149 (294)
T PTZ00338 85 SKLEVIEGDALKTEF--------------PYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLL-AQPGD 149 (294)
T ss_pred CcEEEEECCHhhhcc--------------cccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHh-cCCCC
Confidence 589999999998753 357899999999999999999998767788999999999999999 89999
Q ss_pred CCccceeeeeecccCCeEeeeeCCCCccCCCCCceEEEEEEeccCCCCCCccchHHHHHHHHHHhcCCCchHHHHHhh--
Q 015990 267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQH-- 344 (397)
Q Consensus 267 k~y~~lsv~~q~~~~~~~~~~v~~~~F~P~P~VdSavv~l~~~~~~~~~~~~~~~~f~~~v~~~F~~rRK~l~n~L~~-- 344 (397)
+.||++||++|++++++.+++||+++|+|+|+|||+||+|+|++.+. ..+.+.|+++++.+|+||||||+|+|+.
T Consensus 150 k~y~~LSv~~q~~~~~~~~~~V~~~~F~P~PkVdSavv~l~~~~~~~---~~~~~~~~~~v~~~F~~rrK~l~~~l~~~~ 226 (294)
T PTZ00338 150 ELYCRLSVNTQLLCRVTHLMKVSKNSFNPPPKVESSVVRIEPKNPPP---DVDFEEWDGLLRICFSRKNKTLSAIFKTKS 226 (294)
T ss_pred cccCHHHHHHHHHhceEEEEEeCchhCCCCCCcEEEEEEEEECCCCC---CcCHHHHHHHHHHHHhhccHHHHHHhCcch
Confidence 99999999999999999999999999999999999999999986532 2356789999999999999999998855
Q ss_pred -----------hcC-------------HHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 015990 345 -----------LCT-------------SLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLI 388 (397)
Q Consensus 345 -----------~~~-------------~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~ 388 (397)
+++ ++.+..+|+++|++ +.||| +|++++|++|++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~R~e-----~l~~~~f~~L~~~~~~ 288 (294)
T PTZ00338 227 VLQTLEHNYKSWCTMINKKVPVSLEPFKEFIAEILEDSGMF-EKRSV-----KLDIDDFLKLLLAFNK 288 (294)
T ss_pred hHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHcCCc-ccChh-----hCCHHHHHHHHHHHHH
Confidence 322 45667889999997 79999 9999999999998763
No 3
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=100.00 E-value=1.9e-52 Score=401.64 Aligned_cols=267 Identities=35% Similarity=0.572 Sum_probs=241.1
Q ss_pred HHHHHHHHhcCCCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHH
Q 015990 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 102 ~~~~~~l~~~~~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~ 181 (397)
..+.+.+..++.++++.+||||++|+.+++++++.+++.++++|||||||+|.+|..+++++.+|+|+|+|++|++.+++
T Consensus 3 ~~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~ 82 (272)
T PRK00274 3 PRTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAE 82 (272)
T ss_pred hhHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHHHhccCCCceeeeEEeeeHHHHHHHcc
Q 015990 182 RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE 261 (397)
Q Consensus 182 ~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~~~~~~lm~Qkeva~rl~~ 261 (397)
++.. ++++++++|+.++++.+ -.++.||+|+||+++++++.+++.....+..+++|+|+|+|+|++
T Consensus 83 ~~~~-~~v~~i~~D~~~~~~~~------------~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~- 148 (272)
T PRK00274 83 TFAE-DNLTIIEGDALKVDLSE------------LQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIV- 148 (272)
T ss_pred hhcc-CceEEEEChhhcCCHHH------------cCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHc-
Confidence 8754 68999999999986531 115899999999999999999997655578899999999999999
Q ss_pred CCCCCCCccceeeeeecccCCeEeeeeCCCCccCCCCCceEEEEEEeccCCCCCCccchHHHHHHHHHHhcCCCchHHHH
Q 015990 262 PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKS 341 (397)
Q Consensus 262 a~pg~k~y~~lsv~~q~~~~~~~~~~v~~~~F~P~P~VdSavv~l~~~~~~~~~~~~~~~~f~~~v~~~F~~rRK~l~n~ 341 (397)
+.||++.|+++||++|++++++++++|++++|+|+|+|||+||+++|++.+..+ ..+.+.|..+++.+|++|||+|+|+
T Consensus 149 a~pg~~~y~~lSv~~~~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~ 227 (272)
T PRK00274 149 AKPGSKAYGRLSVLVQYYCDVEKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVP-VKDEELFFRVVKAAFAQRRKTLRNN 227 (272)
T ss_pred CCCCCccccHHHHHHHHHcceEEEEEeChhhCCCCCCceEEEEEEEECCCCCCC-cccHHHHHHHHHHHHhchHHHHHHH
Confidence 899999999999999999999999999999999999999999999997654322 2356789999999999999999999
Q ss_pred HhhhcC-HHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 015990 342 LQHLCT-SLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLI 388 (397)
Q Consensus 342 L~~~~~-~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~ 388 (397)
|+.+++ ++.+..+|+.+|++++.||| +|+|+||++|++.+.+
T Consensus 228 l~~~~~~~~~~~~~l~~~~~~~~~r~~-----~l~~~~~~~L~~~~~~ 270 (272)
T PRK00274 228 LKNLFGSKEKLEEALEAAGIDPNRRAE-----TLSVEEFVRLANALAA 270 (272)
T ss_pred HHhhccchHHHHHHHHHCCCCcCCCce-----eCCHHHHHHHHHHHHh
Confidence 999875 66678899999999999999 9999999999998764
No 4
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=100.00 E-value=3.1e-50 Score=382.63 Aligned_cols=251 Identities=35% Similarity=0.595 Sum_probs=227.7
Q ss_pred CccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEE
Q 015990 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (397)
Q Consensus 114 ~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~ 193 (397)
+|++.+||||++|+.+++++++.++..++++|||||||+|.+|..|++++.+|+++|+|+++++.+++++...+++++++
T Consensus 2 ~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~ 81 (253)
T TIGR00755 2 RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIE 81 (253)
T ss_pred CCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEE
Confidence 68999999999999999999999999999999999999999999999999899999999999999999886556899999
Q ss_pred ccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHHHhccCCCceeeeEEeeeHHHHHHHccCCCCCCCcccee
Q 015990 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (397)
Q Consensus 194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~~~~~~lm~Qkeva~rl~~a~pg~k~y~~ls 273 (397)
+|+++.++.. .+..+.|++|+||+++++++.+++. ...+..+++|+|+|+|+||+ +.||++.|+.+|
T Consensus 82 ~D~~~~~~~~-----------~d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~-a~pg~~~y~~ls 148 (253)
T TIGR00755 82 GDALKVDLPD-----------FPKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLT-AKPGSKDYGRLS 148 (253)
T ss_pred CchhcCChhH-----------cCCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHc-cCCCCCcccHHH
Confidence 9999987531 0112599999999999999999995 33467899999999999999 899999999999
Q ss_pred eeeecccCCeEeeeeCCCCccCCCCCceEEEEEEeccCCCCCCccchHHHHHHHHHHhcCCCchHHHHHhhhcCHHHHHH
Q 015990 274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEK 353 (397)
Q Consensus 274 v~~q~~~~~~~~~~v~~~~F~P~P~VdSavv~l~~~~~~~~~~~~~~~~f~~~v~~~F~~rRK~l~n~L~~~~~~~~~~~ 353 (397)
+++|+++++++++.|++++|+|+|+|||+||+|+|++.+ ...+.+.|..+++.+|.+|||+|+|+|+.+++.+....
T Consensus 149 v~~~~~~~~~~~~~v~~~~F~P~PkVds~vv~l~~~~~~---~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~ 225 (253)
T TIGR00755 149 VLVQYFANVEIVFKVPPSAFYPPPKVDSAVVRLIPREQF---PVKDIALFEKLLKAAFSQRRKTLRNNLKQLLKASKLEE 225 (253)
T ss_pred HHHHHHcceEEEEEEchhhCcCCCCeeEEEEEEEECCCC---CcccHHHHHHHHHHHHccchHHHHHHHhhhcchhHHHH
Confidence 999999999999999999999999999999999998754 23456789999999999999999999999987767778
Q ss_pred HHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHH
Q 015990 354 ALGDVGLPATAAADYKFPITLPSTEYTLFMEH 385 (397)
Q Consensus 354 ~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~ 385 (397)
+++++|++++.||| +||++||++|++.
T Consensus 226 ~l~~~~i~~~~r~~-----~l~~~~~~~l~~~ 252 (253)
T TIGR00755 226 VLEQLGLDPTARAE-----QLSPEDFLRLANL 252 (253)
T ss_pred HHHHCCcCCCCCcc-----cCCHHHHHHHHHh
Confidence 89999999999999 9999999999875
No 5
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=100.00 E-value=1.2e-48 Score=372.73 Aligned_cols=251 Identities=31% Similarity=0.484 Sum_probs=221.9
Q ss_pred CccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEE
Q 015990 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (397)
Q Consensus 114 ~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~ 193 (397)
+|+|++||||++|+.++++|++.+++.++++|||||||+|.+|..+++.+.+|+++|+|+++++.+++++...+++++++
T Consensus 2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~ 81 (258)
T PRK14896 2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE 81 (258)
T ss_pred CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence 58999999999999999999999999999999999999999999999998899999999999999999886556899999
Q ss_pred ccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHHHhccCCCceeeeEEeeeHHHHHHHccCCCCCCCcccee
Q 015990 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (397)
Q Consensus 194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~~~~~~lm~Qkeva~rl~~a~pg~k~y~~ls 273 (397)
+|++++++ ..+|.|++|+||+++++++.++... .+..+++|+|+|+|+|++ +.+|+++||++|
T Consensus 82 ~D~~~~~~--------------~~~d~Vv~NlPy~i~s~~~~~l~~~--~~~~~~l~~q~e~A~rl~-a~~g~~~yg~ls 144 (258)
T PRK14896 82 GDALKVDL--------------PEFNKVVSNLPYQISSPITFKLLKH--GFEPAVLMYQKEFAERMV-AKPGTKEYGRLS 144 (258)
T ss_pred eccccCCc--------------hhceEEEEcCCcccCcHHHHHHHhh--ccceeEEEeeHHHHHHhc-CCCCCccccHHH
Confidence 99998754 2468999999999999999988763 355689999999999999 899999999999
Q ss_pred eeeecccCCeEeeeeCCCCccCCCCCceEEEEEEeccCCCCCCccchHHHHHHHHHHhcCCCchHHHHHhhhc---CHHH
Q 015990 274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLE 350 (397)
Q Consensus 274 v~~q~~~~~~~~~~v~~~~F~P~P~VdSavv~l~~~~~~~~~~~~~~~~f~~~v~~~F~~rRK~l~n~L~~~~---~~~~ 350 (397)
++.+++++++.++.+++.+|+|+|+|||+||+++|+++ .. ...+.+.|..+++.+|+||||+|+|+|+.++ +.+.
T Consensus 145 v~~~~~~~~~~~~~v~~~~F~P~PkV~s~vi~l~~~~~-~~-~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~ 222 (258)
T PRK14896 145 VMVQYYADVEIVEKVPPGAFSPKPKVDSAVVRLTPREP-KY-EVYDEDFFDDFVKALFQHRRKTLRNALKNSAHISGKED 222 (258)
T ss_pred HHHHHHeeeEEEEEeChHhCCCCCCceEEEEEEEECCC-CC-CCchHHHHHHHHHHHHccccHHHHHHHhhhccccchhH
Confidence 99999999999999999999999999999999999873 22 2334567999999999999999999999864 3323
Q ss_pred HHHHHHHC-CCCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 015990 351 IEKALGDV-GLPATAAADYKFPITLPSTEYTLFMEHNLI 388 (397)
Q Consensus 351 ~~~~l~~~-gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~ 388 (397)
...++.++ +++++.||| +||++||.+|++.+..
T Consensus 223 ~~~~~~~~~~~~~~~R~e-----~L~~~~~~~l~~~~~~ 256 (258)
T PRK14896 223 IKAVVEALPEELLNKRVF-----QLSPEEIAELANLLYE 256 (258)
T ss_pred HHHHHHHcCCCCcCCCCc-----cCCHHHHHHHHHHHHh
Confidence 34456666 456799999 9999999999998753
No 6
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=100.00 E-value=2.2e-49 Score=378.63 Aligned_cols=260 Identities=33% Similarity=0.559 Sum_probs=232.3
Q ss_pred CCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEE
Q 015990 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (397)
Q Consensus 113 ~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii 192 (397)
+++++++||||++|+.++++|++.+++.+++.|||||||+|.+|..|++.+.+|++||+|+++++.+++.+...++++++
T Consensus 2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi 81 (262)
T PF00398_consen 2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVI 81 (262)
T ss_dssp -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEE
T ss_pred CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999998867799999
Q ss_pred EccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHHHhccCCCc-eeeeEEeeeHHHHHHHccCCCCCCCccc
Q 015990 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRLVEPSLRTSEYRP 271 (397)
Q Consensus 193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~-~~~~~lm~Qkeva~rl~~a~pg~k~y~~ 271 (397)
++|+++++....+ ......|++|+||+++++++.+++..... ...+++|+|+|+|+|++ +.||++.|++
T Consensus 82 ~~D~l~~~~~~~~---------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~-a~pg~~~~~~ 151 (262)
T PF00398_consen 82 NGDFLKWDLYDLL---------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLL-AKPGSKRYSR 151 (262)
T ss_dssp ES-TTTSCGGGHC---------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHH-TSTTSTTCSH
T ss_pred ecchhccccHHhh---------cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhcc-CCCCCCccch
Confidence 9999999765321 24677999999999999999999874333 58899999999999999 8999999999
Q ss_pred eeeeeecccCCeEeeeeCCCCccCCCCCceEEEEEEeccCCCCCCccchHHHHHHHHHHhcCCCchHHHHHhhhcCHHHH
Q 015990 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEI 351 (397)
Q Consensus 272 lsv~~q~~~~~~~~~~v~~~~F~P~P~VdSavv~l~~~~~~~~~~~~~~~~f~~~v~~~F~~rRK~l~n~L~~~~~~~~~ 351 (397)
+|+++|++++++.++.+++++|+|+|+|||+||+++|++.+..+ ..+.+.|..+++.+|.+|||+|+|+|+.+++.+.+
T Consensus 152 lsv~~q~~~~i~~l~~v~~~~F~P~PkVds~vv~l~p~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~L~~~~~~~~~ 230 (262)
T PF00398_consen 152 LSVLAQAFFDIKLLFKVPPSCFYPPPKVDSAVVRLTPKENPLIP-PEDMDAFEYFVRQLFSQRRKTLRNSLKSLFPGEQL 230 (262)
T ss_dssp HHHHHHHHEEEEEEEEE-GGGEESSSSS-EEEEEEEE-SSCSS--CSHHHHHHHHHHHHHTTTTSBHHHHTTCTHHHHHH
T ss_pred hhhhhhhhhceeEecccCCccccCCCCCceEEEEEEECCCCCCc-ccCHHHHHHHHHHHHhCcchHHHHHHhhhcCHHHH
Confidence 99999999999999999999999999999999999999875432 34678999999999999999999999999888888
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 015990 352 EKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLI 388 (397)
Q Consensus 352 ~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~ 388 (397)
+.+++++||+++.|+| +|++++|.+|++.+.+
T Consensus 231 ~~~~~~~~i~~~~r~~-----~ls~~~~~~l~~~l~k 262 (262)
T PF00398_consen 231 EELLEKAGIDPNARAE-----ELSPEQFLKLFKYLNK 262 (262)
T ss_dssp HHHHHHCTHTTTTCGG-----CHHHHHHHHHHHHHHH
T ss_pred HHhhhhcCCCCCCCcc-----cCCHHHHHHHHHHhhC
Confidence 8888889999999999 9999999999998754
No 7
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=100.00 E-value=1.7e-42 Score=319.66 Aligned_cols=255 Identities=31% Similarity=0.419 Sum_probs=227.5
Q ss_pred cCCCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC---
Q 015990 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--- 187 (397)
Q Consensus 111 ~~~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--- 187 (397)
.+..+.+.+|||++.++.+++.|++.++++++|.|||||+|||.+|..|++.|++|+|+|+|++|++.++++....+
T Consensus 28 ~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~ 107 (315)
T KOG0820|consen 28 GGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSG 107 (315)
T ss_pred cCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHHHhccCCCceeeeEEeeeHHHHHHHccCCCCCC
Q 015990 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267 (397)
Q Consensus 188 ~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~~~~~~lm~Qkeva~rl~~a~pg~k 267 (397)
.+++++||+++.++ ..+|.+|+|+||+|+++++.+|+..+..+..+++|+|+|+|.|+. +.||++
T Consensus 108 kLqV~~gD~lK~d~--------------P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLv-a~pgd~ 172 (315)
T KOG0820|consen 108 KLQVLHGDFLKTDL--------------PRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLV-ARPGDS 172 (315)
T ss_pred eeeEEecccccCCC--------------cccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhc-cCCCCc
Confidence 89999999999864 478999999999999999999999999999999999999999998 899999
Q ss_pred CccceeeeeecccCCeEeeeeCCCCccCCCCCceEEEEEEeccCCCCCCccchHHHHHHHHHHhcCCCchHHHHHhhh--
Q 015990 268 EYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHL-- 345 (397)
Q Consensus 268 ~y~~lsv~~q~~~~~~~~~~v~~~~F~P~P~VdSavv~l~~~~~~~~~~~~~~~~f~~~v~~~F~~rRK~l~n~L~~~-- 345 (397)
.|.++|+.+|+++.++.+++|++++|.|+|+|+|++|++.++.+++ +.+..+|..+++.+|..+.||+....+..
T Consensus 173 ~Ycrlsin~q~~a~v~~i~KVgknnFrPpPkVessvVriepk~P~p---p~~~~ewdg~lri~F~rkNktl~a~fk~~~v 249 (315)
T KOG0820|consen 173 LYCRLSINVQLLARVTHIMKVGKNNFRPPPKVESSVVRIEPKNPRP---PVDFHEWDGLLRICFLRKNKTLMAPFKSSSV 249 (315)
T ss_pred hhceeehhhHHhhcchhheeecccccCCCCccccceeEeecCCCCC---ccchHHHHHHHHHHHHHHhHHhhcchhhhHH
Confidence 9999999999999999999999999999999999999999987643 23678899999999999998876655432
Q ss_pred -------c----------------CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHh
Q 015990 346 -------C----------------TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLIS 389 (397)
Q Consensus 346 -------~----------------~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~~ 389 (397)
+ -++.+.++|.+.+ ..+.||+ .++.+||++|...|.+.
T Consensus 250 ~~~ie~n~~~~~s~~n~~~~~~~~~~~~~~~il~~~~-~~~~Ra~-----k~~~~DFlrLL~~f~~~ 310 (315)
T KOG0820|consen 250 LQKIEKNYKKRESLDNIMIDLDFNLKPKIYNILFAGL-LADKRAR-----KMTVDDFLRLLLAFNAV 310 (315)
T ss_pred HHHhhhcccccccccccccccccchhHHHHHHHHhcc-hhhcccc-----cCCHHHHHHHhhhhhhc
Confidence 0 0223456676555 5567888 89999999999998753
No 8
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=100.00 E-value=3.2e-35 Score=263.71 Aligned_cols=276 Identities=22% Similarity=0.370 Sum_probs=232.0
Q ss_pred HHHHHhcCCCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHh
Q 015990 105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF 183 (397)
Q Consensus 105 ~~~l~~~~~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~ 183 (397)
.++..-+...++|.+.|||++|.++.++|+..++.-..+.|+|||+|.|.+|+.+...+. ++..||+|.++++-++...
T Consensus 14 Re~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~ 93 (326)
T KOG0821|consen 14 REIIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLS 93 (326)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHh
Confidence 344444556888999999999999999999999988889999999999999999999864 8999999999998777655
Q ss_pred ccC-CceEEEEccccccchhhhhhhHHhh-hcCCCCcceEeecCCCcCcHHHHHHhccC-----CCce---eeeEEeeeH
Q 015990 184 ASI-DQLKVLQEDFVKCHIRSHMLSLFER-RKSSSGFAKVVANIPFNISTDVIKQLLPM-----GDIF---SEVVLLLQE 253 (397)
Q Consensus 184 ~~~-~~v~ii~gD~~~~~~~~~~~~~~~~-~~~~~~~d~Vv~NlPy~i~s~il~~L~~~-----g~~~---~~~~lm~Qk 253 (397)
+.. +++.+.++|++.+..++++.+-... ++.......|++|+||+++++++.++++. |.+. ..|++.+|+
T Consensus 94 EAa~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~ 173 (326)
T KOG0821|consen 94 EAAPGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQK 173 (326)
T ss_pred hcCCcceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHH
Confidence 443 3899999999999887665443221 12223345799999999999998877753 2221 368899999
Q ss_pred HHHHHHccCCCCCCCccceeeeeecccCCeEeeeeCCCCccCCCCCceEEEEEEeccCCCCCCccchHHHHHHHHHHhcC
Q 015990 254 ETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNG 333 (397)
Q Consensus 254 eva~rl~~a~pg~k~y~~lsv~~q~~~~~~~~~~v~~~~F~P~P~VdSavv~l~~~~~~~~~~~~~~~~f~~~v~~~F~~ 333 (397)
|||+||+ +..|.+..+++||+.|+++++...|.||..+|.|+|.||..||++.|++.+... ...+...++++..|+.
T Consensus 174 EVAeRlC-aP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~--~~F~lvEkV~R~vF~~ 250 (326)
T KOG0821|consen 174 EVAERLC-APTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIE--QPFKLVEKVVRNVFQF 250 (326)
T ss_pred HHHHHhc-ccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCcccc--CCHHHHHHHHHHHHHH
Confidence 9999999 788999999999999999999999999999999999999999999998876533 2457888999999999
Q ss_pred CCchHHHHHhhhcCHHH----HHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 015990 334 KRKMLRKSLQHLCTSLE----IEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLI 388 (397)
Q Consensus 334 rRK~l~n~L~~~~~~~~----~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~ 388 (397)
|.|.....|+.+++++. ...+|+.+.|+++.|+- .|+.|+|..|++.|..
T Consensus 251 RQKY~~rGl~TL~PeE~r~E~~~~Ll~~~~idpT~r~~-----~L~iEQf~~LAE~Y~E 304 (326)
T KOG0821|consen 251 RQKYCHRGLRTLFPEEQRLESTGRLLELADIDPTLRPR-----QLSIEQFKSLAEVYRE 304 (326)
T ss_pred HHHHHHccccccCCHHHHHHHHHHHHHHhcCCCccCce-----eeeHHHHHHHHHHHHH
Confidence 99999999999987654 35679999999999855 9999999999999864
No 9
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=100.00 E-value=4.1e-35 Score=262.27 Aligned_cols=167 Identities=40% Similarity=0.610 Sum_probs=155.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHH
Q 015990 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (397)
Q Consensus 130 ~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~ 209 (397)
++++++.+++.++++|||||||+|.+|..+++++.+|+++|+|+++++.+++++...++++++++|+.++++.
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~------- 74 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLP------- 74 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcc-------
Confidence 5688889998899999999999999999999998899999999999999999987666899999999998653
Q ss_pred hhhcCCCCcceEeecCCCcCcHHHHHHhccCCCceeeeEEeeeHHHHHHHccCCCCCCCccceeeeeecccCCeEeeeeC
Q 015990 210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289 (397)
Q Consensus 210 ~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~~~~~~lm~Qkeva~rl~~a~pg~k~y~~lsv~~q~~~~~~~~~~v~ 289 (397)
...+|.|++|+||+++++++.+++........+++|+|+|+++|++ +.||++.|+.+|+++|++++++.+++|+
T Consensus 75 -----~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~-~~~~~~~y~~lsv~~~~~~~~~~~~~v~ 148 (169)
T smart00650 75 -----KLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLA-AKPGSKDYGRLSVLLQPYFDVKILFKVP 148 (169)
T ss_pred -----ccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhc-CCCCCCcccHHHHHHHHHeeEEEEEEEC
Confidence 1358999999999999999999988766778999999999999999 8999999999999999999999999999
Q ss_pred CCCccCCCCCceEEEEEEec
Q 015990 290 RTNFFPQPKVDAAVVTFKLK 309 (397)
Q Consensus 290 ~~~F~P~P~VdSavv~l~~~ 309 (397)
+++|+|+|+|||+||+++|+
T Consensus 149 ~~~F~P~PkV~s~~~~~~~~ 168 (169)
T smart00650 149 PEAFRPPPKVDSAVVRLERR 168 (169)
T ss_pred hhhCCCCCCceEEEEEEEEC
Confidence 99999999999999999986
No 10
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1e-15 Score=139.25 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=118.9
Q ss_pred HHHHhhh-cCCCChHHHHHHHHhcC---CCcc-------------ccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCc
Q 015990 89 ACIVCAR-SQDDDYHATIKALNSKG---RFPR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG 151 (397)
Q Consensus 89 ~mv~~~~-~~~~~~~~~~~~l~~~~---~~~~-------------k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G 151 (397)
+|+..++ ++++.+.++.++|.... +.|. ...|| ++..|.+..+|++.+.++++++|||||||
T Consensus 4 ~~l~~~lr~~~i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtG 82 (209)
T COG2518 4 RMLVERLRTEGITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQ-TISAPHMVARMLQLLELKPGDRVLEIGTG 82 (209)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCc-eecCcHHHHHHHHHhCCCCCCeEEEECCC
Confidence 5677777 99999999999986432 2221 12466 88999999999999999999999999999
Q ss_pred ccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeec-CCCc
Q 015990 152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFN 228 (397)
Q Consensus 152 ~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy~ 228 (397)
+|+.|+.|++.+.+|++||+++.+++.|++++...+ |++++++|...... ...+||+|+.+ -.-.
T Consensus 83 sGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~------------~~aPyD~I~Vtaaa~~ 150 (209)
T COG2518 83 SGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP------------EEAPYDRIIVTAAAPE 150 (209)
T ss_pred chHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC------------CCCCcCEEEEeeccCC
Confidence 999999999998899999999999999999998764 89999999988743 23678987655 3446
Q ss_pred CcHHHHHHhccCCCce
Q 015990 229 ISTDVIKQLLPMGDIF 244 (397)
Q Consensus 229 i~s~il~~L~~~g~~~ 244 (397)
++..++.+|.++|.++
T Consensus 151 vP~~Ll~QL~~gGrlv 166 (209)
T COG2518 151 VPEALLDQLKPGGRLV 166 (209)
T ss_pred CCHHHHHhcccCCEEE
Confidence 7789999999999764
No 11
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=6.6e-14 Score=129.82 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=115.2
Q ss_pred HHHHHHhhh-cCCCChHHHHHHHHhcC---CCccc-------------cCCCccCCCHHHHHHHHHHhcCCCCCEEEEEc
Q 015990 87 ASACIVCAR-SQDDDYHATIKALNSKG---RFPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (397)
Q Consensus 87 r~~mv~~~~-~~~~~~~~~~~~l~~~~---~~~~k-------------~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG 149 (397)
++.||++++ ++++.+..+.++|.... +.|.. ..|| .+..|.+..++++.+++.++++|||||
T Consensus 6 ~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~-~~~~p~~~~~~~~~l~~~~g~~VLdIG 84 (212)
T PRK13942 6 KRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQ-TISAIHMVAIMCELLDLKEGMKVLEIG 84 (212)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCC-EeCcHHHHHHHHHHcCCCCcCEEEEEC
Confidence 478999999 88999999999997432 22221 2356 578899999999999999999999999
Q ss_pred CcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhhhcCCCCcceEeec
Q 015990 150 PGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (397)
Q Consensus 150 ~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (397)
||+|++|..+++.. ++|+++|+++++++.+++++... ++++++++|+.+... ....||+|+.+
T Consensus 85 ~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~------------~~~~fD~I~~~ 152 (212)
T PRK13942 85 TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE------------ENAPYDRIYVT 152 (212)
T ss_pred CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC------------cCCCcCEEEEC
Confidence 99999999998862 59999999999999999998754 389999999977542 12578988766
Q ss_pred CC-CcCcHHHHHHhccCCCce
Q 015990 225 IP-FNISTDVIKQLLPMGDIF 244 (397)
Q Consensus 225 lP-y~i~s~il~~L~~~g~~~ 244 (397)
-. -++...+...|.++|.++
T Consensus 153 ~~~~~~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 153 AAGPDIPKPLIEQLKDGGIMV 173 (212)
T ss_pred CCcccchHHHHHhhCCCcEEE
Confidence 32 245567778888888653
No 12
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.57 E-value=2.3e-14 Score=132.24 Aligned_cols=145 Identities=21% Similarity=0.331 Sum_probs=108.8
Q ss_pred HHHHHHhhh-cCCCChHHHHHHHHhcC---CCccc-------------cCCCccCCCHHHHHHHHHHhcCCCCCEEEEEc
Q 015990 87 ASACIVCAR-SQDDDYHATIKALNSKG---RFPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (397)
Q Consensus 87 r~~mv~~~~-~~~~~~~~~~~~l~~~~---~~~~k-------------~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG 149 (397)
++.||++++ ...+.++.+.++|.... +.|.. ..|+ .+..|.+..+++++++++++++|||||
T Consensus 2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~-~is~P~~~a~~l~~L~l~pg~~VLeIG 80 (209)
T PF01135_consen 2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQ-TISAPSMVARMLEALDLKPGDRVLEIG 80 (209)
T ss_dssp HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTE-EE--HHHHHHHHHHTTC-TT-EEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeeccee-echHHHHHHHHHHHHhcCCCCEEEEec
Confidence 578999999 77799999999997532 23331 1244 577899999999999999999999999
Q ss_pred CcccHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeec
Q 015990 150 PGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (397)
Q Consensus 150 ~G~G~lt~~La~~-~--~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (397)
||+|++|..|+.. + .+|++||+++.+++.|++++...+ |++++++|....... ..+||.|+.+
T Consensus 81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~------------~apfD~I~v~ 148 (209)
T PF01135_consen 81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE------------EAPFDRIIVT 148 (209)
T ss_dssp -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG------------G-SEEEEEES
T ss_pred CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc------------CCCcCEEEEe
Confidence 9999999999987 3 369999999999999999998643 899999998765321 2579998876
Q ss_pred CC-CcCcHHHHHHhccCCCce
Q 015990 225 IP-FNISTDVIKQLLPMGDIF 244 (397)
Q Consensus 225 lP-y~i~s~il~~L~~~g~~~ 244 (397)
-. ..++..++.+|.++|.++
T Consensus 149 ~a~~~ip~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 149 AAVPEIPEALLEQLKPGGRLV 169 (209)
T ss_dssp SBBSS--HHHHHTEEEEEEEE
T ss_pred eccchHHHHHHHhcCCCcEEE
Confidence 43 366788999999988764
No 13
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.1e-13 Score=123.24 Aligned_cols=160 Identities=23% Similarity=0.312 Sum_probs=122.2
Q ss_pred CccccCCCccCCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccC-Cc
Q 015990 114 FPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQ 188 (397)
Q Consensus 114 ~~~k~~GQnfl~~~~i~~~i~~~~~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~-~~ 188 (397)
.|+..+-| |.+++.++..|+..+. .-.+.+|+|+|||||.++...+-.|+ .|+|||+|+++++.+++|.+.. ++
T Consensus 16 ~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~ 94 (198)
T COG2263 16 NPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGD 94 (198)
T ss_pred CCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCc
Confidence 67778888 9999999999888774 33677899999999999999999875 8999999999999999998764 48
Q ss_pred eEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCc-----HHHHHHhccCCCceeeeEEeeeHHHHHHHccCC
Q 015990 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-----TDVIKQLLPMGDIFSEVVLLLQEETALRLVEPS 263 (397)
Q Consensus 189 v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~-----s~il~~L~~~g~~~~~~~lm~Qkeva~rl~~a~ 263 (397)
+.++.+|+.+++ ..+|.++.||||... .+.+.+-++-+..+-+++.--.+++.++...+.
T Consensus 95 v~f~~~dv~~~~---------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~ 159 (198)
T COG2263 95 VEFVVADVSDFR---------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADL 159 (198)
T ss_pred eEEEEcchhhcC---------------CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhc
Confidence 999999999884 467899999999543 356666666666666666555667777766322
Q ss_pred CCCCCccceeeeeecccCCeEeeeeCCCCccCCCCCc
Q 015990 264 LRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300 (397)
Q Consensus 264 pg~k~y~~lsv~~q~~~~~~~~~~v~~~~F~P~P~Vd 300 (397)
.++ +... ....+.+|+...+.+-+|.
T Consensus 160 G~~-------v~~~----~~~~~~iP~~y~fH~k~~~ 185 (198)
T COG2263 160 GGT-------VTHI----ERARFPIPRTYPFHRKRVR 185 (198)
T ss_pred CCe-------EEEE----EEEEEecCccCchhhheee
Confidence 111 1111 1566888999888775543
No 14
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.55 E-value=1.7e-13 Score=127.28 Aligned_cols=146 Identities=22% Similarity=0.237 Sum_probs=114.7
Q ss_pred HHHHHHHhhh-cCCCChHHHHHHHHhcCC---Cccc-----------c--CCCccCCCHHHHHHHHHHhcCCCCCEEEEE
Q 015990 86 AASACIVCAR-SQDDDYHATIKALNSKGR---FPRK-----------S--LGQHYMLNSEINDQLAAAAAVQEGDIVLEI 148 (397)
Q Consensus 86 ar~~mv~~~~-~~~~~~~~~~~~l~~~~~---~~~k-----------~--~GQnfl~~~~i~~~i~~~~~~~~~~~VLEI 148 (397)
.+..|++.++ ++.+.++.+.++|..... .|.. . .|+ .+..|.+...+++.+.+.++++||||
T Consensus 6 ~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~VLDi 84 (215)
T TIGR00080 6 QKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQ-TISAPHMVAMMTELLELKPGMKVLEI 84 (215)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCC-EechHHHHHHHHHHhCCCCcCEEEEE
Confidence 4678999998 777999999999974322 2211 1 233 56778899999999999999999999
Q ss_pred cCcccHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhhhcCCCCcceEee
Q 015990 149 GPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (397)
Q Consensus 149 G~G~G~lt~~La~~~~---~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~ 223 (397)
|||+|+++..+++... +|+++|+++++++.|++++... ++++++++|+.+... ....||+|+.
T Consensus 85 G~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~------------~~~~fD~Ii~ 152 (215)
T TIGR00080 85 GTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE------------PLAPYDRIYV 152 (215)
T ss_pred CCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc------------ccCCCCEEEE
Confidence 9999999999998744 5999999999999999998765 389999999976532 1257999887
Q ss_pred cCC-CcCcHHHHHHhccCCCce
Q 015990 224 NIP-FNISTDVIKQLLPMGDIF 244 (397)
Q Consensus 224 NlP-y~i~s~il~~L~~~g~~~ 244 (397)
+.+ .++...+...|.++|.++
T Consensus 153 ~~~~~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 153 TAAGPKIPEALIDQLKEGGILV 174 (215)
T ss_pred cCCcccccHHHHHhcCcCcEEE
Confidence 754 456677778888887654
No 15
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=4.2e-13 Score=123.76 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=112.0
Q ss_pred HHHHHHhhh-cCCCChHHHHHHHHhcCC---Cccc-------------cCCCccCCCHHHHHHHHHHhcCCCCCEEEEEc
Q 015990 87 ASACIVCAR-SQDDDYHATIKALNSKGR---FPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (397)
Q Consensus 87 r~~mv~~~~-~~~~~~~~~~~~l~~~~~---~~~k-------------~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG 149 (397)
++.||+.+. +..+.++++.++|.+..+ .|.. ..|+ .+..+.+...+++.+.+.++++|||||
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG 80 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGA-TISAPHMVAMMCELIEPRPGMKILEVG 80 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCC-EechHHHHHHHHHhcCCCCCCEEEEEC
Confidence 457888887 777889999998864322 2211 1243 455688899999999999999999999
Q ss_pred CcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhcCCCCcceEee
Q 015990 150 PGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (397)
Q Consensus 150 ~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~ 223 (397)
||+|+++..+++. +++|+++|+++++++.|++++...+ +++++++|+.+... ....+|.|++
T Consensus 81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------------~~~~fD~Ii~ 148 (205)
T PRK13944 81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------------KHAPFDAIIV 148 (205)
T ss_pred cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------------cCCCccEEEE
Confidence 9999999999875 3689999999999999999886543 58999999976532 1257999998
Q ss_pred cCCC-cCcHHHHHHhccCCCce
Q 015990 224 NIPF-NISTDVIKQLLPMGDIF 244 (397)
Q Consensus 224 NlPy-~i~s~il~~L~~~g~~~ 244 (397)
+.+. ++...+...|.++|.++
T Consensus 149 ~~~~~~~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 149 TAAASTIPSALVRQLKDGGVLV 170 (205)
T ss_pred ccCcchhhHHHHHhcCcCcEEE
Confidence 8664 56677778888887653
No 16
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.47 E-value=1.2e-12 Score=121.14 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=113.7
Q ss_pred HHHHHHHHHhhh-cCCCChHHHHHHHHhcCC---Cccc-------------cCCCccCCCHHHHHHHHHHhcCCCCCEEE
Q 015990 84 KGAASACIVCAR-SQDDDYHATIKALNSKGR---FPRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVL 146 (397)
Q Consensus 84 ~~ar~~mv~~~~-~~~~~~~~~~~~l~~~~~---~~~k-------------~~GQnfl~~~~i~~~i~~~~~~~~~~~VL 146 (397)
.++|.+|++ ++ ++++.++.+.++|..... .|.. ..|+ ++..+.+..++++.+.+.++.+||
T Consensus 6 ~~~~~~~v~-~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~l~~~l~~~~~~~VL 83 (212)
T PRK00312 6 SERFARLVL-RLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQ-TISQPYMVARMTELLELKPGDRVL 83 (212)
T ss_pred HHHHHHHHH-HHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCC-eeCcHHHHHHHHHhcCCCCCCEEE
Confidence 467899999 66 888999999999975432 2211 1122 567899999999999999999999
Q ss_pred EEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeec
Q 015990 147 EIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (397)
Q Consensus 147 EIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (397)
|+|||+|+++..+++.+.+|+++|+++++++.+++++...+ +++++++|+.+... ..+.||.|+.+
T Consensus 84 eiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------------~~~~fD~I~~~ 151 (212)
T PRK00312 84 EIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP------------AYAPFDRILVT 151 (212)
T ss_pred EECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC------------cCCCcCEEEEc
Confidence 99999999999888887799999999999999999986543 79999999865421 12578998877
Q ss_pred CCC-cCcHHHHHHhccCCCce
Q 015990 225 IPF-NISTDVIKQLLPMGDIF 244 (397)
Q Consensus 225 lPy-~i~s~il~~L~~~g~~~ 244 (397)
.+. ++...+...|.++|.++
T Consensus 152 ~~~~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 152 AAAPEIPRALLEQLKEGGILV 172 (212)
T ss_pred cCchhhhHHHHHhcCCCcEEE
Confidence 543 44556666777777554
No 17
>PHA03412 putative methyltransferase; Provisional
Probab=99.42 E-value=9.2e-13 Score=122.57 Aligned_cols=102 Identities=14% Similarity=0.245 Sum_probs=82.9
Q ss_pred hcCCCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-----CCcEEEEeCCHHHHHHHHHHhc
Q 015990 110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGLVRERFA 184 (397)
Q Consensus 110 ~~~~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-----~~~V~~vE~d~~~i~~a~~~~~ 184 (397)
+.....++..|| |.++..+++.++... ..+.+|||+|||+|.++..++++ ..+|++||+|+.+++.|+++.
T Consensus 21 ~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~- 96 (241)
T PHA03412 21 EGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV- 96 (241)
T ss_pred cccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-
Confidence 334466788899 999999988876432 24679999999999999998874 358999999999999999886
Q ss_pred cCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 185 ~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
.++.++++|+...++ ...+|+||+||||...
T Consensus 97 --~~~~~~~~D~~~~~~-------------~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 97 --PEATWINADALTTEF-------------DTLFDMAISNPPFGKI 127 (241)
T ss_pred --cCCEEEEcchhcccc-------------cCCccEEEECCCCCCc
Confidence 358899999987542 2479999999999864
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.33 E-value=6e-12 Score=103.85 Aligned_cols=73 Identities=30% Similarity=0.426 Sum_probs=61.3
Q ss_pred CCCEEEEEcCcccHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhc---cCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~--~~~~V~~vE~d~~~i~~a~~~~~---~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
|+.+|||||||+|.++..+++ .+.+|+|||+|+++++.|++++. ..++++++++|+ ..... ..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-----------~~ 68 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-----------FL 68 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-----------TS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-----------cC
Confidence 578999999999999999999 68899999999999999999982 235999999999 32221 23
Q ss_pred CCcceEeecC
Q 015990 216 SGFAKVVANI 225 (397)
Q Consensus 216 ~~~d~Vv~Nl 225 (397)
+.+|+|+.+.
T Consensus 69 ~~~D~v~~~~ 78 (112)
T PF12847_consen 69 EPFDLVICSG 78 (112)
T ss_dssp SCEEEEEECS
T ss_pred CCCCEEEECC
Confidence 5799998877
No 19
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.30 E-value=5.8e-12 Score=118.09 Aligned_cols=98 Identities=20% Similarity=0.334 Sum_probs=77.6
Q ss_pred CCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhccCC---ceEEEEc
Q 015990 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID---QLKVLQE 194 (397)
Q Consensus 120 GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~g 194 (397)
|-+|-+|.-++ ..++.+....+|||+|||+|.++..++++ . ++|++||+++++++.|+++.+.++ +++++++
T Consensus 26 ~~~~~~DaiLL---~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~ 102 (248)
T COG4123 26 GFRYGTDAILL---AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA 102 (248)
T ss_pred ccccccHHHHH---HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehh
Confidence 33455555444 34445555789999999999999999998 4 799999999999999999988754 8999999
Q ss_pred cccccchhhhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
|+.++.... ....||.|++||||+-.
T Consensus 103 Di~~~~~~~----------~~~~fD~Ii~NPPyf~~ 128 (248)
T COG4123 103 DIKEFLKAL----------VFASFDLIICNPPYFKQ 128 (248)
T ss_pred hHHHhhhcc----------cccccCEEEeCCCCCCC
Confidence 999885431 22469999999999654
No 20
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=9.8e-11 Score=114.91 Aligned_cols=145 Identities=13% Similarity=0.131 Sum_probs=106.2
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHhcC---CCccc---------------cCCC--ccCCCHHHHHHHHHHhcCCCCCEEE
Q 015990 87 ASACIVCARSQDDDYHATIKALNSKG---RFPRK---------------SLGQ--HYMLNSEINDQLAAAAAVQEGDIVL 146 (397)
Q Consensus 87 r~~mv~~~~~~~~~~~~~~~~l~~~~---~~~~k---------------~~GQ--nfl~~~~i~~~i~~~~~~~~~~~VL 146 (397)
|+.|++...+.++++ ++.++|.+.. +.|.. .-|. .+..+|.+...+++.++++++++||
T Consensus 7 ~~~lv~~l~~~gv~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~i~~g~~VL 85 (322)
T PRK13943 7 REKLFWILKKYGISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVL 85 (322)
T ss_pred HHHHHHHHHHcCCcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcCCCCCCEEE
Confidence 466887544777877 8888886432 12211 1122 3566899999999999999999999
Q ss_pred EEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhHHhhhcCCCCcceE
Q 015990 147 EIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (397)
Q Consensus 147 EIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~V 221 (397)
|||||+|+++..+++.. ++|+++|+++++++.|++++...+ +++++++|+.+.... ...+|+|
T Consensus 86 DIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~------------~~~fD~I 153 (322)
T PRK13943 86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE------------FAPYDVI 153 (322)
T ss_pred EEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc------------cCCccEE
Confidence 99999999999999863 369999999999999999876543 799999998765321 2468998
Q ss_pred eecCCC-cCcHHHHHHhccCCCce
Q 015990 222 VANIPF-NISTDVIKQLLPMGDIF 244 (397)
Q Consensus 222 v~NlPy-~i~s~il~~L~~~g~~~ 244 (397)
+.+... ++...++..|.++|.++
T Consensus 154 i~~~g~~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 154 FVTVGVDEVPETWFTQLKEGGRVI 177 (322)
T ss_pred EECCchHHhHHHHHHhcCCCCEEE
Confidence 875332 33445677777777653
No 21
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.26 E-value=4.4e-11 Score=107.77 Aligned_cols=82 Identities=29% Similarity=0.353 Sum_probs=68.5
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhhHHhh
Q 015990 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 133 i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~~~~~ 211 (397)
+.+.+...++++|||+|||+|.++..+++.+.+|+++|+|+++++.+++++..++ +++++.+|+.+..
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----------- 79 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV----------- 79 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-----------
Confidence 4444455567899999999999999999988899999999999999999986544 7888999986642
Q ss_pred hcCCCCcceEeecCCCc
Q 015990 212 RKSSSGFAKVVANIPFN 228 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~ 228 (397)
.+.+|.|++|+||.
T Consensus 80 ---~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 80 ---RGKFDVILFNPPYL 93 (179)
T ss_pred ---CCcccEEEECCCCC
Confidence 24799999999995
No 22
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.26 E-value=2.2e-11 Score=109.02 Aligned_cols=87 Identities=23% Similarity=0.406 Sum_probs=68.5
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhh
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLS 207 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~ 207 (397)
.+++.+...++.+|||+|||+|.++..+++.+. +|+++|+|+++++.+++++..++ +++++++|..+..
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~------- 94 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL------- 94 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-------
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-------
Confidence 455555544778999999999999999999855 59999999999999999988764 4999999987642
Q ss_pred HHhhhcCCCCcceEeecCCCcCcH
Q 015990 208 LFERRKSSSGFAKVVANIPFNIST 231 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i~s 231 (397)
....+|.|++|||++...
T Consensus 95 ------~~~~fD~Iv~NPP~~~~~ 112 (170)
T PF05175_consen 95 ------PDGKFDLIVSNPPFHAGG 112 (170)
T ss_dssp ------CTTCEEEEEE---SBTTS
T ss_pred ------cccceeEEEEccchhccc
Confidence 236899999999986543
No 23
>PRK14967 putative methyltransferase; Provisional
Probab=99.25 E-value=4.1e-11 Score=111.84 Aligned_cols=92 Identities=24% Similarity=0.335 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhh
Q 015990 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS 203 (397)
Q Consensus 126 ~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~ 203 (397)
+..++..++....+.++++|||+|||+|.++..+++.+. +|+++|+|+.+++.+++++...+ +++++++|+.+..
T Consensus 21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~--- 97 (223)
T PRK14967 21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV--- 97 (223)
T ss_pred cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc---
Confidence 445555566666677889999999999999999998765 99999999999999999886544 6889999986531
Q ss_pred hhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 204 HMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
....+|.|++|+||...
T Consensus 98 ----------~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 98 ----------EFRPFDVVVSNPPYVPA 114 (223)
T ss_pred ----------cCCCeeEEEECCCCCCC
Confidence 22579999999999754
No 24
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.24 E-value=5.2e-11 Score=119.54 Aligned_cols=101 Identities=18% Similarity=0.338 Sum_probs=74.8
Q ss_pred cCCCccCCCHHH------HHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC
Q 015990 118 SLGQHYMLNSEI------NDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID 187 (397)
Q Consensus 118 ~~GQnfl~~~~i------~~~i~~~~--~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~ 187 (397)
.+|.+|.+++.+ .+.+++.+ .+.++.+|||+|||+|.++..++.. +.+|+|+|+|+++++.|+++...++
T Consensus 220 F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g 299 (423)
T PRK14966 220 FYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG 299 (423)
T ss_pred ecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 456666655322 23333332 2345679999999999999998874 5799999999999999999987654
Q ss_pred -ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 188 -~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
+++++++|+.+.... ..+++|.|++||||.-
T Consensus 300 ~rV~fi~gDl~e~~l~-----------~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 300 ARVEFAHGSWFDTDMP-----------SEGKWDIIVSNPPYIE 331 (423)
T ss_pred CcEEEEEcchhccccc-----------cCCCccEEEECCCCCC
Confidence 799999998764321 1246999999999953
No 25
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=4.3e-11 Score=112.10 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=85.0
Q ss_pred cCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhccCC--ceEEEE
Q 015990 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQ 193 (397)
Q Consensus 118 ~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~ 193 (397)
++|++ ...-+.+++.+...+|.+|||+|||||-++..+++.. ++|+|+|+++.|++.++++....+ ++++++
T Consensus 32 S~g~~----~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~ 107 (238)
T COG2226 32 SFGLH----RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107 (238)
T ss_pred cCcch----HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEE
Confidence 55664 4455667777777789999999999999999999985 699999999999999999987632 699999
Q ss_pred ccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcH-------HHHHHhccCCC
Q 015990 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGD 242 (397)
Q Consensus 194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s-------~il~~L~~~g~ 242 (397)
+||+++++++ +.||.|....-....+ ++.+.|+++|.
T Consensus 108 ~dAe~LPf~D------------~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 108 GDAENLPFPD------------NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGR 151 (238)
T ss_pred echhhCCCCC------------CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeE
Confidence 9999999753 6788887654443322 44556666653
No 26
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.24 E-value=6.6e-11 Score=108.56 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchh
Q 015990 127 SEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (397)
Q Consensus 127 ~~i~~~i~~~~~-~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~ 202 (397)
..+.+.+++.+. ..++.+|||+|||+|.++..++.+ +.+|++||+|+++++.+++|++.++ +++++++|+.+....
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~ 117 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ 117 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh
Confidence 345555666553 246789999999999999876555 5699999999999999999987654 799999998654210
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCCcC--cHHHHHHhccCC
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMG 241 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~s~il~~L~~~g 241 (397)
....+|+|+.||||.. ...++..|...+
T Consensus 118 -----------~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~ 147 (199)
T PRK10909 118 -----------PGTPHNVVFVDPPFRKGLLEETINLLEDNG 147 (199)
T ss_pred -----------cCCCceEEEECCCCCCChHHHHHHHHHHCC
Confidence 1246899999999853 234555555543
No 27
>PHA03411 putative methyltransferase; Provisional
Probab=99.24 E-value=3.3e-11 Score=114.60 Aligned_cols=95 Identities=15% Similarity=0.282 Sum_probs=77.6
Q ss_pred ccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCCceEEEEc
Q 015990 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQE 194 (397)
Q Consensus 117 k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~g 194 (397)
...|| |.+++.++..++. ....+.+|||+|||+|.++..++.+ +.+|+++|+|+.+++.+++++ ++++++++
T Consensus 43 ~~~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~ 116 (279)
T PHA03411 43 GGSGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITS 116 (279)
T ss_pred cCcee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEEC
Confidence 34688 8999999866542 3345579999999999999988875 469999999999999999875 47899999
Q ss_pred cccccchhhhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
|+.++.. ...+|.|++|+||...
T Consensus 117 D~~e~~~-------------~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 117 DVFEFES-------------NEKFDVVISNPPFGKI 139 (279)
T ss_pred chhhhcc-------------cCCCcEEEEcCCcccc
Confidence 9987642 2579999999999764
No 28
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.23 E-value=5.2e-11 Score=117.63 Aligned_cols=96 Identities=24% Similarity=0.263 Sum_probs=83.7
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccc
Q 015990 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH 200 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~ 200 (397)
-.+++.+...+++.+.++++++|||+|||+|.++..++..+.+++|+|+|++|++.++.|++..+ +++++++|+.+++
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP 243 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence 45678999999999999999999999999999999988889999999999999999999986543 6889999999876
Q ss_pred hhhhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 201 IRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
.. .+.+|.|++|+||...
T Consensus 244 ~~------------~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 244 LS------------SESVDAIATDPPYGRS 261 (329)
T ss_pred cc------------cCCCCEEEECCCCcCc
Confidence 42 2578999999999764
No 29
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.21 E-value=2.9e-11 Score=100.62 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=64.7
Q ss_pred CCEEEEEcCcccHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~-~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
|.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.++.++... ++++++++|+.+.... ...+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----------~~~~~ 70 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP----------LPDGK 70 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT----------CTTT-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh----------ccCce
Confidence 5689999999999999999998 89999999999999999998764 4799999999877411 12468
Q ss_pred cceEeecCCCcCc
Q 015990 218 FAKVVANIPFNIS 230 (397)
Q Consensus 218 ~d~Vv~NlPy~i~ 230 (397)
+|+|++|+||.-.
T Consensus 71 ~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 71 FDLIVTNPPYGPR 83 (117)
T ss_dssp EEEEEE--STTSB
T ss_pred eEEEEECCCCccc
Confidence 9999999999643
No 30
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.21 E-value=1e-10 Score=111.98 Aligned_cols=119 Identities=20% Similarity=0.332 Sum_probs=92.8
Q ss_pred CccccCCCccCCCH--HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccCCceE
Q 015990 114 FPRKSLGQHYMLNS--EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLK 190 (397)
Q Consensus 114 ~~~k~~GQnfl~~~--~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~~~v~ 190 (397)
+-.+.||++|+.+. .....++..+.+.++.+|||||||+|..+..+++. +++|+|+|+++.+++.|+++....++++
T Consensus 23 ~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~ 102 (263)
T PTZ00098 23 AYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIE 102 (263)
T ss_pred hHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceE
Confidence 44567899999885 34778888899999999999999999999999875 6799999999999999999876556899
Q ss_pred EEEccccccchhhhhhhHHhhhcCCCCcceEeecCC-CcCc--------HHHHHHhccCCCce
Q 015990 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIS--------TDVIKQLLPMGDIF 244 (397)
Q Consensus 191 ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP-y~i~--------s~il~~L~~~g~~~ 244 (397)
++.+|+.+.++. .+.||+|+++.. +++. ..+.+.|+++|.++
T Consensus 103 ~~~~D~~~~~~~------------~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 103 FEANDILKKDFP------------ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred EEECCcccCCCC------------CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999876542 357999998532 2333 23445666776554
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.19 E-value=8.6e-11 Score=107.55 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=68.7
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhhHH
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLF 209 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~~~ 209 (397)
..+++.+...++.+|||+|||+|.++..+++++.+|+|+|+++.+++.++++....+ ++++..+|+...++
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-------- 91 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-------- 91 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc--------
Confidence 355566666667899999999999999999999999999999999999988775433 56777777765432
Q ss_pred hhhcCCCCcceEeecCCCcC
Q 015990 210 ERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 210 ~~~~~~~~~d~Vv~NlPy~i 229 (397)
.+.+|.|+++.+++.
T Consensus 92 -----~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 92 -----NEDYDFIFSTVVFMF 106 (195)
T ss_pred -----cCCCCEEEEeccccc
Confidence 246899999988754
No 32
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.18 E-value=1.2e-10 Score=116.49 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC-----ceEEEEccccccchh
Q 015990 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHIR 202 (397)
Q Consensus 130 ~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~-----~v~ii~gD~~~~~~~ 202 (397)
.+.+++.++...+.+|||+|||+|.++..++++ ..+|+++|+|+.+++.++++++.+. +++++.+|+.+..
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-- 294 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-- 294 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC--
Confidence 345677776655679999999999999999987 4699999999999999999986442 6788999986531
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
....+|.|++|+||+.
T Consensus 295 -----------~~~~fDlIlsNPPfh~ 310 (378)
T PRK15001 295 -----------EPFRFNAVLCNPPFHQ 310 (378)
T ss_pred -----------CCCCEEEEEECcCccc
Confidence 1247999999999974
No 33
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.18 E-value=1.3e-10 Score=119.29 Aligned_cols=105 Identities=22% Similarity=0.243 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhh
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~ 204 (397)
+.+++.+++.+.+.++++|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++..++ +++++.+|+.+......
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 4556667777777888999999999999999999998999999999999999999986543 79999999976421000
Q ss_pred hhhHHhhhcCCCCcceEeecCCCcCcHHHHHHhcc
Q 015990 205 MLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239 (397)
Q Consensus 205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~ 239 (397)
.....+|+|+.|+||.-..+++..+..
T Consensus 363 --------~~~~~fD~Vi~dPPr~g~~~~~~~l~~ 389 (443)
T PRK13168 363 --------WALGGFDKVLLDPPRAGAAEVMQALAK 389 (443)
T ss_pred --------hhcCCCCEEEECcCCcChHHHHHHHHh
Confidence 012468999999999876777766654
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.18 E-value=1.6e-10 Score=105.94 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=69.5
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHH
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLF 209 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~ 209 (397)
.+++.+...++.+|||+|||+|..+..|++++.+|+|+|+++.+++.++++.... .++++..+|+.+.++
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-------- 92 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-------- 92 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc--------
Confidence 4455556667789999999999999999999999999999999999999887654 368889999877643
Q ss_pred hhhcCCCCcceEeecCCCcC
Q 015990 210 ERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 210 ~~~~~~~~~d~Vv~NlPy~i 229 (397)
.+.+|.|+++..++.
T Consensus 93 -----~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 93 -----DGEYDFILSTVVLMF 107 (197)
T ss_pred -----CCCcCEEEEecchhh
Confidence 246999999877543
No 35
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.18 E-value=1.1e-10 Score=114.70 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=79.3
Q ss_pred CCHHHHHHH----HHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccc
Q 015990 125 LNSEINDQL----AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK 198 (397)
Q Consensus 125 ~~~~i~~~i----~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~ 198 (397)
.++.+.+.+ .+++...++++|||+|||+|.++..+++.+++|+|+|+++.+++.|++++..++ +++++++|+.+
T Consensus 153 ~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~ 232 (315)
T PRK03522 153 TNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQ 232 (315)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHH
Confidence 444444444 445554457899999999999999999999999999999999999999986554 79999999977
Q ss_pred cchhhhhhhHHhhhcCCCCcceEeecCCCcC-cHHHHHHhcc
Q 015990 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLP 239 (397)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i-~s~il~~L~~ 239 (397)
+... ....+|.|+.|||+.- ...++..+..
T Consensus 233 ~~~~-----------~~~~~D~Vv~dPPr~G~~~~~~~~l~~ 263 (315)
T PRK03522 233 FATA-----------QGEVPDLVLVNPPRRGIGKELCDYLSQ 263 (315)
T ss_pred HHHh-----------cCCCCeEEEECCCCCCccHHHHHHHHH
Confidence 6321 1246899999999874 3445455444
No 36
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.16 E-value=6e-11 Score=111.55 Aligned_cols=106 Identities=19% Similarity=0.340 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccch
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~ 201 (397)
....+++++.+...++.+|||+|||||.++..+++. .++|+|+|++++|++.|+++.... .+++++++|+.++++
T Consensus 33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 344456677778888999999999999999999986 358999999999999999998654 389999999999987
Q ss_pred hhhhhhHHhhhcCCCCcceEeecCCCc-------CcHHHHHHhccCCCce
Q 015990 202 RSHMLSLFERRKSSSGFAKVVANIPFN-------ISTDVIKQLLPMGDIF 244 (397)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~-------i~s~il~~L~~~g~~~ 244 (397)
. .+.+|.|++..-++ ...++.+.|+++|.+.
T Consensus 113 ~------------d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 113 P------------DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp -------------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred C------------CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 4 26788887554321 2235677777877653
No 37
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.16 E-value=1.5e-10 Score=109.79 Aligned_cols=103 Identities=19% Similarity=0.259 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhh
Q 015990 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (397)
Q Consensus 126 ~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~ 205 (397)
...+.+.+++.+...++.+|||+|||+|.++..+++.+.+|+++|+++.|++.++++.. ...++++|+.+.++.
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~~--- 100 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLPLA--- 100 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCcCC---
Confidence 34566777787776667899999999999999999989999999999999999998753 356889999887642
Q ss_pred hhHHhhhcCCCCcceEeecCCCcCcH-------HHHHHhccCCCc
Q 015990 206 LSLFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDI 243 (397)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~NlPy~i~s-------~il~~L~~~g~~ 243 (397)
.+.+|+|++|.++++.. .+.+.|.++|.+
T Consensus 101 ---------~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l 136 (251)
T PRK10258 101 ---------TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVV 136 (251)
T ss_pred ---------CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEE
Confidence 35799999998876543 334455555544
No 38
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.14 E-value=3.3e-10 Score=109.68 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=65.3
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhh
Q 015990 137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 137 ~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~ 211 (397)
+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..++ +++++++|+.+..
T Consensus 117 ~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~----------- 185 (284)
T TIGR03533 117 LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL----------- 185 (284)
T ss_pred hccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-----------
Confidence 33345679999999999999999986 4699999999999999999987543 6999999986531
Q ss_pred hcCCCCcceEeecCCCcC
Q 015990 212 RKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i 229 (397)
....+|.|++||||.-
T Consensus 186 --~~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 186 --PGRKYDLIVSNPPYVD 201 (284)
T ss_pred --CCCCccEEEECCCCCC
Confidence 1246999999999943
No 39
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.14 E-value=3.8e-10 Score=105.49 Aligned_cols=92 Identities=14% Similarity=0.258 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccc
Q 015990 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH 200 (397)
Q Consensus 126 ~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~ 200 (397)
+....+.+++.+.+.++++|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++... ++++++++|+.+.+
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 4455677888888888999999999999999999875 359999999999999999987543 48999999998875
Q ss_pred hhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 201 IRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
+. .+.+|.|+++..++.
T Consensus 110 ~~------------~~~fD~V~~~~~l~~ 126 (231)
T TIGR02752 110 FD------------DNSFDYVTIGFGLRN 126 (231)
T ss_pred CC------------CCCccEEEEeccccc
Confidence 42 357899998766543
No 40
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.9e-10 Score=111.09 Aligned_cols=73 Identities=25% Similarity=0.453 Sum_probs=60.8
Q ss_pred EEEEEcCcccHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~--~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
+|||+|||+|.++..++.... +|+|+|+|+++++.|++|...++ ++.++.+|..+- ..+++|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--------------~~~~fD 178 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--------------LRGKFD 178 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--------------cCCcee
Confidence 799999999999999999754 99999999999999999998764 566777775543 124899
Q ss_pred eEeecCCCcCc
Q 015990 220 KVVANIPFNIS 230 (397)
Q Consensus 220 ~Vv~NlPy~i~ 230 (397)
+||+||||=-.
T Consensus 179 lIVsNPPYip~ 189 (280)
T COG2890 179 LIVSNPPYIPA 189 (280)
T ss_pred EEEeCCCCCCC
Confidence 99999998443
No 41
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.14 E-value=8.2e-10 Score=100.15 Aligned_cols=108 Identities=16% Similarity=0.213 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEcccccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC 199 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~ 199 (397)
++.+.+...+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++... ++++++.+|+...
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~ 93 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE 93 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh
Confidence 556677777888888888999999999999999999986 358999999999999999987644 3789999987421
Q ss_pred chhhhhhhHHhhhcCCCCcceEeecCCCcCcHH----HHHHhccCCCcee
Q 015990 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTD----VIKQLLPMGDIFS 245 (397)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~----il~~L~~~g~~~~ 245 (397)
..+.+|+|+++........ +...|.++|.++.
T Consensus 94 --------------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 94 --------------LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred --------------cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEE
Confidence 1246899987754332233 3445666665543
No 42
>PRK14968 putative methyltransferase; Provisional
Probab=99.13 E-value=5.6e-10 Score=100.52 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=69.9
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--c--eEEEEccccccchhhhhh
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~--v~ii~gD~~~~~~~~~~~ 206 (397)
..+++.+...++++|||+|||+|.++..++..+.+|+++|+++++++.+++++..++ + +.++++|+.+..
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------ 86 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF------ 86 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc------
Confidence 345555555778899999999999999999999999999999999999998875433 2 889999986632
Q ss_pred hHHhhhcCCCCcceEeecCCCcC
Q 015990 207 SLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
....+|.|++|+||..
T Consensus 87 -------~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 87 -------RGDKFDVILFNPPYLP 102 (188)
T ss_pred -------cccCceEEEECCCcCC
Confidence 1237999999999865
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=99.13 E-value=3.5e-10 Score=112.26 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcC-----CCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEcccc
Q 015990 127 SEINDQLAAAAAV-----QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (397)
Q Consensus 127 ~~i~~~i~~~~~~-----~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~ 197 (397)
..+++.+++.+.+ .++++|||||||+|.++..+++. +++|+|||+++.+++.++++.... ++++++.+|+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 3566777888877 67889999999999999999986 789999999999999999887543 37999999998
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCCC-cCc------HHHHHHhccCCCce
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF-NIS------TDVIKQLLPMGDIF 244 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy-~i~------s~il~~L~~~g~~~ 244 (397)
+.++. .+.||+|+++... ++. .++.+.|+++|.++
T Consensus 179 ~~~~~------------~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 179 NQPFE------------DGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRII 220 (340)
T ss_pred cCCCC------------CCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEE
Confidence 87653 3679999987543 222 24555666776553
No 44
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.12 E-value=2.4e-10 Score=100.12 Aligned_cols=79 Identities=20% Similarity=0.411 Sum_probs=64.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHH-c--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhhhcC
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLN-A--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~-~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
+++.+|||+|||+|.++..+++ . +.+++|||+|++|++.|+++++.. ++++++++|+.+++.. + .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~--------~ 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--L--------E 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--S--------S
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--c--------C
Confidence 4678999999999999999994 3 679999999999999999987643 4899999999996411 0 1
Q ss_pred CCCcceEeecCCCcC
Q 015990 215 SSGFAKVVANIPFNI 229 (397)
Q Consensus 215 ~~~~d~Vv~NlPy~i 229 (397)
..+|+|+++.+++.
T Consensus 72 -~~~D~I~~~~~l~~ 85 (152)
T PF13847_consen 72 -EKFDIIISNGVLHH 85 (152)
T ss_dssp -TTEEEEEEESTGGG
T ss_pred -CCeeEEEEcCchhh
Confidence 57999999977644
No 45
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.11 E-value=5.7e-10 Score=106.72 Aligned_cols=88 Identities=15% Similarity=0.249 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhcc-----CCceEEEEccccccc
Q 015990 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCH 200 (397)
Q Consensus 129 i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~~vE~d~~~i~~a~~~~~~-----~~~v~ii~gD~~~~~ 200 (397)
..+.+++.+.+.++++|||+|||+|.++..+++. + ++|+|+|++++|++.|+++... ..+++++++|+.+++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 3344556677788999999999999999999885 3 5899999999999999877531 247999999999887
Q ss_pred hhhhhhhHHhhhcCCCCcceEeecCCCc
Q 015990 201 IRSHMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
+. .+.+|.|+++.-++
T Consensus 141 ~~------------~~sfD~V~~~~~l~ 156 (261)
T PLN02233 141 FD------------DCYFDAITMGYGLR 156 (261)
T ss_pred CC------------CCCEeEEEEecccc
Confidence 53 35799998875543
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.11 E-value=1e-09 Score=91.74 Aligned_cols=106 Identities=20% Similarity=0.303 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchh
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR 202 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~ 202 (397)
..+...+++.+.+.++++|||+|||+|.++..+++. +.+|+++|+++.+++.+++++... ++++++.+|+......
T Consensus 5 ~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 5 REVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence 456677888888888889999999999999999986 468999999999999999887654 4789999998753211
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCCcCcHH----HHHHhccCCCc
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPFNISTD----VIKQLLPMGDI 243 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~----il~~L~~~g~~ 243 (397)
..+.+|.|+...+...... +.+.|.++|.+
T Consensus 85 -----------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l 118 (124)
T TIGR02469 85 -----------SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRI 118 (124)
T ss_pred -----------hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEE
Confidence 1257899887765433233 33445555544
No 47
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.11 E-value=1.3e-10 Score=107.55 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=91.7
Q ss_pred ccccCCCccCCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC-ceE
Q 015990 115 PRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLK 190 (397)
Q Consensus 115 ~~k~~GQnfl~~~~i~~~i~~~~~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ 190 (397)
+.-.+.+--.+++.-...|.+.+.. -++.+|||||||-|.++..||+.|++|+|+|+++++++.|+......+ +++
T Consensus 30 ~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~ 109 (243)
T COG2227 30 PEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNID 109 (243)
T ss_pred CCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccccc
Confidence 3334444333444444455555443 467899999999999999999999999999999999999998876654 555
Q ss_pred EEEccccccchhhhhhhHHhhhcCCCCcceEeecC-------CCcCcHHHHHHhccCCCceeeeE---------EeeeHH
Q 015990 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI-------PFNISTDVIKQLLPMGDIFSEVV---------LLLQEE 254 (397)
Q Consensus 191 ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl-------Py~i~s~il~~L~~~g~~~~~~~---------lm~Qke 254 (397)
+...+++++.. .+++||+|++.= |-.+...+...++|+|.++.+.. ..+.-|
T Consensus 110 y~~~~~edl~~------------~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae 177 (243)
T COG2227 110 YRQATVEDLAS------------AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAE 177 (243)
T ss_pred chhhhHHHHHh------------cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHH
Confidence 66666655532 236899988762 11222334456667776653322 223333
Q ss_pred HHHHHccCCCCCCCccc
Q 015990 255 TALRLVEPSLRTSEYRP 271 (397)
Q Consensus 255 va~rl~~a~pg~k~y~~ 271 (397)
..-|+. +.|+++|+.
T Consensus 178 ~vl~~v--P~gTH~~~k 192 (243)
T COG2227 178 YVLRIV--PKGTHDYRK 192 (243)
T ss_pred HHHHhc--CCcchhHHH
Confidence 344444 346666654
No 48
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.10 E-value=2.5e-10 Score=108.62 Aligned_cols=97 Identities=25% Similarity=0.301 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhh
Q 015990 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 129 i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~ 206 (397)
....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+++.|++.|+++ +++++++|+.++..
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~----- 86 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWKP----- 86 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCCC-----
Confidence 3456778888888899999999999999999987 67999999999999999763 58899999876531
Q ss_pred hHHhhhcCCCCcceEeecCCCcCcH-------HHHHHhccCCCc
Q 015990 207 SLFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDI 243 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~s-------~il~~L~~~g~~ 243 (397)
.+.||+|++|..++... .+.+.|.++|.+
T Consensus 87 --------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l 122 (255)
T PRK14103 87 --------KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWI 122 (255)
T ss_pred --------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEE
Confidence 25799999998775543 344556676654
No 49
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.10 E-value=4.5e-10 Score=111.38 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=68.2
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhh
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS 207 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~ 207 (397)
+.+++.+......+|||+|||+|.++..++++. .+|+++|+|+.+++.++++++.++ ..+++.+|+...
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-------- 257 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-------- 257 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--------
Confidence 455666655555689999999999999999873 589999999999999999987654 556778887542
Q ss_pred HHhhhcCCCCcceEeecCCCcC
Q 015990 208 LFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
..+.+|.|++|+||+.
T Consensus 258 ------~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 258 ------IKGRFDMIISNPPFHD 273 (342)
T ss_pred ------cCCCccEEEECCCccC
Confidence 1257999999999974
No 50
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.09 E-value=5.4e-10 Score=101.59 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=71.6
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhHHhhhcC
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
+.++.+|||+|||+|.++..++.. +++|+++|+++++++.|+++.+..+ +++++++|+.+...
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~------------- 109 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ------------- 109 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-------------
Confidence 445789999999999999999863 6799999999999999999886653 69999999988642
Q ss_pred CCCcceEeecCCC---cCcHHHHHHhccCCCce
Q 015990 215 SSGFAKVVANIPF---NISTDVIKQLLPMGDIF 244 (397)
Q Consensus 215 ~~~~d~Vv~NlPy---~i~s~il~~L~~~g~~~ 244 (397)
.+++|.|++|.-. .+...+.+.|.++|.++
T Consensus 110 ~~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv 142 (187)
T PRK00107 110 EEKFDVVTSRAVASLSDLVELCLPLLKPGGRFL 142 (187)
T ss_pred CCCccEEEEccccCHHHHHHHHHHhcCCCeEEE
Confidence 2579999987411 22234555667777653
No 51
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=3.8e-10 Score=107.42 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=77.0
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhh
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS 207 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~ 207 (397)
+.+++.+. .++.+|||+|||+|.++..+++.+.+|+++|++++|++.|+++.... ++++++++|+.++...
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~----- 108 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH----- 108 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-----
Confidence 45666665 45679999999999999999999999999999999999999987653 3789999999876321
Q ss_pred HHhhhcCCCCcceEeecCCCcCc-------HHHHHHhccCCCc
Q 015990 208 LFERRKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI 243 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i~-------s~il~~L~~~g~~ 243 (397)
..+.+|+|+++..++.. ..+.+.|+++|.+
T Consensus 109 ------~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 109 ------LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGAL 145 (255)
T ss_pred ------cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEE
Confidence 23578999987664322 2344555666654
No 52
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=6.5e-10 Score=107.01 Aligned_cols=124 Identities=22% Similarity=0.282 Sum_probs=85.2
Q ss_pred ccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC-c--eEEE
Q 015990 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q--LKVL 192 (397)
Q Consensus 117 k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~-~--v~ii 192 (397)
-.||+.+--...+.-+.++... .++.+|||+|||+|.|++..++.|+ +|+|+|+|+-+++.+++|...|+ + ++.-
T Consensus 139 lAFGTG~HpTT~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217 (300)
T ss_pred cccCCCCChhHHHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcc
Confidence 3466655544444444555443 4789999999999999999999987 59999999999999999998764 2 2222
Q ss_pred EccccccchhhhhhhHHhhhcCCCCcceEeecCCC----cCcHHHHHHhccCCCceeeeEEeeeHH
Q 015990 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF----NISTDVIKQLLPMGDIFSEVVLLLQEE 254 (397)
Q Consensus 193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy----~i~s~il~~L~~~g~~~~~~~lm~Qke 254 (397)
..+..+.. ...++|+||+|+=- ....++...++++|.++.+..+--|.+
T Consensus 218 ~~~~~~~~-------------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~ 270 (300)
T COG2264 218 GFLLLEVP-------------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAE 270 (300)
T ss_pred cccchhhc-------------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHH
Confidence 23322221 23589999999722 223455667778887777666555544
No 53
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.08 E-value=5.7e-10 Score=109.21 Aligned_cols=106 Identities=24% Similarity=0.352 Sum_probs=76.0
Q ss_pred CccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH---------cCCcEEEEeCCHHHHHHHHHHhc
Q 015990 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---------AGATVLAIEKDQHMVGLVRERFA 184 (397)
Q Consensus 114 ~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~---------~~~~V~~vE~d~~~i~~a~~~~~ 184 (397)
..++..|| |.++..+++.|++.+...++++|+|..||+|.+...+.+ ...+++|+|+|+.++..++.++.
T Consensus 20 ~~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 20 ESRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp CTTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred Hhccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 45677899 889999999999999988999999999999999877766 35689999999999999988764
Q ss_pred cCC----ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 185 SID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 185 ~~~----~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
-.+ +..+..+|.+..+... ....+|+|++||||...
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~~----------~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKFI----------KNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSCT----------ST--EEEEEEE--CTCE
T ss_pred hhccccccccccccccccccccc----------cccccccccCCCCcccc
Confidence 332 4568999987664321 13579999999999755
No 54
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.07 E-value=5.7e-10 Score=112.10 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=79.2
Q ss_pred cCCCHHHHHHHHH----HhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccc
Q 015990 123 YMLNSEINDQLAA----AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (397)
Q Consensus 123 fl~~~~i~~~i~~----~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~ 196 (397)
|-++..+.+.+.+ .+...++.+|||+|||+|.++..++..+.+|+|||+|+.+++.|++|.+.++ +++++.+|+
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~ 290 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS 290 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 3455566655544 3443456799999999999999999988999999999999999999986654 899999999
Q ss_pred cccchhhhhhhHHhhhcCCCCcceEeecCCCcC-cHHHHHHhc
Q 015990 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL 238 (397)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i-~s~il~~L~ 238 (397)
.++... ....+|+|+.|||+.- ...++..+.
T Consensus 291 ~~~~~~-----------~~~~~D~vi~DPPr~G~~~~~l~~l~ 322 (374)
T TIGR02085 291 AKFATA-----------QMSAPELVLVNPPRRGIGKELCDYLS 322 (374)
T ss_pred HHHHHh-----------cCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 765311 1135899999999963 344545444
No 55
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.07 E-value=6.5e-10 Score=105.78 Aligned_cols=99 Identities=19% Similarity=0.342 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhh
Q 015990 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 129 i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~ 206 (397)
..+.++..+.+.++++|||||||+|.++..+++. +++|+|+|+++.|++.|++++ ++++++.+|+.++..
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~~----- 90 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQP----- 90 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccCC-----
Confidence 4556777778888899999999999999999986 579999999999999999875 468899999876532
Q ss_pred hHHhhhcCCCCcceEeecCCCcCcH-------HHHHHhccCCCc
Q 015990 207 SLFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDI 243 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~s-------~il~~L~~~g~~ 243 (397)
...+|+|++|..+++.. .+.+.|.++|.+
T Consensus 91 --------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~ 126 (258)
T PRK01683 91 --------PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVL 126 (258)
T ss_pred --------CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEE
Confidence 25799999998875442 234445566643
No 56
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.06 E-value=8.5e-10 Score=104.95 Aligned_cols=93 Identities=22% Similarity=0.231 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh
Q 015990 127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 127 ~~i~~~i~~~~~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~ 203 (397)
..+++.++..+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++|+..++ ++++++|+.+.....
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~D~~~~l~~~ 149 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-GTVHEGDLYDALPTA 149 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CEEEEeechhhcchh
Confidence 3444555554432 23458999999999999999875 4589999999999999999987654 688999987642110
Q ss_pred hhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 204 HMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
..+.+|+|++|+||.-.
T Consensus 150 ----------~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 150 ----------LRGRVDILAANAPYVPT 166 (251)
T ss_pred ----------cCCCEeEEEECCCCCCc
Confidence 12469999999999643
No 57
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.05 E-value=2.9e-10 Score=103.20 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhh
Q 015990 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (397)
Q Consensus 130 ~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~ 207 (397)
...++..+.+....+|.|+|||+|..|..|+++ ++.|+|||-|++|++.|++++ +++++..+|+.++..
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~p------ 89 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWKP------ 89 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcCC------
Confidence 346777788888899999999999999999998 789999999999999998876 689999999998854
Q ss_pred HHhhhcCCCCcceEeecCCCcCcH-------HHHHHhccCCCc
Q 015990 208 LFERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGDI 243 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i~s-------~il~~L~~~g~~ 243 (397)
....|++++|-.+++.. .++..|.++|.+
T Consensus 90 -------~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~L 125 (257)
T COG4106 90 -------EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVL 125 (257)
T ss_pred -------CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceE
Confidence 25689999998777654 244556666654
No 58
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.05 E-value=6.4e-10 Score=100.64 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=67.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
++++|||+|||+|.++..++.. +++|+|||.|+.+++.++++.+.. ++++++++|+.++.. .+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-------------~~ 108 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-------------EE 108 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-------------cC
Confidence 4789999999999999998875 458999999999999999887654 379999999987631 25
Q ss_pred CcceEeecCCCcCcHH----HHHHhccCCCce
Q 015990 217 GFAKVVANIPFNISTD----VIKQLLPMGDIF 244 (397)
Q Consensus 217 ~~d~Vv~NlPy~i~s~----il~~L~~~g~~~ 244 (397)
.+|+|++|. +..... +.+.|.++|.++
T Consensus 109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred CccEEEehh-hhCHHHHHHHHHHhcCCCCEEE
Confidence 799999985 322222 333455666543
No 59
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=8.8e-10 Score=105.61 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=71.0
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhh
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~ 206 (397)
+.+++.++...+.+|||+|||.|.++..+++.. .+|+-+|+|..+++.+++|+..++ +..++..|..+-
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------- 220 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------- 220 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------
Confidence 467777777767799999999999999999974 599999999999999999998763 446777776543
Q ss_pred hHHhhhcCCCCcceEeecCCCcCcH
Q 015990 207 SLFERRKSSSGFAKVVANIPFNIST 231 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~s 231 (397)
..++||.||+||||+-..
T Consensus 221 -------v~~kfd~IisNPPfh~G~ 238 (300)
T COG2813 221 -------VEGKFDLIISNPPFHAGK 238 (300)
T ss_pred -------ccccccEEEeCCCccCCc
Confidence 124899999999997544
No 60
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.04 E-value=2.4e-09 Score=95.84 Aligned_cols=122 Identities=25% Similarity=0.303 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhccC--CceEEEEcccccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC 199 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~--~~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~ 199 (397)
++.+++..-.+..+.+.++++++|||||+|++|..++. ..++|+|||.|+++++..++|+... +|++++.||+.+.
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 67788888889999999999999999999999999994 3679999999999999999998765 4999999999876
Q ss_pred chhhhhhhHHhhhcCCCCcceEeecCCCc---CcHHHHHHhccCCCceeeeEEeeeHHHHHHHc
Q 015990 200 HIRSHMLSLFERRKSSSGFAKVVANIPFN---ISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260 (397)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~---i~s~il~~L~~~g~~~~~~~lm~Qkeva~rl~ 260 (397)
.. ....+|.|+-+=--+ +...+..+|.++|+++..+ ++-|.+.++.
T Consensus 97 L~------------~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~na---itlE~~~~a~ 145 (187)
T COG2242 97 LP------------DLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANA---ITLETLAKAL 145 (187)
T ss_pred hc------------CCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEe---ecHHHHHHHH
Confidence 32 123678776442222 2223345667777776443 3456655555
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=1.6e-09 Score=103.82 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhc-c-CCceEEEEccccccchh
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA-S-IDQLKVLQEDFVKCHIR 202 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~-~-~~~v~ii~gD~~~~~~~ 202 (397)
+.+++.++......++.+|||+|||+|.++..++... .+|+|+|+++.+++.|++++. . ..+++++++|+.+..
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~-- 171 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL-- 171 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--
Confidence 4455556555556677899999999999999999874 789999999999999999986 2 247999999985531
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
..+.+|+|++|+||.-.
T Consensus 172 -----------~~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 172 -----------PGGRFDLIVSNPPYIPE 188 (275)
T ss_pred -----------CCCceeEEEECCCcCCc
Confidence 12579999999999543
No 62
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.03 E-value=1.4e-09 Score=102.56 Aligned_cols=91 Identities=21% Similarity=0.346 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchh
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~ 202 (397)
..+++.+++.+. ..+.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...+ +++++++|+.+..
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-- 150 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL-- 150 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC--
Confidence 345556666554 34468999999999999999986 5699999999999999999886543 7999999987631
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCCcCcH
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPFNIST 231 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s 231 (397)
..+.+|+|++|+||.-..
T Consensus 151 -----------~~~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 151 -----------PGGKFDLIVSNPPYIPEA 168 (251)
T ss_pred -----------cCCceeEEEECCCCCchh
Confidence 125799999999997544
No 63
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.03 E-value=1.2e-09 Score=105.74 Aligned_cols=92 Identities=17% Similarity=0.286 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccc
Q 015990 127 SEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH 200 (397)
Q Consensus 127 ~~i~~~i~~~~~~~-~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~ 200 (397)
+.+++.+++.+... ++.+|||+|||+|.++..++.. +.+|+|+|+++++++.|+++...++ +++++++|+.+..
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~ 178 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL 178 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC
Confidence 34445555443222 3368999999999999999986 3689999999999999999986543 4999999987631
Q ss_pred hhhhhhhHHhhhcCCCCcceEeecCCCcCcH
Q 015990 201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (397)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s 231 (397)
....+|+|++||||--..
T Consensus 179 -------------~~~~fDlIvsNPPyi~~~ 196 (284)
T TIGR00536 179 -------------AGQKIDIIVSNPPYIDEE 196 (284)
T ss_pred -------------cCCCccEEEECCCCCCcc
Confidence 123799999999996544
No 64
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.02 E-value=1.3e-09 Score=95.20 Aligned_cols=102 Identities=24% Similarity=0.433 Sum_probs=82.8
Q ss_pred cCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHhccCCceEEEEc
Q 015990 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASIDQLKVLQE 194 (397)
Q Consensus 118 ~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~---~V~~vE~d~~~i~~a~~~~~~~~~v~ii~g 194 (397)
.-|-=--...-++++|+..++...|.-|||+|+|||.+|..++++|. .+++||.|++++..+.+.+ +.+++++|
T Consensus 25 tVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ii~g 101 (194)
T COG3963 25 TVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNIING 101 (194)
T ss_pred eeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCcccccc
Confidence 33443345677889999999999999999999999999999999864 7999999999999999987 45779999
Q ss_pred cccccc--hhhhhhhHHhhhcCCCCcceEeecCCC-cCcH
Q 015990 195 DFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPF-NIST 231 (397)
Q Consensus 195 D~~~~~--~~~~~~~~~~~~~~~~~~d~Vv~NlPy-~i~s 231 (397)
|+.+++ +.+ +.+..+|.||+.+|+ +++.
T Consensus 102 da~~l~~~l~e---------~~gq~~D~viS~lPll~~P~ 132 (194)
T COG3963 102 DAFDLRTTLGE---------HKGQFFDSVISGLPLLNFPM 132 (194)
T ss_pred chhhHHHHHhh---------cCCCeeeeEEeccccccCcH
Confidence 998876 222 245789999999886 4443
No 65
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.02 E-value=1.2e-09 Score=104.32 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS 203 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~ 203 (397)
..++.+++.+.+++|++|||||||.|.+++.+|++ +.+|+|+++|+++.+.+++++...+ ++++...|..+++
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 34567888899999999999999999999999998 8999999999999999999876543 8999999988874
Q ss_pred hhhhHHhhhcCCCCcceEeec
Q 015990 204 HMLSLFERRKSSSGFAKVVAN 224 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~N 224 (397)
++||.||+=
T Consensus 136 ------------e~fDrIvSv 144 (283)
T COG2230 136 ------------EPFDRIVSV 144 (283)
T ss_pred ------------cccceeeeh
Confidence 348888863
No 66
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=1.2e-09 Score=106.98 Aligned_cols=75 Identities=15% Similarity=0.289 Sum_probs=63.2
Q ss_pred CEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++..++ +++++++|+.+.. ....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-------------~~~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-------------PGRR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-------------CCCC
Confidence 68999999999999999986 4699999999999999999987543 6999999986531 1246
Q ss_pred cceEeecCCCcCc
Q 015990 218 FAKVVANIPFNIS 230 (397)
Q Consensus 218 ~d~Vv~NlPy~i~ 230 (397)
+|+|++||||--.
T Consensus 202 fDlIvsNPPyi~~ 214 (307)
T PRK11805 202 YDLIVSNPPYVDA 214 (307)
T ss_pred ccEEEECCCCCCc
Confidence 9999999999543
No 67
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.01 E-value=1.3e-09 Score=111.50 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhh
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~ 204 (397)
..+++.+.+.+.+.++++|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++..++ |++++.+|+.+....
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~-- 355 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK-- 355 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH--
Confidence 3455666777777788899999999999999999988899999999999999999986553 899999999764211
Q ss_pred hhhHHhhhcCCCCcceEeecCCCcC-cHHHHHHhc
Q 015990 205 MLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL 238 (397)
Q Consensus 205 ~~~~~~~~~~~~~~d~Vv~NlPy~i-~s~il~~L~ 238 (397)
+. .....+|+|+.|+|+.- ...++..+.
T Consensus 356 ---~~---~~~~~~D~vi~dPPr~G~~~~~l~~l~ 384 (431)
T TIGR00479 356 ---QP---WAGQIPDVLLLDPPRKGCAAEVLRTII 384 (431)
T ss_pred ---HH---hcCCCCCEEEECcCCCCCCHHHHHHHH
Confidence 00 01246899999999854 455655543
No 68
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.01 E-value=1.5e-09 Score=102.97 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhh
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~ 211 (397)
+.++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|++++... .+++++++|+.+.++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~---------- 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---------- 123 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----------
Confidence 35678999999999999998887 2579999999999999999998643 379999999987753
Q ss_pred hcCCCCcceEeecCCCcC
Q 015990 212 RKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i 229 (397)
+.+|.|++|..++.
T Consensus 124 ----~~~D~vv~~~~l~~ 137 (247)
T PRK15451 124 ----ENASMVVLNFTLQF 137 (247)
T ss_pred ----CCCCEEehhhHHHh
Confidence 34788998876543
No 69
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.00 E-value=7.5e-10 Score=107.23 Aligned_cols=124 Identities=26% Similarity=0.283 Sum_probs=79.9
Q ss_pred ccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC---ceEEE
Q 015990 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVL 192 (397)
Q Consensus 117 k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~---~v~ii 192 (397)
..||....-...+.-.+++.. ..++++|||+|||+|.|+...++.|+ +|+|+|+|+.+++.|++|...|+ ++.+.
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~ 216 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS 216 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES
T ss_pred CcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE
Confidence 345543332233333334433 45778999999999999999999987 79999999999999999988765 44332
Q ss_pred EccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHH----HHHhccCCCceeeeEEeeeHHHHH
Q 015990 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV----IKQLLPMGDIFSEVVLLLQEETAL 257 (397)
Q Consensus 193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~i----l~~L~~~g~~~~~~~lm~Qkeva~ 257 (397)
...+. ...++|+|++|+-.++...+ ...+.++|.++.+..+--|.+...
T Consensus 217 --~~~~~--------------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~ 269 (295)
T PF06325_consen 217 --LSEDL--------------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVI 269 (295)
T ss_dssp --CTSCT--------------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHH
T ss_pred --Eeccc--------------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHH
Confidence 11111 12679999999876554433 344556777776666665654433
No 70
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=5e-10 Score=95.49 Aligned_cols=103 Identities=22% Similarity=0.338 Sum_probs=85.7
Q ss_pred CccccCCCccCCCHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhccCC-
Q 015990 114 FPRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID- 187 (397)
Q Consensus 114 ~~~k~~GQnfl~~~~i~~~i~~~~~~----~~~~~VLEIG~G~G~lt~~La~~~-~~V~~vE~d~~~i~~a~~~~~~~~- 187 (397)
+|+-.+.| |.+.|+++..|+..+.- -+|+.++|+|||+|.++...+-.+ ..|+|+|+|+++++.+..|.+...
T Consensus 18 Kpk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv 96 (185)
T KOG3420|consen 18 KPKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV 96 (185)
T ss_pred ccchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh
Confidence 67778888 99999999999887743 367899999999999997766654 479999999999999999987654
Q ss_pred ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 188 ~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
++.++++|+++..+ ..+.+|.+|-|+||..
T Consensus 97 qidlLqcdildle~------------~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 97 QIDLLQCDILDLEL------------KGGIFDTAVINPPFGT 126 (185)
T ss_pred hhheeeeeccchhc------------cCCeEeeEEecCCCCc
Confidence 77889999988754 3478999999999954
No 71
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.00 E-value=3.4e-09 Score=97.15 Aligned_cols=110 Identities=20% Similarity=0.290 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEcccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~ 197 (397)
++.+.+....+..+.+.++++|||+|||+|.++..++.. +.+|+++|+++++++.+++++..+ .+++++.+|+.
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 444666666677888899999999999999999998764 358999999999999999987654 37899999987
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCCCcC----cHHHHHHhccCCCce
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI----STDVIKQLLPMGDIF 244 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i----~s~il~~L~~~g~~~ 244 (397)
+.... ..+.+|.|+.+..... ...+.+.|.++|.++
T Consensus 103 ~~l~~-----------~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 103 EILFT-----------INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred hhHhh-----------cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEE
Confidence 64211 1257899998654322 223444566777654
No 72
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.00 E-value=4.7e-09 Score=95.66 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=78.5
Q ss_pred cCCCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC---ceEEEEcccc
Q 015990 123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~ 197 (397)
.-++..+.+.+...+. .-++.+|||++||+|.++..++.+|+ +|++||.|+.+++.+++|++.++ +++++.+|+.
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 3455666666666553 23578999999999999999999976 89999999999999999986543 6899999996
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCCCcC--cHHHHHHhcc
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLP 239 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~s~il~~L~~ 239 (397)
+.-.. ... ....+|+|+.+|||.. ..+++..+..
T Consensus 110 ~~l~~-----~~~---~~~~~dvv~~DPPy~~~~~~~~l~~l~~ 145 (189)
T TIGR00095 110 RALKF-----LAK---KPTFDNVIYLDPPFFNGALQALLELCEN 145 (189)
T ss_pred HHHHH-----hhc---cCCCceEEEECcCCCCCcHHHHHHHHHH
Confidence 64210 000 1124799999999953 2344444433
No 73
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.00 E-value=1.5e-09 Score=104.35 Aligned_cols=108 Identities=23% Similarity=0.343 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS 203 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~ 203 (397)
..++.+++.+++++|++|||||||.|.++..++++ |++|+||.+|++..+.+++++...+ ++++..+|..+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 45677888899999999999999999999999998 9999999999999999999987654 7999999987763
Q ss_pred hhhhHHhhhcCCCCcceEeecCCC-cC--------cHHHHHHhccCCCceeeeEEe
Q 015990 204 HMLSLFERRKSSSGFAKVVANIPF-NI--------STDVIKQLLPMGDIFSEVVLL 250 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy-~i--------~s~il~~L~~~g~~~~~~~lm 250 (397)
.+||.||+-=.+ ++ ...+-..|.++|.++......
T Consensus 126 ------------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 126 ------------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp -------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred ------------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 378888764222 11 123445666777665443333
No 74
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.00 E-value=3.3e-09 Score=96.99 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~ 198 (397)
++.+.+...+++.+.+.++++|||+|||+|.++..+++. +.+|+++|+|+++++.++++++.. .+++++.+|+.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 455666667888888889999999999999999999864 479999999999999999988654 479999999865
No 75
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.00 E-value=1.5e-09 Score=86.01 Aligned_cols=84 Identities=26% Similarity=0.410 Sum_probs=65.2
Q ss_pred EEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEeec
Q 015990 146 LEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (397)
Q Consensus 146 LEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (397)
||+|||+|..+..+++. +.+|+++|+++++++.++++... .++.++++|+.++++. .+.+|.|+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~------------~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLPFP------------DNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-------------TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCccc------------cccccccccc
Confidence 89999999999999999 88999999999999999998864 4677999999999764 3689999988
Q ss_pred CCCcCc-------HHHHHHhccCCC
Q 015990 225 IPFNIS-------TDVIKQLLPMGD 242 (397)
Q Consensus 225 lPy~i~-------s~il~~L~~~g~ 242 (397)
--++.. .++.+.|+++|.
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGR 92 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeE
Confidence 666544 244555555553
No 76
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.99 E-value=1.8e-09 Score=97.60 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=73.2
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC--c---------EEEEeCCHHHHHHHHHHhccCC---c
Q 015990 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--T---------VLAIEKDQHMVGLVRERFASID---Q 188 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~---------V~~vE~d~~~i~~a~~~~~~~~---~ 188 (397)
--+++.++..|+..+..++++.|||.-||+|++..+.+..+. . ++|+|+|+++++.+++|+...+ .
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 357789999999999999999999999999999988776532 3 7799999999999999987543 6
Q ss_pred eEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 189 v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
+.+.++|+.++++. .+.+|.||+||||...
T Consensus 90 i~~~~~D~~~l~~~------------~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 90 IDFIQWDARELPLP------------DGSVDAIVTNPPYGRR 119 (179)
T ss_dssp EEEEE--GGGGGGT------------TSBSCEEEEE--STTS
T ss_pred eEEEecchhhcccc------------cCCCCEEEECcchhhh
Confidence 89999999998732 3578999999999764
No 77
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.99 E-value=1.7e-09 Score=104.82 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=65.8
Q ss_pred HHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhhHHhhh
Q 015990 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERR 212 (397)
Q Consensus 134 ~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~~~~~~ 212 (397)
+..+...++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.++++....+ ++++..+|+....+
T Consensus 113 ~~~~~~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~----------- 181 (287)
T PRK12335 113 LEAVQTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI----------- 181 (287)
T ss_pred HHHhhccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-----------
Confidence 333333445699999999999999999999999999999999999998876544 78888888876543
Q ss_pred cCCCCcceEeecCCCc
Q 015990 213 KSSSGFAKVVANIPFN 228 (397)
Q Consensus 213 ~~~~~~d~Vv~NlPy~ 228 (397)
.+.+|+|+++..++
T Consensus 182 --~~~fD~I~~~~vl~ 195 (287)
T PRK12335 182 --QEEYDFILSTVVLM 195 (287)
T ss_pred --cCCccEEEEcchhh
Confidence 25799999987654
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.99 E-value=2.8e-09 Score=110.43 Aligned_cols=115 Identities=17% Similarity=0.297 Sum_probs=87.4
Q ss_pred cCCCccCCCHHH--HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccC-CceEEEE
Q 015990 118 SLGQHYMLNSEI--NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVLQ 193 (397)
Q Consensus 118 ~~GQnfl~~~~i--~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~ 193 (397)
.+|..|.+++.+ .+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++.... .++++++
T Consensus 241 f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~ 320 (475)
T PLN02336 241 VFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEV 320 (475)
T ss_pred HhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEE
Confidence 467778777665 456777777888889999999999999999886 779999999999999999887543 3799999
Q ss_pred ccccccchhhhhhhHHhhhcCCCCcceEeecCCC-cCc------HHHHHHhccCCCce
Q 015990 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NIS------TDVIKQLLPMGDIF 244 (397)
Q Consensus 194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy-~i~------s~il~~L~~~g~~~ 244 (397)
+|+.+.++. .+.||+|+++-.+ ++. ..+.+.|.++|.++
T Consensus 321 ~d~~~~~~~------------~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 321 ADCTKKTYP------------DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred cCcccCCCC------------CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEE
Confidence 999876542 2579999987443 222 23445566666543
No 79
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.98 E-value=1.8e-09 Score=112.46 Aligned_cols=77 Identities=19% Similarity=0.368 Sum_probs=63.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++..+ ++++++++|+.+.. ..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-------------~~ 204 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-------------EK 204 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-------------cC
Confidence 3468999999999999998875 569999999999999999998654 36899999986531 12
Q ss_pred CCcceEeecCCCcCc
Q 015990 216 SGFAKVVANIPFNIS 230 (397)
Q Consensus 216 ~~~d~Vv~NlPy~i~ 230 (397)
..+|+|++||||--.
T Consensus 205 ~~fDlIvsNPPYi~~ 219 (506)
T PRK01544 205 QKFDFIVSNPPYISH 219 (506)
T ss_pred CCccEEEECCCCCCc
Confidence 479999999999653
No 80
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.98 E-value=3.2e-09 Score=98.65 Aligned_cols=82 Identities=27% Similarity=0.347 Sum_probs=68.3
Q ss_pred HHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchh
Q 015990 128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (397)
Q Consensus 128 ~i~~~i~~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~ 202 (397)
.+.+.+++.+. ..++.+|||+|||+|.++..+++.+.+|+|+|+|++|++.|++++... .++++.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence 45566777766 567889999999999999999998889999999999999999987643 37899999987753
Q ss_pred hhhhhHHhhhcCCCCcceEeec
Q 015990 203 SHMLSLFERRKSSSGFAKVVAN 224 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~N 224 (397)
+.+|+|++.
T Consensus 118 -------------~~fD~ii~~ 126 (219)
T TIGR02021 118 -------------GEFDIVVCM 126 (219)
T ss_pred -------------CCcCEEEEh
Confidence 468888864
No 81
>PRK04266 fibrillarin; Provisional
Probab=98.98 E-value=3.1e-09 Score=99.44 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=74.3
Q ss_pred HHhcCCCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhh
Q 015990 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~ 212 (397)
+.+++.++++|||+|||+|.++..+++.. .+|+|+|+++.|++.+.++.....|+.++.+|+...... .+
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~---~~----- 137 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERY---AH----- 137 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchh---hh-----
Confidence 36788899999999999999999999873 589999999999998877766556899999998752110 00
Q ss_pred cCCCCcceEeecCCCcC-----cHHHHHHhccCCCce
Q 015990 213 KSSSGFAKVVANIPFNI-----STDVIKQLLPMGDIF 244 (397)
Q Consensus 213 ~~~~~~d~Vv~NlPy~i-----~s~il~~L~~~g~~~ 244 (397)
..+.+|.|+.+++... ...+.+.|+++|.++
T Consensus 138 -l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 138 -VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLL 173 (226)
T ss_pred -ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEE
Confidence 1245899998876422 223444566666553
No 82
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.6e-09 Score=110.25 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhh
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~ 204 (397)
+.+++.+.++++..++++|||+.||.|++|..||++..+|+|+|+++++++.|++|++.++ |++++.+|+.++....
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~- 357 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW- 357 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc-
Confidence 5566667777788888999999999999999999999999999999999999999998775 8999999999885431
Q ss_pred hhhHHhhhcCCCCcceEeecCCCcCcH-HHHHHhccCCC
Q 015990 205 MLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGD 242 (397)
Q Consensus 205 ~~~~~~~~~~~~~~d~Vv~NlPy~i~s-~il~~L~~~g~ 242 (397)
.....+|.|+.|||-.-.. ++++.+...+.
T Consensus 358 --------~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p 388 (432)
T COG2265 358 --------WEGYKPDVVVVDPPRAGADREVLKQLAKLKP 388 (432)
T ss_pred --------cccCCCCEEEECCCCCCCCHHHHHHHHhcCC
Confidence 1135789999999986555 77777665443
No 83
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.97 E-value=2e-09 Score=87.57 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=61.1
Q ss_pred EEEEcCcccHHHHHHHHcC-----CcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 145 VLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 145 VLEIG~G~G~lt~~La~~~-----~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
|||+|||+|..+..+++.. .+++|+|+|++|++.++++....+ +++++++|+.+++.. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~------------~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS------------DGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH------------SSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc------------CCCe
Confidence 7999999999999999874 799999999999999999986433 899999999887542 3589
Q ss_pred ceEee-cC-CCcCcHHHHHHh
Q 015990 219 AKVVA-NI-PFNISTDVIKQL 237 (397)
Q Consensus 219 d~Vv~-Nl-Py~i~s~il~~L 237 (397)
|+|++ +. ..+++.+-+..+
T Consensus 69 D~v~~~~~~~~~~~~~~~~~l 89 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEAL 89 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHH
T ss_pred eEEEEcCCccCCCCHHHHHHH
Confidence 99988 34 234555444333
No 84
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=4.4e-09 Score=98.20 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEcccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~ 197 (397)
++-|.-+..|+..+++.+|++|||.|+|+|++|..|+.. .++|+++|+.++.++.|++|++..+ ++++..+|+.
T Consensus 77 iIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 77 IIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred eecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 444555678999999999999999999999999999974 3699999999999999999997643 5999999998
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCC--CcCcHHHHHHhccCCCceeeeEEeee-HHHHHHHccCCCCCCCccceee
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFSEVVLLLQ-EETALRLVEPSLRTSEYRPINI 274 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP--y~i~s~il~~L~~~g~~~~~~~lm~Q-keva~rl~~a~pg~k~y~~lsv 274 (397)
+... ...+|.|+.++| ++....+...|++++....-....-| ....+.|- .. | |..+..
T Consensus 157 ~~~~-------------~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~-~~-g---~~~ie~ 218 (256)
T COG2519 157 EGID-------------EEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALR-ER-G---FVDIEA 218 (256)
T ss_pred cccc-------------ccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH-hc-C---ccchhh
Confidence 8753 247999999986 56667777888888755432233333 12233333 11 2 222211
Q ss_pred eeecccCCeEeeeeCCCCccCCC--CCceEEEEEEec
Q 015990 275 FVNFYSEPEYKFKVPRTNFFPQP--KVDAAVVTFKLK 309 (397)
Q Consensus 275 ~~q~~~~~~~~~~v~~~~F~P~P--~VdSavv~l~~~ 309 (397)
+--......+.+....|.- --..+.|.+.++
T Consensus 219 ----~E~l~R~~~v~~~~~RP~~~~v~HTgyivf~R~ 251 (256)
T COG2519 219 ----VETLVRRWEVRKEATRPETRMVGHTGYIVFARK 251 (256)
T ss_pred ----heeeeheeeecccccCcccccccceeEEEEEee
Confidence 1122334567777777773 235556665544
No 85
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.95 E-value=2e-09 Score=100.63 Aligned_cols=112 Identities=25% Similarity=0.329 Sum_probs=78.8
Q ss_pred CCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--------ceEEEEccccccchhhhhhhHHhhhc
Q 015990 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--------~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
|.+|||+|||+|.++..|++.|+.|+|||.+++|++.|++.....+ ++++.+.|++...
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------------- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------------- 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-------------
Confidence 4789999999999999999999999999999999999999854433 2556666666542
Q ss_pred CCCCcceEeecCCC-------cCcHHHHHHhccCCCceee---------eEEeeeHHHHHHHccCCCCCCCcc
Q 015990 214 SSSGFAKVVANIPF-------NISTDVIKQLLPMGDIFSE---------VVLLLQEETALRLVEPSLRTSEYR 270 (397)
Q Consensus 214 ~~~~~d~Vv~NlPy-------~i~s~il~~L~~~g~~~~~---------~~lm~Qkeva~rl~~a~pg~k~y~ 270 (397)
+.||.|++.--+ .+...+...|+|+|.+|-. +.-++-.|.+.|++ +.|+..+.
T Consensus 157 --~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~iv--p~Gth~~e 225 (282)
T KOG1270|consen 157 --GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIV--PKGTHTWE 225 (282)
T ss_pred --cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhc--CCCCcCHH
Confidence 468988875332 2333455667788776532 22344456666654 45665543
No 86
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.94 E-value=2e-09 Score=105.80 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
.++.+|||||||+|.++..+++.+++|+|||.++++++.|+++.... .+++++++|+.+++.. .+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~------------~~ 197 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE------------GR 197 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc------------cC
Confidence 45679999999999999999999999999999999999999876432 3799999999876532 25
Q ss_pred CcceEeecCCCc-C------cHHHHHHhccCCCce
Q 015990 217 GFAKVVANIPFN-I------STDVIKQLLPMGDIF 244 (397)
Q Consensus 217 ~~d~Vv~NlPy~-i------~s~il~~L~~~g~~~ 244 (397)
.||+|++.-.++ + ...+.+.|+++|.++
T Consensus 198 ~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 198 KFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATV 232 (322)
T ss_pred CCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEE
Confidence 799988754322 2 223455666777654
No 87
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.94 E-value=5.8e-09 Score=100.29 Aligned_cols=90 Identities=13% Similarity=0.247 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC-----CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~-----~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++. ++++++.+|+.++++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp~~------------ 148 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLPFA------------ 148 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCCCc------------
Confidence 455789999999999999998752 37999999999999998764 5789999999887653
Q ss_pred CCCcceEeecCCCcCcHHHHHHhccCCCce
Q 015990 215 SSGFAKVVANIPFNISTDVIKQLLPMGDIF 244 (397)
Q Consensus 215 ~~~~d~Vv~NlPy~i~s~il~~L~~~g~~~ 244 (397)
.+.+|+|+++..-....++.+.|+++|.++
T Consensus 149 ~~sfD~I~~~~~~~~~~e~~rvLkpgG~li 178 (272)
T PRK11088 149 DQSLDAIIRIYAPCKAEELARVVKPGGIVI 178 (272)
T ss_pred CCceeEEEEecCCCCHHHHHhhccCCCEEE
Confidence 357999998765455577888888888664
No 88
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.94 E-value=8.4e-09 Score=93.48 Aligned_cols=121 Identities=18% Similarity=0.384 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccc
Q 015990 125 LNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK 198 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~--~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~ 198 (397)
+...+-+.+.+.+... ++.+|||+.||+|.++.+.+.+|+ +|+.||.|+++++.+++|++..+ +++++.+|+..
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~ 103 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK 103 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence 4456667777777653 788999999999999999999976 89999999999999999987543 68999999876
Q ss_pred cchhhhhhhHHhhhcCCCCcceEeecCCCcCcH---HHHHHhccCCCceeeeEEeeeH
Q 015990 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFSEVVLLLQE 253 (397)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s---~il~~L~~~g~~~~~~~lm~Qk 253 (397)
.-.. .. .....||+|+.+|||.... +++..+...+.+-....+.++.
T Consensus 104 ~l~~-----~~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 104 FLLK-----LA---KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHH-----HH---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHh-----hc---ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 5321 10 1346899999999998664 4666665544333445555543
No 89
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.94 E-value=7.4e-09 Score=100.50 Aligned_cols=93 Identities=23% Similarity=0.244 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..++ ++++..+|.... ..
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~--------------~~ 223 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP--------------IE 223 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc--------------cC
Confidence 4678999999999999999988865 89999999999999999987543 466666663221 12
Q ss_pred CCcceEeecCCCcCcH----HHHHHhccCCCceee
Q 015990 216 SGFAKVVANIPFNIST----DVIKQLLPMGDIFSE 246 (397)
Q Consensus 216 ~~~d~Vv~NlPy~i~s----~il~~L~~~g~~~~~ 246 (397)
+.+|+|++|+...... .+.+.|.++|.++..
T Consensus 224 ~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 224 GKADVIVANILAEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5799999997654332 344566677765543
No 90
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.93 E-value=8.3e-09 Score=104.23 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=73.4
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC----ceEEEEcccc
Q 015990 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~----~v~ii~gD~~ 197 (397)
|..|....+..+..+ .++++|||+|||+|.++..++..++ +|++||+|+.+++.|++|+..++ +++++++|+.
T Consensus 204 ~flDqr~~R~~~~~~--~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~ 281 (396)
T PRK15128 204 YYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF 281 (396)
T ss_pred cChhhHHHHHHHHHh--cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence 455555555555444 3578999999999999988776655 89999999999999999987643 6899999997
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
++.. ++.. ....||+|+.||||...
T Consensus 282 ~~l~-----~~~~---~~~~fDlVilDPP~f~~ 306 (396)
T PRK15128 282 KLLR-----TYRD---RGEKFDVIVMDPPKFVE 306 (396)
T ss_pred HHHH-----HHHh---cCCCCCEEEECCCCCCC
Confidence 6521 1100 23579999999999654
No 91
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.93 E-value=3.5e-09 Score=97.45 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=61.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccc-cccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF-VKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~-~~~~~~~~~~~~~~~~~~~ 215 (397)
++.+|||+|||+|.++..+++. +.+|+|||+++++++.|++++... ++++++++|+ ..++.. ...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------FPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----------cCc
Confidence 5679999999999999999886 468999999999999999987654 4899999999 544310 023
Q ss_pred CCcceEeecCCC
Q 015990 216 SGFAKVVANIPF 227 (397)
Q Consensus 216 ~~~d~Vv~NlPy 227 (397)
+.+|.|+.|.|.
T Consensus 110 ~~~D~V~~~~~~ 121 (202)
T PRK00121 110 GSLDRIYLNFPD 121 (202)
T ss_pred cccceEEEECCC
Confidence 578999998653
No 92
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.92 E-value=5.7e-09 Score=106.76 Aligned_cols=91 Identities=22% Similarity=0.286 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH 204 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~ 204 (397)
.....++..+++.++++|||+|||+|..|..+++.+ .+|+|+|+++.+++.+++++...+ +++++++|+.+.+..
T Consensus 231 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~-- 308 (427)
T PRK10901 231 AAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQW-- 308 (427)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhh--
Confidence 344456667788899999999999999999999874 589999999999999999987655 678999999865310
Q ss_pred hhhHHhhhcCCCCcceEeecCCCc
Q 015990 205 MLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 205 ~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
.....||.|+.|+|+.
T Consensus 309 --------~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 309 --------WDGQPFDRILLDAPCS 324 (427)
T ss_pred --------cccCCCCEEEECCCCC
Confidence 0135799999999985
No 93
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.92 E-value=4.8e-09 Score=99.10 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEcccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~ 197 (397)
++-+.-+..|+..+++.+|++|||.|+|+|.+|..|+.. .++|+.+|+.++.++.|+++++.++ ++++.+.|+.
T Consensus 23 IiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 23 IIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp ---HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred eeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 555677788999999999999999999999999999985 4699999999999999999998653 8999999997
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCC--CcCcHHHHHHh-ccCCCceeeeEEeee-HHHHHHHc
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQL-LPMGDIFSEVVLLLQ-EETALRLV 260 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP--y~i~s~il~~L-~~~g~~~~~~~lm~Q-keva~rl~ 260 (397)
+-.+.+. ....+|.|+.++| +.....+...| .++|.+..-...+-| ....+.|-
T Consensus 103 ~~g~~~~---------~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~ 160 (247)
T PF08704_consen 103 EEGFDEE---------LESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR 160 (247)
T ss_dssp CG--STT----------TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccccc---------ccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH
Confidence 5433211 1257899999997 45566777778 677766544444444 22344444
No 94
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.91 E-value=7e-09 Score=99.40 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=69.4
Q ss_pred HHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhH
Q 015990 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSL 208 (397)
Q Consensus 134 ~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~ 208 (397)
...++++++++|||+|||+|..|..+++. .+.|+++|+++.+++.++++++..+ +++++++|+..+..
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~------- 136 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA------- 136 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-------
Confidence 44567889999999999999999999885 3589999999999999999987654 78999999876532
Q ss_pred HhhhcCCCCcceEeecCCCc
Q 015990 209 FERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 209 ~~~~~~~~~~d~Vv~NlPy~ 228 (397)
..+.+|+|+.|+|..
T Consensus 137 -----~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 137 -----AVPKFDAILLDAPCS 151 (264)
T ss_pred -----hccCCCEEEEcCCCC
Confidence 124599999999975
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.91 E-value=4.3e-09 Score=109.01 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhh
Q 015990 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH 204 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~ 204 (397)
++......+++.+...++++|||||||+|.++..+++.+.+|+|+|++++|++.+++.....++++++++|+......
T Consensus 21 ~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-- 98 (475)
T PLN02336 21 LDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-- 98 (475)
T ss_pred cCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC--
Confidence 333445677888877778899999999999999999998899999999999998876544446899999999753321
Q ss_pred hhhHHhhhcCCCCcceEeecCCCcC
Q 015990 205 MLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 205 ~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
...+.+|+|+++.+++.
T Consensus 99 --------~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 99 --------ISDGSVDLIFSNWLLMY 115 (475)
T ss_pred --------CCCCCEEEEehhhhHHh
Confidence 02357999999988654
No 96
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.90 E-value=8.7e-09 Score=97.07 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhhh
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~~ 212 (397)
.++.+|||+|||+|.++..+++. +.+++|+|+++.|++.|++++... .+++++++|+.+.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----------
Confidence 46779999999999999999874 568999999999999999987643 378999999988754
Q ss_pred cCCCCcceEeecCCCcCc---------HHHHHHhccCCCc
Q 015990 213 KSSSGFAKVVANIPFNIS---------TDVIKQLLPMGDI 243 (397)
Q Consensus 213 ~~~~~~d~Vv~NlPy~i~---------s~il~~L~~~g~~ 243 (397)
+.+|.|+++...+.. ..+.+.|.++|.+
T Consensus 121 ---~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l 157 (239)
T TIGR00740 121 ---KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL 157 (239)
T ss_pred ---CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence 246788887654432 2344455666644
No 97
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.89 E-value=8.2e-09 Score=101.14 Aligned_cols=84 Identities=15% Similarity=0.241 Sum_probs=62.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC----ceEEEE-ccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQ-EDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~----~v~ii~-gD~~~~~~~~~~~~~~~~~~ 213 (397)
.+.+|||||||+|.+...|+.+ +.+++|+|+|+.+++.|+++++.++ +++++. .|...+.. .+. .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~-----~i~---~ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFK-----GII---H 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhh-----ccc---c
Confidence 4579999999999998888765 6799999999999999999998763 566654 33322210 000 0
Q ss_pred CCCCcceEeecCCCcCcHH
Q 015990 214 SSSGFAKVVANIPFNISTD 232 (397)
Q Consensus 214 ~~~~~d~Vv~NlPy~i~s~ 232 (397)
..+.||+|++||||+.+.+
T Consensus 186 ~~~~fDlivcNPPf~~s~~ 204 (321)
T PRK11727 186 KNERFDATLCNPPFHASAA 204 (321)
T ss_pred cCCceEEEEeCCCCcCcch
Confidence 2357999999999987654
No 98
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.89 E-value=2.1e-08 Score=98.26 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=82.7
Q ss_pred CccccCCCccCCCHHHHHH-----HHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHH---Hhc
Q 015990 114 FPRKSLGQHYMLNSEINDQ-----LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRE---RFA 184 (397)
Q Consensus 114 ~~~k~~GQnfl~~~~i~~~-----i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~---~~~ 184 (397)
+++-.+.| |.+|.++... ++..+...++++|||||||+|+++..++..++ .|+|||.++.|+..++. ...
T Consensus 90 ~~~~~l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~ 168 (314)
T TIGR00452 90 KGPFELSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD 168 (314)
T ss_pred CCCccccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc
Confidence 44555656 6778777544 44555667789999999999999999998875 69999999999876433 223
Q ss_pred cCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCC-CcCcH------HHHHHhccCCCcee
Q 015990 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIST------DVIKQLLPMGDIFS 245 (397)
Q Consensus 185 ~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP-y~i~s------~il~~L~~~g~~~~ 245 (397)
..+++.+..+|+.+++. ...||.|+++-- |+..+ .+.+.|.++|.++-
T Consensus 169 ~~~~v~~~~~~ie~lp~-------------~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 169 NDKRAILEPLGIEQLHE-------------LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred cCCCeEEEECCHHHCCC-------------CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEE
Confidence 33578888888877653 147899988743 33332 34456667776653
No 99
>PRK05785 hypothetical protein; Provisional
Probab=98.87 E-value=6e-09 Score=97.61 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=58.2
Q ss_pred CCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
++.+|||+|||+|.++..+++. +.+|+|+|++++|++.|+++. ..+++|+.++++. .+.||
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp~~------------d~sfD 112 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALPFR------------DKSFD 112 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCCCC------------CCCEE
Confidence 4679999999999999999988 689999999999999998742 3578999888753 36899
Q ss_pred eEeecCCC
Q 015990 220 KVVANIPF 227 (397)
Q Consensus 220 ~Vv~NlPy 227 (397)
.|+++...
T Consensus 113 ~v~~~~~l 120 (226)
T PRK05785 113 VVMSSFAL 120 (226)
T ss_pred EEEecChh
Confidence 99987654
No 100
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.87 E-value=6.2e-09 Score=94.05 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=73.7
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 136 ~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++-..-.++||+|||.|.+|..|+.++.+++++|+++.+++.|++++...++|+++++|+.+..+ .
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P-------------~ 104 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWP-------------E 104 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----------------S
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCC-------------C
Confidence 355455578999999999999999999999999999999999999999888899999999977643 3
Q ss_pred CCcceE-eecCCCcCcH-HH--------HHHhccCCCceeeeEEeeeHHHHHHH
Q 015990 216 SGFAKV-VANIPFNIST-DV--------IKQLLPMGDIFSEVVLLLQEETALRL 259 (397)
Q Consensus 216 ~~~d~V-v~NlPy~i~s-~i--------l~~L~~~g~~~~~~~lm~Qkeva~rl 259 (397)
+.||+| ++-+-|++.. +- ...|.++|.++. .....+...|.
T Consensus 105 ~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~---g~~rd~~c~~w 155 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVF---GHARDANCRRW 155 (201)
T ss_dssp S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEE---EEE-HHHHHHT
T ss_pred CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEE---EEecCCccccc
Confidence 678865 5668888863 22 233456665542 22345555553
No 101
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.87 E-value=1.5e-08 Score=93.43 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=60.6
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.++++|||+|||+|.++..|++. +.+++|||+|++|++.|+++. ++++++++|+.+ ++ ..+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~~------------~~~ 104 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-PF------------KDN 104 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-CC------------CCC
Confidence 346778999999999999999886 679999999999999999875 357888999877 33 236
Q ss_pred CcceEeecCCC
Q 015990 217 GFAKVVANIPF 227 (397)
Q Consensus 217 ~~d~Vv~NlPy 227 (397)
.+|+|+++-..
T Consensus 105 sfD~V~~~~vL 115 (204)
T TIGR03587 105 FFDLVLTKGVL 115 (204)
T ss_pred CEEEEEECChh
Confidence 79999988654
No 102
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=1.2e-08 Score=104.89 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhh
Q 015990 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (397)
Q Consensus 130 ~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~ 204 (397)
...+...+.+.++++|||+|||+|..|..+++. .++|+|+|+++.+++.+++++...+ +++++++|+.+....
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-- 316 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK-- 316 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch--
Confidence 335556778888999999999999999999985 4689999999999999999987654 799999999876311
Q ss_pred hhhHHhhhcCCCCcceEeecCCCc
Q 015990 205 MLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 205 ~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
..+.||.|+.|+|+.
T Consensus 317 ---------~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 317 ---------FAEKFDKILVDAPCS 331 (444)
T ss_pred ---------hcccCCEEEEcCCCC
Confidence 115799999999964
No 103
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.2e-08 Score=99.63 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=87.0
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEc-ccccc
Q 015990 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQE-DFVKC 199 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~g-D~~~~ 199 (397)
--++|.+++.+++.+.+++|+.|||.-||||.+.....-.|++++|.|+|.+|++-++.|++..+ ...+..+ |+.++
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 56889999999999999999999999999999999999899999999999999999999998764 6666666 99999
Q ss_pred chhhhhhhHHhhhcCCCCcceEeecCCCcCcH
Q 015990 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (397)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s 231 (397)
++. ...+|.|+.+|||..++
T Consensus 259 pl~------------~~~vdaIatDPPYGrst 278 (347)
T COG1041 259 PLR------------DNSVDAIATDPPYGRST 278 (347)
T ss_pred CCC------------CCccceEEecCCCCccc
Confidence 864 24699999999998876
No 104
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.86 E-value=7.4e-09 Score=94.62 Aligned_cols=78 Identities=23% Similarity=0.260 Sum_probs=62.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
...+|||||||+|.++..+++. ..+|+|||+++++++.|+++.... +|++++++|+.++.... ...+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---------~~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---------FPDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh---------CCCC
Confidence 4568999999999999999986 569999999999999998887643 48999999998753210 0224
Q ss_pred CcceEeecCCC
Q 015990 217 GFAKVVANIPF 227 (397)
Q Consensus 217 ~~d~Vv~NlPy 227 (397)
.+|.|+.|.|-
T Consensus 87 ~~d~v~~~~pd 97 (194)
T TIGR00091 87 SLSKVFLNFPD 97 (194)
T ss_pred ceeEEEEECCC
Confidence 68999999764
No 105
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.86 E-value=1.8e-08 Score=101.61 Aligned_cols=99 Identities=23% Similarity=0.314 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhh
Q 015990 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (397)
Q Consensus 129 i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~ 207 (397)
.++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++.... ++++..+|+.+.
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l-------- 225 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL-------- 225 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc--------
Confidence 3456777888889999999999999999999986 789999999999999999988532 578888887554
Q ss_pred HHhhhcCCCCcceEeecCCCcC---------cHHHHHHhccCCCc
Q 015990 208 LFERRKSSSGFAKVVANIPFNI---------STDVIKQLLPMGDI 243 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i---------~s~il~~L~~~g~~ 243 (397)
.+.+|.|+++..+.. ...+.+.|+++|.+
T Consensus 226 -------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~l 263 (383)
T PRK11705 226 -------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLF 263 (383)
T ss_pred -------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEE
Confidence 146899988754322 12344456666644
No 106
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.85 E-value=1.4e-08 Score=101.65 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM 205 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~ 205 (397)
.+++.+.+.+... +.+|||++||+|.++..+++...+|+|||+++.+++.|++|+..++ |++++.+|+.++-. .
T Consensus 194 ~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~-~-- 269 (362)
T PRK05031 194 KMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ-A-- 269 (362)
T ss_pred HHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH-H--
Confidence 3444444444432 3579999999999999999888899999999999999999986654 89999999977521 1
Q ss_pred hhHHhhhc---------CCCCcceEeecCCCcC-cHHHHHHhcc
Q 015990 206 LSLFERRK---------SSSGFAKVVANIPFNI-STDVIKQLLP 239 (397)
Q Consensus 206 ~~~~~~~~---------~~~~~d~Vv~NlPy~i-~s~il~~L~~ 239 (397)
+..... ....+|+|+.|||+.- ...++..+..
T Consensus 270 --~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~ 311 (362)
T PRK05031 270 --MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA 311 (362)
T ss_pred --HhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc
Confidence 100000 0125899999999854 4456666654
No 107
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.85 E-value=7.2e-09 Score=108.69 Aligned_cols=105 Identities=15% Similarity=0.287 Sum_probs=79.6
Q ss_pred ccCCCccCCCHHHHHHHHHHhcCC-------CCCEEEEEcCcccHHHHHHHHcC----------CcEEEEeCCHHHHHHH
Q 015990 117 KSLGQHYMLNSEINDQLAAAAAVQ-------EGDIVLEIGPGTGSLTNVLLNAG----------ATVLAIEKDQHMVGLV 179 (397)
Q Consensus 117 k~~GQnfl~~~~i~~~i~~~~~~~-------~~~~VLEIG~G~G~lt~~La~~~----------~~V~~vE~d~~~i~~a 179 (397)
|..|| |.+++.+++.|++.+... .+.+|||.|||+|.+...++... .+++|+|+|+.+++.+
T Consensus 1 K~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a 79 (524)
T TIGR02987 1 KAYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA 79 (524)
T ss_pred CCCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence 46789 899999999999877322 34589999999999998887631 4689999999999999
Q ss_pred HHHhccCC--ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 180 RERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 180 ~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
+.++...+ .+.+.++|.+...... .. ...+.||+||+||||.-
T Consensus 80 ~~~l~~~~~~~~~i~~~d~l~~~~~~-----~~--~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 80 KKLLGEFALLEINVINFNSLSYVLLN-----IE--SYLDLFDIVITNPPYGR 124 (524)
T ss_pred HHHHhhcCCCCceeeecccccccccc-----cc--cccCcccEEEeCCCccc
Confidence 99876554 5677777776543210 00 01257999999999964
No 108
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.85 E-value=1.5e-08 Score=101.17 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchh
Q 015990 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~ 202 (397)
.+..+++.+.+.+...+ ++|||+|||+|.++..|++...+|+|||+++++++.|++|+..++ |++++.+|+.++...
T Consensus 182 ~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 182 VNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 34556666666665433 469999999999999999888899999999999999999987654 899999999775311
Q ss_pred hhhh--hH--Hhhh-cCCCCcceEeecCCCcC-cHHHHHHhcc
Q 015990 203 SHML--SL--FERR-KSSSGFAKVVANIPFNI-STDVIKQLLP 239 (397)
Q Consensus 203 ~~~~--~~--~~~~-~~~~~~d~Vv~NlPy~i-~s~il~~L~~ 239 (397)
... .+ .... .....+|+|+.|||..- ...++..+..
T Consensus 261 -~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~ 302 (353)
T TIGR02143 261 -MNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA 302 (353)
T ss_pred -HhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc
Confidence 000 00 0000 00113799999999754 3455566554
No 109
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.84 E-value=1.5e-08 Score=97.34 Aligned_cols=95 Identities=18% Similarity=0.338 Sum_probs=72.0
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhh
Q 015990 137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 137 ~~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~ 211 (397)
+.+.++++|||+|||+|..+..+++. + .+|+++|+++.+++.|+++.... ++++++.+|+.++++.
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~--------- 143 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVA--------- 143 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCC---------
Confidence 46778999999999999988877764 3 47999999999999999987543 4899999999877542
Q ss_pred hcCCCCcceEeecCCCcCc-------HHHHHHhccCCCc
Q 015990 212 RKSSSGFAKVVANIPFNIS-------TDVIKQLLPMGDI 243 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i~-------s~il~~L~~~g~~ 243 (397)
.+.+|+|++|..++.. ..+.+.|.++|.+
T Consensus 144 ---~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 144 ---DNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRF 179 (272)
T ss_pred ---CCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEE
Confidence 2578999998655432 2344455565544
No 110
>PRK08317 hypothetical protein; Provisional
Probab=98.83 E-value=2.8e-08 Score=92.44 Aligned_cols=104 Identities=23% Similarity=0.336 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~ 203 (397)
...+.+++.+.+.++.+|||+|||+|.++..+++. .++++|+|+++.+++.++++... ..+++++.+|+...++.
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~- 84 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP- 84 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC-
Confidence 34566778888889999999999999999999886 35899999999999999988432 34899999998876542
Q ss_pred hhhhHHhhhcCCCCcceEeecCCCcC-------cHHHHHHhccCCCc
Q 015990 204 HMLSLFERRKSSSGFAKVVANIPFNI-------STDVIKQLLPMGDI 243 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i-------~s~il~~L~~~g~~ 243 (397)
.+.+|.|+++..+.. ...+...|.++|.+
T Consensus 85 -----------~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 120 (241)
T PRK08317 85 -----------DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRV 120 (241)
T ss_pred -----------CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEE
Confidence 357899988765432 22345556666654
No 111
>PLN02672 methionine S-methyltransferase
Probab=98.83 E-value=1.1e-08 Score=113.56 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC------------------CceEEEEccccccch
Q 015990 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI------------------DQLKVLQEDFVKCHI 201 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~------------------~~v~ii~gD~~~~~~ 201 (397)
+.+|||+|||+|.++..+++. .++|+|+|+|+++++.|++|...+ ++++++++|..+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999986 368999999999999999998643 268999999876421
Q ss_pred hhhhhhHHhhhcCCCCcceEeecCCCc
Q 015990 202 RSHMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
. ...++|+||+||||-
T Consensus 199 ~-----------~~~~fDlIVSNPPYI 214 (1082)
T PLN02672 199 D-----------NNIELDRIVGCIPQI 214 (1082)
T ss_pred c-----------cCCceEEEEECCCcC
Confidence 0 113699999999984
No 112
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.83 E-value=5.9e-09 Score=103.96 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhh-
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS- 203 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~- 203 (397)
..+++.++++++..++ .|||+.||+|++|..|++.+.+|+|||+++++++.|++|+..++ |++++.+|+.++...-
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~ 261 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALA 261 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHC
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHH
Confidence 5566667777776665 79999999999999999999999999999999999999998765 9999999887653210
Q ss_pred ---hhhhHHhhhcCCCCcceEeecCCCcCcHH-HHHHh
Q 015990 204 ---HMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQL 237 (397)
Q Consensus 204 ---~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~-il~~L 237 (397)
.+............+|.|+.|||-.-..+ ++..+
T Consensus 262 ~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 262 KAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp CS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred hhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 00000000001235799999999865444 44443
No 113
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.82 E-value=1.9e-08 Score=98.67 Aligned_cols=83 Identities=25% Similarity=0.179 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC-------CceEEEEcccc
Q 015990 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFV 197 (397)
Q Consensus 128 ~i~~~i~~~~~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~-------~~v~ii~gD~~ 197 (397)
.+++.+++++.. .++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.++++.... .++++..+|+.
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 455667777653 25779999999999999999999999999999999999999987542 25778888865
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecC
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANI 225 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (397)
+. .+.+|+|++.-
T Consensus 208 ~l---------------~~~fD~Vv~~~ 220 (315)
T PLN02585 208 SL---------------SGKYDTVTCLD 220 (315)
T ss_pred hc---------------CCCcCEEEEcC
Confidence 43 14689888753
No 114
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.82 E-value=2e-08 Score=94.56 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEcccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~ 197 (397)
.+.+.....+...+...++++|||||||+|+.+.+++.. +++|+++|+|+++++.|+++++..+ +++++.||+.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 456666666666667777889999999999999988874 4699999999999999999987653 7999999998
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCC---Cc-CcHHHHHHhccCCCce
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIP---FN-ISTDVIKQLLPMGDIF 244 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP---y~-i~s~il~~L~~~g~~~ 244 (397)
+.-. .+.+. ...+.||.|+.|.+ |. ....++..+.++|.++
T Consensus 131 ~~L~-----~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii 175 (234)
T PLN02781 131 SALD-----QLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIA 175 (234)
T ss_pred HHHH-----HHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 7521 11110 01257999998853 31 1223445555655443
No 115
>PRK06922 hypothetical protein; Provisional
Probab=98.81 E-value=2.4e-08 Score=104.94 Aligned_cols=82 Identities=11% Similarity=0.290 Sum_probs=65.0
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhc
Q 015990 137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 137 ~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
++..++.+|||||||+|.++..+++. +.+|+|+|+++.|++.|+++.... .+++++++|+.+++.. .
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~----------f 483 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS----------F 483 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc----------c
Confidence 34456889999999999999988875 569999999999999999886543 3788899999876410 0
Q ss_pred CCCCcceEeecCCCc
Q 015990 214 SSSGFAKVVANIPFN 228 (397)
Q Consensus 214 ~~~~~d~Vv~NlPy~ 228 (397)
..+.+|+|++|.+++
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 236799999997664
No 116
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.80 E-value=3.7e-08 Score=91.73 Aligned_cols=84 Identities=26% Similarity=0.280 Sum_probs=65.4
Q ss_pred HHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchh
Q 015990 129 INDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (397)
Q Consensus 129 i~~~i~~~~~---~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~ 202 (397)
..+.+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.|++++... +++++..+|+...
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--- 124 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--- 124 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc---
Confidence 4445555554 356789999999999999999999889999999999999999987643 3688999994221
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCC
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
.+.+|+|+++-.+
T Consensus 125 ------------~~~fD~v~~~~~l 137 (230)
T PRK07580 125 ------------LGRFDTVVCLDVL 137 (230)
T ss_pred ------------cCCcCEEEEcchh
Confidence 2568998876544
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=2.1e-08 Score=103.19 Aligned_cols=83 Identities=11% Similarity=0.201 Sum_probs=69.7
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhh
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~ 206 (397)
..+..+.+.++++|||+|||+|..|..+++. +++|+|+|+++.+++.+++++...+ +++++++|+.++..
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----- 315 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP----- 315 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc-----
Confidence 4455667788999999999999999988874 4589999999999999999987654 78999999987631
Q ss_pred hHHhhhcCCCCcceEeecCCC
Q 015990 207 SLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy 227 (397)
...||.|+.|+|+
T Consensus 316 --------~~~fD~Vl~D~Pc 328 (445)
T PRK14904 316 --------EEQPDAILLDAPC 328 (445)
T ss_pred --------CCCCCEEEEcCCC
Confidence 2479999999996
No 118
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=1.9e-08 Score=102.95 Aligned_cols=89 Identities=13% Similarity=0.248 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhh
Q 015990 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS 203 (397)
Q Consensus 129 i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~ 203 (397)
....+...+++.++++|||+|||+|..|..++.. +++|+|+|+++.+++.++++++..+ +++++++|+.+++..
T Consensus 225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~- 303 (431)
T PRK14903 225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY- 303 (431)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh-
Confidence 3345556678889999999999999999999985 4699999999999999999987654 689999999876410
Q ss_pred hhhhHHhhhcCCCCcceEeecCCCc
Q 015990 204 HMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
..+.||.|+.|.|+.
T Consensus 304 ----------~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 304 ----------VQDTFDRILVDAPCT 318 (431)
T ss_pred ----------hhccCCEEEECCCCC
Confidence 125799999999983
No 119
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.80 E-value=7e-08 Score=85.61 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=83.6
Q ss_pred cCCCChHHHHHHHHhcCCCccccCCCccCCCHHHHHHHHHHhc---CCC-CCEEEEEcCcccHHHHHHHHcCC--cEEEE
Q 015990 96 SQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAA---VQE-GDIVLEIGPGTGSLTNVLLNAGA--TVLAI 169 (397)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~k~~GQnfl~~~~i~~~i~~~~~---~~~-~~~VLEIG~G~G~lt~~La~~~~--~V~~v 169 (397)
-|+..|+....-++++|.....+||. -....+++++.+... +.+ .++|||+|||.|.+...|++.+. +++||
T Consensus 20 yWD~~Y~~El~Nfr~hgd~GEvWFg~--~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~Gv 97 (227)
T KOG1271|consen 20 YWDAAYELELTNFREHGDEGEVWFGE--DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGV 97 (227)
T ss_pred HHHHHHHHHHhhcccCCCccceecCC--cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCcccc
Confidence 56777888888888999999999996 445666777766655 333 34999999999999999999864 69999
Q ss_pred eCCHHHHHHHHHHhccCC---ceEEEEccccccch
Q 015990 170 EKDQHMVGLVRERFASID---QLKVLQEDFVKCHI 201 (397)
Q Consensus 170 E~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~ 201 (397)
|.++.+++.|+...+..+ .+++.+.|+.+.++
T Consensus 98 DYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~ 132 (227)
T KOG1271|consen 98 DYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF 132 (227)
T ss_pred ccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc
Confidence 999999999988776543 49999999988643
No 120
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.80 E-value=3.6e-08 Score=93.73 Aligned_cols=91 Identities=30% Similarity=0.310 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
..++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..++ +. |...+.. ....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~----~~~~~~~------------~~~~ 179 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VE----LNVYLPQ------------GDLK 179 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CC----ceEEEcc------------CCCC
Confidence 35788999999999999999888876 59999999999999999986543 20 1111110 0125
Q ss_pred cceEeecCCCcCcH----HHHHHhccCCCceee
Q 015990 218 FAKVVANIPFNIST----DVIKQLLPMGDIFSE 246 (397)
Q Consensus 218 ~d~Vv~NlPy~i~s----~il~~L~~~g~~~~~ 246 (397)
+|+|++|+...... .+...|.++|.++..
T Consensus 180 fD~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 180 ADVIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 89999997654333 344556677766543
No 121
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.79 E-value=1.7e-08 Score=94.08 Aligned_cols=89 Identities=26% Similarity=0.368 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchh
Q 015990 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (397)
Q Consensus 128 ~i~~~i~~~~~~---~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~ 202 (397)
.+...+++.+.. ..+.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++.. +++.++.+|+.+.++.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~ 95 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLPLE 95 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCCCC
Confidence 344445544432 345789999999999999999874 478999999999999998875 3788999999887542
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
.+.+|+|+++...+..
T Consensus 96 ------------~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 96 ------------DSSFDLIVSNLALQWC 111 (240)
T ss_pred ------------CCceeEEEEhhhhhhc
Confidence 3579999998766543
No 122
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.79 E-value=3.3e-08 Score=89.86 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=63.5
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhhHHh
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFE 210 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~~~~ 210 (397)
.+++.++..++.++||+|||.|.-+.+||++|..|+|+|+++..++.+++..+..+ +++....|+.+..+.
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-------- 92 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-------- 92 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T--------
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc--------
Confidence 45566666677899999999999999999999999999999999999888765444 688999999887642
Q ss_pred hhcCCCCcceEeecCC
Q 015990 211 RRKSSSGFAKVVANIP 226 (397)
Q Consensus 211 ~~~~~~~~d~Vv~NlP 226 (397)
..+|+|++...
T Consensus 93 -----~~yD~I~st~v 103 (192)
T PF03848_consen 93 -----EEYDFIVSTVV 103 (192)
T ss_dssp -----TTEEEEEEESS
T ss_pred -----CCcCEEEEEEE
Confidence 46888887543
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.79 E-value=2.3e-08 Score=102.55 Aligned_cols=93 Identities=14% Similarity=0.237 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~ 202 (397)
.....++..+++.++++|||+|||+|..|..+++. .++|+|+|+++.+++.+++++...+ +++++++|+.+....
T Consensus 239 ~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 239 RSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 34445566778889999999999999999999986 3589999999999999999987654 799999999876411
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCCc
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
.. ...+.||.|+.|.|..
T Consensus 319 ~~--------~~~~~fD~Vl~DaPCS 336 (434)
T PRK14901 319 KP--------QWRGYFDRILLDAPCS 336 (434)
T ss_pred cc--------cccccCCEEEEeCCCC
Confidence 00 0125799999999953
No 124
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.78 E-value=2.9e-08 Score=98.09 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh
Q 015990 127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 127 ~~i~~~i~~~~~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~ 203 (397)
+.+.+.+++.+.+ .++.+|||||||+|.++..+++. +.+|+++|++++|++.|+++.. ..+++++.+|+.+.++.
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp~~- 175 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLPFP- 175 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCCCC-
Confidence 4455556666655 35789999999999999998875 4689999999999999998864 24789999999887642
Q ss_pred hhhhHHhhhcCCCCcceEeecCCCcC-------cHHHHHHhccCCCc
Q 015990 204 HMLSLFERRKSSSGFAKVVANIPFNI-------STDVIKQLLPMGDI 243 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i-------~s~il~~L~~~g~~ 243 (397)
.+.+|+|+++..++. ..++.+.|.++|.+
T Consensus 176 -----------~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~L 211 (340)
T PLN02490 176 -----------TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKA 211 (340)
T ss_pred -----------CCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEE
Confidence 357999998865432 23456677777765
No 125
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.77 E-value=3.5e-08 Score=97.28 Aligned_cols=101 Identities=21% Similarity=0.326 Sum_probs=72.8
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHH--hc-cCCceEEEEccccccchhhhhh
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRER--FA-SIDQLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~--~~-~~~~v~ii~gD~~~~~~~~~~~ 206 (397)
+.+...++..++.+|||||||+|+++..++..+. .|+|||.++.++..++.. .. ...+++++.+|+.+++.
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----- 186 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----- 186 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-----
Confidence 3455566656788999999999999999999865 699999999998764432 22 23489999999988754
Q ss_pred hHHhhhcCCCCcceEeec-CCCcCcH------HHHHHhccCCCce
Q 015990 207 SLFERRKSSSGFAKVVAN-IPFNIST------DVIKQLLPMGDIF 244 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~N-lPy~i~s------~il~~L~~~g~~~ 244 (397)
.+.||.|+++ .-|++.+ .+.+.|.++|.++
T Consensus 187 --------~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 187 --------LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred --------cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEE
Confidence 2578999875 3344432 3445566666554
No 126
>PRK04148 hypothetical protein; Provisional
Probab=98.76 E-value=5.7e-08 Score=83.07 Aligned_cols=93 Identities=14% Similarity=0.227 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~ 206 (397)
.+.+.|.+.+...++.+|||||||.|. ++..|++.|..|+|+|+|+..++.++++ .++++.+|..+.++.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~---- 73 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLE---- 73 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHH----
Confidence 355667777766667899999999996 8999999999999999999999988876 378999999988764
Q ss_pred hHHhhhcCCCCcceEee-cCCCcCcHHHHHH
Q 015990 207 SLFERRKSSSGFAKVVA-NIPFNISTDVIKQ 236 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~-NlPy~i~s~il~~ 236 (397)
....+|+|.+ ++|-.+..+++.-
T Consensus 74 -------~y~~a~liysirpp~el~~~~~~l 97 (134)
T PRK04148 74 -------IYKNAKLIYSIRPPRDLQPFILEL 97 (134)
T ss_pred -------HHhcCCEEEEeCCCHHHHHHHHHH
Confidence 2246777765 4666666666543
No 127
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.75 E-value=4.3e-08 Score=98.05 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=71.8
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccc
Q 015990 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~ 198 (397)
|+.|+. .+++.+....+..+||||||+|..+..+|+. ...++|||+++.+++.|.+++... +|+.++++|+..
T Consensus 107 ~~~d~~---~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ 183 (390)
T PRK14121 107 YILDID---NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL 183 (390)
T ss_pred ccCCHH---HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH
Confidence 455543 3344445556679999999999999999987 569999999999999998887654 499999999976
Q ss_pred cchhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
+... ...+.+|.|+.|.|.-|
T Consensus 184 ll~~----------~~~~s~D~I~lnFPdPW 204 (390)
T PRK14121 184 LLEL----------LPSNSVEKIFVHFPVPW 204 (390)
T ss_pred hhhh----------CCCCceeEEEEeCCCCc
Confidence 5210 12367899999987643
No 128
>PLN03075 nicotianamine synthase; Provisional
Probab=98.75 E-value=1.2e-07 Score=91.71 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=89.0
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHH--c--CCcEEEEeCCHHHHHHHHHHhcc-C---CceEEEEccccccchhh
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--A--GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La~--~--~~~V~~vE~d~~~i~~a~~~~~~-~---~~v~ii~gD~~~~~~~~ 203 (397)
.++......++++|+|||||.|.+|..+.. . +.+++++|+|+++++.|++.+.. . ++++|..+|+.+...
T Consensus 114 ~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-- 191 (296)
T PLN03075 114 DLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-- 191 (296)
T ss_pred HHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc--
Confidence 334444444778999999998866544333 2 55899999999999999999843 2 379999999988531
Q ss_pred hhhhHHhhhcCCCCcceEeecCCCcC--------cHHHHHHhccCCCceeeeEEeeeHHHHHHHccCCCCCCCccceeee
Q 015990 204 HMLSLFERRKSSSGFAKVVANIPFNI--------STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIF 275 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i--------~s~il~~L~~~g~~~~~~~lm~Qkeva~rl~~a~pg~k~y~~lsv~ 275 (397)
....||+|+.+.--++ ...+.+.|.++|.++..+ ......+. |.....
T Consensus 192 ----------~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~-----~~G~r~~L--------Yp~v~~- 247 (296)
T PLN03075 192 ----------SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS-----AHGARAFL--------YPVVDP- 247 (296)
T ss_pred ----------ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec-----ccchHhhc--------CCCCCh-
Confidence 1257999988731122 134555666766543221 12222332 111000
Q ss_pred eecccCCeEeeeeCCCCccCCCCCceEEEEEEecc
Q 015990 276 VNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQ 310 (397)
Q Consensus 276 ~q~~~~~~~~~~v~~~~F~P~P~VdSavv~l~~~~ 310 (397)
.+.+ .|++ -..++|.++|.-+||-.+.+.
T Consensus 248 ----~~~~-gf~~-~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 248 ----CDLR-GFEV-LSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred ----hhCC-CeEE-EEEECCCCCceeeEEEEEeec
Confidence 0000 1111 122789999999999887754
No 129
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.74 E-value=6.3e-08 Score=90.29 Aligned_cols=88 Identities=22% Similarity=0.322 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccC---CceEEEEcccccc
Q 015990 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC 199 (397)
Q Consensus 126 ~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~ 199 (397)
.......++..+...++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++... ++++++.+|+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 34556667777777778899999999999999999875 79999999999999999987642 4789999999876
Q ss_pred chhhhhhhHHhhhcCCCCcceEeecC
Q 015990 200 HIRSHMLSLFERRKSSSGFAKVVANI 225 (397)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (397)
+. ..+.+|+|+.+.
T Consensus 116 ~~------------~~~~~D~I~~~~ 129 (239)
T PRK00216 116 PF------------PDNSFDAVTIAF 129 (239)
T ss_pred CC------------CCCCccEEEEec
Confidence 53 225688888653
No 130
>PRK00811 spermidine synthase; Provisional
Probab=98.73 E-value=5.9e-08 Score=93.96 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhcc-------CCceEEEEccccccchhhhhhhHHh
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE 210 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~-~-~~V~~vE~d~~~i~~a~~~~~~-------~~~v~ii~gD~~~~~~~~~~~~~~~ 210 (397)
..+++||+||||.|.++..++++ + .+|++||+|+.+++.|++.+.. .++++++.+|+.++-..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-------- 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-------- 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--------
Confidence 35679999999999999999986 3 5899999999999999998742 35899999999875321
Q ss_pred hhcCCCCcceEeecC
Q 015990 211 RRKSSSGFAKVVANI 225 (397)
Q Consensus 211 ~~~~~~~~d~Vv~Nl 225 (397)
..+.+|+|++|+
T Consensus 147 ---~~~~yDvIi~D~ 158 (283)
T PRK00811 147 ---TENSFDVIIVDS 158 (283)
T ss_pred ---CCCcccEEEECC
Confidence 236799999985
No 131
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.73 E-value=3.4e-08 Score=106.92 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=73.4
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC----ceEEEEcccc
Q 015990 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~----~v~ii~gD~~ 197 (397)
|..|....+..+..+ .++++|||+|||+|.++..++..|+ +|++||+|+.+++.|++|+..++ +++++++|+.
T Consensus 522 ~flDqr~~R~~~~~~--~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 522 LFLDHRPTRRMIGQM--AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred ECHHHHHHHHHHHHh--cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 444554444444433 3578999999999999999999876 69999999999999999987542 6899999997
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
++... ....||+||.||||...
T Consensus 600 ~~l~~-----------~~~~fDlIilDPP~f~~ 621 (702)
T PRK11783 600 AWLKE-----------AREQFDLIFIDPPTFSN 621 (702)
T ss_pred HHHHH-----------cCCCcCEEEECCCCCCC
Confidence 65211 13579999999998643
No 132
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.72 E-value=1.2e-07 Score=88.10 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=55.1
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------cCCceEEEEcccc
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFV 197 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~--------------~~~~v~ii~gD~~ 197 (397)
..+..+...++.+|||+|||.|.-+.+|+++|.+|+|||+++.+++.+.+... ...+++++++|+.
T Consensus 25 ~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~ 104 (213)
T TIGR03840 25 KHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF 104 (213)
T ss_pred HHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence 34444444466799999999999999999999999999999999998644221 1237899999998
Q ss_pred ccch
Q 015990 198 KCHI 201 (397)
Q Consensus 198 ~~~~ 201 (397)
+++.
T Consensus 105 ~~~~ 108 (213)
T TIGR03840 105 ALTA 108 (213)
T ss_pred CCCc
Confidence 8753
No 133
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.72 E-value=8.6e-08 Score=88.74 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
+.++++|||||||+|.++..+++.. ++|+|||+++ + ...++++++++|+.+....+.+.+. ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~----~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLER----VGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHH----hCC
Confidence 4678899999999999999999873 5899999998 2 1225799999999886422111111 123
Q ss_pred CCcceEeecC
Q 015990 216 SGFAKVVANI 225 (397)
Q Consensus 216 ~~~d~Vv~Nl 225 (397)
..+|+|++|+
T Consensus 116 ~~~D~V~S~~ 125 (209)
T PRK11188 116 SKVQVVMSDM 125 (209)
T ss_pred CCCCEEecCC
Confidence 6799999997
No 134
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.71 E-value=3.7e-08 Score=90.29 Aligned_cols=105 Identities=19% Similarity=0.302 Sum_probs=66.5
Q ss_pred CCCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhccCC--
Q 015990 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID-- 187 (397)
Q Consensus 112 ~~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~--~~~~V~~vE~d~~~i~~a~~~~~~~~-- 187 (397)
|....-.+..-|.......++.--.-.+.+++.|+|..||.|.++..+++ +++.|+|+|++|.+++.+++++..++
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~ 151 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE 151 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC
Confidence 44333334443333333333322222357899999999999999999999 57789999999999999999987663
Q ss_pred -ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 188 -~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
++.++++|+.++.. ...+|.|+.|+|...
T Consensus 152 ~~i~~~~~D~~~~~~-------------~~~~drvim~lp~~~ 181 (200)
T PF02475_consen 152 NRIEVINGDAREFLP-------------EGKFDRVIMNLPESS 181 (200)
T ss_dssp TTEEEEES-GGG----------------TT-EEEEEE--TSSG
T ss_pred CeEEEEcCCHHHhcC-------------ccccCEEEECChHHH
Confidence 78999999988743 257899999999654
No 135
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.5e-07 Score=84.84 Aligned_cols=94 Identities=26% Similarity=0.434 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccC---CceEEEEcccccc
Q 015990 126 NSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC 199 (397)
Q Consensus 126 ~~~i~~~i~~~~~~--~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~ 199 (397)
...+-+.+.+.+.. -.+.++||+.+|+|.++.+.+.+|+ +++.||.|.+.+..+++|.+.. ++.+++..|+...
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~ 105 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA 105 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence 34566777777765 5788999999999999999999976 8999999999999999998653 4899999999843
Q ss_pred chhhhhhhHHhhhcCCCCcceEeecCCCc
Q 015990 200 HIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
-.. . ...+.||+|+.+|||+
T Consensus 106 L~~------~---~~~~~FDlVflDPPy~ 125 (187)
T COG0742 106 LKQ------L---GTREPFDLVFLDPPYA 125 (187)
T ss_pred HHh------c---CCCCcccEEEeCCCCc
Confidence 110 0 1123599999999998
No 136
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.70 E-value=1.2e-07 Score=87.39 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~ 203 (397)
......+++.+...++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++....+++++.+|+.+.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-- 102 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF-- 102 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC--
Confidence 3455667777777788999999999999999999874 38999999999999999987633478999999988653
Q ss_pred hhhhHHhhhcCCCCcceEeecCC
Q 015990 204 HMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
..+.+|+|+++..
T Consensus 103 ----------~~~~~D~i~~~~~ 115 (223)
T TIGR01934 103 ----------EDNSFDAVTIAFG 115 (223)
T ss_pred ----------CCCcEEEEEEeee
Confidence 2257899887644
No 137
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.70 E-value=1e-07 Score=89.21 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhh
Q 015990 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS 203 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~ 203 (397)
+++..++.+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+ +++++.+|+.+....
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 110 (233)
T PRK05134 32 INPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE- 110 (233)
T ss_pred hhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-
Confidence 344555666666666678899999999999999999988899999999999999998875433 577888887665311
Q ss_pred hhhhHHhhhcCCCCcceEeecCC
Q 015990 204 HMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
..+.+|+|+++..
T Consensus 111 ----------~~~~fD~Ii~~~~ 123 (233)
T PRK05134 111 ----------HPGQFDVVTCMEM 123 (233)
T ss_pred ----------cCCCccEEEEhhH
Confidence 2357999987643
No 138
>PRK06202 hypothetical protein; Provisional
Probab=98.70 E-value=7e-08 Score=90.48 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=60.4
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhh
Q 015990 138 AVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 138 ~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~ 211 (397)
...++.+|||+|||+|.++..|++. + .+|+|+|++++|++.|+++... .++++..+|+..++.
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~---------- 125 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVA---------- 125 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccccc----------
Confidence 3356789999999999999988752 3 4899999999999999987643 356777776655532
Q ss_pred hcCCCCcceEeecCCCcC
Q 015990 212 RKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i 229 (397)
..+.+|+|++|..++.
T Consensus 126 --~~~~fD~V~~~~~lhh 141 (232)
T PRK06202 126 --EGERFDVVTSNHFLHH 141 (232)
T ss_pred --cCCCccEEEECCeeec
Confidence 1257999999977643
No 139
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=7.1e-08 Score=90.64 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccc
Q 015990 127 SEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (397)
Q Consensus 127 ~~i~~~i~~~~~---~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~ 198 (397)
+.+++.+++.+. ...+..+||+|||+|.++..++.. .+.|+|||.++.++..|.+|.... +.+.+++-+...
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 556666666553 335668999999999999999884 568999999999999999998654 578888665543
Q ss_pred cchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHHHhcc
Q 015990 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239 (397)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~ 239 (397)
-....+- ...++.|.+++|+||--..+ ...+.+
T Consensus 211 d~~~~~~-------l~~~~~dllvsNPPYI~~dD-~~~l~~ 243 (328)
T KOG2904|consen 211 DASDEHP-------LLEGKIDLLVSNPPYIRKDD-NRQLKP 243 (328)
T ss_pred ccccccc-------cccCceeEEecCCCcccccc-hhhcCc
Confidence 3221110 02367899999999976666 444443
No 140
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.69 E-value=1.8e-07 Score=87.22 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------cCCceEEEEccccc
Q 015990 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK 198 (397)
Q Consensus 133 i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~--------------~~~~v~ii~gD~~~ 198 (397)
.+..+.+.++.+|||+|||.|.-+.+|+++|.+|+|||+++.+++.+..... ...++++.++|+.+
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence 3333444567799999999999999999999999999999999998643211 12478999999998
Q ss_pred cch
Q 015990 199 CHI 201 (397)
Q Consensus 199 ~~~ 201 (397)
+..
T Consensus 109 l~~ 111 (218)
T PRK13255 109 LTA 111 (218)
T ss_pred CCc
Confidence 753
No 141
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.67 E-value=6.6e-08 Score=87.21 Aligned_cols=78 Identities=23% Similarity=0.286 Sum_probs=61.5
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHH
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~-~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~ 209 (397)
+.|.+++ .++.+|||+|||.|.+...|.+ ++.+.+|||+|++.+..+.++ .+.++++|+.+.- ..
T Consensus 5 ~~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL-~~------ 70 (193)
T PF07021_consen 5 QIIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGL-AD------ 70 (193)
T ss_pred HHHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhH-hh------
Confidence 3455554 4688999999999999999988 578999999999998888775 5789999998742 11
Q ss_pred hhhcCCCCcceEeecC
Q 015990 210 ERRKSSSGFAKVVANI 225 (397)
Q Consensus 210 ~~~~~~~~~d~Vv~Nl 225 (397)
+..+.||.||.+-
T Consensus 71 ---f~d~sFD~VIlsq 83 (193)
T PF07021_consen 71 ---FPDQSFDYVILSQ 83 (193)
T ss_pred ---CCCCCccEEehHh
Confidence 2457899998764
No 142
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.66 E-value=3.1e-08 Score=91.07 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=90.1
Q ss_pred HHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccC----CceEEEEccccccchhhhhhhHH
Q 015990 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLF 209 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~----~~v~ii~gD~~~~~~~~~~~~~~ 209 (397)
+...++.|++|||...|.|+.++..+++|+ +|+.||.|+..++.|+-|--.. .+++++.||+.++-..
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~------- 200 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD------- 200 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-------
Confidence 345667899999999999999999999998 9999999999999987663221 2789999999876221
Q ss_pred hhhcCCCCcceEeecCC-CcCcH---------HHHHHhccCCCceeee--------EEeeeHHHHHHHc
Q 015990 210 ERRKSSSGFAKVVANIP-FNIST---------DVIKQLLPMGDIFSEV--------VLLLQEETALRLV 260 (397)
Q Consensus 210 ~~~~~~~~~d~Vv~NlP-y~i~s---------~il~~L~~~g~~~~~~--------~lm~Qkeva~rl~ 260 (397)
.....||+|+-+|| |..+. ++.+.|+++|.+|... ..=+|+++++||.
T Consensus 201 ---~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr 266 (287)
T COG2521 201 ---FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR 266 (287)
T ss_pred ---CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence 13367999999999 45544 4567788888877422 3557899999997
No 143
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.65 E-value=1.1e-07 Score=97.35 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC-c--eEEEEccccccchh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-Q--LKVLQEDFVKCHIR 202 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~-~--v~ii~gD~~~~~~~ 202 (397)
.....++..+++.++++|||+|||+|..|..+++. .++|+|+|+++++++.++++++..+ . +++..+|.......
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 34456777788899999999999999999999986 3699999999999999999987654 3 34466776544320
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCCc
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
.....||.|+.|.|+.
T Consensus 305 ----------~~~~~fD~VllDaPcS 320 (426)
T TIGR00563 305 ----------AENEQFDRILLDAPCS 320 (426)
T ss_pred ----------ccccccCEEEEcCCCC
Confidence 0125799999999965
No 144
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.63 E-value=1.3e-07 Score=87.72 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccc
Q 015990 125 LNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK 198 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~ 198 (397)
.++..++.+.+.+.. ..+.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++...+ ++++..+|+.+
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 104 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVED 104 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHH
Confidence 455556666666652 347899999999999999999888899999999999999999876543 58888999877
Q ss_pred cchhhhhhhHHhhhcCCCCcceEeecC
Q 015990 199 CHIRSHMLSLFERRKSSSGFAKVVANI 225 (397)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (397)
.... ..+.+|+|+++-
T Consensus 105 ~~~~-----------~~~~~D~i~~~~ 120 (224)
T TIGR01983 105 LAEK-----------GAKSFDVVTCME 120 (224)
T ss_pred hhcC-----------CCCCccEEEehh
Confidence 6432 125789988764
No 145
>PLN02476 O-methyltransferase
Probab=98.63 E-value=1.7e-07 Score=90.02 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEcccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~ 197 (397)
.+++...+.+...+...++++|||||||+|+.|.+++.. +++|+++|.|++.++.|+++++..+ +++++.||+.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 567777777777778888899999999999999999973 5589999999999999999997653 8999999998
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCCCcCc----HHHHHHhccCCCce
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS----TDVIKQLLPMGDIF 244 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~----s~il~~L~~~g~~~ 244 (397)
+.-. .+..+ ...+.||.|+-+.+-.-- ..++..|.++|.++
T Consensus 181 e~L~-----~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV 225 (278)
T PLN02476 181 ESLK-----SMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIV 225 (278)
T ss_pred HHHH-----HHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 7521 11110 012579999988763211 22344445555443
No 146
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.63 E-value=1.4e-07 Score=86.94 Aligned_cols=97 Identities=23% Similarity=0.270 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEcccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~ 197 (397)
.+++...+.+...+...+..+|||||||+|+.|.++++. +++|+++|+|++.++.|++++...+ +++++.||+.
T Consensus 28 ~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp SHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred ccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 344555555544455556789999999999999999984 6799999999999999999987654 8999999998
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCC
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
+.-. .+... ...++||.|+-+-.
T Consensus 108 ~~l~-----~l~~~-~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 108 EVLP-----ELAND-GEEGQFDFVFIDAD 130 (205)
T ss_dssp HHHH-----HHHHT-TTTTSEEEEEEEST
T ss_pred hhHH-----HHHhc-cCCCceeEEEEccc
Confidence 7621 11111 01257999998754
No 147
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.61 E-value=9.2e-08 Score=84.65 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=56.9
Q ss_pred CEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
+.|+|+.||.|.-|..+|+...+|+|||+|+..++.|+.|++-.+ +++++++|+.+...... ....+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~---------~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK---------SNKIFD 71 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------------S
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc---------cccccc
Confidence 379999999999999999999999999999999999999987664 89999999988632210 111279
Q ss_pred eEeecCCCcC
Q 015990 220 KVVANIPFNI 229 (397)
Q Consensus 220 ~Vv~NlPy~i 229 (397)
.|+.+||+.-
T Consensus 72 ~vFlSPPWGG 81 (163)
T PF09445_consen 72 VVFLSPPWGG 81 (163)
T ss_dssp EEEE---BSS
T ss_pred EEEECCCCCC
Confidence 9999999854
No 148
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.60 E-value=1.6e-07 Score=91.01 Aligned_cols=94 Identities=13% Similarity=0.272 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccch
Q 015990 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~ 201 (397)
..|.+++.+++.+.+.+++.+||.+||.|..|..+++.. ++|+|+|.|+++++.+++++...++++++++|+.++..
T Consensus 3 H~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 3 HIPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE 82 (296)
T ss_pred CccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence 346778899999999999999999999999999999873 68999999999999999988654589999999988742
Q ss_pred hhhhhhHHhhhcCCCCcceEeecCC
Q 015990 202 RSHMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
. ... ....+|.|+.|+-
T Consensus 83 ~------l~~--~~~~vDgIl~DLG 99 (296)
T PRK00050 83 V------LAE--GLGKVDGILLDLG 99 (296)
T ss_pred H------HHc--CCCccCEEEECCC
Confidence 1 110 1126889998875
No 149
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.9e-07 Score=92.52 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC---------------------------------------
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--------------------------------------- 164 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--------------------------------------- 164 (397)
-..+.++..|+..++..++..++|.=||+|++.+..|-.+.
T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 34588999999999999999999999999999988877653
Q ss_pred --cEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCc
Q 015990 165 --TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 165 --~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
.++|+|+|+++++.|+.|....+ -+++.++|+..+... ...+++||+||||.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------------~~~~gvvI~NPPYG 310 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------------LEEYGVVISNPPYG 310 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------------CCcCCEEEeCCCcc
Confidence 27799999999999999987654 799999999988532 14689999999995
No 150
>PRK01581 speE spermidine synthase; Validated
Probab=98.58 E-value=3.1e-07 Score=90.89 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHh---cCCCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHh--c-------cCCceE
Q 015990 125 LNSEINDQLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLK 190 (397)
Q Consensus 125 ~~~~i~~~i~~~~---~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~--~-------~~~~v~ 190 (397)
.|+.++..++-.. ....+.+||+||||+|..+..+++.. .+|++||+|+++++.|++.. . ..++++
T Consensus 131 ~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~ 210 (374)
T PRK01581 131 VDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVN 210 (374)
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceE
Confidence 3566655544432 23456799999999999999998864 69999999999999999721 1 235999
Q ss_pred EEEccccccchhhhhhhHHhhhcCCCCcceEeecCCC
Q 015990 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 191 ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
++.+|+.++-.. ..+.+|+|+.|+|.
T Consensus 211 vvi~Da~~fL~~-----------~~~~YDVIIvDl~D 236 (374)
T PRK01581 211 VHVCDAKEFLSS-----------PSSLYDVIIIDFPD 236 (374)
T ss_pred EEECcHHHHHHh-----------cCCCccEEEEcCCC
Confidence 999999876321 23579999999875
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.58 E-value=2e-07 Score=100.97 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHc-----------------------------------------
Q 015990 125 LNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA----------------------------------------- 162 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~-~~~~~VLEIG~G~G~lt~~La~~----------------------------------------- 162 (397)
+.+.++..|+..++. .++..++|.+||+|++.+..+..
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 568899999998887 66889999999999998777542
Q ss_pred ---CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 163 ---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 163 ---~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
..+++|+|+|+++++.|++|+...+ .+++.++|+.++.... ..+.+|+||+||||..
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----------~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----------PKGPTGLVISNPPYGE 315 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----------ccCCCCEEEECCCCcC
Confidence 1269999999999999999987654 5899999998875321 1246899999999953
No 152
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.58 E-value=1.9e-07 Score=85.15 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHH
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~ 209 (397)
+.+.+.+ .++++|||+|||+|.++..+++. +..++|+|+++++++.++++ +++++++|+.+....
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~------- 70 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEA------- 70 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccc-------
Confidence 3455544 36679999999999999999875 56899999999999988652 578889998652100
Q ss_pred hhhcCCCCcceEeecCCCcCc
Q 015990 210 ERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 210 ~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
...+.+|.|++|.+++..
T Consensus 71 ---~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 71 ---FPDKSFDYVILSQTLQAT 88 (194)
T ss_pred ---cCCCCcCEEEEhhHhHcC
Confidence 023579999999776543
No 153
>PTZ00146 fibrillarin; Provisional
Probab=98.57 E-value=2.6e-07 Score=89.06 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=69.2
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccc-hhhhhhhHHhh
Q 015990 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH-IRSHMLSLFER 211 (397)
Q Consensus 136 ~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~-~~~~~~~~~~~ 211 (397)
.+.+.++++|||+|||+|+.|..+++.. ..|+|||+++++.+.+.+......|+..+.+|+.... ..
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~--------- 197 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR--------- 197 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh---------
Confidence 3457899999999999999999999973 5899999999876555554443368999999986421 10
Q ss_pred hcCCCCcceEeecCCCcCcH-----HHHHHhccCCCce
Q 015990 212 RKSSSGFAKVVANIPFNIST-----DVIKQLLPMGDIF 244 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i~s-----~il~~L~~~g~~~ 244 (397)
...+.+|+|+++...-... .+.+.|+++|.++
T Consensus 198 -~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~v 234 (293)
T PTZ00146 198 -MLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFI 234 (293)
T ss_pred -cccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEE
Confidence 0124689999987532222 2233566666553
No 154
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.57 E-value=3.6e-07 Score=84.64 Aligned_cols=111 Identities=22% Similarity=0.289 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEE-cccc
Q 015990 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQ-EDFV 197 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~-gD~~ 197 (397)
.++.....+...+...++++|||||+++|+.|.+|+.. .++++++|+|+++++.|+++++..+ .++++. +|++
T Consensus 43 ~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 43 IDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred CChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 33777777777788888999999999999999999984 4589999999999999999998764 688888 5887
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCC---C-cCcHHHHHHhccCCCcee
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIP---F-NISTDVIKQLLPMGDIFS 245 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP---y-~i~s~il~~L~~~g~~~~ 245 (397)
+.-.. ...+.||.|+.+-- | ..-..++..|.++|-++.
T Consensus 123 ~~l~~----------~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 123 DVLSR----------LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHh----------ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 76321 12478999987632 1 111233444556654443
No 155
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.54 E-value=2.2e-07 Score=86.42 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=66.2
Q ss_pred CEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
++|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++... ++++++.+|+.+.+. .+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------------~~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------------PDT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------------CCC
Confidence 47999999999999999886 468999999999999999987643 378999999866532 246
Q ss_pred cceEeecCCCc-C------cHHHHHHhccCCCce
Q 015990 218 FAKVVANIPFN-I------STDVIKQLLPMGDIF 244 (397)
Q Consensus 218 ~d~Vv~NlPy~-i------~s~il~~L~~~g~~~ 244 (397)
+|+|+++-.++ + ...+.+.|.++|.++
T Consensus 68 fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 68 YDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred CCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEE
Confidence 89988753322 1 223445566766543
No 156
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.54 E-value=2.9e-07 Score=83.56 Aligned_cols=76 Identities=17% Similarity=0.362 Sum_probs=54.8
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhc
Q 015990 137 AAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 137 ~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
..+.++++|||+|||+|.++..+++.. .+|+++|+++.+ ..++++++++|+.+.+..+..... .
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~----~ 94 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRER----V 94 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHH----h
Confidence 356788999999999999999998763 479999999865 124788999998775422111110 1
Q ss_pred CCCCcceEeecC
Q 015990 214 SSSGFAKVVANI 225 (397)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (397)
..+.+|+|++|.
T Consensus 95 ~~~~~D~V~~~~ 106 (188)
T TIGR00438 95 GDDKVDVVMSDA 106 (188)
T ss_pred CCCCccEEEcCC
Confidence 235799999885
No 157
>PLN02366 spermidine synthase
Probab=98.54 E-value=4.9e-07 Score=88.45 Aligned_cols=92 Identities=11% Similarity=0.181 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcc------CCceEEEEc
Q 015990 126 NSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQE 194 (397)
Q Consensus 126 ~~~i~~~i~~~~~---~~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~------~~~v~ii~g 194 (397)
|+..+..++..+. ...+++||+||||.|.+...+++.. .+|+.||+|+.+++.+++.+.. .++++++.+
T Consensus 73 de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~ 152 (308)
T PLN02366 73 DECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIG 152 (308)
T ss_pred cHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEC
Confidence 3445555555432 3467899999999999999999873 5899999999999999998743 358999999
Q ss_pred cccccchhhhhhhHHhhhcCCCCcceEeecCCC
Q 015990 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
|+.++-.. ...+.+|+|+.+.+.
T Consensus 153 Da~~~l~~----------~~~~~yDvIi~D~~d 175 (308)
T PLN02366 153 DGVEFLKN----------APEGTYDAIIVDSSD 175 (308)
T ss_pred hHHHHHhh----------ccCCCCCEEEEcCCC
Confidence 98765211 013579999998654
No 158
>PRK04457 spermidine synthase; Provisional
Probab=98.54 E-value=3.3e-07 Score=87.79 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhhhcC
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
.++.+|||||||.|.++..+++. +.+|++||+|+++++.|++++... ++++++.+|+.++-.. .
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-----------~ 133 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-----------H 133 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-----------C
Confidence 45678999999999999999876 568999999999999999998642 5899999998775211 2
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
...+|+|+.|.
T Consensus 134 ~~~yD~I~~D~ 144 (262)
T PRK04457 134 RHSTDVILVDG 144 (262)
T ss_pred CCCCCEEEEeC
Confidence 35789998774
No 159
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.52 E-value=3.8e-07 Score=85.04 Aligned_cols=110 Identities=19% Similarity=0.315 Sum_probs=80.0
Q ss_pred cCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--C------CcEEEEeCCHHHHHHHHHHhccC---
Q 015990 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G------ATVLAIEKDQHMVGLVRERFASI--- 186 (397)
Q Consensus 118 ~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~------~~V~~vE~d~~~i~~a~~~~~~~--- 186 (397)
++|+|-+. -+..+..+++.++.++||++||||-+|..+.+. . .+|+..|++++|+..++++....
T Consensus 81 SlGiHRlW----Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~ 156 (296)
T KOG1540|consen 81 SLGIHRLW----KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK 156 (296)
T ss_pred hcchhHHH----HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC
Confidence 45666444 345577788889999999999999999999885 2 58999999999999999987432
Q ss_pred --CceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecC-----C--CcCcHHHHHHhccCCCc
Q 015990 187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI-----P--FNISTDVIKQLLPMGDI 243 (397)
Q Consensus 187 --~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl-----P--y~i~s~il~~L~~~g~~ 243 (397)
+.+.++++|++++++++ +.+|...... + -....+..+.|+++|.+
T Consensus 157 ~~~~~~w~~~dAE~LpFdd------------~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf 210 (296)
T KOG1540|consen 157 ASSRVEWVEGDAEDLPFDD------------DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRF 210 (296)
T ss_pred cCCceEEEeCCcccCCCCC------------CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEE
Confidence 25999999999998753 5667654321 1 11122445666666644
No 160
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.7e-07 Score=82.13 Aligned_cols=110 Identities=18% Similarity=0.306 Sum_probs=88.6
Q ss_pred cCCCHHHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhccC----------
Q 015990 123 YMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---------- 186 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~--~~~~~~VLEIG~G~G~lt~~La~~----~~~V~~vE~d~~~i~~a~~~~~~~---------- 186 (397)
-+..|.+...+++.+. +++|...||+|.|+|+||..++.. |..++|||.-+++++.+++++...
T Consensus 62 ~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~ 141 (237)
T KOG1661|consen 62 TISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKL 141 (237)
T ss_pred EEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhh
Confidence 3556999999999998 899999999999999999988864 445699999999999999987531
Q ss_pred --CceEEEEccccccchhhhhhhHHhhhcCCCCcceEeec-CCCcCcHHHHHHhccCCCce
Q 015990 187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNISTDVIKQLLPMGDIF 244 (397)
Q Consensus 187 --~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy~i~s~il~~L~~~g~~~ 244 (397)
+++.++.||......+ ..++|.|... -.-.+..+++.+|+++|.++
T Consensus 142 ~~~~l~ivvGDgr~g~~e------------~a~YDaIhvGAaa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 142 KRGELSIVVGDGRKGYAE------------QAPYDAIHVGAAASELPQELLDQLKPGGRLL 190 (237)
T ss_pred ccCceEEEeCCccccCCc------------cCCcceEEEccCccccHHHHHHhhccCCeEE
Confidence 4789999999887542 3578877543 33456678999999998764
No 161
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.50 E-value=8.8e-07 Score=86.60 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccc
Q 015990 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH 200 (397)
Q Consensus 129 i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~ 200 (397)
+.+.+++.++..++.+|||||||+|.++..++++ ..+++++|. +.+++.+++++... ++++++.+|+.+.+
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 4566777778888899999999999999999987 468999998 78999999887654 37999999998654
No 162
>PRK03612 spermidine synthase; Provisional
Probab=98.49 E-value=4.1e-07 Score=95.33 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHh--c-------cCCceEEEEccccccchhhhhhhH
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLSL 208 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~--~-------~~~~v~ii~gD~~~~~~~~~~~~~ 208 (397)
.++++|||||||+|..+..++++. .+|++||+|+++++.++++. . ..++++++.+|+.++-..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~------ 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK------ 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh------
Confidence 456799999999999999999874 59999999999999999842 1 125899999999875211
Q ss_pred HhhhcCCCCcceEeecCCCc
Q 015990 209 FERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 209 ~~~~~~~~~~d~Vv~NlPy~ 228 (397)
..+++|+|+.|+|..
T Consensus 370 -----~~~~fDvIi~D~~~~ 384 (521)
T PRK03612 370 -----LAEKFDVIIVDLPDP 384 (521)
T ss_pred -----CCCCCCEEEEeCCCC
Confidence 235899999998764
No 163
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=4e-07 Score=89.56 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=68.1
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhcC
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~~-V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
..+|++|+|..+|.|.+|..+|+.|+. |+|+|+||.+++.+++|+..|+ .+..++||+.++...
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~------------ 253 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE------------ 253 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc------------
Confidence 345999999999999999999999875 9999999999999999998764 489999999988542
Q ss_pred CCCcceEeecCCCc
Q 015990 215 SSGFAKVVANIPFN 228 (397)
Q Consensus 215 ~~~~d~Vv~NlPy~ 228 (397)
.+.+|.|+.|+|..
T Consensus 254 ~~~aDrIim~~p~~ 267 (341)
T COG2520 254 LGVADRIIMGLPKS 267 (341)
T ss_pred cccCCEEEeCCCCc
Confidence 15789999999974
No 164
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.48 E-value=1.2e-06 Score=85.71 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=53.1
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhcc-CC--ceEEEEcccccc
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-ID--QLKVLQEDFVKC 199 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~-~~--~v~ii~gD~~~~ 199 (397)
.|++.+ .++.+|||+|||+|..|..|++. +.++++||+|++|++.+++++.. .+ ++..+++|+.+.
T Consensus 56 ~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 56 EIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred HHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 344443 35678999999999999999987 57999999999999999888754 23 567789999763
No 165
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.47 E-value=7.7e-07 Score=70.10 Aligned_cols=75 Identities=27% Similarity=0.428 Sum_probs=60.1
Q ss_pred EEEEEcCcccHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhcc--CCceEEEEccccccchhhhhhhHHhhhcCCCCcce
Q 015990 144 IVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~-~~~~V~~vE~d~~~i~~a~~~~~~--~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (397)
+|+|+|||.|.++..+++ ...+++++|+++.++..+++.... ..+++++.+|+.+.... ..+.+|.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-----------ADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-----------cCCceEE
Confidence 489999999999999998 467999999999999998843322 24789999998876431 2357899
Q ss_pred EeecCCCcC
Q 015990 221 VVANIPFNI 229 (397)
Q Consensus 221 Vv~NlPy~i 229 (397)
|+.|.+++.
T Consensus 70 i~~~~~~~~ 78 (107)
T cd02440 70 IISDPPLHH 78 (107)
T ss_pred EEEccceee
Confidence 999999875
No 166
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.46 E-value=4.6e-07 Score=82.81 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHhcCCC--CCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEcccccc-ch
Q 015990 125 LNSEINDQLAAAAAVQE--GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC-HI 201 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~--~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~-~~ 201 (397)
+...+.++.++.+.+.+ +.-|||||||+|..+..|.+.|...+|+|+++.|++.|.+.--. -.++.+|+-+. ++
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~Glpf 108 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGLPF 108 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCCCC
Confidence 45677778888887765 66899999999999999999999999999999999999874211 24677777543 22
Q ss_pred hhhhhhHHhhhcCCCCcceEe
Q 015990 202 RSHMLSLFERRKSSSGFAKVV 222 (397)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv 222 (397)
.++.||-+|
T Consensus 109 ------------rpGtFDg~I 117 (270)
T KOG1541|consen 109 ------------RPGTFDGVI 117 (270)
T ss_pred ------------CCCccceEE
Confidence 457888765
No 167
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=7.6e-07 Score=79.09 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=64.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
....++|||||+|..+..|++. .....+.|+++++.+.-.+....++ +++.+..|....- ..+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-------------~~~ 109 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-------------RNE 109 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-------------ccC
Confidence 3678999999999999999986 3467899999999998888776554 7889999987652 236
Q ss_pred CcceEeecCCCcCcH
Q 015990 217 GFAKVVANIPFNIST 231 (397)
Q Consensus 217 ~~d~Vv~NlPy~i~s 231 (397)
+.|+++-|+||-.++
T Consensus 110 ~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 110 SVDVLVFNPPYVPTS 124 (209)
T ss_pred CccEEEECCCcCcCC
Confidence 889999999997655
No 168
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.45 E-value=1.4e-06 Score=83.80 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcc------CCceEEEEccccccchhhhhhhHHhh
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~------~~~v~ii~gD~~~~~~~~~~~~~~~~ 211 (397)
..+++|||||||+|.++..+++.. .+++++|+|+++++.+++.+.. .++++++.+|+.++-..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~--------- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD--------- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh---------
Confidence 445699999999999999998863 5899999999999999997642 24788999988764211
Q ss_pred hcCCCCcceEeecCCCcCc-----------HHHHHHhccCCCce
Q 015990 212 RKSSSGFAKVVANIPFNIS-----------TDVIKQLLPMGDIF 244 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i~-----------s~il~~L~~~g~~~ 244 (397)
..+.+|+|+.+.+.... ..+...|.++|.++
T Consensus 142 --~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv 183 (270)
T TIGR00417 142 --TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFV 183 (270)
T ss_pred --CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEE
Confidence 23579999999874321 13345566666544
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.44 E-value=1e-06 Score=88.65 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=77.3
Q ss_pred CCCccCCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhccCC--ceEEEE
Q 015990 119 LGQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQ 193 (397)
Q Consensus 119 ~GQnfl~~~~i~~~i~~~~~~~-~~~~VLEIG~G~G~lt~~La~~-~-~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~ 193 (397)
|.-|-..++.+...+++.+... ++.+|||++||+|.++..++.. + .+|+++|+|+.+++.+++|++.++ ++++++
T Consensus 34 yqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~ 113 (382)
T PRK04338 34 YNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFN 113 (382)
T ss_pred eCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEh
Confidence 3334455567777777766533 4568999999999999999875 3 389999999999999999987653 677899
Q ss_pred ccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHHH
Q 015990 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236 (397)
Q Consensus 194 gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~ 236 (397)
+|+..+.. ....+|+|+.||| ....+.+..
T Consensus 114 ~Da~~~l~------------~~~~fD~V~lDP~-Gs~~~~l~~ 143 (382)
T PRK04338 114 KDANALLH------------EERKFDVVDIDPF-GSPAPFLDS 143 (382)
T ss_pred hhHHHHHh------------hcCCCCEEEECCC-CCcHHHHHH
Confidence 99866421 0246899999975 555555443
No 170
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=6.5e-07 Score=90.90 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=83.7
Q ss_pred CCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccc
Q 015990 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (397)
Q Consensus 119 ~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~ 196 (397)
|.-|-..-+.++..+-+++++..+..++|+.||||.++..+++..++|+|||+++++++.|+.+...++ |.++++|-+
T Consensus 361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 333333446667777888899999999999999999999999999999999999999999999988776 999999977
Q ss_pred cccchhhhhhhHHhhhcCCCCcc-eEeecCCCcCcHH-HHHHhcc
Q 015990 197 VKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTD-VIKQLLP 239 (397)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d-~Vv~NlPy~i~s~-il~~L~~ 239 (397)
++.-.. ++.. ..+.-+ ++|.|+|-.-... ++..|..
T Consensus 441 E~~~~s-----l~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~ 478 (534)
T KOG2187|consen 441 EDLFPS-----LLTP--CCDSETLVAIIDPPRKGLHMKVIKALRA 478 (534)
T ss_pred hhccch-----hccc--CCCCCceEEEECCCcccccHHHHHHHHh
Confidence 765221 1110 111233 7888999643333 3444443
No 171
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.43 E-value=8.2e-07 Score=85.15 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCcccH----HHHHHHHc-------CCcEEEEeCCHHHHHHHHHHhcc-----------------------
Q 015990 140 QEGDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRERFAS----------------------- 185 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~----lt~~La~~-------~~~V~~vE~d~~~i~~a~~~~~~----------------------- 185 (397)
.++.+|||+|||+|- ++..+++. +.+|+|+|+|+.|++.|++....
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 455799999999995 56666553 35899999999999999985311
Q ss_pred ------CCceEEEEccccccchhhhhhhHHhhhcCCCCcceEeec
Q 015990 186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (397)
Q Consensus 186 ------~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (397)
..++++.++|+.+.++. .+.+|+|++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~------------~~~fD~I~cr 210 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPP------------LGDFDLIFCR 210 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCc------------cCCCCEEEec
Confidence 02678888998876531 2578988874
No 172
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.43 E-value=1.2e-06 Score=76.33 Aligned_cols=49 Identities=31% Similarity=0.462 Sum_probs=41.4
Q ss_pred HHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHH
Q 015990 130 NDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178 (397)
Q Consensus 130 ~~~i~~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~ 178 (397)
.+.+....+ ..++.+|||||||.|.++..+++.+.+++|+|+++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh
Confidence 344444443 5678899999999999999999999999999999999988
No 173
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.39 E-value=8.4e-07 Score=85.49 Aligned_cols=92 Identities=23% Similarity=0.351 Sum_probs=72.6
Q ss_pred CccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccC---CceEEEEccc
Q 015990 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF 196 (397)
Q Consensus 121 Qnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~ 196 (397)
|.|.......+.|++...--.++.|||+|||+|.++...++.|+ +|++||.+ +|.++|++..+.+ ++++++.|.+
T Consensus 157 QDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi 235 (517)
T KOG1500|consen 157 QDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI 235 (517)
T ss_pred HHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc
Confidence 34444445556666666556788999999999999999999875 89999986 5899999988765 3899999999
Q ss_pred cccchhhhhhhHHhhhcCCCCcceEeecCC
Q 015990 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
+++.++ ++.|++|+.+-
T Consensus 236 EdieLP-------------Ek~DviISEPM 252 (517)
T KOG1500|consen 236 EDIELP-------------EKVDVIISEPM 252 (517)
T ss_pred ccccCc-------------hhccEEEeccc
Confidence 998753 57788888753
No 174
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.39 E-value=4e-08 Score=79.36 Aligned_cols=75 Identities=28% Similarity=0.374 Sum_probs=46.8
Q ss_pred EEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhHHhhhcCCCCcceE
Q 015990 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (397)
Q Consensus 146 LEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~V 221 (397)
||||||+|.++..+++. ..+++++|+|+.|++.+++++.... +...+..+..+.... ...+.||+|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY----------DPPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C----------CC----SEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc----------cccccccee
Confidence 79999999999999998 7799999999999988888876644 344444444333211 012489999
Q ss_pred eecCCCcCc
Q 015990 222 VANIPFNIS 230 (397)
Q Consensus 222 v~NlPy~i~ 230 (397)
+++-.++..
T Consensus 71 ~~~~vl~~l 79 (99)
T PF08242_consen 71 VASNVLHHL 79 (99)
T ss_dssp EEE-TTS--
T ss_pred hhhhhHhhh
Confidence 888665544
No 175
>PRK10742 putative methyltransferase; Provisional
Probab=98.36 E-value=1.7e-06 Score=81.31 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=73.7
Q ss_pred HHHHHHhcCCCCC--EEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC-----------CceEEEEcccc
Q 015990 131 DQLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFV 197 (397)
Q Consensus 131 ~~i~~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~-----------~~v~ii~gD~~ 197 (397)
+.|+++++++++. +|||.-+|+|..+..++.+|++|++||.++.+...++.++... .+++++++|+.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 4678888888888 9999999999999999999999999999999999988877542 36889999988
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
++-.. ....||+|+.+|||-.
T Consensus 156 ~~L~~-----------~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 156 TALTD-----------ITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHhh-----------CCCCCcEEEECCCCCC
Confidence 76321 2246999999999954
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.35 E-value=2.5e-06 Score=80.89 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEcccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~ 197 (397)
.+.+...+.+...+...+.++|||||+++|+.|.+++.. +++|+++|.|++.++.|++++... ++++++.||+.
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 345666666666666667789999999999999999974 569999999999999999999755 38999999998
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecC
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANI 225 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (397)
+.-. .+.......+.||.|+-+-
T Consensus 142 e~L~-----~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 142 PVLD-----QMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred HHHH-----HHHhccccCCcccEEEecC
Confidence 7521 1111000125799998764
No 177
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.33 E-value=7.1e-07 Score=79.60 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=54.6
Q ss_pred CCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccch
Q 015990 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~ 201 (397)
.+.+.|+|+|+|.++...++.+.+|+|||.|+...+.|++|+.-. .|++++.||+.++++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f 94 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF 94 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence 378999999999999999999889999999999999999997543 499999999999976
No 178
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.28 E-value=2.6e-06 Score=79.31 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcc--------------CCceEE
Q 015990 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKV 191 (397)
Q Consensus 126 ~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~--------------~~~v~i 191 (397)
+|.+.+. ++.+...++.+||..|||.|.-..+|+++|.+|+|+|+++.+++.+.+.... .+++++
T Consensus 23 ~p~L~~~-~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 23 NPALVEY-LDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp THHHHHH-HHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred CHHHHHH-HHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 4445444 4446677788999999999999999999999999999999999998433211 136899
Q ss_pred EEccccccch
Q 015990 192 LQEDFVKCHI 201 (397)
Q Consensus 192 i~gD~~~~~~ 201 (397)
++||+.+++.
T Consensus 102 ~~gDfF~l~~ 111 (218)
T PF05724_consen 102 YCGDFFELPP 111 (218)
T ss_dssp EES-TTTGGG
T ss_pred EEcccccCCh
Confidence 9999999864
No 179
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.25 E-value=3.1e-06 Score=82.58 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=60.9
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhc
Q 015990 138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 138 ~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
.+-+++.|||+|||+|.++...|+.|+ +|+|||.+.-+ +.|++.+..++ -+++++|.+.++.++
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP----------- 124 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP----------- 124 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC-----------
Confidence 355789999999999999999999976 89999987654 88888887664 589999999998543
Q ss_pred CCCCcceEeec
Q 015990 214 SSSGFAKVVAN 224 (397)
Q Consensus 214 ~~~~~d~Vv~N 224 (397)
.++.|+||+-
T Consensus 125 -~eKVDiIvSE 134 (346)
T KOG1499|consen 125 -VEKVDIIVSE 134 (346)
T ss_pred -ccceeEEeeh
Confidence 2577888865
No 180
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.21 E-value=4.6e-06 Score=83.76 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC----ceEEEEccccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVK 198 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~----~v~ii~gD~~~ 198 (397)
..|....++.+... ..|++||++.|=||.++...+..|+ +|++||+|...++.|++|++.++ .+.++++|+.+
T Consensus 202 FlDqR~~R~~l~~~--~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~ 279 (393)
T COG1092 202 FLDQRDNRRALGEL--AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK 279 (393)
T ss_pred eHHhHHHHHHHhhh--ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence 34444444444332 2389999999999999999999988 99999999999999999998764 58899999988
Q ss_pred cchhhhhhhHHhhhcCCCCcceEeecCCC
Q 015990 199 CHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
+--. .. ..+.+||+||.+||=
T Consensus 280 ~l~~-----~~---~~g~~fDlIilDPPs 300 (393)
T COG1092 280 WLRK-----AE---RRGEKFDLIILDPPS 300 (393)
T ss_pred HHHH-----HH---hcCCcccEEEECCcc
Confidence 7321 11 134589999999993
No 181
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.21 E-value=1.2e-05 Score=75.18 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc--------------cCCceE
Q 015990 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLK 190 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~--------------~~~~v~ 190 (397)
.++.+.+.+.. +...++.+||..|||.|.-..+|+++|.+|+|+|+++.+++.+.+... ...+++
T Consensus 28 pnp~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 28 PNEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 45666666544 444567899999999999999999999999999999999999765321 123899
Q ss_pred EEEccccccch
Q 015990 191 VLQEDFVKCHI 201 (397)
Q Consensus 191 ii~gD~~~~~~ 201 (397)
++++|+.+++.
T Consensus 107 ~~~gD~f~l~~ 117 (226)
T PRK13256 107 IYVADIFNLPK 117 (226)
T ss_pred EEEccCcCCCc
Confidence 99999999853
No 182
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.19 E-value=7.8e-06 Score=83.95 Aligned_cols=71 Identities=27% Similarity=0.509 Sum_probs=53.0
Q ss_pred CCEEEEEcCcccHHHHHHHHcC------CcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhhh
Q 015990 142 GDIVLEIGPGTGSLTNVLLNAG------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~------~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~~ 212 (397)
+..|+|||||+|.|....++.+ .+|+|||.++.++..+++..+.+ ++|+++++|+.++..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---------- 256 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---------- 256 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----------
Confidence 5689999999999988777654 48999999999888877654332 4899999999999753
Q ss_pred cCCCCcceEeecC
Q 015990 213 KSSSGFAKVVANI 225 (397)
Q Consensus 213 ~~~~~~d~Vv~Nl 225 (397)
.+.|+||+-+
T Consensus 257 ---ekvDIIVSEl 266 (448)
T PF05185_consen 257 ---EKVDIIVSEL 266 (448)
T ss_dssp ---S-EEEEEE--
T ss_pred ---CceeEEEEec
Confidence 5788888653
No 183
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.17 E-value=1.4e-05 Score=77.08 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=67.4
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHH---HHHhccCCceEEEEccccccchhhhhh
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLV---RERFASIDQLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a---~~~~~~~~~v~ii~gD~~~~~~~~~~~ 206 (397)
+++...+..-.|++|||||||.|+.+..|+.+|+ .|+|||.+....-.. ++.++....+..+-.-+++++.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----- 179 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----- 179 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-----
Confidence 4566666556789999999999999999999977 699999998876543 3333222233333223333321
Q ss_pred hHHhhhcCCCCcceEeec-CCCcCcHHH------HHHhccCCCceee
Q 015990 207 SLFERRKSSSGFAKVVAN-IPFNISTDV------IKQLLPMGDIFSE 246 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~N-lPy~i~s~i------l~~L~~~g~~~~~ 246 (397)
.+.||.|++- +=||-.+|+ ...|.++|.++-+
T Consensus 180 --------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 180 --------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred --------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 2578987654 667777664 3355667776543
No 184
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.16 E-value=9.2e-06 Score=76.10 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=39.0
Q ss_pred HHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHcC-CcEEEEeCCHHHHHH
Q 015990 131 DQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGL 178 (397)
Q Consensus 131 ~~i~~~~~~-~~~~~VLEIG~G~G~lt~~La~~~-~~V~~vE~d~~~i~~ 178 (397)
..+++...+ .++.+|||+|||+|.+|..+++.| .+|+|||+++.++..
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 445555554 367799999999999999999996 489999999987765
No 185
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=5.5e-06 Score=75.14 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=68.2
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhccC--CceE-EEEccccccchhhhhhhHHhh
Q 015990 136 AAAVQEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI--DQLK-VLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 136 ~~~~~~~~~VLEIG~G~G~lt~~La~-~~~~V~~vE~d~~~i~~a~~~~~~~--~~v~-ii~gD~~~~~~~~~~~~~~~~ 211 (397)
.+.......|||+|||||.--...-. .+.+|+++|.++.|-++|.+.+..+ .+++ ++++|..+++.-
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l--------- 141 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL--------- 141 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc---------
Confidence 33333334589999999988766653 4789999999999999999887654 3777 999999988621
Q ss_pred hcCCCCcceEeecCCC-------cCcHHHHHHhccCCCce
Q 015990 212 RKSSSGFAKVVANIPF-------NISTDVIKQLLPMGDIF 244 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy-------~i~s~il~~L~~~g~~~ 244 (397)
..+..|.||.-+-. ....++-+.|.++|.++
T Consensus 142 --~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 142 --ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRII 179 (252)
T ss_pred --ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEE
Confidence 23678888876543 11223344455666543
No 186
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.1e-05 Score=75.99 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhh
Q 015990 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 130 ~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~ 203 (397)
+..|+..+++.+|++|||-|+|+|.++..+++.. ++++.+|..+...+.|.+.++.. +|+++.+-|+....+..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 4678889999999999999999999999999974 69999999999999999998765 39999999998776531
Q ss_pred hhhhHHhhhcCCCCcceEeecCCC
Q 015990 204 HMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
....+|.|+.++|-
T Consensus 174 ----------ks~~aDaVFLDlPa 187 (314)
T KOG2915|consen 174 ----------KSLKADAVFLDLPA 187 (314)
T ss_pred ----------cccccceEEEcCCC
Confidence 23578999999985
No 187
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.07 E-value=1.2e-05 Score=74.16 Aligned_cols=94 Identities=17% Similarity=0.312 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhc-------c----CCceEE
Q 015990 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA-------S----IDQLKV 191 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~~vE~d~~~i~~a~~~~~-------~----~~~v~i 191 (397)
+.+.....|++.+++.+++..+|||||.|......+-. +. +.+|||+.+...+.|+.... . .+++++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 45677888999999999999999999999998766643 55 59999999999887765321 1 237899
Q ss_pred EEccccccchhhhhhhHHhhhcCCCCcceEeec-CCC
Q 015990 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF 227 (397)
Q Consensus 192 i~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy 227 (397)
.++|+++.+.... ++ ...|+|+.| .-|
T Consensus 106 ~~gdfl~~~~~~~---~~------s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 106 IHGDFLDPDFVKD---IW------SDADVVFVNNTCF 133 (205)
T ss_dssp ECS-TTTHHHHHH---HG------HC-SEEEE--TTT
T ss_pred eccCccccHhHhh---hh------cCCCEEEEecccc
Confidence 9999988764321 11 245777766 444
No 188
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.06 E-value=6.4e-06 Score=75.35 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCccCCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEcc
Q 015990 120 GQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQED 195 (397)
Q Consensus 120 GQnfl~~~~i~~~i~~~~~~~-~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD 195 (397)
|+-..+.+.+...|+...... ..+.|+|..||.|.-|...+..+..|++||+|+.-+..|+.|++-.| ++++++||
T Consensus 72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred ceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence 454456666666666654322 55789999999999999999999999999999999999999987654 89999999
Q ss_pred ccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHH
Q 015990 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233 (397)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~i 233 (397)
++++--...+ .....|.|+..+|+.-++-.
T Consensus 152 ~ld~~~~lq~--------~K~~~~~vf~sppwggp~y~ 181 (263)
T KOG2730|consen 152 FLDLASKLKA--------DKIKYDCVFLSPPWGGPSYL 181 (263)
T ss_pred HHHHHHHHhh--------hhheeeeeecCCCCCCcchh
Confidence 9886321110 12346678888887655433
No 189
>PLN02823 spermine synthase
Probab=98.02 E-value=2.6e-05 Score=77.19 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=61.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcc------CCceEEEEccccccchhhhhhhHHhhh
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~------~~~v~ii~gD~~~~~~~~~~~~~~~~~ 212 (397)
.+.+||.||+|.|.++..+++. ..+|++||+|+++++.|++.+.. .++++++.+|+.++-..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~---------- 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK---------- 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----------
Confidence 4578999999999999998885 35899999999999999998753 35899999999876311
Q ss_pred cCCCCcceEeecCC
Q 015990 213 KSSSGFAKVVANIP 226 (397)
Q Consensus 213 ~~~~~~d~Vv~NlP 226 (397)
..+.+|+|+.+++
T Consensus 173 -~~~~yDvIi~D~~ 185 (336)
T PLN02823 173 -RDEKFDVIIGDLA 185 (336)
T ss_pred -CCCCccEEEecCC
Confidence 2367999999864
No 190
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.01 E-value=4.2e-06 Score=77.06 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhh
Q 015990 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 127 ~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~ 206 (397)
|..++.++..++..+=+++||+|||||-.+..|.....+++|||+|+.|++.|.++-- -=++.++|+..+...
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl~~---- 183 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFLED---- 183 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc---hHHHHHHHHHHHhhh----
Confidence 5666777777877777899999999999999999999999999999999999988621 112445555433210
Q ss_pred hHHhhhcCCCCcceEeec--CCC
Q 015990 207 SLFERRKSSSGFAKVVAN--IPF 227 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~N--lPy 227 (397)
....++|+|++- +||
T Consensus 184 ------~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 184 ------LTQERFDLIVAADVLPY 200 (287)
T ss_pred ------ccCCcccchhhhhHHHh
Confidence 134678888764 455
No 191
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.98 E-value=3.6e-05 Score=74.59 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=54.3
Q ss_pred CccCCCH-----HHHHHHHHHhcCCC-----CCEEEEEcCcccHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhccCC-
Q 015990 121 QHYMLNS-----EINDQLAAAAAVQE-----GDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID- 187 (397)
Q Consensus 121 Qnfl~~~-----~i~~~i~~~~~~~~-----~~~VLEIG~G~G~lt~~La~--~~~~V~~vE~d~~~i~~a~~~~~~~~- 187 (397)
.++|.++ +.+.+|.+.+.... .-++||||||.-.+=-.|+. .+.+++|.|+|+..++.|++++..++
T Consensus 72 ~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~ 151 (299)
T PF05971_consen 72 EGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPN 151 (299)
T ss_dssp TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T
T ss_pred CCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc
Confidence 4456553 34455666554332 34799999998766444443 38899999999999999999998762
Q ss_pred ---ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHH
Q 015990 188 ---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232 (397)
Q Consensus 188 ---~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~ 232 (397)
+|+++...-...-+.. +.. ..+.+|..++||||+-+.+
T Consensus 152 L~~~I~l~~~~~~~~i~~~----i~~---~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 152 LESRIELRKQKNPDNIFDG----IIQ---PNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp -TTTEEEEE--ST-SSTTT----STT-----S-EEEEEE-----SS--
T ss_pred cccceEEEEcCCccccchh----hhc---ccceeeEEecCCccccChh
Confidence 7888765422211111 111 2357999999999988764
No 192
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.98 E-value=3.4e-05 Score=77.44 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=65.5
Q ss_pred CEEEEEcCcccHHHHHHHHc--C-CcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~-~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
-+|||+.||+|..++.++.. | .+|+++|+|+++++.+++|++.++ +++++++|+..+... ....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-----------~~~~ 114 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY-----------RNRK 114 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-----------hCCC
Confidence 48999999999999999987 3 489999999999999999997654 689999998776321 1256
Q ss_pred cceEeecCCCcCcHHHHH
Q 015990 218 FAKVVANIPFNISTDVIK 235 (397)
Q Consensus 218 ~d~Vv~NlPy~i~s~il~ 235 (397)
||+|..|| |...++.+.
T Consensus 115 fDvIdlDP-fGs~~~fld 131 (374)
T TIGR00308 115 FHVIDIDP-FGTPAPFVD 131 (374)
T ss_pred CCEEEeCC-CCCcHHHHH
Confidence 99999988 665555543
No 193
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.95 E-value=2.4e-05 Score=71.65 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=56.7
Q ss_pred CEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcc--CCceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~--~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
..+||||||.|.....+|.. ...++|||+....+..+..++.. .+|+.++++|+..+-. .++ .++..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~-----~~~----~~~~v 89 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR-----RLF----PPGSV 89 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH-----HHS----TTTSE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh-----hcc----cCCch
Confidence 38999999999999999986 66899999999999988877654 3599999999987521 111 23678
Q ss_pred ceEeecCCC
Q 015990 219 AKVVANIPF 227 (397)
Q Consensus 219 d~Vv~NlPy 227 (397)
+.|.-|.|-
T Consensus 90 ~~i~i~FPD 98 (195)
T PF02390_consen 90 DRIYINFPD 98 (195)
T ss_dssp EEEEEES--
T ss_pred heEEEeCCC
Confidence 888888773
No 194
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.91 E-value=1.5e-05 Score=77.32 Aligned_cols=117 Identities=26% Similarity=0.364 Sum_probs=91.6
Q ss_pred HHHHhcCCCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHH-------
Q 015990 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL------- 178 (397)
Q Consensus 106 ~~l~~~~~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~------- 178 (397)
+++.++..+.+...|- .-+|+.+.--+.+.+.+.+|+.|+|.-.|||.+....+.-|+.|+|-|||-.++..
T Consensus 174 ~li~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~s 252 (421)
T KOG2671|consen 174 ELIEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDES 252 (421)
T ss_pred hHhhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcc
Confidence 3455555666566665 67888888888888999999999999999999999999999999999999998873
Q ss_pred HHHHhccCC----ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHH
Q 015990 179 VRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234 (397)
Q Consensus 179 a~~~~~~~~----~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il 234 (397)
.+.|++..+ -+.++.+|+..-++. ....+|.||++|||.+-....
T Consensus 253 i~aNFkQYg~~~~fldvl~~D~sn~~~r-----------sn~~fDaIvcDPPYGVRe~~r 301 (421)
T KOG2671|consen 253 IKANFKQYGSSSQFLDVLTADFSNPPLR-----------SNLKFDAIVCDPPYGVREGAR 301 (421)
T ss_pred hhHhHHHhCCcchhhheeeecccCcchh-----------hcceeeEEEeCCCcchhhhhh
Confidence 345555443 356778888777653 235799999999999876554
No 195
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.90 E-value=3.2e-05 Score=80.46 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHhccC
Q 015990 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASI 186 (397)
Q Consensus 113 ~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~~vE~d~~~i~~a~~~~~~~ 186 (397)
....+..|| |.++..+.+.|++.+.+.+..+|+|.-||+|.+-....+. . ..++|.|+++.....++.++--+
T Consensus 159 ~~~~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh 237 (489)
T COG0286 159 EAEGKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH 237 (489)
T ss_pred HhcCCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh
Confidence 345566788 8999999999999999888889999999999886655542 1 56999999999999999987543
Q ss_pred C---ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCc
Q 015990 187 D---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 187 ~---~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
+ ++.+.++|.+.-+.... . .....+|.|++||||+
T Consensus 238 gi~~~~~i~~~dtl~~~~~~~-----~--~~~~~~D~viaNPPf~ 275 (489)
T COG0286 238 GIEGDANIRHGDTLSNPKHDD-----K--DDKGKFDFVIANPPFS 275 (489)
T ss_pred CCCccccccccccccCCcccc-----c--CCccceeEEEeCCCCC
Confidence 3 46788888777654311 0 0235699999999997
No 196
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.88 E-value=4.5e-05 Score=73.75 Aligned_cols=94 Identities=19% Similarity=0.289 Sum_probs=65.7
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC----ceEEEEcccc
Q 015990 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~----~v~ii~gD~~ 197 (397)
|..|..-.++.+... .++++||++.|=||.++...+..|+ +|++||.|..+++.+++|+..++ +++++.+|+.
T Consensus 107 lFlDqR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 107 LFLDQRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp S-GGGHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred EcHHHHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 344544444444433 3578999999999999999888776 79999999999999999987653 7899999998
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCCC
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
++--. +. ...+||+||.+||=
T Consensus 185 ~~l~~------~~---~~~~fD~IIlDPPs 205 (286)
T PF10672_consen 185 KFLKR------LK---KGGRFDLIILDPPS 205 (286)
T ss_dssp HHHHH------HH---HTT-EEEEEE--SS
T ss_pred HHHHH------Hh---cCCCCCEEEECCCC
Confidence 75211 11 23689999999993
No 197
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.87 E-value=7.8e-05 Score=66.91 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=50.1
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC-----ceEEEEccccccchhhhhhhHHh
Q 015990 138 AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHIRSHMLSLFE 210 (397)
Q Consensus 138 ~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~-----~v~ii~gD~~~~~~~~~~~~~~~ 210 (397)
...++.+|||+|||+|..+..++.. +.+|+..|.++ .++.++.|+..++ ++++..-|..+-.. .+..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~----~~~~- 115 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELD----SDLL- 115 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HH----HHHH-
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccc----cccc-
Confidence 3557889999999999999999998 67999999999 9999999987642 55555554433110 1111
Q ss_pred hhcCCCCcceEee-cCCCc
Q 015990 211 RRKSSSGFAKVVA-NIPFN 228 (397)
Q Consensus 211 ~~~~~~~~d~Vv~-NlPy~ 228 (397)
....+|+|++ +.-|+
T Consensus 116 ---~~~~~D~IlasDv~Y~ 131 (173)
T PF10294_consen 116 ---EPHSFDVILASDVLYD 131 (173)
T ss_dssp ---S-SSBSEEEEES--S-
T ss_pred ---ccccCCEEEEecccch
Confidence 2357888764 45554
No 198
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.83 E-value=7e-05 Score=77.34 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=73.2
Q ss_pred CCccCCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC--ceEEE
Q 015990 120 GQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVL 192 (397)
Q Consensus 120 GQnfl~~~~i~~~i~~~~--~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii 192 (397)
|.-|+.|+.- ...+..+ +++++++|||+++|.|.=|..+++. .+.|+++|+++..++.++++++..+ |+.+.
T Consensus 91 G~~yvQd~sS-~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~ 169 (470)
T PRK11933 91 GLFYIQEASS-MLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALT 169 (470)
T ss_pred CcEEEECHHH-HHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 4434444433 2334445 7789999999999999999999986 3589999999999999999998764 88999
Q ss_pred EccccccchhhhhhhHHhhhcCCCCcceEeecCC
Q 015990 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
+.|+..+... ....||.|+.+.|
T Consensus 170 ~~D~~~~~~~-----------~~~~fD~ILvDaP 192 (470)
T PRK11933 170 HFDGRVFGAA-----------LPETFDAILLDAP 192 (470)
T ss_pred eCchhhhhhh-----------chhhcCeEEEcCC
Confidence 9998765321 1256899999998
No 199
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.81 E-value=0.0001 Score=69.63 Aligned_cols=113 Identities=23% Similarity=0.342 Sum_probs=81.0
Q ss_pred cCCCccCCCHHHHHHHHHHhc-----CCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEE
Q 015990 118 SLGQHYMLNSEINDQLAAAAA-----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (397)
Q Consensus 118 ~~GQnfl~~~~i~~~i~~~~~-----~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii 192 (397)
..|.-|+....-.++++.... -....++||||+|.|..|..++..-.+|++.|.|+.|...++++ +++++
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g~~vl 140 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----GFTVL 140 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----CCeEE
Confidence 457788988888888887652 12456899999999999999999989999999999998888774 35555
Q ss_pred EccccccchhhhhhhHHhhhcCCCCcceEe-ecC------CCcCcHHHHHHhccCCCceeeeEE
Q 015990 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVV-ANI------PFNISTDVIKQLLPMGDIFSEVVL 249 (397)
Q Consensus 193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv-~Nl------Py~i~s~il~~L~~~g~~~~~~~l 249 (397)
..| ++.. .+.++|+|. .|+ |.....+|...|.+.|.++-..++
T Consensus 141 ~~~--~w~~------------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 141 DID--DWQQ------------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred ehh--hhhc------------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 333 2221 224677764 343 555566677777787776655554
No 200
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.80 E-value=0.00013 Score=71.04 Aligned_cols=98 Identities=11% Similarity=0.366 Sum_probs=80.3
Q ss_pred ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccc
Q 015990 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVK 198 (397)
Q Consensus 122 nfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~ 198 (397)
||..-|.+.+.+++.+.+.+++.++|.=+|.|.-|..+++. .++|+|+|.|+.+++.+++++... ++++++++++.+
T Consensus 1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 56777889999999999999999999999999999999986 379999999999999999988654 489999999988
Q ss_pred cchhhhhhhHHhhhcCCCCcceEeecCC
Q 015990 199 CHIRSHMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
+... +.+ .....+|.|+.|+-
T Consensus 81 l~~~------l~~-~~~~~vDgIl~DLG 101 (305)
T TIGR00006 81 FFEH------LDE-LLVTKIDGILVDLG 101 (305)
T ss_pred HHHH------HHh-cCCCcccEEEEecc
Confidence 6421 111 12245888888874
No 201
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.78 E-value=8.6e-05 Score=64.28 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=45.9
Q ss_pred CCCCCEEEEEcCcccHHHHHHHH-----c-CCcEEEEeCCHHHHHHHHHHhccC-----CceEEEEcccc
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLN-----A-GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFV 197 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~-----~-~~~V~~vE~d~~~i~~a~~~~~~~-----~~v~ii~gD~~ 197 (397)
..+...|+|+|||.|+++..|+. . +.+|++||.++.+++.+.++.... .++++..++..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence 35678999999999999999998 3 679999999999999888776432 24444454443
No 202
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.75 E-value=6.3e-05 Score=64.61 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=47.3
Q ss_pred EEEEEcCcccHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhccC--CceEEEEcccccc
Q 015990 144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC 199 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~--~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~ 199 (397)
+|||||||.|..+..+++.+. +|+++|.++.+++.+++++..+ +++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999998754 6999999999999999998754 3688887766543
No 203
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.69 E-value=0.00016 Score=71.05 Aligned_cols=85 Identities=20% Similarity=0.321 Sum_probs=62.6
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
+.++.++||+||++|..|..|+++|.+|+|||..+ |. ..+...++|+.+.+|...+... ...+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~p~------------~~~v 271 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFRPP------------RKNV 271 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCCCCEEEEeccCcccCCC------------CCCC
Confidence 35788999999999999999999999999999554 32 3344457999999998887431 2568
Q ss_pred ceEeecCC---CcCcHHHHHHhccCC
Q 015990 219 AKVVANIP---FNISTDVIKQLLPMG 241 (397)
Q Consensus 219 d~Vv~NlP---y~i~s~il~~L~~~g 241 (397)
|.+|+++- ..+. .++..++..|
T Consensus 272 DwvVcDmve~P~rva-~lm~~Wl~~g 296 (357)
T PRK11760 272 DWLVCDMVEKPARVA-ELMAQWLVNG 296 (357)
T ss_pred CEEEEecccCHHHHH-HHHHHHHhcC
Confidence 99999863 3333 3444555444
No 204
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.68 E-value=9.9e-05 Score=69.10 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=61.4
Q ss_pred CEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
..+||||||.|..+..+|+. ...++|||+....+..|.+.+... +|+.++++|+..+... + ...+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~------~---~~~~sl 120 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDY------L---IPDGSL 120 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHh------c---CCCCCe
Confidence 58999999999999999997 458999999999888887777554 3999999999887321 1 123478
Q ss_pred ceEeecCCCc
Q 015990 219 AKVVANIPFN 228 (397)
Q Consensus 219 d~Vv~NlPy~ 228 (397)
+.|.-|.|-=
T Consensus 121 ~~I~i~FPDP 130 (227)
T COG0220 121 DKIYINFPDP 130 (227)
T ss_pred eEEEEECCCC
Confidence 8999998743
No 205
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00023 Score=68.80 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=60.8
Q ss_pred CEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcc------CCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 143 DIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~------~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
++||-||-|.|..++.+++.. .+++.||+|+..++.+++.+.. .++++++.+|+.++--. .
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~-----------~ 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD-----------C 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh-----------C
Confidence 699999999999999999985 5999999999999999998753 25899999999887321 2
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
..++|+|+.|.
T Consensus 147 ~~~fDvIi~D~ 157 (282)
T COG0421 147 EEKFDVIIVDS 157 (282)
T ss_pred CCcCCEEEEcC
Confidence 34799999885
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.53 E-value=0.00041 Score=65.88 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhcc------CCceEEEEccccccchhhhhhhHHhh
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~------~~~v~ii~gD~~~~~~~~~~~~~~~~ 211 (397)
..+++||=||-|.|..+..+++.. .+|+.||+|+..++.|++.+.. .++++++.+|+..+--.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~--------- 145 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE--------- 145 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT---------
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh---------
Confidence 357899999999999999999874 6899999999999999987642 35899999999876321
Q ss_pred hcCCC-CcceEeecCCC
Q 015990 212 RKSSS-GFAKVVANIPF 227 (397)
Q Consensus 212 ~~~~~-~~d~Vv~NlPy 227 (397)
... ++|+|+.+++-
T Consensus 146 --~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 146 --TQEEKYDVIIVDLTD 160 (246)
T ss_dssp --SSST-EEEEEEESSS
T ss_pred --ccCCcccEEEEeCCC
Confidence 234 79999988764
No 207
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.50 E-value=0.00046 Score=64.28 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=56.8
Q ss_pred CCccCCCHHHHHHHHHHh-cCCCCC--EEEEEcCcccHHHHHHHHcC----CcEEEEeCCHHHHHHHHHHhccCC-ceEE
Q 015990 120 GQHYMLNSEINDQLAAAA-AVQEGD--IVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASID-QLKV 191 (397)
Q Consensus 120 GQnfl~~~~i~~~i~~~~-~~~~~~--~VLEIG~G~G~lt~~La~~~----~~V~~vE~d~~~i~~a~~~~~~~~-~v~i 191 (397)
..+|..|++.+.+=...+ ...... +|||||||.|.....+++-. -+|++.|.++++++..+++-...+ ++..
T Consensus 47 ~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~a 126 (264)
T KOG2361|consen 47 ENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEA 126 (264)
T ss_pred cccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcc
Confidence 445777777665444333 333333 79999999999999999852 479999999999999999865443 5555
Q ss_pred EEcccccc
Q 015990 192 LQEDFVKC 199 (397)
Q Consensus 192 i~gD~~~~ 199 (397)
...|+..-
T Consensus 127 fv~Dlt~~ 134 (264)
T KOG2361|consen 127 FVWDLTSP 134 (264)
T ss_pred cceeccch
Confidence 55555443
No 208
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00021 Score=66.58 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCCC-EEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 015990 128 EINDQLAAAAAVQEGD-IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~-~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~ 184 (397)
..+..+... .++. .++|+|||+|.-++.++..-.+|+|+|+++.|++.|++...
T Consensus 22 dw~~~ia~~---~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~ 76 (261)
T KOG3010|consen 22 DWFKKIASR---TEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPP 76 (261)
T ss_pred HHHHHHHhh---CCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCC
Confidence 444444433 3333 89999999997778888888899999999999999988653
No 209
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00018 Score=67.02 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=41.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhcc
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS 185 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~-~~-~V~~vE~d~~~i~~a~~~~~~ 185 (397)
..+..+|||||-.|.+|..+++. +. .|+|+|||+.+++.|++++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 46778999999999999999997 44 799999999999999998764
No 210
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.40 E-value=0.00072 Score=66.89 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=65.7
Q ss_pred CCCEEEEEcCcccHH-HHHHHHcCCcEEEEeCCHHHHHHHHHHhcc--------CC----ceEEEEccccccchhhhhhh
Q 015990 141 EGDIVLEIGPGTGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFAS--------ID----QLKVLQEDFVKCHIRSHMLS 207 (397)
Q Consensus 141 ~~~~VLEIG~G~G~l-t~~La~~~~~V~~vE~d~~~i~~a~~~~~~--------~~----~v~ii~gD~~~~~~~~~~~~ 207 (397)
++.+|||+|||-|.- ..+......+++|+|++...++.|++++.. .. ...++.+|.....+.+.+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999998774 555554567999999999999999999821 11 46778888876544322210
Q ss_pred HHhhhcCCCCcceEeecCC--CcCcHH---------HHHHhccCCCceeeeEEeeeHHHHHHHc
Q 015990 208 LFERRKSSSGFAKVVANIP--FNISTD---------VIKQLLPMGDIFSEVVLLLQEETALRLV 260 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlP--y~i~s~---------il~~L~~~g~~~~~~~lm~Qkeva~rl~ 260 (397)
....||+|-+-.. |...++ +-..|.++|.++- +.+--.++..+|.
T Consensus 142 ------~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg--T~~d~~~i~~~l~ 197 (331)
T PF03291_consen 142 ------RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG--TTPDSDEIVKRLR 197 (331)
T ss_dssp ------TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE--EEE-HHHHHCCHH
T ss_pred ------cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE--EecCHHHHHHHHH
Confidence 1247888766543 444332 3345667776552 2222234445554
No 211
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.38 E-value=0.00024 Score=63.88 Aligned_cols=75 Identities=23% Similarity=0.419 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
++.+|||+||++|..|..+++++ .+|+|||+.+. ....++..+.+|+.+....+.+.+.+.. ....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~~--~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLPE--SGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHGT--TTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhccc--cccC
Confidence 34899999999999999999987 69999999876 2224788889998766433323222221 1257
Q ss_pred cceEeecCC
Q 015990 218 FAKVVANIP 226 (397)
Q Consensus 218 ~d~Vv~NlP 226 (397)
+|+|+++.-
T Consensus 92 ~dlv~~D~~ 100 (181)
T PF01728_consen 92 FDLVLSDMA 100 (181)
T ss_dssp ESEEEE---
T ss_pred cceeccccc
Confidence 999999983
No 212
>PRK00536 speE spermidine synthase; Provisional
Probab=97.37 E-value=0.0014 Score=62.69 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcc------CCceEEEEcccc
Q 015990 127 SEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFV 197 (397)
Q Consensus 127 ~~i~~~i~~~~~---~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~------~~~v~ii~gD~~ 197 (397)
+-++..++.... ....++||=||-|-|...+.+++...+|+-||+|+++++.+++.+.. +++++++.. +.
T Consensus 55 EfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~ 133 (262)
T PRK00536 55 LHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL 133 (262)
T ss_pred hhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh
Confidence 445555555433 34568999999999999999999877999999999999999995532 357887751 11
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCCCcC--cHHHHHHhccCCCcee
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMGDIFS 245 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i--~s~il~~L~~~g~~~~ 245 (397)
+ ...+.+|+||.+..|.- -..+.+.|.++|.++.
T Consensus 134 ~--------------~~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 134 D--------------LDIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred h--------------ccCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEE
Confidence 1 02257999999954431 2345566777775543
No 213
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0013 Score=65.78 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC----CcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchh
Q 015990 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (397)
Q Consensus 129 i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~----~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~ 202 (397)
........+++++|++|||..++.|.=|..+++.. ..|+|+|+|+.-++.++++++..+ |+.+++.|+......
T Consensus 144 sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 144 ASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223 (355)
T ss_pred HHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence 33344557789999999999999999999999863 457999999999999999998765 788999998765421
Q ss_pred hhhhhHHhhhcCCCCcceEeecCCC
Q 015990 203 SHMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 203 ~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
. .....||.|+.+.|=
T Consensus 224 ~---------~~~~~fD~iLlDaPC 239 (355)
T COG0144 224 L---------PGGEKFDRILLDAPC 239 (355)
T ss_pred c---------cccCcCcEEEECCCC
Confidence 0 012359999999983
No 214
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.13 E-value=0.0038 Score=58.52 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=61.2
Q ss_pred CccccCCCccCCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHH-HHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC-ce
Q 015990 114 FPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFASID-QL 189 (397)
Q Consensus 114 ~~~k~~GQnfl~~~~i~~~i~~~~~~--~~~~~VLEIG~G~G~l-t~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~-~v 189 (397)
.|...+-|.|.+.+..+.++.-.+.- -.|++||=+|=.--.. +..+....++|+.+|+|+++++..++..+..+ ++
T Consensus 15 ~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i 94 (243)
T PF01861_consen 15 EPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPI 94 (243)
T ss_dssp ---GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--E
T ss_pred CCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCce
Confidence 66788999999999888877666543 3678999999654432 33333457799999999999999988776554 79
Q ss_pred EEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 190 ~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
+.++.|+.+.-+++ ..+.||+++.||||.+
T Consensus 95 ~~~~~DlR~~LP~~----------~~~~fD~f~TDPPyT~ 124 (243)
T PF01861_consen 95 EAVHYDLRDPLPEE----------LRGKFDVFFTDPPYTP 124 (243)
T ss_dssp EEE---TTS---TT----------TSS-BSEEEE---SSH
T ss_pred EEEEecccccCCHH----------HhcCCCEEEeCCCCCH
Confidence 99999987753322 2378999999999976
No 215
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.12 E-value=0.0031 Score=58.51 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=73.4
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccc
Q 015990 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF 196 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~ 196 (397)
..+.+.....+...+.+-.++++||||.=||+.+...|.. +++|+++|+|++.++.+.+..+.. .++++++|++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 4566777777777777777899999999999988877764 789999999999999997766543 3899999999
Q ss_pred cccchhhhhhhHHhhhcCCCCcceEeec
Q 015990 197 VKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (397)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~N 224 (397)
.+.- .++++. ...+.||.++.+
T Consensus 135 ~esL-----d~l~~~-~~~~tfDfaFvD 156 (237)
T KOG1663|consen 135 LESL-----DELLAD-GESGTFDFAFVD 156 (237)
T ss_pred hhhH-----HHHHhc-CCCCceeEEEEc
Confidence 8762 222322 134679988866
No 216
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.09 E-value=0.00097 Score=61.69 Aligned_cols=92 Identities=13% Similarity=0.220 Sum_probs=69.4
Q ss_pred CCEEEEEcCcccHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~-~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
-..++|||||.|++...|...+ .+++-+|.+-.|++.++..-. .+ .+....+|-+.+++. .+.+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~Ldf~------------ens~D 139 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEFLDFK------------ENSVD 139 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-CceEEEEEecchhccccc------------ccchh
Confidence 4579999999999999999886 489999999999998876532 12 456677887777653 36899
Q ss_pred eEeecCCCcCcHH-------HHHHhccCCCceee
Q 015990 220 KVVANIPFNISTD-------VIKQLLPMGDIFSE 246 (397)
Q Consensus 220 ~Vv~NlPy~i~s~-------il~~L~~~g~~~~~ 246 (397)
+|++.+-.+|+.+ +...++|.|.++..
T Consensus 140 LiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 140 LIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 9999988877653 33456677766543
No 217
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.09 E-value=0.0014 Score=59.31 Aligned_cols=88 Identities=19% Similarity=0.327 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM 205 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~ 205 (397)
.+.+.+...-+.-.+++|||+|+|+|.-++..+..|+ .|++.|+++-.++..+-|.+.++ ++.+.+.|..- +
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----- 139 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----- 139 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C-----
Confidence 4556666666666899999999999999999988876 79999999999999888888777 88888888766 2
Q ss_pred hhHHhhhcCCCCcceE-eecCCCcCc
Q 015990 206 LSLFERRKSSSGFAKV-VANIPFNIS 230 (397)
Q Consensus 206 ~~~~~~~~~~~~~d~V-v~NlPy~i~ 230 (397)
+..+|++ .+++-|+-+
T Consensus 140 ---------~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 140 ---------PPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ---------CcceeEEEeeceecCch
Confidence 1456665 566777654
No 218
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.06 E-value=0.0015 Score=68.48 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=59.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
.+..+||||||.|.++..+|.. ...++|||+....+..+....... .|+.++.+|+..+.. .+ ..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------~~----~~~ 416 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------DL----PNN 416 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------hc----Ccc
Confidence 4568999999999999999986 468999999999888776665433 489998888654321 11 235
Q ss_pred CcceEeecCCCcC
Q 015990 217 GFAKVVANIPFNI 229 (397)
Q Consensus 217 ~~d~Vv~NlPy~i 229 (397)
..|.|.-|.|-=|
T Consensus 417 sv~~i~i~FPDPW 429 (506)
T PRK01544 417 SLDGIYILFPDPW 429 (506)
T ss_pred cccEEEEECCCCC
Confidence 6889999987533
No 219
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.05 E-value=0.0019 Score=62.59 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=70.1
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhh
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~ 206 (397)
..+..+.+.+++.|||+.+|.|.=|..+++. .+.|++.|+++..+..+++++...+ ++.++..|+.......
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~--- 152 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK--- 152 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH---
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc---
Confidence 4455678899999999999999999999986 3589999999999999999987765 8888888888774321
Q ss_pred hHHhhhcCCCCcceEeecCCC
Q 015990 207 SLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy 227 (397)
....||.|+.+.|=
T Consensus 153 -------~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 153 -------PESKFDRVLVDAPC 166 (283)
T ss_dssp -------HTTTEEEEEEECSC
T ss_pred -------cccccchhhcCCCc
Confidence 12358999999984
No 220
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.98 E-value=0.0027 Score=61.97 Aligned_cols=97 Identities=12% Similarity=0.259 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccc
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCH 200 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~ 200 (397)
..-|.+++.+++.+.++++...+|.=-|.|.-|..+++. +++|+|+|.|+.+++.+++++... +++.++++++.++.
T Consensus 3 ~H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 3 YHIPVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLD 82 (310)
T ss_dssp S---TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHH
T ss_pred ceecccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHH
Confidence 445677889999999999999999999999999999986 579999999999999999998754 58999999998874
Q ss_pred hhhhhhhHHhhhcCCCCcceEeecCC
Q 015990 201 IRSHMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
.. +........+|-|+.++-
T Consensus 83 ~~------l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 83 EY------LKELNGINKVDGILFDLG 102 (310)
T ss_dssp HH------HHHTTTTS-EEEEEEE-S
T ss_pred HH------HHHccCCCccCEEEEccc
Confidence 21 111102356888888875
No 221
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.98 E-value=0.0049 Score=57.92 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=61.0
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhH
Q 015990 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208 (397)
Q Consensus 131 ~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~ 208 (397)
..+....+..+..+|+|||+|.|.++..++++ +.+++.+|+ |..++.+++ .++++++.||+.+ ++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~-~~------- 156 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFD-PL------- 156 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTT-CC-------
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHh-hh-------
Confidence 44556667777789999999999999999986 568999998 888888888 4699999999983 22
Q ss_pred HhhhcCCCCcceE-eecCCCcCcHHHHHHh
Q 015990 209 FERRKSSSGFAKV-VANIPFNISTDVIKQL 237 (397)
Q Consensus 209 ~~~~~~~~~~d~V-v~NlPy~i~s~il~~L 237 (397)
+. .|++ +.++=.+++.+-...+
T Consensus 157 ------P~-~D~~~l~~vLh~~~d~~~~~i 179 (241)
T PF00891_consen 157 ------PV-ADVYLLRHVLHDWSDEDCVKI 179 (241)
T ss_dssp ------SS-ESEEEEESSGGGS-HHHHHHH
T ss_pred ------cc-ccceeeehhhhhcchHHHHHH
Confidence 23 6654 5555555555443333
No 222
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.96 E-value=0.0021 Score=61.98 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=57.4
Q ss_pred EEEEEcCcccHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEe
Q 015990 144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~~-V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv 222 (397)
+|+|+.||.|.++..+.+.|.+ |.++|+|+.+++..+.|+.. . ++++|+.++...+. ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---~-~~~~Di~~~~~~~~----------~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---K-LIEGDITKIDEKDF----------IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---C-CccCccccCchhhc----------CCCCCEEE
Confidence 5899999999999999888774 77999999999999998743 2 67889888764310 24689999
Q ss_pred ecCCCc
Q 015990 223 ANIPFN 228 (397)
Q Consensus 223 ~NlPy~ 228 (397)
+.+|-+
T Consensus 68 ~gpPCq 73 (275)
T cd00315 68 GGFPCQ 73 (275)
T ss_pred eCCCCh
Confidence 999964
No 223
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0026 Score=58.30 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~---~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
+.++..|+|+|+.+|.-+..++++.. .|+|||+++- ...+++.++++|+.+-+..+.+...+ ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~~l~~~l----~~ 109 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLEKLLEAL----GG 109 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHHHHHHHc----CC
Confidence 45789999999999999999998733 4999999872 23357999999999876543333222 22
Q ss_pred CCcceEeecCCCcC
Q 015990 216 SGFAKVVANIPFNI 229 (397)
Q Consensus 216 ~~~d~Vv~NlPy~i 229 (397)
...|+|++++.-++
T Consensus 110 ~~~DvV~sD~ap~~ 123 (205)
T COG0293 110 APVDVVLSDMAPNT 123 (205)
T ss_pred CCcceEEecCCCCc
Confidence 34699999875543
No 224
>PRK11524 putative methyltransferase; Provisional
Probab=96.90 E-value=0.0031 Score=61.11 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 015990 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (397)
Q Consensus 126 ~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~ 184 (397)
+..++++++.... .+|+.|||..+|+|+.+....+.+.+.+|+|+|++.++.|++++.
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 4678888888765 689999999999999999988899999999999999999999975
No 225
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.87 E-value=0.0023 Score=62.04 Aligned_cols=114 Identities=22% Similarity=0.310 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhccC----C----ceEEEEccccccchhhhhhhHH
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI----D----QLKVLQEDFVKCHIRSHMLSLF 209 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~~vE~d~~~i~~a~~~~~~~----~----~v~ii~gD~~~~~~~~~~~~~~ 209 (397)
.++++.++|+|||.|.-.+.--+.| .+++|+||.+..++.|++++... . .+.++.+|.....+.+.+
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~---- 190 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL---- 190 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc----
Confidence 4678899999999988776655554 48999999999999999987642 1 478999998877654432
Q ss_pred hhhcCCCCcceEeecCC--CcCcHH---------HHHHhccCCCceeeeEEeeeHHHHHHHc
Q 015990 210 ERRKSSSGFAKVVANIP--FNISTD---------VIKQLLPMGDIFSEVVLLLQEETALRLV 260 (397)
Q Consensus 210 ~~~~~~~~~d~Vv~NlP--y~i~s~---------il~~L~~~g~~~~~~~lm~Qkeva~rl~ 260 (397)
. ...++||+|-+-.. |.+.+. +...|.++|.++-.+. --.....||-
T Consensus 191 e--~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP--dsd~Ii~rlr 248 (389)
T KOG1975|consen 191 E--FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP--DSDVIIKRLR 248 (389)
T ss_pred c--CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC--cHHHHHHHHH
Confidence 1 12234888766544 444442 3446677776553221 2234456665
No 226
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.85 E-value=0.0031 Score=57.89 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHH
Q 015990 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 124 l~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~ 181 (397)
..+..++++++.... .+|+.|||.-||+|+.+....+.+.+.+|+|++++.++.|++
T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 456788999998764 678999999999999999999999999999999999999874
No 227
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.84 E-value=0.0027 Score=58.84 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=50.2
Q ss_pred CCEEEEEcCcccHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccch
Q 015990 142 GDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~--~~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~ 201 (397)
+++++|||+|.|.=+..|+= ...+|+-+|...+-+..+++..... +|++++++.++++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~ 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc
Confidence 68999999999999988773 3567999999999888888776554 489999999999853
No 228
>PHA01634 hypothetical protein
Probab=96.76 E-value=0.0027 Score=53.54 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI 186 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~ 186 (397)
.+++|+|||.+.|..++.++-+|+ +|+++|.++.+.+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 578999999999999999999976 7999999999999999987643
No 229
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0062 Score=56.86 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=56.6
Q ss_pred HHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCCceEEEE-ccccccchhhhhhh
Q 015990 131 DQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQ-EDFVKCHIRSHMLS 207 (397)
Q Consensus 131 ~~i~~~~~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~~v~ii~-gD~~~~~~~~~~~~ 207 (397)
.++++..++. ++..+||||+-||.+|..++++|+ +|+|||.....+.. .+...+++..++ .|+..+...+
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~rV~~~E~tN~r~l~~~~---- 140 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDPRVIVLERTNVRYLTPED---- 140 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCCcEEEEecCChhhCCHHH----
Confidence 3455555554 678999999999999999999965 89999976533322 223335665554 4454444322
Q ss_pred HHhhhcCCCCcceEeecCCCc
Q 015990 208 LFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
-.+.+|.+++++-|-
T Consensus 141 ------~~~~~d~~v~DvSFI 155 (245)
T COG1189 141 ------FTEKPDLIVIDVSFI 155 (245)
T ss_pred ------cccCCCeEEEEeehh
Confidence 124678999998874
No 230
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.72 E-value=0.0065 Score=55.12 Aligned_cols=68 Identities=24% Similarity=0.270 Sum_probs=52.4
Q ss_pred EEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 144 IVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
+++|||+|.|.=+..|+=. ..+++.+|.+.+-+..++...... .|++++++++++.. ....+|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-------------~~~~fd 117 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE-------------YRESFD 117 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT-------------TTT-EE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc-------------cCCCcc
Confidence 8999999999998888754 568999999999888877765543 48999999998821 236788
Q ss_pred eEeec
Q 015990 220 KVVAN 224 (397)
Q Consensus 220 ~Vv~N 224 (397)
.|++=
T Consensus 118 ~v~aR 122 (184)
T PF02527_consen 118 VVTAR 122 (184)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88764
No 231
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.65 E-value=0.013 Score=56.49 Aligned_cols=78 Identities=13% Similarity=0.323 Sum_probs=68.6
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccc
Q 015990 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVK 198 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~ 198 (397)
|..-+.+++..++.+.+.++...+|.=-|-|.-+..+++.. ++++|+|.|+.+++.|++.+... ++++++++.+.+
T Consensus 5 ~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 5 FRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred CCccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 44557888999999999999999999999999999999873 57999999999999999998774 599999999877
Q ss_pred cc
Q 015990 199 CH 200 (397)
Q Consensus 199 ~~ 200 (397)
+.
T Consensus 85 l~ 86 (314)
T COG0275 85 LA 86 (314)
T ss_pred HH
Confidence 64
No 232
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.63 E-value=0.013 Score=54.19 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=57.5
Q ss_pred EEEEcCcccHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhcCCC-Cc
Q 015990 145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS-GF 218 (397)
Q Consensus 145 VLEIG~G~G~lt~~La~~~~--~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~~~~-~~ 218 (397)
|.||||-=|++...|.+.+. +++++|+++.-++.|++++...+ ++++..+|.++.-.. .+ ..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------------~e~~d 68 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------------GEDVD 68 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------------GG---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------------CCCCC
Confidence 68999999999999999876 89999999999999999987654 799999998774211 12 23
Q ss_pred ceEeecCCCcCcHHHHHH
Q 015990 219 AKVVANIPFNISTDVIKQ 236 (397)
Q Consensus 219 d~Vv~NlPy~i~s~il~~ 236 (397)
.+|++.+--....+|+..
T Consensus 69 ~ivIAGMGG~lI~~ILe~ 86 (205)
T PF04816_consen 69 TIVIAGMGGELIIEILEA 86 (205)
T ss_dssp EEEEEEE-HHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHh
Confidence 456776654444445544
No 233
>PRK13699 putative methylase; Provisional
Probab=96.56 E-value=0.0087 Score=56.12 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcc
Q 015990 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~ 185 (397)
.+..+.+.+++... .+|+.|||.-||+|+......+.+.+.+|+|++++..+.+.+++..
T Consensus 148 kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 148 KPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 45678888887654 5789999999999999998888899999999999999999988753
No 234
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.55 E-value=0.0041 Score=58.30 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=55.3
Q ss_pred HHHHHhcCCCCC--EEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc---cC--------CceEEEEccccc
Q 015990 132 QLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA---SI--------DQLKVLQEDFVK 198 (397)
Q Consensus 132 ~i~~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~---~~--------~~v~ii~gD~~~ 198 (397)
.++++++++++. +|||.=+|.|.-+..++..|++|+++|.++-+...++.-+. .. .+++++++|..+
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 577778777664 89999999999999999899999999999988776654321 11 279999999988
Q ss_pred cchhhhhhhHHhhhcCCCCcceEeecCCCc
Q 015990 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
+-.. ....+|+|.-+|-|-
T Consensus 144 ~L~~-----------~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 144 YLRQ-----------PDNSFDVVYFDPMFP 162 (234)
T ss_dssp HCCC-----------HSS--SEEEE--S--
T ss_pred HHhh-----------cCCCCCEEEECCCCC
Confidence 6321 236799999998774
No 235
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.31 E-value=0.0096 Score=57.98 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=54.3
Q ss_pred EEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEe
Q 015990 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv 222 (397)
+++|+.||.|.++..+.+.|. .|.++|+|+.+++..+.|+. ....+|+.+++..+. .. ..|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l---------~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDL---------PK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHH---------HH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccc---------cc-cceEEE
Confidence 689999999999999999886 57899999999999999984 788999999875421 11 589999
Q ss_pred ecCC
Q 015990 223 ANIP 226 (397)
Q Consensus 223 ~NlP 226 (397)
+.+|
T Consensus 67 ggpP 70 (335)
T PF00145_consen 67 GGPP 70 (335)
T ss_dssp EE--
T ss_pred eccC
Confidence 9988
No 236
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.28 E-value=0.011 Score=58.33 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHh--c-------cCCceEEEEccccccchhhhhhhH
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLSL 208 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~--~-------~~~~v~ii~gD~~~~~~~~~~~~~ 208 (397)
+...+||-+|-|.|--.+.+.+.. .+|+-||+||+|++.++.+. . .+++++++..|+.++--.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~------ 361 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT------ 361 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh------
Confidence 456789999999999999999863 59999999999999998432 1 125899999999876321
Q ss_pred HhhhcCCCCcceEeecCCC
Q 015990 209 FERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 209 ~~~~~~~~~~d~Vv~NlPy 227 (397)
..+.+|.||.++|-
T Consensus 362 -----a~~~fD~vIVDl~D 375 (508)
T COG4262 362 -----AADMFDVVIVDLPD 375 (508)
T ss_pred -----hcccccEEEEeCCC
Confidence 34689999999874
No 237
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.24 E-value=0.012 Score=54.46 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=48.4
Q ss_pred CCCEEEEEcCcccHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhcc-CC-ceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFAS-ID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~-~~~~V~~vE~d~~~i~~a~~~~~~-~~-~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
...++||.|+|+|..|..++- ...+|..||..+.+++.|++.+.. .+ -.++++....++.+. ..+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~------------~~~ 122 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE------------EGK 122 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------------TT-
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC------------CCc
Confidence 456899999999999987654 467999999999999999988765 22 356677766666432 257
Q ss_pred cceEeec
Q 015990 218 FAKVVAN 224 (397)
Q Consensus 218 ~d~Vv~N 224 (397)
+|+|...
T Consensus 123 YDlIW~Q 129 (218)
T PF05891_consen 123 YDLIWIQ 129 (218)
T ss_dssp EEEEEEE
T ss_pred EeEEEeh
Confidence 8888654
No 238
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.21 E-value=0.015 Score=53.96 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcC------CCCCEEEEEcCcccHHHHHHHH--cCCcEEEEeCCHHHHHHHHHHhccCC----ceEEEEc
Q 015990 127 SEINDQLAAAAAV------QEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID----QLKVLQE 194 (397)
Q Consensus 127 ~~i~~~i~~~~~~------~~~~~VLEIG~G~G~lt~~La~--~~~~V~~vE~d~~~i~~a~~~~~~~~----~v~ii~g 194 (397)
...+..+.+++.. .++-++||||.|---+=-.+.. .|.+.+|-|+|+..++.|+.++..++ .+++...
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q 137 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ 137 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence 3455566666532 2445789999886554433433 37899999999999999999987764 3444432
Q ss_pred cccccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHHH
Q 015990 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235 (397)
Q Consensus 195 D~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~ 235 (397)
.=.+.-+.+ .. ...+.+|.+.+|+|||-+.+-..
T Consensus 138 k~~~~if~g----ii---g~nE~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 138 KDSDAIFNG----II---GKNERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred cCccccccc----cc---cccceeeeEecCCCcchhHHHHH
Confidence 211111111 11 12468999999999998765443
No 239
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.16 E-value=0.0082 Score=53.02 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=37.9
Q ss_pred EEEeCCHHHHHHHHHHhcc-----CCceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCC
Q 015990 167 LAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 167 ~~vE~d~~~i~~a~~~~~~-----~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
+|+|++++|++.|+++... ..+++++++|+.++++. .+.+|.|+++.-.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~------------~~~fD~v~~~~~l 54 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD------------DCEFDAVTMGYGL 54 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC------------CCCeeEEEecchh
Confidence 4899999999999876542 13799999999998753 3578999877543
No 240
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.96 E-value=0.016 Score=54.69 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccc
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH 200 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~ 200 (397)
...++|+|||||.=-++...... +..++|+|||..+++.+...+...+ +.++...|.+.-.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP 167 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence 34789999999999999876654 4689999999999999998876543 7778888887653
No 241
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.94 E-value=0.037 Score=54.50 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=50.6
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHc------CCcEEEEeCCHHHHHHHHHHhc--cCCceEE--EEcccccc
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA--SIDQLKV--LQEDFVKC 199 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~~vE~d~~~i~~a~~~~~--~~~~v~i--i~gD~~~~ 199 (397)
.|+..+ .++..++|+|||.|.=|..|++. ..+.++||+|.++++.+.+++. ..+++++ ++||+.+.
T Consensus 69 ~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 69 DIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 444443 35668999999999998877763 2469999999999999999887 3455655 88988664
No 242
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.79 E-value=0.016 Score=56.99 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=54.3
Q ss_pred EEEEcCcccHHHHHHHHcCCcE-EEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEee
Q 015990 145 VLEIGPGTGSLTNVLLNAGATV-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (397)
Q Consensus 145 VLEIG~G~G~lt~~La~~~~~V-~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~ 223 (397)
|+|+.||.|.++.-+.+.|.++ .++|+|+.+++..+.|+. + .++++|+.++...+ ....|++++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~-~~~~~Di~~~~~~~-----------~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N-KVPFGDITKISPSD-----------IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C-CCCccChhhhhhhh-----------CCCcCEEEe
Confidence 6899999999999998888764 589999999999999874 3 56678988876432 135789999
Q ss_pred cCC
Q 015990 224 NIP 226 (397)
Q Consensus 224 NlP 226 (397)
.+|
T Consensus 66 g~P 68 (315)
T TIGR00675 66 GFP 68 (315)
T ss_pred cCC
Confidence 988
No 243
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.77 E-value=0.055 Score=50.27 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=61.0
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhc
Q 015990 137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 137 ~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
+.+.+|.+||-+|.++|+.-..+++- .+.|+|||.+++..+.+-.-.+..+|+--+.+|+.....-. .
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~---------~ 139 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR---------M 139 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT---------T
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh---------c
Confidence 45778999999999999999999985 45899999999877766655555579999999998653211 1
Q ss_pred CCCCcceEeecCCCcCcHHHH
Q 015990 214 SSSGFAKVVANIPFNISTDVI 234 (397)
Q Consensus 214 ~~~~~d~Vv~NlPy~i~s~il 234 (397)
..+..|+|+++..---...|+
T Consensus 140 lv~~VDvI~~DVaQp~Qa~I~ 160 (229)
T PF01269_consen 140 LVEMVDVIFQDVAQPDQARIA 160 (229)
T ss_dssp TS--EEEEEEE-SSTTHHHHH
T ss_pred ccccccEEEecCCChHHHHHH
Confidence 235789999998754444443
No 244
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.65 E-value=0.018 Score=58.06 Aligned_cols=51 Identities=37% Similarity=0.537 Sum_probs=44.2
Q ss_pred EEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCC---ceEEEEc
Q 015990 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQE 194 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~g 194 (397)
.|||||+|||.++...+..|+ .|+|+|.-..|++.|++....+| +++++..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 699999999999998888765 89999999999999999887664 7777753
No 245
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=0.025 Score=50.99 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=53.3
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCCceEEEEc-cccccchhhhhhhHHhhhcC
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~g-D~~~~~~~~~~~~~~~~~~~ 214 (397)
+.++++|||+||.+|.-+....++ .+.|.|||+-. +.....++++.+ |+.+...... +++. ..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~k---i~e~-lp 133 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRK---IFEA-LP 133 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHH---HHHh-CC
Confidence 457999999999999999988886 35799999742 333346778887 7776543222 2222 13
Q ss_pred CCCcceEeecCCCc
Q 015990 215 SSGFAKVVANIPFN 228 (397)
Q Consensus 215 ~~~~d~Vv~NlPy~ 228 (397)
.-..|+|++++.-+
T Consensus 134 ~r~VdvVlSDMapn 147 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPN 147 (232)
T ss_pred CCcccEEEeccCCC
Confidence 35688999987544
No 246
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.49 E-value=0.069 Score=43.71 Aligned_cols=53 Identities=32% Similarity=0.506 Sum_probs=39.1
Q ss_pred EEEEcCcccHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHhccCCc--eEEEEccccc
Q 015990 145 VLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK 198 (397)
Q Consensus 145 VLEIG~G~G~lt~~La~~~---~~V~~vE~d~~~i~~a~~~~~~~~~--v~ii~gD~~~ 198 (397)
++|+|||+|..+ .+.... ..++++|.++.++..++........ +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999977 444432 4899999999999986655432111 6788888776
No 247
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.30 E-value=0.03 Score=53.97 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccC
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI 186 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~ 186 (397)
.+...+...+..-.+.+|||+|+|+|+-+..+.+. -.++++||.++.|.+.++..+...
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 34444444444345679999999999876655553 348999999999999998877644
No 248
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.14 E-value=0.086 Score=51.18 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=42.8
Q ss_pred cCCCHHHHHHHHHHhcCC-CCCEEEEEcCcccH----HHHHHHHc------CCcEEEEeCCHHHHHHHHHH
Q 015990 123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGS----LTNVLLNA------GATVLAIEKDQHMVGLVRER 182 (397)
Q Consensus 123 fl~~~~i~~~i~~~~~~~-~~~~VLEIG~G~G~----lt~~La~~------~~~V~~vE~d~~~i~~a~~~ 182 (397)
|..|+...+.+.+.+... +.-+|+..||++|- ++..+.+. ..+|+|+|+|+.+++.|++-
T Consensus 96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 677777777766654322 23589999999993 44444442 24799999999999999864
No 249
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.06 E-value=0.0087 Score=57.55 Aligned_cols=60 Identities=25% Similarity=0.396 Sum_probs=48.5
Q ss_pred CCCEEEEEcCcccHHHH-HHHHcCC-cEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccc
Q 015990 141 EGDIVLEIGPGTGSLTN-VLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH 200 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~-~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~ 200 (397)
.+..|+|+.+|.||+|. .+...|+ .|+|+|.++..++.++.+++.++ ...+++||-....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~ 258 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK 258 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC
Confidence 45789999999999999 6666655 79999999999999999987653 4556677765553
No 250
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.86 E-value=0.02 Score=57.58 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=54.9
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC---C-ceEEEEcccccc
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---D-QLKVLQEDFVKC 199 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~---~-~v~ii~gD~~~~ 199 (397)
.++|+.|.|+.||.|-++..+++.++.|++-|.++++++.++.+++.+ + +++++..|+..+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 467889999999999999999999999999999999999999998765 2 589999988765
No 251
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.84 E-value=0.16 Score=52.56 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=59.3
Q ss_pred CCEEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhh----hhHHhhh-cCC
Q 015990 142 GDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM----LSLFERR-KSS 215 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~----~~~~~~~-~~~ 215 (397)
.-+++|+.||.|.++..+-..|. .|.++|+|+.+.+.-+.|+...++...+.+|+.+++..+.. .+..... ...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~ 167 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHI 167 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccC
Confidence 34899999999999999988876 46799999999999988875434556777888887542110 0000000 012
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|++++.+|
T Consensus 168 p~~DvL~gGpP 178 (467)
T PRK10458 168 PDHDVLLAGFP 178 (467)
T ss_pred CCCCEEEEcCC
Confidence 35789999988
No 252
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.75 E-value=0.11 Score=47.68 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccC--Cce-EEEEcccccc
Q 015990 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQL-KVLQEDFVKC 199 (397)
Q Consensus 130 ~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~--~~v-~ii~gD~~~~ 199 (397)
.+-+.+.+. ..+.+|||||||||--+.++++. ..+-.--|.|+....-.++..... +|+ .-+.-|+.+-
T Consensus 15 l~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 15 LEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 333334333 33336999999999999999996 446678899998876666654432 233 2334555544
No 253
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.64 E-value=0.053 Score=49.88 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=46.9
Q ss_pred ccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc------CCcEEEEeCCHHHHHH-HHHHhccCCce
Q 015990 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGL-VRERFASIDQL 189 (397)
Q Consensus 117 k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~~vE~d~~~i~~-a~~~~~~~~~v 189 (397)
.++|...+..|.-.-.+-+.+--.+++.|+|+|.-.|..+...|.. .++|+|||+|-+.... +.+.....+++
T Consensus 8 ~w~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 8 SWLGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI 87 (206)
T ss_dssp EETTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred cCCCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence 3456655555554433333332234689999999999998887752 3699999997554432 22211112589
Q ss_pred EEEEccccccch
Q 015990 190 KVLQEDFVKCHI 201 (397)
Q Consensus 190 ~ii~gD~~~~~~ 201 (397)
++++||..+...
T Consensus 88 ~~i~Gds~d~~~ 99 (206)
T PF04989_consen 88 TFIQGDSIDPEI 99 (206)
T ss_dssp EEEES-SSSTHH
T ss_pred EEEECCCCCHHH
Confidence 999999987654
No 254
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.58 E-value=0.099 Score=51.73 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=57.0
Q ss_pred CEEEEEcCcccHHHHHHHHcCCc-EEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceE
Q 015990 143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~~~-V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~V 221 (397)
-+++|+.||.|.+..-+...|.+ +.++|+|+.+++..+.|+.. -.++.+|+.+...... ....+|++
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---~~~~~~di~~~~~~~~---------~~~~~Dvl 71 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---GDIILGDIKELDGEAL---------RKSDVDVL 71 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---CceeechHhhcChhhc---------cccCCCEE
Confidence 47999999999999999888865 67999999999999998753 4577788877754321 11168999
Q ss_pred eecCC
Q 015990 222 VANIP 226 (397)
Q Consensus 222 v~NlP 226 (397)
++.+|
T Consensus 72 igGpP 76 (328)
T COG0270 72 IGGPP 76 (328)
T ss_pred EeCCC
Confidence 99998
No 255
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.44 E-value=0.26 Score=47.40 Aligned_cols=39 Identities=26% Similarity=0.154 Sum_probs=34.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHH
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a 179 (397)
.+.+||=.|||.|.|+-.++.+|..+.|.|.|--|+-..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s 94 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS 94 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH
Confidence 346899999999999999999999999999999886443
No 256
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.39 E-value=0.15 Score=53.48 Aligned_cols=102 Identities=24% Similarity=0.341 Sum_probs=70.5
Q ss_pred ccCCCccCCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHc---C---CcEEEEeCCHHHHHHHHHHhccC--
Q 015990 117 KSLGQHYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---G---ATVLAIEKDQHMVGLVRERFASI-- 186 (397)
Q Consensus 117 k~~GQnfl~~~~i~~~i~~~~~~~--~~~~VLEIG~G~G~lt~~La~~---~---~~V~~vE~d~~~i~~a~~~~~~~-- 186 (397)
+.-|+ |.++..++..+.+.+... ++..|.|.-||+|.+.....+. + ..++|.|....+...++.+..-+
T Consensus 192 t~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 192 KSGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred CcCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 34466 777888988888877654 5578999999999987654331 2 36999999999999999885321
Q ss_pred --CceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcC
Q 015990 187 --DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (397)
Q Consensus 187 --~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i 229 (397)
+...+..+|-+.-+. .. ....+|.|++|+||..
T Consensus 271 ~~~t~~~~~~dtl~~~d------~~----~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 271 DYANFNIINADTLTTKE------WE----NENGFEVVVSNPPYSI 305 (501)
T ss_pred CccccCcccCCcCCCcc------cc----ccccCCEEeecCCccc
Confidence 134455566554211 00 1245899999999954
No 257
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.30 E-value=0.021 Score=52.19 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=57.1
Q ss_pred CccccCCCccCCCHHHHHHHHHHhcCC---CCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Q 015990 114 FPRKSLGQHYMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (397)
Q Consensus 114 ~~~k~~GQnfl~~~~i~~~i~~~~~~~---~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~ 182 (397)
..--..|.-|+..++-.++++..-++. .+.++||+|+|.|-+|..++..-.+|+|.|.+..|...++..
T Consensus 82 NG~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 82 NGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred ccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence 333456888999999888888765432 456999999999999999998888999999999999988764
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.27 E-value=0.23 Score=45.49 Aligned_cols=97 Identities=13% Similarity=0.198 Sum_probs=70.1
Q ss_pred HHHHHHHH---hcCCCCCEEEEEcCcccHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh
Q 015990 129 INDQLAAA---AAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 129 i~~~i~~~---~~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~ 203 (397)
+...|+.- +.+.+|++||=+|+.+|+...++++- + +.++|||.+++....+-..+...+|+--+.+|+....--.
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR 140 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh
Confidence 44444443 45789999999999999999999986 3 5899999999988777776666679999999997653211
Q ss_pred hhhhHHhhhcCCCCcceEeecCCCcCcHHHH
Q 015990 204 HMLSLFERRKSSSGFAKVVANIPFNISTDVI 234 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il 234 (397)
. -.+..|+|+.+..---..+|+
T Consensus 141 ~---------~Ve~VDviy~DVAQp~Qa~I~ 162 (231)
T COG1889 141 H---------LVEKVDVIYQDVAQPNQAEIL 162 (231)
T ss_pred h---------hcccccEEEEecCCchHHHHH
Confidence 1 124678888886543333443
No 259
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.14 E-value=0.12 Score=52.20 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=68.8
Q ss_pred HHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhH
Q 015990 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSL 208 (397)
Q Consensus 134 ~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~ 208 (397)
+-.+++++|.+|||..+..|.=|.++|.. -+-|+|.|.+...+..+++++...+ |..+...|..+++...
T Consensus 234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~----- 308 (460)
T KOG1122|consen 234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE----- 308 (460)
T ss_pred eeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-----
Confidence 34567899999999999999999999885 3579999999999999999987765 7788889998775321
Q ss_pred HhhhcCCCCcceEeecCCCc
Q 015990 209 FERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 209 ~~~~~~~~~~d~Vv~NlPy~ 228 (397)
-++.||.|+.+-|=.
T Consensus 309 -----~~~~fDRVLLDAPCS 323 (460)
T KOG1122|consen 309 -----FPGSFDRVLLDAPCS 323 (460)
T ss_pred -----cCcccceeeecCCCC
Confidence 124799999888843
No 260
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.07 E-value=0.14 Score=50.97 Aligned_cols=44 Identities=32% Similarity=0.453 Sum_probs=36.8
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 015990 138 AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 138 ~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~ 181 (397)
+..+-+.|+|+|.|.|+++..|+-. |..|.|||-|..+.+.|+.
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3445678999999999999999865 7799999999888777654
No 261
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.06 E-value=0.082 Score=51.38 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=52.9
Q ss_pred EEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccccccchhhhhhhHHhhhcCCCCcce
Q 015990 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (397)
Q Consensus 146 LEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (397)
+|||+|.-.+-..+..+ +...+++|+|+..++.|+++...++ .+.+++....+.-+.+. ... .....+|.
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~----~~~-~~e~~ydF 181 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDA----LKE-ESEIIYDF 181 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhh----hcc-CccceeeE
Confidence 68888766655444433 6689999999999999999987664 56677665433322211 110 12345899
Q ss_pred EeecCCCcCc
Q 015990 221 VVANIPFNIS 230 (397)
Q Consensus 221 Vv~NlPy~i~ 230 (397)
+.+|+||.-.
T Consensus 182 cMcNPPFfe~ 191 (419)
T KOG2912|consen 182 CMCNPPFFEN 191 (419)
T ss_pred EecCCchhhc
Confidence 9999998543
No 262
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.94 E-value=0.41 Score=44.38 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHhccCC---ceEEEEcccccc
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~~~~ 199 (397)
.+..+.||||--|+|+.+|.+.+ ..+++.|+++..++.|.+++..++ .+++..+|.+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~ 79 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV 79 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc
Confidence 44569999999999999999974 489999999999999999987764 788888888654
No 263
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.89 E-value=0.11 Score=47.99 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=38.6
Q ss_pred HHHHHHHHHh----cCCCCCEEEEEcCcccHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhc
Q 015990 128 EINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFA 184 (397)
Q Consensus 128 ~i~~~i~~~~----~~~~~~~VLEIG~G~G~lt~~La~~----~~~V~~vE~d~~~i~~a~~~~~ 184 (397)
.++..|.+.+ .-..+-++.|..||.|++.-.+.-. -..|+|-|+|+++++.|++|+.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 3444454443 3345568999999999997665542 2479999999999999998764
No 264
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=93.88 E-value=0.19 Score=46.31 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCC-CCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhh
Q 015990 129 INDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (397)
Q Consensus 129 i~~~i~~~~~~~~-~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~ 207 (397)
=++.|++++.-.+ +-.|-|+|||.+.++..+. .+.+|...|+-.. ++ .++.+|+.++|+++
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-----------n~--~Vtacdia~vPL~~---- 120 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-----------NP--RVTACDIANVPLED---- 120 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------ST--TEEES-TTS-S--T----
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-----------CC--CEEEecCccCcCCC----
Confidence 3678888886544 4589999999999996653 4568999997542 12 37789999998753
Q ss_pred HHhhhcCCCCcceEeecCCCcCcH------HHHHHhccCCCc
Q 015990 208 LFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDI 243 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy~i~s------~il~~L~~~g~~ 243 (397)
+..|++|-.|-..-+. +-.+.|+++|.+
T Consensus 121 --------~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L 154 (219)
T PF05148_consen 121 --------ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGIL 154 (219)
T ss_dssp --------T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEE
T ss_pred --------CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEE
Confidence 5688888777653322 334455666544
No 265
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.80 E-value=0.16 Score=48.68 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCC-CCCEEEEEcCcccHH--HHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCCc--eEEEEcccccc
Q 015990 128 EINDQLAAAAAVQ-EGDIVLEIGPGTGSL--TNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVKC 199 (397)
Q Consensus 128 ~i~~~i~~~~~~~-~~~~VLEIG~G~G~l--t~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~~--v~ii~gD~~~~ 199 (397)
..+.+.+..+.-. .=...||||||.-+. +-..++. .++|+-||+|+-.+.+++..+..+++ ..++++|+.+.
T Consensus 54 ~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 54 AFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp HHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred HHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 3444555554434 446899999997543 4455553 67999999999999999999987766 89999999876
Q ss_pred c
Q 015990 200 H 200 (397)
Q Consensus 200 ~ 200 (397)
.
T Consensus 134 ~ 134 (267)
T PF04672_consen 134 E 134 (267)
T ss_dssp H
T ss_pred H
Confidence 4
No 266
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.66 E-value=0.085 Score=50.38 Aligned_cols=105 Identities=13% Similarity=0.211 Sum_probs=74.3
Q ss_pred CccccCCCccCCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHH-HH--HHHcCCcEEEEeCCHHHHHHHHHHhccCC-
Q 015990 114 FPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLT-NV--LLNAGATVLAIEKDQHMVGLVRERFASID- 187 (397)
Q Consensus 114 ~~~k~~GQnfl~~~~i~~~i~~~~--~~~~~~~VLEIG~G~G~lt-~~--La~~~~~V~~vE~d~~~i~~a~~~~~~~~- 187 (397)
.|...+.|.|.+++..+.+++-.- +--.|+.|+=+| ---|| .+ |.....+|..||+|++++...++..+..+
T Consensus 123 ~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~ 200 (354)
T COG1568 123 EPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY 200 (354)
T ss_pred CcchhcccccccccceeeeeeeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc
Confidence 556789999999988776654322 223567899998 33333 33 33346799999999999998887766544
Q ss_pred -ceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCCcCc
Q 015990 188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (397)
Q Consensus 188 -~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~ 230 (397)
|++.+.-|..+.-.++. ..+||+++.+||+.+.
T Consensus 201 ~~ie~~~~Dlr~plpe~~----------~~kFDvfiTDPpeTi~ 234 (354)
T COG1568 201 NNIEAFVFDLRNPLPEDL----------KRKFDVFITDPPETIK 234 (354)
T ss_pred cchhheeehhcccChHHH----------HhhCCeeecCchhhHH
Confidence 68888888876543321 2589999999998764
No 267
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.62 E-value=0.47 Score=45.77 Aligned_cols=58 Identities=31% Similarity=0.373 Sum_probs=38.1
Q ss_pred CEEEEEcCcccHHHH-HHHHc---CCcEEEEeCCHHHHHHHHHHhcc----CCceEEEEccccccc
Q 015990 143 DIVLEIGPGTGSLTN-VLLNA---GATVLAIEKDQHMVGLVRERFAS----IDQLKVLQEDFVKCH 200 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~-~La~~---~~~V~~vE~d~~~i~~a~~~~~~----~~~v~ii~gD~~~~~ 200 (397)
++|+=||+|.=-+|. .|++. +..|+++|+|+++++.+++..+. ..+++++.+|+.+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~ 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence 499999999766665 44443 45799999999999999987762 237999999998764
No 268
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=93.30 E-value=0.78 Score=44.41 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc----CCcEEEEeCCHHHHHHHHHHhccCC--ce-EEEEcccccc
Q 015990 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID--QL-KVLQEDFVKC 199 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~~vE~d~~~i~~a~~~~~~~~--~v-~ii~gD~~~~ 199 (397)
..+-+||||.||.|..-...... ..+|...|.++..++..++.++..+ ++ ++.++|+.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 35669999999999987666553 2479999999999999999887654 55 9999999875
No 269
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=0.16 Score=44.24 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchh
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~ 202 (397)
+-++..+..+.-.+..+.+|+|.|.|.+-...++.| ..-+|+|+++=++.+++-..-.. ....+..-|.-++++.
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 344556666666666789999999999999998887 58999999999998877654222 3667777787777653
No 270
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=93.21 E-value=0.23 Score=49.36 Aligned_cols=89 Identities=24% Similarity=0.270 Sum_probs=64.9
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHcCC------cEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchhhhhhh
Q 015990 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGA------TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLS 207 (397)
Q Consensus 136 ~~~~~~~~~VLEIG~G~G~lt~~La~~~~------~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~ 207 (397)
.++++++++|||..+..|.=|..|.+..+ .|++=|.|......+....... +++.+...|+..++-...- +
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~-~ 228 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK-D 228 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-c
Confidence 46788999999999999999999988533 7999999999998888777543 3677777777666432100 0
Q ss_pred HHhhhcCCCCcceEeecCCC
Q 015990 208 LFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlPy 227 (397)
.-+ .....||.|+.+.|=
T Consensus 229 ~~~--~~~~~fDrVLvDVPC 246 (375)
T KOG2198|consen 229 GND--KEQLKFDRVLVDVPC 246 (375)
T ss_pred Cch--hhhhhcceeEEeccc
Confidence 000 023579999999984
No 271
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.19 E-value=0.27 Score=46.68 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=35.1
Q ss_pred CCEEEEEcCcccHHHHHHHHc----------CCcEEEEeCCHHHHHHHHHHhcc
Q 015990 142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS 185 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~----------~~~V~~vE~d~~~i~~a~~~~~~ 185 (397)
.-+|+|+|+|.|.++.-+++. ..+++-||+++.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 368999999999999888762 13799999999999998888765
No 272
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=0.47 Score=47.15 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=47.0
Q ss_pred ccCCCHHHHH--------HHHHHh---cCCCCCEEEEEcCcccHHHHHHHHc----------CCcEEEEeCCHHHHHHHH
Q 015990 122 HYMLNSEIND--------QLAAAA---AVQEGDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVR 180 (397)
Q Consensus 122 nfl~~~~i~~--------~i~~~~---~~~~~~~VLEIG~G~G~lt~~La~~----------~~~V~~vE~d~~~i~~a~ 180 (397)
.|++.|++-+ ++++.. .....-.++|||+|.|.+..-+++. ..++.-||.|+++.+.=+
T Consensus 47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred CeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 6888766643 233322 3333457999999999998877652 458999999999999888
Q ss_pred HHhcc
Q 015990 181 ERFAS 185 (397)
Q Consensus 181 ~~~~~ 185 (397)
++++.
T Consensus 127 ~~L~~ 131 (370)
T COG1565 127 ETLKA 131 (370)
T ss_pred HHHhc
Confidence 88764
No 273
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=92.19 E-value=0.33 Score=46.13 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCC-CEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhh
Q 015990 128 EINDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~-~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~ 206 (397)
+-++.|++.+...++ ..|-|+|||-+-++. ..-.+|+..|+-+ .|-.++.+|+.++++++
T Consensus 166 nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl~d--- 226 (325)
T KOG3045|consen 166 NPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRNVPLED--- 226 (325)
T ss_pred ChHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccCCcCcc---
Confidence 346677777765544 468899999998765 3456799998642 24568899999998753
Q ss_pred hHHhhhcCCCCcceEeecCCCcCc------HHHHHHhccCCCc
Q 015990 207 SLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDI 243 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~NlPy~i~------s~il~~L~~~g~~ 243 (397)
...|++|..|....+ .+..+.|.++|.+
T Consensus 227 ---------~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l 260 (325)
T KOG3045|consen 227 ---------ESVDVAVFCLSLMGTNLADFIKEANRILKPGGLL 260 (325)
T ss_pred ---------CcccEEEeeHhhhcccHHHHHHHHHHHhccCceE
Confidence 567887766654322 2344556666654
No 274
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=91.78 E-value=0.11 Score=42.04 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=23.5
Q ss_pred EEEcCcccHHHHHHHHc---C--CcEEEEeCCHH---HHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 146 LEIGPGTGSLTNVLLNA---G--ATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 146 LEIG~G~G~lt~~La~~---~--~~V~~vE~d~~---~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
||||+..|..|..+++. . .++++||..+. .-+.+++ ....++++++++|..+.-. .+ ...+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~-----~~-----~~~~ 69 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLP-----SL-----PDGP 69 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHH-----HH-----HH--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHH-----Hc-----CCCC
Confidence 69999999999998873 2 37999999994 3334433 2222489999999966521 11 1257
Q ss_pred cceEeecCC
Q 015990 218 FAKVVANIP 226 (397)
Q Consensus 218 ~d~Vv~NlP 226 (397)
+|.++-+-.
T Consensus 70 ~dli~iDg~ 78 (106)
T PF13578_consen 70 IDLIFIDGD 78 (106)
T ss_dssp EEEEEEES-
T ss_pred EEEEEECCC
Confidence 888887653
No 275
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=91.48 E-value=0.7 Score=44.48 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcc
Q 015990 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185 (397)
Q Consensus 125 ~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~ 185 (397)
.+..+..+++.. ...+++.|||.-+|+|+........+.+.+|+|++++.++.+.+++..
T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence 345677777777 667899999999999999988888899999999999999999999864
No 276
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.43 E-value=0.19 Score=46.02 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=45.2
Q ss_pred CCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcc---------CCceEEEEcccccc
Q 015990 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---------IDQLKVLQEDFVKC 199 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~---------~~~v~ii~gD~~~~ 199 (397)
.-...|||||-|.+...|+.. ..-+.|.||--..-++.++++.. ..|+.+...++..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 346899999999999999987 44689999988888877776642 13677777777665
No 277
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.28 E-value=0.81 Score=40.61 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=61.4
Q ss_pred CCccCCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHH-HHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccc
Q 015990 120 GQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVL-LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196 (397)
Q Consensus 120 GQnfl~~~~i~~~i~~~~~~--~~~~~VLEIG~G~G~lt~~L-a~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~ 196 (397)
.| |--+...++.+++.+.- .++.+|+=|||=+-+....- ...+.+++..|+|.+..... ++ +++.-|.
T Consensus 3 sQ-fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD~ 73 (162)
T PF10237_consen 3 SQ-FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYDY 73 (162)
T ss_pred cc-cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECCC
Confidence 45 66667777777776643 45678999998655444333 11366899999998874421 23 4666666
Q ss_pred cccchhhhhhhHHhhhcCCCCcceEeecCCCcCcHHHH
Q 015990 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234 (397)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~i~s~il 234 (397)
.+... +.+. ..+.+|+||.+||| ++.++.
T Consensus 74 ~~p~~---~~~~-----l~~~~d~vv~DPPF-l~~ec~ 102 (162)
T PF10237_consen 74 NEPEE---LPEE-----LKGKFDVVVIDPPF-LSEECL 102 (162)
T ss_pred CChhh---hhhh-----cCCCceEEEECCCC-CCHHHH
Confidence 54311 1111 13689999999999 666665
No 278
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=91.04 E-value=0.42 Score=43.78 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=29.0
Q ss_pred CCCEEEEEcCcccH----HHHHHHHc----C---CcEEEEeCCHHHHHHHHH
Q 015990 141 EGDIVLEIGPGTGS----LTNVLLNA----G---ATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 141 ~~~~VLEIG~G~G~----lt~~La~~----~---~~V~~vE~d~~~i~~a~~ 181 (397)
+.-+|+.+||++|- ++..+.+. . .+|+|.|+|+.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 44589999999994 44444441 2 389999999999999975
No 279
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=90.94 E-value=0.33 Score=39.97 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhc----CCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCC
Q 015990 127 SEINDQLAAAAA----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172 (397)
Q Consensus 127 ~~i~~~i~~~~~----~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d 172 (397)
-.++..++..-. ..+...-+|||||.|.|.-.|.+.|.+=.|+|.-
T Consensus 40 laIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 40 LAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 344455554432 2234578999999999999999999998899853
No 280
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.77 E-value=0.36 Score=49.89 Aligned_cols=56 Identities=25% Similarity=0.378 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcC--CCC--CEEEEEcCcccHHHHHHHHcCCcEEEEe---CCHHHHHHHHHH
Q 015990 127 SEINDQLAAAAAV--QEG--DIVLEIGPGTGSLTNVLLNAGATVLAIE---KDQHMVGLVRER 182 (397)
Q Consensus 127 ~~i~~~i~~~~~~--~~~--~~VLEIG~G~G~lt~~La~~~~~V~~vE---~d~~~i~~a~~~ 182 (397)
...++.|.+.+.. ..+ ..+||||||+|.++..|.+++-.+..+- ..+..++.|-++
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR 161 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER 161 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc
Confidence 4556677777665 222 3799999999999999999876554443 344556666554
No 281
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.54 E-value=0.35 Score=48.48 Aligned_cols=110 Identities=12% Similarity=0.230 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC--CcEEEEeCCHHHHHHHHHH----------hcc-CCceEEE
Q 015990 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER----------FAS-IDQLKVL 192 (397)
Q Consensus 126 ~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~~vE~d~~~i~~a~~~----------~~~-~~~v~ii 192 (397)
.++-...+++.+++.++|.-.|+|.|.|.+...++..+ ..=+|+|+.....+.+..+ +.. .+.++.+
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 35666788899999999999999999999988887753 3677888876555544332 222 2368899
Q ss_pred EccccccchhhhhhhHHhhhcCCCCcceEeec-CCC------cCcHHHHHHhccCCCcee
Q 015990 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF------NISTDVIKQLLPMGDIFS 245 (397)
Q Consensus 193 ~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~N-lPy------~i~s~il~~L~~~g~~~~ 245 (397)
++++.......++. ...++|+.| .-| .+. .|+..+..+-+++.
T Consensus 257 ~gsf~~~~~v~eI~---------~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQ---------TEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIIS 306 (419)
T ss_pred ccccCCHHHHHHHh---------hcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEec
Confidence 99998876543321 234555554 433 222 56667776655544
No 282
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=89.99 E-value=0.63 Score=44.07 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=48.9
Q ss_pred EEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecC
Q 015990 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (397)
Q Consensus 146 LEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (397)
|...||+-.++..+++...+++.+|+.+.-.+.+++++....++++.+.|..+.-.. ++. ...+.-+|+-++
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~a-----llP---P~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKA-----LLP---PPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHH-----H-S----TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhh-----hCC---CCCCCeEEEECC
Confidence 889999999999999988999999999999999999988767999999998775221 111 223456899999
Q ss_pred CCcCcHH
Q 015990 226 PFNISTD 232 (397)
Q Consensus 226 Py~i~s~ 232 (397)
||...++
T Consensus 134 pYE~~~d 140 (245)
T PF04378_consen 134 PYEQKDD 140 (245)
T ss_dssp ---STTH
T ss_pred CCCCchH
Confidence 9988764
No 283
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=89.06 E-value=0.58 Score=46.22 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=48.3
Q ss_pred CCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEcccccc
Q 015990 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~ 199 (397)
-+..+|+|.|+|.++..+...-.+|-+|+.|...+-.++..+. +.|+.+.||+..-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD 233 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccccccc
Confidence 3789999999999999999976789999999999988888775 3488889998765
No 284
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.48 E-value=1.4 Score=35.92 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHc---CC-cEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecC
Q 015990 150 PGTGSLTNVLLNA---GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (397)
Q Consensus 150 ~G~G~lt~~La~~---~~-~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (397)
||.|.++..+++. +. +|+.+|.|++.++.+++. .+.++.||+.+...-... .....+.++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~l~~a--------~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEVLERA--------GIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHHHHHT--------TGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhHHhhc--------CccccCEEEEcc
Confidence 5677888777763 44 899999999998888775 378999999887532110 224566666655
Q ss_pred C
Q 015990 226 P 226 (397)
Q Consensus 226 P 226 (397)
+
T Consensus 71 ~ 71 (116)
T PF02254_consen 71 D 71 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.46 E-value=3.1 Score=41.29 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=60.2
Q ss_pred HHhcCCCCCEEEEEcCc-ccHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHhccCCceEEEEcc-ccccchhhhhhhHHhh
Q 015990 135 AAAAVQEGDIVLEIGPG-TGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQED-FVKCHIRSHMLSLFER 211 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~G-~G~lt~~La~-~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD-~~~~~~~~~~~~~~~~ 211 (397)
...++.++++|+=+|+| .|.++..+++ .+++|+++|++++-.+.|++.-. -.++... ......
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA----d~~i~~~~~~~~~~---------- 225 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA----DHVINSSDSDALEA---------- 225 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC----cEEEEcCCchhhHH----------
Confidence 34678899998888776 5677888888 58999999999999999988632 2333322 111110
Q ss_pred hcCCCCcceEeecCCCcCcHHHHHHhccCCCc
Q 015990 212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDI 243 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~ 243 (397)
..+.+|.++.-.|..-..+.+..|..+|.+
T Consensus 226 --~~~~~d~ii~tv~~~~~~~~l~~l~~~G~~ 255 (339)
T COG1064 226 --VKEIADAIIDTVGPATLEPSLKALRRGGTL 255 (339)
T ss_pred --hHhhCcEEEECCChhhHHHHHHHHhcCCEE
Confidence 012378887777733334455666666654
No 286
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=88.31 E-value=1.7 Score=39.53 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=61.3
Q ss_pred cccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHhccCCce
Q 015990 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQL 189 (397)
Q Consensus 116 ~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~~vE~d~~~i~~a~~~~~~~~~v 189 (397)
..+.|-+.+..+.-.-.+-+.+--.+++.|+|+|.--|..+...|.. | .+|+++|+|-+-...+... .+++
T Consensus 44 ~twmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i 120 (237)
T COG3510 44 YTWMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDI 120 (237)
T ss_pred eeEecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCe
Confidence 34667777777766655555554456689999999999998888763 5 5899999986654433322 3689
Q ss_pred EEEEccccccchhh
Q 015990 190 KVLQEDFVKCHIRS 203 (397)
Q Consensus 190 ~ii~gD~~~~~~~~ 203 (397)
.+++|+-.+....+
T Consensus 121 ~f~egss~dpai~e 134 (237)
T COG3510 121 LFIEGSSTDPAIAE 134 (237)
T ss_pred EEEeCCCCCHHHHH
Confidence 99999988776543
No 287
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.54 E-value=1.7 Score=41.64 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcC-------CcEEEEeCCHHHHHHHHHHhccC---CceEEEEcccc
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~-------~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~ 197 (397)
.++..|.+.--+.++..++|.|||.|.|+.++++.- ..++.||....-.+ ....+... +.++=+..|+.
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEee
Confidence 344444444345677799999999999999998842 47899998553322 22222222 25777888998
Q ss_pred ccchhh
Q 015990 198 KCHIRS 203 (397)
Q Consensus 198 ~~~~~~ 203 (397)
++++..
T Consensus 84 dl~l~~ 89 (259)
T PF05206_consen 84 DLDLSK 89 (259)
T ss_pred ccchhh
Confidence 887653
No 288
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=87.41 E-value=1.2 Score=41.98 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=62.2
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhh
Q 015990 136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (397)
Q Consensus 136 ~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~ 212 (397)
.+.++++.+||=+|+++|+.-...++- ..-|+|||.++..=..+-.-.+..+|+--+..|+....---
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR--------- 221 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR--------- 221 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee---------
Confidence 345789999999999999998888885 34699999987655544444444468888888987642100
Q ss_pred cCCCCcceEeecCCCcCcHHHH
Q 015990 213 KSSSGFAKVVANIPFNISTDVI 234 (397)
Q Consensus 213 ~~~~~~d~Vv~NlPy~i~s~il 234 (397)
...+-.|+|+++++--....|+
T Consensus 222 mlVgmVDvIFaDvaqpdq~Riv 243 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIV 243 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhh
Confidence 0124678999998754444443
No 289
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.40 E-value=1 Score=45.02 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=55.7
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEcccccc
Q 015990 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC 199 (397)
Q Consensus 133 i~~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~ 199 (397)
....+++.+|..|+|+.|..|.-|..++.. -.+++|+|.|++.++..+..+...+ .++.+++|++..
T Consensus 205 pA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 205 PAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred hhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 345567778899999999999999999874 4689999999999999888765443 778889999985
No 290
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=86.99 E-value=0.68 Score=42.24 Aligned_cols=41 Identities=29% Similarity=0.469 Sum_probs=32.6
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHc-C--CcEEEEeCCH
Q 015990 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQ 173 (397)
Q Consensus 133 i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~~vE~d~ 173 (397)
++...+++++.+|+|+-+|.|+.|+.++.. | +.|+++-.++
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 345568899999999999999999999985 2 3788775544
No 291
>PRK12829 short chain dehydrogenase; Provisional
Probab=86.90 E-value=5.6 Score=36.97 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=52.1
Q ss_pred CCCCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
..++.+||=.|++ |.++..+++ +|.+|++++.+++..+...+..... ++.++.+|+.+..-.....+.... .
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~--~ 83 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAVE--R 83 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHHH--H
Confidence 3466889988864 666665544 5889999999987766655544322 578899998875422111111111 1
Q ss_pred CCCcceEeecCC
Q 015990 215 SSGFAKVVANIP 226 (397)
Q Consensus 215 ~~~~d~Vv~NlP 226 (397)
.+..|.||.|..
T Consensus 84 ~~~~d~vi~~ag 95 (264)
T PRK12829 84 FGGLDVLVNNAG 95 (264)
T ss_pred hCCCCEEEECCC
Confidence 245788887654
No 292
>PRK07454 short chain dehydrogenase; Provisional
Probab=86.71 E-value=5.8 Score=36.48 Aligned_cols=83 Identities=10% Similarity=0.030 Sum_probs=51.0
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
..+++|=.|+ +|.++..+ +++|.+|++++.+++-.+.+.+.+.. ..++.++.+|+.+........+...+ ..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE--QF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence 4567888884 55555544 44688999999998766555544433 24788999999876432111111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|.-
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 45788887754
No 293
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.56 E-value=4.6 Score=37.56 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=52.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
.++++|=.|++.|. ++..|++.|.+|+.++.+++..+...+.+... +++..+.+|+.+..--..+.+...+ ..+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA--ELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH--HhC
Confidence 46789999975432 23445556899999999988777666555433 3678889998775432212111111 124
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|..
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 6788887754
No 294
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.38 E-value=5.4 Score=39.30 Aligned_cols=52 Identities=29% Similarity=0.496 Sum_probs=43.4
Q ss_pred HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhc
Q 015990 132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA 184 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~-G~lt~~La~~-~-~~V~~vE~d~~~i~~a~~~~~ 184 (397)
......+++.|.+||=+|+|+ |.+|...|+. | .+|+.+|+++..++.|++ +.
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~G 214 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FG 214 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hC
Confidence 445567889999999999996 7777777775 5 489999999999999999 53
No 295
>PLN02253 xanthoxin dehydrogenase
Probab=86.11 E-value=5 Score=37.96 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
++++|=.|+ +|.++..+ ++.|++|+.++.+++..+.+.+.+....++.++.+|+.+...-+.+.+...+ ..+.
T Consensus 18 ~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~--~~g~ 94 (280)
T PLN02253 18 GKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVD--KFGT 94 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHH--HhCC
Confidence 567888884 45555544 4568899999998876665555554334788999999876432222221111 1246
Q ss_pred cceEeecC
Q 015990 218 FAKVVANI 225 (397)
Q Consensus 218 ~d~Vv~Nl 225 (397)
.|.+|.|.
T Consensus 95 id~li~~A 102 (280)
T PLN02253 95 LDIMVNNA 102 (280)
T ss_pred CCEEEECC
Confidence 78888664
No 296
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.59 E-value=4.9 Score=37.74 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=49.1
Q ss_pred CCCEEEEEcCccc-HH----HHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTG-SL----TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G-~l----t~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++.+|=.|.+.| .+ +..+++.|++|+.++.+++..+.+++.....+.+.++..|+.+..--+.+.+...+ ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAE--EW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHH--Hc
Confidence 4678999997642 34 34555568999999988654333333322223455778888776432222222221 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|++|.|.-
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 56889988853
No 297
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=85.58 E-value=2.2 Score=41.09 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=31.3
Q ss_pred CCEEEEEcCccc----HHHHHHHHc-------CCcEEEEeCCHHHHHHHHH
Q 015990 142 GDIVLEIGPGTG----SLTNVLLNA-------GATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 142 ~~~VLEIG~G~G----~lt~~La~~-------~~~V~~vE~d~~~i~~a~~ 181 (397)
.-+|+.+||++| .++..|.+. ..+|+|.|+|..+++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 568999999999 344444443 2479999999999999875
No 298
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=85.39 E-value=2.7 Score=39.82 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=63.6
Q ss_pred EEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecC
Q 015990 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (397)
Q Consensus 146 LEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~Nl 225 (397)
|...||+--++..+.+...++.+.|+-++=.+.+++++....++.+..+|.....-..+ -..+..-.|+-++
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~L--------PP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHL--------PPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhC--------CCCCcceEEEeCC
Confidence 89999999999999998889999999999999999999876799999999754321100 1234456899999
Q ss_pred CCcCcHH
Q 015990 226 PFNISTD 232 (397)
Q Consensus 226 Py~i~s~ 232 (397)
||....+
T Consensus 165 PfE~~~e 171 (279)
T COG2961 165 PFELKDE 171 (279)
T ss_pred CcccccH
Confidence 9987654
No 299
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=85.32 E-value=2.7 Score=41.98 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=49.6
Q ss_pred CCEEEEEcCcccHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhccC-C-ceEEEEcccccc
Q 015990 142 GDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKC 199 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~-~~-~V~~vE~d~~~i~~a~~~~~~~-~-~v~ii~gD~~~~ 199 (397)
..+|+|.=+|+|.=++..+.. +. +|+.-|+++++++..++|...+ + +..+++.|+..+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~l 114 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANAL 114 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHH
Confidence 679999999999999988875 44 7999999999999999999876 3 677777887665
No 300
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.14 E-value=1.2 Score=41.86 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 015990 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (397)
Q Consensus 128 ~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~ 184 (397)
.++.+|.+.++..+..+++|+-||+|..+..+...+..|+.-|+++..+...+..+.
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHh
Confidence 356677777764367899999999999999988888999999999999888875554
No 301
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.03 E-value=0.9 Score=43.70 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=37.9
Q ss_pred HHHHHHHHHh--c-CCCCCEEEEEcCcccHHHHHHHHcC-CcEEEEeCCHHHHH
Q 015990 128 EINDQLAAAA--A-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVG 177 (397)
Q Consensus 128 ~i~~~i~~~~--~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~~vE~d~~~i~ 177 (397)
..+..+.+.+ . ...+++|||+|||.|.........+ ..+...|.+.+.++
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 3444454442 2 2468899999999999999888887 68999999988764
No 302
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.95 E-value=4.6 Score=39.27 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=57.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
.|+.||==|.|.|. ++..+|++|++++..|++++-.+.-.+.+...++++...+|..+.+.-....+.+++ ..+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~--e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKK--EVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHH--hcCC
Confidence 57788888888763 356667789999999999988777666666556889999999887533222222222 3467
Q ss_pred cceEeec
Q 015990 218 FAKVVAN 224 (397)
Q Consensus 218 ~d~Vv~N 224 (397)
.+++|-|
T Consensus 115 V~ILVNN 121 (300)
T KOG1201|consen 115 VDILVNN 121 (300)
T ss_pred ceEEEec
Confidence 7888877
No 303
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.86 E-value=6.6 Score=35.86 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=41.2
Q ss_pred CCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccc
Q 015990 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~ 200 (397)
+..||=+| |+|.++..++ ++|.+|++++.++.-.+.+.+.+....+++++.+|+.+..
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~ 67 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEA 67 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHH
Confidence 56788888 4666666555 4588999999998766655554433256888999987653
No 304
>PRK06949 short chain dehydrogenase; Provisional
Probab=84.57 E-value=7 Score=36.23 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+++||=.| |+|.++..+++ .|.+|++++.+++.++.+...+.. ..+++++.+|+.+...-....+.... ..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET--EA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH--hc
Confidence 467888888 55666555554 578999999998877666655432 24788999998765321111111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 46788887754
No 305
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.46 E-value=7 Score=35.96 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=50.7
Q ss_pred CCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhh-hhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~-~~~~~~~~~~~ 216 (397)
+.+||=+|++ |.++. .|+++|.+|++++.+++-.+.+...+....++.++.+|+.+....... ....+ ..+
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~ 80 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALE---RFG 80 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---HhC
Confidence 4577777753 44444 445568899999999876666555544334688999998876432111 11111 224
Q ss_pred CcceEeecCCC
Q 015990 217 GFAKVVANIPF 227 (397)
Q Consensus 217 ~~d~Vv~NlPy 227 (397)
.+|.||.|..+
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 67888877643
No 306
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.43 E-value=5.7 Score=40.28 Aligned_cols=91 Identities=21% Similarity=0.332 Sum_probs=63.7
Q ss_pred CEEEEEcCcc-cHHHHH-HHHcC-CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 143 DIVLEIGPGT-GSLTNV-LLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 143 ~~VLEIG~G~-G~lt~~-La~~~-~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
.+||=||||. |.-... |++.+ .+|+..|.+.+-.+.+..... ++++.++-|+.+.+-. .+++ ..+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al---~~li------~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDAL---VALI------KDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHH---HHHH------hcCC
Confidence 4688999953 433333 34455 699999999888877766543 3789999999887421 1122 3458
Q ss_pred eEeecCCCcCcHHHHHHhccCCCce
Q 015990 220 KVVANIPFNISTDVIKQLLPMGDIF 244 (397)
Q Consensus 220 ~Vv~NlPy~i~s~il~~L~~~g~~~ 244 (397)
+|+.-+|++....+++..++.|...
T Consensus 71 ~VIn~~p~~~~~~i~ka~i~~gv~y 95 (389)
T COG1748 71 LVINAAPPFVDLTILKACIKTGVDY 95 (389)
T ss_pred EEEEeCCchhhHHHHHHHHHhCCCE
Confidence 9999999988888888777766543
No 307
>PRK09072 short chain dehydrogenase; Provisional
Probab=84.27 E-value=8.1 Score=36.11 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=51.9
Q ss_pred CCCEEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
++.+||=.|++ |.++ ..++++|.+|++++.+++-.+.+...+...+++.++.+|+.+......+.+... ..+
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~~~ 79 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAR---EMG 79 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH---hcC
Confidence 35678888855 3444 445556899999999988776665555333478899999887643222222111 124
Q ss_pred CcceEeecCCC
Q 015990 217 GFAKVVANIPF 227 (397)
Q Consensus 217 ~~d~Vv~NlPy 227 (397)
..|.+|.|-.+
T Consensus 80 ~id~lv~~ag~ 90 (263)
T PRK09072 80 GINVLINNAGV 90 (263)
T ss_pred CCCEEEECCCC
Confidence 57888877443
No 308
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.21 E-value=7.4 Score=36.15 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=52.3
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+++||=.| |+|.++..+++ .|.+|+.++.+++..+.+.+.+... .++.++.+|+.+...-..+.+... ...
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE--AEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence 467898888 45666655544 5889999999987766655555432 368888999887543222211111 122
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|..
T Consensus 86 ~~~d~li~~ag 96 (255)
T PRK07523 86 GPIDILVNNAG 96 (255)
T ss_pred CCCCEEEECCC
Confidence 46788887754
No 309
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.17 E-value=6.4 Score=36.53 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=49.9
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
++++||=.|+ +|.++.. |++.|.+|+.++.+++..+.+.+.+... .++.++.+|+.+....+...+.... ..
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 82 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAE--RF 82 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence 3567886665 4455444 4556889999999987666555554332 3688899998876532212111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.||.|.-
T Consensus 83 ~~~d~vi~~ag 93 (262)
T PRK13394 83 GSVDILVSNAG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 45788877653
No 310
>PRK06194 hypothetical protein; Provisional
Probab=84.12 E-value=7 Score=37.05 Aligned_cols=82 Identities=7% Similarity=0.047 Sum_probs=49.1
Q ss_pred CCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.+||=.|. +|.++.. |++.|.+|+.++.+.+..+...+.+.. ..++.++.+|+.+...-+...+...+ ..+
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~~g 82 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALE--RFG 82 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence 467887774 4545444 445688999999988766655444432 23688899999775422111111111 124
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.|+.|.-
T Consensus 83 ~id~vi~~Ag 92 (287)
T PRK06194 83 AVHLLFNNAG 92 (287)
T ss_pred CCCEEEECCC
Confidence 5788887754
No 311
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=83.94 E-value=7.3 Score=36.31 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEcccccc
Q 015990 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKC 199 (397)
Q Consensus 129 i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~ 199 (397)
+.....+.+. .+|.+||+||-|.|.....+.++ -.+-+-||..++..+..+..--. ..||.++.|--.+.
T Consensus 90 iMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv 161 (271)
T KOG1709|consen 90 IMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDV 161 (271)
T ss_pred HHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhh
Confidence 3334444444 67889999999999998888876 44778899999999999887432 24888888765544
No 312
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=83.92 E-value=2.5 Score=44.12 Aligned_cols=58 Identities=21% Similarity=0.494 Sum_probs=45.1
Q ss_pred EEEEEcCcccHHHHHHHH------cCCcEEEEeCCHHHHHHHHHH-hccC-CceEEEEccccccch
Q 015990 144 IVLEIGPGTGSLTNVLLN------AGATVLAIEKDQHMVGLVRER-FASI-DQLKVLQEDFVKCHI 201 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~------~~~~V~~vE~d~~~i~~a~~~-~~~~-~~v~ii~gD~~~~~~ 201 (397)
.|.=+|.|-|-+.....+ +.-++++||.+|.++-.++.. +... ++|+++.+|+.++..
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a 435 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA 435 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC
Confidence 577889999999765554 234899999999999888763 2222 489999999999864
No 313
>PRK08226 short chain dehydrogenase; Provisional
Probab=83.42 E-value=8.1 Score=36.01 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
.+.++|=.|+ +|.++..+++ .|.+|+.++.++...+.+++......++.++.+|+.+....+.+.+.... ..+
T Consensus 5 ~~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~~ 81 (263)
T PRK08226 5 TGKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE--KEG 81 (263)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence 3568888885 4556555544 58899999998875544444332234678889999775432212111111 224
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|.-
T Consensus 82 ~id~vi~~ag 91 (263)
T PRK08226 82 RIDILVNNAG 91 (263)
T ss_pred CCCEEEECCC
Confidence 5788887643
No 314
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.29 E-value=7.6 Score=35.90 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=52.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhh-hhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~-~~~~~~~~~~~~ 215 (397)
.+..+|=.|++.|. ++..|++.|.+|+.+..+++.++.+.+.+... .++..+..|..+..--. .+....+ ..
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQ---QF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence 35688888887764 45666677999999999998877665554332 35667777876543211 1112222 12
Q ss_pred C-CcceEeecC
Q 015990 216 S-GFAKVVANI 225 (397)
Q Consensus 216 ~-~~d~Vv~Nl 225 (397)
+ ..|.+|.|.
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 3 688888885
No 315
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.22 E-value=4.9 Score=37.47 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=47.4
Q ss_pred EEEEEcCcc--cHHHHHHHHcCCcEEEEeCCHHHHHHHHH-HhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcce
Q 015990 144 IVLEIGPGT--GSLTNVLLNAGATVLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (397)
Q Consensus 144 ~VLEIG~G~--G~lt~~La~~~~~V~~vE~d~~~i~~a~~-~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (397)
+++=+|||. +.++..|.+.|..|++||.|++.++.... .. ....+++|+.+...- .++ ....+|.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~~~~L-------~~a-gi~~aD~ 69 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGDATDEDVL-------EEA-GIDDADA 69 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEecCCCHHHH-------Hhc-CCCcCCE
Confidence 466678874 34455666678999999999998877333 22 578999999876432 111 2345677
Q ss_pred EeecCCC
Q 015990 221 VVANIPF 227 (397)
Q Consensus 221 Vv~NlPy 227 (397)
+++-..-
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 7665544
No 316
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=83.16 E-value=7.4 Score=36.34 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=49.4
Q ss_pred EEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 144 IVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 144 ~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
+||=.|.+ |.++ ..+++.|++|+.++.+++.++.+.+.+...+++.++.+|+.+......+.+... ...+..|
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~--~~~g~id 78 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW--ELLGGID 78 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH--HhcCCCC
Confidence 46666754 3344 444556899999999988777666655444578889999877542211111111 1225678
Q ss_pred eEeecCC
Q 015990 220 KVVANIP 226 (397)
Q Consensus 220 ~Vv~NlP 226 (397)
.+|.|.-
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 8887753
No 317
>PRK07677 short chain dehydrogenase; Provisional
Probab=82.78 E-value=8.3 Score=35.78 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=48.4
Q ss_pred CEEEEEcCccc--H-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 143 DIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 143 ~~VLEIG~G~G--~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
+++|=.|++.| . ++..+++.|.+|++++.++...+.+.+.+... +++.++.+|..+...-..+.+.... ..+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE--KFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH--HhCCc
Confidence 56777787543 2 23445556889999999987666655554322 4788899998765322111111111 12457
Q ss_pred ceEeecC
Q 015990 219 AKVVANI 225 (397)
Q Consensus 219 d~Vv~Nl 225 (397)
|.+|.|.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 8888764
No 318
>PRK08589 short chain dehydrogenase; Validated
Probab=82.74 E-value=9.6 Score=36.02 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=48.2
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+++++|=.|++.| ++. .|++.|++|+.++.+++..+.+++.....+++.++.+|+.+..-...+.+...+ ..+
T Consensus 5 ~~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~g 81 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE--QFG 81 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH--HcC
Confidence 3567888886543 443 455568999999999544333333222224788899998775422212221111 224
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|.-
T Consensus 82 ~id~li~~Ag 91 (272)
T PRK08589 82 RVDVLFNNAG 91 (272)
T ss_pred CcCEEEECCC
Confidence 6788888753
No 319
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.22 E-value=9.8 Score=35.29 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhh-cC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR-KS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~-~~ 214 (397)
++++||=.|+ +|.++..+ ++.|.+|+.++.+++..+.+.+.+... .++.++.+|+.+..-. .++++.. ..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAV---AAAFARIDAE 85 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHH---HHHHHHHHHh
Confidence 4678888885 45555544 456899999999987666555544332 3688999998765321 1111111 11
Q ss_pred CCCcceEeecCC
Q 015990 215 SSGFAKVVANIP 226 (397)
Q Consensus 215 ~~~~d~Vv~NlP 226 (397)
.++.|.+|.|.-
T Consensus 86 ~~~id~vi~~ag 97 (256)
T PRK06124 86 HGRLDILVNNVG 97 (256)
T ss_pred cCCCCEEEECCC
Confidence 245788887754
No 320
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.11 E-value=8.4 Score=36.59 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=48.8
Q ss_pred CCCEEEEEcCcc----cH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~----G~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
+++.+|=.|++. |. ++..|++.|++|+.++.+++..+.+++.....+....+.+|+.+..--+.+.+...+ ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~--~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEK--KW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHH--Hh
Confidence 457888888754 33 355666779999999887654443333322223334678898876432222221111 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|--
T Consensus 84 g~iD~lVnnAG 94 (271)
T PRK06505 84 GKLDFVVHAIG 94 (271)
T ss_pred CCCCEEEECCc
Confidence 57888888753
No 321
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.88 E-value=6.3 Score=42.38 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=46.9
Q ss_pred CEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
++|+=+|+| ..+..++ +.+.+++.+|.|++.++.+++. +..++.||+.+.+.-+ + -..++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~-------~-agi~~A 465 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELLR-------A-AGAEKA 465 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHH-------h-cCCccC
Confidence 456666655 4444444 3578999999999999988752 4678999998875321 1 023456
Q ss_pred ceEeecCCC
Q 015990 219 AKVVANIPF 227 (397)
Q Consensus 219 d~Vv~NlPy 227 (397)
+.++...+-
T Consensus 466 ~~vv~~~~d 474 (601)
T PRK03659 466 EAIVITCNE 474 (601)
T ss_pred CEEEEEeCC
Confidence 777776664
No 322
>PTZ00357 methyltransferase; Provisional
Probab=81.85 E-value=2.7 Score=45.24 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=49.0
Q ss_pred EEEEEcCcccHHHHHHHHc----C--CcEEEEeCCHHHHHHHHHHh---ccC--------CceEEEEccccccchhhhhh
Q 015990 144 IVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERF---ASI--------DQLKVLQEDFVKCHIRSHML 206 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~----~--~~V~~vE~d~~~i~~a~~~~---~~~--------~~v~ii~gD~~~~~~~~~~~ 206 (397)
.|+=+|+|-|-|-....+. + .+|++||.++..+.....+. ... +.|+++..|+..+.....-.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999996555442 2 38999999966544433332 222 25899999999985431000
Q ss_pred hHHhhhcCCCCcceEeecC
Q 015990 207 SLFERRKSSSGFAKVVANI 225 (397)
Q Consensus 207 ~~~~~~~~~~~~d~Vv~Nl 225 (397)
.. ..-...++.|+||+-|
T Consensus 783 s~-~~P~~~gKaDIVVSEL 800 (1072)
T PTZ00357 783 SL-TLPADFGLCDLIVSEL 800 (1072)
T ss_pred cc-cccccccccceehHhh
Confidence 00 0000113688888765
No 323
>PRK07478 short chain dehydrogenase; Provisional
Probab=81.72 E-value=11 Score=34.87 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=50.5
Q ss_pred CCEEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhh-hHHhhhcCC
Q 015990 142 GDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS 215 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~-~~~~~~~~~ 215 (397)
++++|=.|++ |.++ ..|++.|.+|+.++.+++-.+.+.+.+... +++.++.+|+.+.+...... .+.+ ..
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 81 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE---RF 81 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---hc
Confidence 5678877765 3343 445556889999999887766665555433 37888899987764322111 1222 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|..
T Consensus 82 ~~id~li~~ag 92 (254)
T PRK07478 82 GGLDIAFNNAG 92 (254)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 324
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.58 E-value=3.2 Score=42.01 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=40.9
Q ss_pred HHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhc
Q 015990 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (397)
Q Consensus 134 ~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~ 184 (397)
.+.+++.++++||-|..|-......|.+..++|++||+|+.-...++=+..
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 456788999999999887766666677777899999999988877665543
No 325
>PRK08339 short chain dehydrogenase; Provisional
Probab=81.19 E-value=12 Score=35.33 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=51.8
Q ss_pred CCCEEEEEcCccc--H-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcc--CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G--~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~--~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++++|=.|++.| . ++..|++.|++|+.++.+++-.+.+.+.+.. ..++.++.+|+.+..-.+.+.+... ..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~---~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK---NI 83 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH---hh
Confidence 4667888887543 2 3445566799999999998776666555432 2378899999987643222222221 12
Q ss_pred CCcceEeecC
Q 015990 216 SGFAKVVANI 225 (397)
Q Consensus 216 ~~~d~Vv~Nl 225 (397)
+..|.+|.|.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4678888774
No 326
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=81.08 E-value=12 Score=34.83 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh-hhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~-~~~~~~~~~~~~ 215 (397)
.++++|=.|++ |.++ ..|+++|.+|+.++.++...+.+.+......++.++.+|+.+..... .+....+ ..
T Consensus 7 ~~k~vlVtGas-~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 82 (260)
T PRK12823 7 AGKVVVVTGAA-QGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVE---AF 82 (260)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH---Hc
Confidence 35678888864 3343 44555688999999986533333222222236788899987753211 1111111 22
Q ss_pred CCcceEeecC
Q 015990 216 SGFAKVVANI 225 (397)
Q Consensus 216 ~~~d~Vv~Nl 225 (397)
+..|.+|.|-
T Consensus 83 ~~id~lv~nA 92 (260)
T PRK12823 83 GRIDVLINNV 92 (260)
T ss_pred CCCeEEEECC
Confidence 4678888775
No 327
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=81.00 E-value=4.3 Score=42.00 Aligned_cols=101 Identities=16% Similarity=0.303 Sum_probs=68.2
Q ss_pred CCC-EEEEEcCcccHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHh-ccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 141 EGD-IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 141 ~~~-~VLEIG~G~G~lt~~La~~~~-~V~~vE~d~~~i~~a~~~~-~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
+.+ ++|.+|||.--++..+-+-|. .|+.+|+|+-.++...... ...+-.++...|+....+++..++..- ..+.
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVI---dkGt 123 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVI---DKGT 123 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEE---ecCc
Confidence 445 899999999999999988876 7999999999998877665 334578899999999887654333221 1244
Q ss_pred cceEeecCC--C------cCcHHHHHHhccCCCce
Q 015990 218 FAKVVANIP--F------NISTDVIKQLLPMGDIF 244 (397)
Q Consensus 218 ~d~Vv~NlP--y------~i~s~il~~L~~~g~~~ 244 (397)
.|....+-+ + +...++.+.+.+++..+
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 454444432 2 22234555666655543
No 328
>PRK07035 short chain dehydrogenase; Provisional
Probab=80.99 E-value=12 Score=34.66 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=50.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
.+++||=.|++.|. ++..|++.|.+|+.++.+++-.+.+.+.+... .++.++..|..+..-.+...+.... ..+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE--RHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence 34678888866442 23445556889999999877666555554332 3677888888776422211111111 124
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|..
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 5788886654
No 329
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=80.98 E-value=4.8 Score=34.17 Aligned_cols=76 Identities=13% Similarity=0.252 Sum_probs=41.6
Q ss_pred CCEEEEEcCcccH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcce
Q 015990 142 GDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (397)
Q Consensus 142 ~~~VLEIG~G~G~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~ 220 (397)
.++|+|+|-|.=. .+..|.+.|..|+++|+++. .+. ..+.++..|+.+.++.- ....|+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~------~g~~~v~DDif~P~l~i-----------Y~~a~l 73 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP------EGVNFVVDDIFNPNLEI-----------YEGADL 73 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--HHH-----------HTTEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc------cCcceeeecccCCCHHH-----------hcCCcE
Confidence 4499999998643 45666677999999999997 111 25778899998865431 134566
Q ss_pred Eee-cCCCcCcHHHHHHh
Q 015990 221 VVA-NIPFNISTDVIKQL 237 (397)
Q Consensus 221 Vv~-NlPy~i~s~il~~L 237 (397)
|.+ ++|-.+..+++.--
T Consensus 74 IYSiRPP~El~~~il~lA 91 (127)
T PF03686_consen 74 IYSIRPPPELQPPILELA 91 (127)
T ss_dssp EEEES--TTSHHHHHHHH
T ss_pred EEEeCCChHHhHHHHHHH
Confidence 654 68877777776543
No 330
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=80.94 E-value=12 Score=34.92 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=52.6
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhh-hhhhHHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~-~~~~~~~~~~~ 214 (397)
++.+||=.| |+|.++..+++ .|.+|+.++.+.+-.+.+...+... .++.++.+|+.+...-. .+..+.+ .
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~---~ 86 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLE---R 86 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH---H
Confidence 457888888 55666666554 5889999999987766666555433 36888999998754221 1111111 1
Q ss_pred CCCcceEeecCCC
Q 015990 215 SSGFAKVVANIPF 227 (397)
Q Consensus 215 ~~~~d~Vv~NlPy 227 (397)
.+..|.||.|...
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 2457888877543
No 331
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.89 E-value=9.6 Score=35.81 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=48.0
Q ss_pred CCCEEEEEcCcc----cH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~----G~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++.+|=.|++. |. ++..|++.|++|+..+.++...+.+++.....+...++..|+.+..--+.+.+...+ ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~--~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKE--KW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHH--Hc
Confidence 456788888854 32 345667779999988877543333333322223334567888776432222222211 23
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|++|.|..
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 56888888864
No 332
>PRK07063 short chain dehydrogenase; Provisional
Probab=80.86 E-value=12 Score=34.83 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhcc---CCceEEEEccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~---~~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
.+++||=.|++ |.++ ..|++.|++|+.++.+++..+.+.+.+.. ..++.++.+|+.+......+.+...+
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-- 82 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE-- 82 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH--
Confidence 35788888865 3444 44555689999999998877766655543 23788899998775422111111111
Q ss_pred CCCCcceEeecCC
Q 015990 214 SSSGFAKVVANIP 226 (397)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (397)
..+..|.+|.|--
T Consensus 83 ~~g~id~li~~ag 95 (260)
T PRK07063 83 AFGPLDVLVNNAG 95 (260)
T ss_pred HhCCCcEEEECCC
Confidence 2246788887743
No 333
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.80 E-value=12 Score=34.12 Aligned_cols=83 Identities=12% Similarity=0.206 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
++++||=.|++ |.++..++ +.|.+|++++.+++-.+.+.+.....++++++.+|..+..-.....+.... ..+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAK--VLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHH--HhC
Confidence 35689989975 44544444 458899999999887766655544445788899998875422211111110 113
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.++.|..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 4577776653
No 334
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.78 E-value=11 Score=35.57 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCCEEEEEcCcc----cH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~----G~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++++|=.|.|. |. ++..|++.|++|+.++.+.+..+.+++.....+.+.++..|+.+..--+.+.+...+ ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK--VW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh--hc
Confidence 356888888754 32 466677779999988887543344443333234566788898776432222222211 23
Q ss_pred CCcceEeecCCC
Q 015990 216 SGFAKVVANIPF 227 (397)
Q Consensus 216 ~~~d~Vv~NlPy 227 (397)
+..|.+|.|.-+
T Consensus 83 g~iD~linnAg~ 94 (262)
T PRK07984 83 PKFDGFVHSIGF 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 568999988643
No 335
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=80.74 E-value=1.8 Score=38.02 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=53.0
Q ss_pred HHHHHHHHHhc--CCCchHHHHHhhhc--CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH--hhcccCC
Q 015990 322 SFFSMVSSAFN--GKRKMLRKSLQHLC--TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLI--SYGSRQW 395 (397)
Q Consensus 322 ~f~~~v~~~F~--~rRK~l~n~L~~~~--~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~--~~~~~~~ 395 (397)
+|..+++.+-. ...|.+.-+|..++ .......++..+||+++.|.. +||.+|..+|.+.... .|+--.|
T Consensus 10 ~~~~mvrI~~~~l~~~K~v~~aLt~I~GIG~~~A~~I~~~lgi~~~~~~~-----~Lt~~qi~~l~~~i~~~~~~~iP~w 84 (154)
T PTZ00134 10 DFQHILRILNTNVDGKRKVPYALTAIKGIGRRFAYLVCKKAGIDVTKRAG-----ELTAEEIEKIVEIIANPLQFKIPDW 84 (154)
T ss_pred hhhhhhhccCccCCCCCEEEEeecccccccHHHHHHHHHHcCcCcCCCcc-----cCCHHHHHHHHHHHhccccCCCChh
Confidence 57777765432 44667777787765 555667899999999999999 9999999999998875 4765555
Q ss_pred C
Q 015990 396 F 396 (397)
Q Consensus 396 ~ 396 (397)
|
T Consensus 85 ~ 85 (154)
T PTZ00134 85 F 85 (154)
T ss_pred H
Confidence 4
No 336
>PRK07814 short chain dehydrogenase; Provisional
Probab=80.67 E-value=11 Score=35.23 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhh-HHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLS-LFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~-~~~~~~~ 214 (397)
++.+||=.|. +|.++..+ +++|.+|++++.+++-.+.+.+.+.. ..++.++.+|..+........+ ..+ .
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~ 84 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE---A 84 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---H
Confidence 4568888884 55565554 45688999999998766655554432 2368888999877543221111 111 1
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
.+..|.||.|.
T Consensus 85 ~~~id~vi~~A 95 (263)
T PRK07814 85 FGRLDIVVNNV 95 (263)
T ss_pred cCCCCEEEECC
Confidence 24678887664
No 337
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.66 E-value=12 Score=34.56 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=50.6
Q ss_pred CCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.+||=.| |+|.++..+++ +|.+|++++.+++-.+.+...+.. ..+++++.+|+.+...-....+.... ..+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVE--TFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence 45777666 46777766665 488999999998776655544432 24788999998765422111111111 124
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.||.|..
T Consensus 81 ~~d~vi~~a~ 90 (258)
T PRK12429 81 GVDILVNNAG 90 (258)
T ss_pred CCCEEEECCC
Confidence 5788887653
No 338
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.58 E-value=12 Score=34.65 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=50.8
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
++++||=.|+ +|.++.. |++.|++|+.++.+++-.+.+.+.+... .++.++.+|+.+..--..+.+.... ..
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~--~~ 82 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIA--AY 82 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--Hh
Confidence 3578888886 4445444 4456889999999987666555544332 3788999999875421111111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|.-
T Consensus 83 g~id~li~~ag 93 (253)
T PRK06172 83 GRLDYAFNNAG 93 (253)
T ss_pred CCCCEEEECCC
Confidence 46788887754
No 339
>PRK07576 short chain dehydrogenase; Provisional
Probab=80.47 E-value=10 Score=35.64 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhh-hhhhHHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~-~~~~~~~~~~~ 214 (397)
++.+||=.|. +|.++.. ++..|++|++++.+++-.+...+.+... .++.++.+|+.+..... .+.+..+ .
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~---~ 83 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD---E 83 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH---H
Confidence 4568888884 5555544 4456889999999877665554444322 36778889987653211 1111111 1
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
.+..|.+|.|.
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 24578888664
No 340
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.24 E-value=12 Score=34.41 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+.+||=.| |+|.++..++ ++|.+|+.++.++.-.+...+.+.. .+++.++..|..+..-...+.....+ ..
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVS--AF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--Hh
Confidence 356788888 5566665555 4688999999987665555444432 23677888998876422111111111 12
Q ss_pred CCcceEeecCCC
Q 015990 216 SGFAKVVANIPF 227 (397)
Q Consensus 216 ~~~d~Vv~NlPy 227 (397)
+..|.||.|-.+
T Consensus 82 ~~id~vi~~ag~ 93 (250)
T PRK07774 82 GGIDYLVNNAAI 93 (250)
T ss_pred CCCCEEEECCCC
Confidence 457888877553
No 341
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.17 E-value=13 Score=34.33 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccC--CceEEEEccccccchh---hhhhhHHh
Q 015990 140 QEGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR---SHMLSLFE 210 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~---~~~~~~~~ 210 (397)
.++++||=.| |+|.++..++ +.|.+|++++.+.+..+.+.+.+... .++.++.+|+...+.. .....+.+
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 4677899888 4566665544 45889999999987666555544332 3677888888643322 11111111
Q ss_pred hhcCCCCcceEeecC
Q 015990 211 RRKSSSGFAKVVANI 225 (397)
Q Consensus 211 ~~~~~~~~d~Vv~Nl 225 (397)
..+..|.||.|-
T Consensus 89 ---~~~~id~vi~~A 100 (247)
T PRK08945 89 ---QFGRLDGVLHNA 100 (247)
T ss_pred ---HhCCCCEEEECC
Confidence 124678888764
No 342
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.09 E-value=12 Score=34.18 Aligned_cols=82 Identities=11% Similarity=0.165 Sum_probs=49.4
Q ss_pred CCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.++|=.| |+|.++..++ ++|.+|+.++.++.-.+.....+... .++.++.+|+.+..-.....+... ...+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 83 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLK--NELG 83 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 46788888 4677766654 45889999999876555444333322 378889999876542111111111 1124
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.||.|..
T Consensus 84 ~id~vi~~ag 93 (239)
T PRK07666 84 SIDILINNAG 93 (239)
T ss_pred CccEEEEcCc
Confidence 5788887754
No 343
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=80.09 E-value=8.6 Score=41.01 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=53.0
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcc----------CCceEEEEcccc
Q 015990 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFV 197 (397)
Q Consensus 132 ~i~~~~~~~~~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~----------~~~v~ii~gD~~ 197 (397)
.+-+.++.+.+++||=.|+ +|.++..++ +.|.+|+++..+.+-.+.+.+.+.. ..+++++.+|+.
T Consensus 70 ~~~~~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 70 AIPKELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred ccccccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 3333455667888888885 466665554 4588999999988766554433211 135889999998
Q ss_pred ccchhhhhhhHHhhhcCCCCcceEeecCC
Q 015990 198 KCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
+.+. +.+. .+..|+||.|.-
T Consensus 149 D~es---I~~a------LggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQ---IGPA------LGNASVVICCIG 168 (576)
T ss_pred CHHH---HHHH------hcCCCEEEEccc
Confidence 7532 1111 135678877753
No 344
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S13 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S13 is known to be involved in binding fMet-tRNA and, hence, in the initiation of translation. It is a basic protein of 115 to 177 amino-acid residues that contains thee helices and a beta-hairpin in the core of the protein, forming a helix-two turns-helix (H2TH) motif, and a non-globular C-terminal extension. This family of ribosomal proteins is present in prokaryotes, eukaryotes and archaea [, ].; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBN_M 2QBB_M 3I1M_M 3OFP_M 3OFX_M 3OFO_M 1VS5_M 3OAQ_M 2QAL_M 3J18_M ....
Probab=80.09 E-value=5.7 Score=32.59 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=41.5
Q ss_pred CCchHHHHHhhhc--CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 015990 334 KRKMLRKSLQHLC--TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLI 388 (397)
Q Consensus 334 rRK~l~n~L~~~~--~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~ 388 (397)
..|.+..+|..++ .......++..+|++++.+.. +|+.++...|.+....
T Consensus 9 ~~k~i~~aLt~IyGIG~~~A~~Ic~~lgi~~~~~~~-----~Ls~~~i~~l~~~i~~ 60 (107)
T PF00416_consen 9 GNKPIYIALTKIYGIGRRKAKQICKKLGINPNKKVG-----DLSDEQIDKLRKIIEK 60 (107)
T ss_dssp TSSBHHHHHTTSTTBCHHHHHHHHHHTTS-SSSBTT-----TSTHHHHHHHHHHHHT
T ss_pred CCcchHhHHhhhhccCHHHHHHHHHHcCCChhhhcc-----cCCHHHHHHHHHHHHH
Confidence 4677888888775 566777899999999999999 9999999999887665
No 345
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.01 E-value=13 Score=34.06 Aligned_cols=83 Identities=8% Similarity=0.119 Sum_probs=50.0
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
+++++|=.|+ +|.++..+ ++.|.+|+.++.++.-.+.+.+.+.. ..++.++..|+.+....+...+.... ..
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAE--DF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence 3678888885 34454444 44588999999998766655554433 24788899998765322111111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.||.|..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 46788888754
No 346
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=79.93 E-value=2.9 Score=36.57 Aligned_cols=70 Identities=19% Similarity=0.113 Sum_probs=52.3
Q ss_pred HHHHHHHHHh--cCCCchHHHHHhhhc--CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH--hhcccCC
Q 015990 322 SFFSMVSSAF--NGKRKMLRKSLQHLC--TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLI--SYGSRQW 395 (397)
Q Consensus 322 ~f~~~v~~~F--~~rRK~l~n~L~~~~--~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~--~~~~~~~ 395 (397)
.|..+++.+- ....|.+.-+|..++ .......+++.+||+++.|+. +|+.++..+|.+.... .||--.|
T Consensus 5 ~~~~m~rI~~~~i~~~k~i~~aLt~IyGIG~~~a~~Ic~~lgi~~~~~~~-----~Lt~~qi~~l~~~i~~~~~~~iP~w 79 (149)
T PRK04053 5 EFKYIVRIAGTDLDGTKPVEYALTGIKGIGRRTARAIARKLGLDPNAKLG-----YLSDEEIEKIEEALEDPAEEGIPSW 79 (149)
T ss_pred hhhhhHhhcCccCCCCCEEeeeccccccccHHHHHHHHHHcCcCCCCccC-----cCCHHHHHHHHHHHHhhccccCchh
Confidence 4666665432 245667777887765 566667899999999999999 9999999999988754 3566666
Q ss_pred C
Q 015990 396 F 396 (397)
Q Consensus 396 ~ 396 (397)
|
T Consensus 80 ~ 80 (149)
T PRK04053 80 M 80 (149)
T ss_pred h
Confidence 5
No 347
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.86 E-value=13 Score=35.81 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=50.0
Q ss_pred CCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.+||=.|++ |.++.. |++.|.+|++++.+++..+.+.+.+.. .+++.++.+|+.+........+...+ ..+
T Consensus 40 ~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~--~~g 116 (293)
T PRK05866 40 GKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEK--RIG 116 (293)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--HcC
Confidence 4678888864 444444 445688999999998777666555432 23678889998875432222221111 124
Q ss_pred CcceEeecC
Q 015990 217 GFAKVVANI 225 (397)
Q Consensus 217 ~~d~Vv~Nl 225 (397)
..|.+|.|.
T Consensus 117 ~id~li~~A 125 (293)
T PRK05866 117 GVDILINNA 125 (293)
T ss_pred CCCEEEECC
Confidence 678888774
No 348
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.67 E-value=11 Score=35.48 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=48.8
Q ss_pred CCCEEEEEcC-cccHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGP-GTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~-G~G~lt~----~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
+++++|=.|+ |++.++. .|++.|++|+....+.+..+.+++.....+....+.+|+.+..--+.+.+...+ ..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGK--HW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH--Hh
Confidence 4568888896 3344444 444568899887766544444444433334455788998876432222222211 23
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|++|.|.-
T Consensus 83 g~iD~lVnnAG 93 (261)
T PRK08690 83 DGLDGLVHSIG 93 (261)
T ss_pred CCCcEEEECCc
Confidence 56899998854
No 349
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.40 E-value=5 Score=39.98 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=44.3
Q ss_pred cCCCHHHHH--HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHh
Q 015990 123 YMLNSEIND--QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERF 183 (397)
Q Consensus 123 fl~~~~i~~--~i~~~~~~~~~~~VLEIG~G~-G~lt~~La~~-~-~~V~~vE~d~~~i~~a~~~~ 183 (397)
.+.++--.. .........++++|+=+|||+ |.++..+++. | .+|+++|.+++.++.|++..
T Consensus 148 al~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 148 ALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred hhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 345544443 323344445556999999996 8888777776 4 58999999999999999865
No 350
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=79.22 E-value=1.6 Score=42.01 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh
Q 015990 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 130 ~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~ 203 (397)
+...++... .+..++|+|||.|-.+..= ....+++.|+...++..++.. +...+..+|+++.+..+
T Consensus 36 v~qfl~~~~--~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 36 VRQFLDSQP--TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFRE 101 (293)
T ss_pred HHHHHhccC--CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC----CCceeehhhhhcCCCCC
Confidence 334444333 3778999999999765321 355799999999988887654 22268889999998753
No 351
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=79.21 E-value=14 Score=34.71 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
+++++|=.|++. .++ ..|++.|.+|+.++.+++..+.+.+.+... .++.++.+|+.+......+.+.... ..
T Consensus 9 ~~k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~ 85 (278)
T PRK08277 9 KGKVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILE--DF 85 (278)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence 356788888643 343 444556889999999887666555554333 3688899998876422111111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|..
T Consensus 86 g~id~li~~ag 96 (278)
T PRK08277 86 GPCDILINGAG 96 (278)
T ss_pred CCCCEEEECCC
Confidence 46788887754
No 352
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=79.20 E-value=4.8 Score=34.80 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=37.8
Q ss_pred cEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhhhcCCCCcceEeecCCC
Q 015990 165 TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 165 ~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
+|+|+|+.+++++..++++... .++++++.+=..++. .+ ..+..|.++-||-|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~------~i----~~~~v~~~iFNLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDE------YI----PEGPVDAAIFNLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGG------T------S--EEEEEEEESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHh------hC----ccCCcCEEEEECCc
Confidence 6999999999999999998765 379999887666532 11 11378999999876
No 353
>PRK07062 short chain dehydrogenase; Provisional
Probab=79.16 E-value=14 Score=34.58 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcc-C--CceEEEEccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~~~i~~a~~~~~~-~--~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
.++++|=.|++. .++. .+++.|++|+.++.+++-.+.+.+.+.. . .++.++..|+.+..-...+.+...+
T Consensus 7 ~~k~~lItGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-- 83 (265)
T PRK07062 7 EGRVAVVTGGSS-GIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA-- 83 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH--
Confidence 467888888654 3444 4445688999999998766655444332 1 2677888998776432212111111
Q ss_pred CCCCcceEeecCC
Q 015990 214 SSSGFAKVVANIP 226 (397)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (397)
..+..|.+|.|.-
T Consensus 84 ~~g~id~li~~Ag 96 (265)
T PRK07062 84 RFGGVDMLVNNAG 96 (265)
T ss_pred hcCCCCEEEECCC
Confidence 2246788887754
No 354
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.01 E-value=3.4 Score=35.52 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=25.3
Q ss_pred EEcCccc--HHHHHHH--Hc--CCcEEEEeCCHHHHHHHHHH
Q 015990 147 EIGPGTG--SLTNVLL--NA--GATVLAIEKDQHMVGLVRER 182 (397)
Q Consensus 147 EIG~G~G--~lt~~La--~~--~~~V~~vE~d~~~i~~a~~~ 182 (397)
|||+..| ..+..+. .. +.+|+++|.++..++.++.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666554 22 56899999999999999998
No 355
>PRK07024 short chain dehydrogenase; Provisional
Probab=78.95 E-value=15 Score=34.19 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=48.6
Q ss_pred CEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh-hhhhHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~-~~~~~~~~~~~~~~ 217 (397)
.+||=.|+ +|.++.. |++.|.+|+.++.+++..+.+.+.+...+++.++.+|+.+..--. .+..+.+ ..+.
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~---~~g~ 78 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIA---AHGL 78 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHH---hCCC
Confidence 46777775 4555544 445688999999998877666555433237889999998754211 1111111 2245
Q ss_pred cceEeecC
Q 015990 218 FAKVVANI 225 (397)
Q Consensus 218 ~d~Vv~Nl 225 (397)
.|.+|.|.
T Consensus 79 id~lv~~a 86 (257)
T PRK07024 79 PDVVIANA 86 (257)
T ss_pred CCEEEECC
Confidence 78888774
No 356
>PRK05650 short chain dehydrogenase; Provisional
Probab=78.87 E-value=14 Score=34.65 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=47.3
Q ss_pred EEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
+||=.|+ +|.++..+ ++.|.+|+.++.+.+-.+.+...+.. ..++.++.+|+.+........+.... ..+..
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~--~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEE--KWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH--HcCCC
Confidence 5676674 44554444 45688999999988766655444433 24788899998765422111111111 12467
Q ss_pred ceEeecCC
Q 015990 219 AKVVANIP 226 (397)
Q Consensus 219 d~Vv~NlP 226 (397)
|.+|.|..
T Consensus 79 d~lI~~ag 86 (270)
T PRK05650 79 DVIVNNAG 86 (270)
T ss_pred CEEEECCC
Confidence 88887743
No 357
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=78.78 E-value=21 Score=32.73 Aligned_cols=94 Identities=24% Similarity=0.403 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcCcc-cHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 139 VQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 139 ~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.++++||-.|+|. |..+..+++. |.+|++++.+++..+.+++.- .-.++ |.........+. . ....
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g----~~~~~--~~~~~~~~~~~~--~---~~~~ 200 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG----ADHVI--DYKEEDLEEELR--L---TGGG 200 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC----Cceec--cCCcCCHHHHHH--H---hcCC
Confidence 37789999999985 6666666664 789999999998887775531 11122 111111111000 0 1235
Q ss_pred CcceEeecCCC-cCcHHHHHHhccCCCc
Q 015990 217 GFAKVVANIPF-NISTDVIKQLLPMGDI 243 (397)
Q Consensus 217 ~~d~Vv~NlPy-~i~s~il~~L~~~g~~ 243 (397)
.+|.++.+.+- ......+..+.+.|.+
T Consensus 201 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~ 228 (271)
T cd05188 201 GADVVIDAVGGPETLAQALRLLRPGGRI 228 (271)
T ss_pred CCCEEEECCCCHHHHHHHHHhcccCCEE
Confidence 68888877664 3444455555555543
No 358
>PRK06181 short chain dehydrogenase; Provisional
Probab=78.71 E-value=15 Score=34.18 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=47.0
Q ss_pred CEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
.+||=.| |+|.++..+ ++.|.+|++++.++.-.+.+.+.+... .++.++.+|+.+..--....+.... ..+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVA--RFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence 4577677 445565554 445889999999976665554444332 3788889998775422111111110 1235
Q ss_pred cceEeecC
Q 015990 218 FAKVVANI 225 (397)
Q Consensus 218 ~d~Vv~Nl 225 (397)
.|.||.|.
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 68887664
No 359
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=78.66 E-value=17 Score=33.34 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhh-hHHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~-~~~~~~~~ 214 (397)
.+.+||=.|+ +|.++..+ +++|.+|++++.++.-...+.+.+.. ..++.++.+|+.+...-.... .... .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~ 80 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVE---D 80 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---H
Confidence 3567887775 46665554 45688999999986655544444432 236889999987653211111 1111 1
Q ss_pred CCCcceEeecCCC
Q 015990 215 SSGFAKVVANIPF 227 (397)
Q Consensus 215 ~~~~d~Vv~NlPy 227 (397)
.+.+|.|+.+...
T Consensus 81 ~~~~d~vi~~ag~ 93 (251)
T PRK12826 81 FGRLDILVANAGI 93 (251)
T ss_pred hCCCCEEEECCCC
Confidence 2357888777543
No 360
>PRK08251 short chain dehydrogenase; Provisional
Probab=78.49 E-value=15 Score=33.73 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=49.7
Q ss_pred CCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcc---CCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~---~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
+++||=.| |+|.++..+++ .|.+|+.++.+++..+.+...+.. ..++.++.+|+.+...-....+.... .
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~ 78 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRD--E 78 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH--H
Confidence 35678777 46667665554 588999999998777665554432 23788899999876421111111111 2
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
.+..|.+|.|.
T Consensus 79 ~~~id~vi~~a 89 (248)
T PRK08251 79 LGGLDRVIVNA 89 (248)
T ss_pred cCCCCEEEECC
Confidence 24578888775
No 361
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.20 E-value=32 Score=35.13 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccc
Q 015990 127 SEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (397)
Q Consensus 127 ~~i~~~i~~~~~~--~~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~ 200 (397)
+.-++.+...+.. ....+|+=+|+ |.++..+++ .+.+|+.+|.|++.++.+++.. .++.++.||+.+..
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~~ 288 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---PNTLVLHGDGTDQE 288 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---CCCeEEECCCCCHH
Confidence 4455555554432 23467888887 455544444 4789999999999988887754 35778999997653
Q ss_pred hhhhhhhHHhhhcCCCCcceEeecCCC
Q 015990 201 IRSHMLSLFERRKSSSGFAKVVANIPF 227 (397)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~d~Vv~NlPy 227 (397)
.- .+ .....++.|++-.+-
T Consensus 289 ~L-------~~-~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 289 LL-------EE-EGIDEADAFIALTND 307 (453)
T ss_pred HH-------Hh-cCCccCCEEEECCCC
Confidence 21 00 022456677765553
No 362
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=78.20 E-value=16 Score=33.86 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+++||=.|++ |.++.. |++.|.+|+.++.+.+..+.+...+... .++.++..|+.+..-...+..... ...
T Consensus 10 ~~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~ 86 (255)
T PRK06113 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAL--SKL 86 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 36789999954 444444 4556889999998887776655444322 367888999887642211111111 122
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.++.|..
T Consensus 87 ~~~d~li~~ag 97 (255)
T PRK06113 87 GKVDILVNNAG 97 (255)
T ss_pred CCCCEEEECCC
Confidence 45788877643
No 363
>PLN02780 ketoreductase/ oxidoreductase
Probab=78.16 E-value=15 Score=36.04 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=40.7
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhcc-C--CceEEEEccccc
Q 015990 141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVK 198 (397)
Q Consensus 141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~-~--~~v~ii~gD~~~ 198 (397)
.+..+|=.|++.| .++..++++|.+|+.++.+++-++.+.+.+.. . .++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 3678998897555 24555666799999999999887766555432 1 256777788764
No 364
>PRK05872 short chain dehydrogenase; Provisional
Probab=78.15 E-value=17 Score=34.88 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
++++||=.|++ |.++.. +++.|++|+.++.+++.++.+.+.+.....+..+.+|+.+..-...+.+-+.+ ..+
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~g 84 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVE--RFG 84 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHH--HcC
Confidence 46788888854 444444 44568899999999887766655554323566667888765422111111111 225
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|.-
T Consensus 85 ~id~vI~nAG 94 (296)
T PRK05872 85 GIDVVVANAG 94 (296)
T ss_pred CCCEEEECCC
Confidence 6788888754
No 365
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=78.12 E-value=14 Score=33.96 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=48.0
Q ss_pred CEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
.+||=.| |+|.++..+++ +|.+|++++.+++-.+.+...+... .++.++.+|+.+..--....+...+ ....
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAA--EFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH--hcCC
Confidence 3566666 55667666654 5889999999887666655544322 3788999999875421111111111 1234
Q ss_pred cceEeecC
Q 015990 218 FAKVVANI 225 (397)
Q Consensus 218 ~d~Vv~Nl 225 (397)
.|.||.|.
T Consensus 79 ~d~vi~~a 86 (255)
T TIGR01963 79 LDILVNNA 86 (255)
T ss_pred CCEEEECC
Confidence 67777664
No 366
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=77.96 E-value=2.2 Score=35.61 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=38.9
Q ss_pred chHHHHHhhhc--CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHhh
Q 015990 336 KMLRKSLQHLC--TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLISY 390 (397)
Q Consensus 336 K~l~n~L~~~~--~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~~~ 390 (397)
|.+.-+|..++ .......+++++||+++.|.. +||.||...|-+.....|
T Consensus 13 K~v~iALt~IyGIG~~~a~~I~~~~gi~~~~r~~-----eLteeei~~ir~~i~~~~ 64 (121)
T COG0099 13 KRVVIALTYIYGIGRRRAKEICKKAGIDPDKRVG-----ELTEEEIERLRDAIQNKY 64 (121)
T ss_pred ceEeehhhhhccccHHHHHHHHHHcCCCHhHhhc-----cCCHHHHHHHHHHHHhcC
Confidence 44555566554 455667899999999999999 999999999988776433
No 367
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.90 E-value=14 Score=34.01 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=46.5
Q ss_pred CEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcc--CCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~--~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
++|+=.| |+|.++..++ +.|.+|++++.+++-.+...+.+.. .++++++.+|..+.... .+.++.. ..
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~~~--~~ 75 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASH---AAFLDSL--PA 75 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHH---HHHHHHH--hh
Confidence 3677778 4466655544 4588999999998765544433322 24789999999876421 1222211 12
Q ss_pred CcceEeecC
Q 015990 217 GFAKVVANI 225 (397)
Q Consensus 217 ~~d~Vv~Nl 225 (397)
.+|.++.|.
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 457888664
No 368
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.77 E-value=16 Score=33.93 Aligned_cols=80 Identities=9% Similarity=0.064 Sum_probs=49.5
Q ss_pred CEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhh-hHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~-~~~~~~~~~~~ 217 (397)
++||=.|++ |.++.. |++.|.+|+.++.+++-.+.+.+... ..++.++.+|+.+...-.... ..... ..++
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~--~~~~ 77 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAA--TGGR 77 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHH--cCCC
Confidence 357777754 454444 45568899999999887776655543 247899999997754221111 11110 1346
Q ss_pred cceEeecCC
Q 015990 218 FAKVVANIP 226 (397)
Q Consensus 218 ~d~Vv~NlP 226 (397)
.|.||.|.-
T Consensus 78 id~vi~~ag 86 (260)
T PRK08267 78 LDVLFNNAG 86 (260)
T ss_pred CCEEEECCC
Confidence 788887754
No 369
>PRK08643 acetoin reductase; Validated
Probab=77.71 E-value=17 Score=33.71 Aligned_cols=82 Identities=10% Similarity=0.129 Sum_probs=49.7
Q ss_pred CCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
++++|=.|+ +|.++..+ ++.|.+|+.++.+++..+.+...+... .++.++.+|+.+..-.....+...+ ..+
T Consensus 2 ~k~~lItGa-s~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 78 (256)
T PRK08643 2 SKVALVTGA-GQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVD--TFG 78 (256)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH--HcC
Confidence 356777774 44455544 446889999999987766665554432 3678889998876432211111111 124
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|-.
T Consensus 79 ~id~vi~~ag 88 (256)
T PRK08643 79 DLNVVVNNAG 88 (256)
T ss_pred CCCEEEECCC
Confidence 6788887754
No 370
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.68 E-value=12 Score=39.87 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=45.9
Q ss_pred CEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
++|+=+||| ..+..+++ .+.+++.||.|++.++.+++. +...++||+.+...-+ + -.-+..
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~L~-------~-a~i~~a 482 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEEIMQ-------L-AHLDCA 482 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHHHH-------h-cCcccc
Confidence 455656665 45444444 578999999999999888752 5789999998764211 1 022456
Q ss_pred ceEeecCCC
Q 015990 219 AKVVANIPF 227 (397)
Q Consensus 219 d~Vv~NlPy 227 (397)
|.++...+-
T Consensus 483 ~~viv~~~~ 491 (558)
T PRK10669 483 RWLLLTIPN 491 (558)
T ss_pred CEEEEEcCC
Confidence 767665554
No 371
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.66 E-value=14 Score=35.26 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=47.9
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhhHHhhhcC
Q 015990 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
.++.||=.|++ .|. ++..|++.|++|+.++.+++..+.+++.....+ . ..+..|+.+..--+.+.+...+ .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~--~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKK--D 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHH--H
Confidence 35788888974 443 244555678999999988643333333222212 3 5678898876532222222211 2
Q ss_pred CCCcceEeecCC
Q 015990 215 SSGFAKVVANIP 226 (397)
Q Consensus 215 ~~~~d~Vv~NlP 226 (397)
.+..|.+|.|--
T Consensus 81 ~g~iDilVnnAG 92 (274)
T PRK08415 81 LGKIDFIVHSVA 92 (274)
T ss_pred cCCCCEEEECCc
Confidence 357889888854
No 372
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.59 E-value=18 Score=33.20 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
++.+||=.|+ +|.++..+++ +|.+|++++.+++-.+...+.+.. ..++.++.+|+.+......+.+.... ..
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAA--AL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH--Hc
Confidence 4577887774 5666665554 588999999988766655554432 23789999999875422111111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.|+.|.-
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46788877643
No 373
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=77.57 E-value=18 Score=35.10 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+++||=.|+. |.++. .|++.|.+|+.++.+.+-.+.+.+.+.. .+++.++..|+.+..-...+.+.+.. ..
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~ 81 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRA--LG 81 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHH--hC
Confidence 45678888854 44444 4445688999999988766655554432 23788899998776432222211111 22
Q ss_pred CCcceEeecC
Q 015990 216 SGFAKVVANI 225 (397)
Q Consensus 216 ~~~d~Vv~Nl 225 (397)
+..|.+|.|-
T Consensus 82 ~~iD~li~nA 91 (322)
T PRK07453 82 KPLDALVCNA 91 (322)
T ss_pred CCccEEEECC
Confidence 4578888774
No 374
>PRK09242 tropinone reductase; Provisional
Probab=77.54 E-value=17 Score=33.69 Aligned_cols=84 Identities=23% Similarity=0.314 Sum_probs=51.3
Q ss_pred CCCEEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhccC---CceEEEEccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~~---~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
.++++|=.|++. .++ ..+++.|.+|+.++.+++-.+...+.+... .++.++.+|+.+......+.+....
T Consensus 8 ~~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-- 84 (257)
T PRK09242 8 DGQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED-- 84 (257)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH--
Confidence 467888888743 343 344456889999999987776665554322 3788889998765422111111111
Q ss_pred CCCCcceEeecCCC
Q 015990 214 SSSGFAKVVANIPF 227 (397)
Q Consensus 214 ~~~~~d~Vv~NlPy 227 (397)
..+..|.+|.|.-+
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 22467888877644
No 375
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=77.49 E-value=5 Score=38.40 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
+.++....|+|+..|.-|-.|.+++-.|++||.-+ |. +.+...|.++-...|..++... ....
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma----~sL~dtg~v~h~r~DGfk~~P~------------r~~i 271 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MA----QSLMDTGQVTHLREDGFKFRPT------------RSNI 271 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcceEEEEeccch-hh----hhhhcccceeeeeccCcccccC------------CCCC
Confidence 45788999999999999999999999999999644 32 3334457899999998888541 2456
Q ss_pred ceEeecCC
Q 015990 219 AKVVANIP 226 (397)
Q Consensus 219 d~Vv~NlP 226 (397)
|..|+++-
T Consensus 272 dWmVCDmV 279 (358)
T COG2933 272 DWMVCDMV 279 (358)
T ss_pred ceEEeehh
Confidence 78888763
No 376
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=77.41 E-value=5.6 Score=40.01 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=50.2
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHhcc---CCceEEEEccccccchhh
Q 015990 138 AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 138 ~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~~~---~~~v~ii~gD~~~~~~~~ 203 (397)
...++..++|+|||.|.....++.. +++++|++.++--+..+...... ..+..++.+|+.+.++++
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED 176 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc
Confidence 3456778999999999999999986 57999999998877766654332 123445888998887653
No 377
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.06 E-value=18 Score=33.88 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=48.9
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchh-hhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~-~~~~~~~~~~~~~ 215 (397)
.++++|=.|++ |.++. .|++.|.+|+.++.+++-.+.+.+.+ ..++.++.+|+.+..-. ..+....+ ..
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 78 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVA---RF 78 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHH---Hh
Confidence 35688888854 44444 44556889999999987555444433 23688899999875422 11111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|..
T Consensus 79 g~id~lv~~ag 89 (261)
T PRK08265 79 GRVDILVNLAC 89 (261)
T ss_pred CCCCEEEECCC
Confidence 46788887754
No 378
>PRK06720 hypothetical protein; Provisional
Probab=76.99 E-value=23 Score=31.30 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhh-hHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-SLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~-~~~~~~~~~ 215 (397)
++..+|=.|.|.|. ++..+++.|.+|+.++.+.+..+.+.+.+.. .+.+.++..|..+...-..+. ...+ ..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~---~~ 91 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLN---AF 91 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence 45678888865432 3445556789999999988766555444432 235677888887653211111 1122 22
Q ss_pred CCcceEeecCCC
Q 015990 216 SGFAKVVANIPF 227 (397)
Q Consensus 216 ~~~d~Vv~NlPy 227 (397)
+..|.+|.|-..
T Consensus 92 G~iDilVnnAG~ 103 (169)
T PRK06720 92 SRIDMLFQNAGL 103 (169)
T ss_pred CCCCEEEECCCc
Confidence 567889988553
No 379
>PRK06139 short chain dehydrogenase; Provisional
Probab=76.66 E-value=16 Score=36.01 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+++||=.|++ |.++ ..+++.|++|+.++.+++..+.+.+.+... .++.++..|+.+..--..+.+...+ ..
T Consensus 6 ~~k~vlITGAs-~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~--~~ 82 (330)
T PRK06139 6 HGAVVVITGAS-SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS--FG 82 (330)
T ss_pred CCCEEEEcCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH--hc
Confidence 45678888864 3333 345556899999999988777666655433 3677888898765422212111111 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|--
T Consensus 83 g~iD~lVnnAG 93 (330)
T PRK06139 83 GRIDVWVNNVG 93 (330)
T ss_pred CCCCEEEECCC
Confidence 56788888753
No 380
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.59 E-value=18 Score=35.06 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=50.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhcc---CCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~---~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
.++++|=.|++.|. ++..|++.|++|+.+..+++-.+.+.+.+.. ..++.++..|+.+..-...+.+.+.+ .
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~--~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA--E 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH--h
Confidence 45788888865432 2344455689999999987766555444322 13688899999876533222222221 2
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
.+..|.+|.|.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 35678888774
No 381
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=76.54 E-value=16 Score=33.86 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccH--HHHHHHH--c--CCcEEEEeCCHHHHHHHHHHhccCC---ceEEEEccc
Q 015990 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGS--LTNVLLN--A--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (397)
Q Consensus 126 ~~~i~~~i~~~~~~~~~~~VLEIG~G~G~--lt~~La~--~--~~~V~~vE~d~~~i~~a~~~~~~~~---~v~ii~gD~ 196 (397)
.|.+.+.|...+.-.....++|+.|+.|. .|..|+- + |+++++|-.|+.-....++.+...+ -++|+.||.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 56788888877766667789999776543 3444443 2 8899999999888777777765433 468888885
Q ss_pred c
Q 015990 197 V 197 (397)
Q Consensus 197 ~ 197 (397)
.
T Consensus 106 ~ 106 (218)
T PF07279_consen 106 P 106 (218)
T ss_pred H
Confidence 4
No 382
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=76.43 E-value=9.3 Score=35.51 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=41.3
Q ss_pred CEEEEEcCcccHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcceE
Q 015990 143 DIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~-~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d~V 221 (397)
-++|||||=+..... ...+ ..|+.||+++. .-.+.+.|+++.+++.. ..+.||+|
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns~-------------~~~I~qqDFm~rplp~~---------~~e~FdvI 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ-------------HPGILQQDFMERPLPKN---------ESEKFDVI 108 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCCC-------------CCCceeeccccCCCCCC---------cccceeEE
Confidence 489999985443222 2222 36999998751 23578999999876421 34689999
Q ss_pred eecCCCc
Q 015990 222 VANIPFN 228 (397)
Q Consensus 222 v~NlPy~ 228 (397)
+..|-.+
T Consensus 109 s~SLVLN 115 (219)
T PF11968_consen 109 SLSLVLN 115 (219)
T ss_pred EEEEEEe
Confidence 8877654
No 383
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.19 E-value=20 Score=33.53 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=53.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC-ceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~-~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
.++++|=.|++.|. ++..|++.|.+|+.++.+++-.+.+.+.+...+ ++.++.+|+.+..-...+.+...+ ..+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEK--EVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--hCC
Confidence 45678888876432 345566678999999999877766665554333 688899998766432222221111 224
Q ss_pred CcceEeecCCC
Q 015990 217 GFAKVVANIPF 227 (397)
Q Consensus 217 ~~d~Vv~NlPy 227 (397)
..|.+|.|..+
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 67888877643
No 384
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=76.07 E-value=20 Score=33.45 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
++++||=.|++ |.++. .|++.|++|+.++.+++.++.+.+... .++.++.+|+.+......+.+... ...+
T Consensus 5 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g 79 (263)
T PRK06200 5 HGQVALITGGG-SGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG--DHVLVVEGDVTSYADNQRAVDQTV--DAFG 79 (263)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHH--HhcC
Confidence 45688888864 33444 455568899999999877766555442 367888999887643222222111 1235
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|..
T Consensus 80 ~id~li~~ag 89 (263)
T PRK06200 80 KLDCFVGNAG 89 (263)
T ss_pred CCCEEEECCC
Confidence 6788888754
No 385
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=75.97 E-value=3.3 Score=34.99 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=39.8
Q ss_pred CchHHHHHhhhc--CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHhh
Q 015990 335 RKMLRKSLQHLC--TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLISY 390 (397)
Q Consensus 335 RK~l~n~L~~~~--~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~~~ 390 (397)
.|.+.-+|..++ .......++..+||+++.|.. +|+.++...|.+.....|
T Consensus 12 ~k~v~~aLt~i~GIG~~~A~~ic~~lgi~~~~~~~-----~Lt~~qi~~l~~~i~~~~ 64 (122)
T CHL00137 12 NKRIEYALTYIYGIGLTSAKEILEKANIDPDIRTK-----DLTDEQISALREIIEENY 64 (122)
T ss_pred CCEeeeeecccccccHHHHHHHHHHcCcCcCcCcc-----cCCHHHHHHHHHHHHHhC
Confidence 345556666554 455667889999999999999 999999999998876555
No 386
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=75.81 E-value=20 Score=33.25 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=49.3
Q ss_pred CCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
+++||=.| |+|.++..++ ++|.+|+.++.+.+..+.+.+... .++.++.+|+.+..-...+.+...+ ..+.
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~ 80 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--PAAIAVSLDVTRQDSIDRIVAAAVE--RFGG 80 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence 46788777 4555655554 468899999999887766555442 3688889998765432222221111 1245
Q ss_pred cceEeecC
Q 015990 218 FAKVVANI 225 (397)
Q Consensus 218 ~d~Vv~Nl 225 (397)
.|.+|.|.
T Consensus 81 id~li~~a 88 (257)
T PRK07067 81 IDILFNNA 88 (257)
T ss_pred CCEEEECC
Confidence 78887664
No 387
>PRK05876 short chain dehydrogenase; Provisional
Probab=75.68 E-value=20 Score=33.95 Aligned_cols=83 Identities=13% Similarity=0.040 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+++||=.|++ |.++.. |++.|.+|+.++.+++-++.+.+.+... .++.++..|+.+..--..+.+...+ ..
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~ 81 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFR--LL 81 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH--Hc
Confidence 45678878865 445544 4456889999999987666555544332 3688889998876422111111111 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|-.
T Consensus 82 g~id~li~nAg 92 (275)
T PRK05876 82 GHVDVVFSNAG 92 (275)
T ss_pred CCCCEEEECCC
Confidence 45788887753
No 388
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=75.48 E-value=8.8 Score=40.57 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHhcCCCchHHHHHhhhc---CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Q 015990 319 STKSFFSMVSSAFNGKRKMLRKSLQHLC---TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLI 388 (397)
Q Consensus 319 ~~~~f~~~v~~~F~~rRK~l~n~L~~~~---~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~ 388 (397)
+...+.++++ ..++++|..-|...| +....+++++.+|++++.+|. +|+.++..+|.++|..
T Consensus 242 ~~~~l~~m~~---~t~~~~l~~fL~~~f~~v~~~~a~~~~~~~~~~~~~~~~-----~l~~~~~~~l~~~~~~ 306 (535)
T PRK04184 242 DLGTLKRMAA---RTKRRTLKEFLVEEFSRVGDKTADEILEKAGLDPNKKPK-----ELTREELERLVEAFKK 306 (535)
T ss_pred CHHHHHHHHH---hcccCCHHHHHHHhhcccCHHHHHHHHHHcCCCCCCChh-----hCCHHHHHHHHHHHHh
Confidence 3344545544 456677887776654 677788999999999988888 9999999999999875
No 389
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=75.40 E-value=8.1 Score=38.72 Aligned_cols=48 Identities=29% Similarity=0.403 Sum_probs=40.0
Q ss_pred HHhcCCCCCEEEEEcCcc-cHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHH
Q 015990 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER 182 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~~vE~d~~~i~~a~~~ 182 (397)
....+.++.+||..|||. |.++..+++. +. +|++++.+++..+.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 445677889999999988 8888888886 65 599999999999998875
No 390
>PRK07890 short chain dehydrogenase; Provisional
Probab=75.32 E-value=21 Score=32.92 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=49.7
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhh-hHHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~-~~~~~~~~ 214 (397)
.+.+||=.|+ +|.++.. |+++|.+|+.++.++.-.+.+.+.+... .++.++..|+.+........ ...+ .
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~ 79 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE---R 79 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH---H
Confidence 3567887775 4455544 4456889999999987666655554322 36888999987653221111 1111 1
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
.+..|.||.|-
T Consensus 80 ~g~~d~vi~~a 90 (258)
T PRK07890 80 FGRVDALVNNA 90 (258)
T ss_pred cCCccEEEECC
Confidence 24678888775
No 391
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=75.23 E-value=22 Score=32.95 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++++|=.|.+ |.++..+ ++.|.+|+.++.+++..+.+.+.+... .++.++.+|+.+...-..+.+... ...
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 84 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIE--KDI 84 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH--Hhc
Confidence 45678888844 4454444 446889999999977666555544332 367788899877642211111111 122
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|..
T Consensus 85 ~~id~vi~~ag 95 (254)
T PRK08085 85 GPIDVLINNAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 46788888764
No 392
>PRK06138 short chain dehydrogenase; Provisional
Probab=75.21 E-value=24 Score=32.42 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhh-hHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~-~~~~~~~~~ 215 (397)
+++++|=.|+. |.++.. |++.|++|+++..+.+..+...+......++.++.+|+.+........ .+.+ ..
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~---~~ 79 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAA---RW 79 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence 35678888873 445444 445688999999988766555554432346889999988754321111 1111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.|+.|..
T Consensus 80 ~~id~vi~~ag 90 (252)
T PRK06138 80 GRLDVLVNNAG 90 (252)
T ss_pred CCCCEEEECCC
Confidence 46788887654
No 393
>TIGR03629 arch_S13P archaeal ribosomal protein S13P. This model describes exclusively the archaeal ribosomal protein S13P. It excludes the homologous eukaryotic 40S ribosomal protein S18 and bacterial 30S ribosomal protein S13.
Probab=75.10 E-value=2.3 Score=36.97 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=43.2
Q ss_pred CchHHHHHhhhc--CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH-hhcccCCC
Q 015990 335 RKMLRKSLQHLC--TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLI-SYGSRQWF 396 (397)
Q Consensus 335 RK~l~n~L~~~~--~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~-~~~~~~~~ 396 (397)
.|.+.-+|..++ .......++..+||+++.|+. +||.++...|.+.... .||--.||
T Consensus 16 ~k~v~~aLt~I~GIG~~~a~~I~~~lgi~~~~~~~-----~Lt~~qi~~l~~~i~~~~~~iP~w~ 75 (144)
T TIGR03629 16 NKPVEYALTGIKGIGRRFARAIARKLGVDPNAKLG-----YLDDEEIEKLEEAVENYEYGIPSWL 75 (144)
T ss_pred CCEEEEeecceeccCHHHHHHHHHHcCcCCCCCcc-----cCCHHHHHHHHHHHHhccccCCHHH
Confidence 344555565554 455567889999999999999 9999999999987754 46666665
No 394
>PRK06196 oxidoreductase; Provisional
Probab=75.04 E-value=18 Score=35.04 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=49.7
Q ss_pred CCCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
.+.+||=.|++ |.++..++ +.|.+|++++.+++..+.+.+.+ .++.++.+|+.+..--..+.+.... ..+
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~--~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLD--SGR 98 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHh--cCC
Confidence 45688888854 55555444 46889999999987665554443 2478889998876432222211111 224
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|..
T Consensus 99 ~iD~li~nAg 108 (315)
T PRK06196 99 RIDILINNAG 108 (315)
T ss_pred CCCEEEECCC
Confidence 6788888754
No 395
>PRK07791 short chain dehydrogenase; Provisional
Probab=74.94 E-value=21 Score=34.13 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=48.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCcEEEEeCCH---------HHHHHHHHHhcc-CCceEEEEccccccchhhhhhh
Q 015990 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ---------HMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLS 207 (397)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~~vE~d~---------~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~ 207 (397)
+++++|=.|++.|. ++..+++.|++|+.++.+. +..+.+.+.+.. ..++.++..|+.+..-...+.+
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD 84 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 46788888876542 2334555688999888764 333333333332 2367888899887643221221
Q ss_pred HHhhhcCCCCcceEeecCC
Q 015990 208 LFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlP 226 (397)
...+ ..+..|.+|.|.-
T Consensus 85 ~~~~--~~g~id~lv~nAG 101 (286)
T PRK07791 85 AAVE--TFGGLDVLVNNAG 101 (286)
T ss_pred HHHH--hcCCCCEEEECCC
Confidence 1111 2356788888753
No 396
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.72 E-value=22 Score=33.05 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+++||=.|++.| ++. .|++.|++|+.++.++. .+.+.+.+.. ..++.++.+|+.+......+.+...+ ..
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~--~~ 89 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHGTN-WDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE--EF 89 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence 4678888887544 433 44556899999988743 3333333332 24788999998876432212211111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|..
T Consensus 90 g~id~li~~ag 100 (258)
T PRK06935 90 GKIDILVNNAG 100 (258)
T ss_pred CCCCEEEECCC
Confidence 45788887753
No 397
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=74.72 E-value=9.8 Score=38.46 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=54.9
Q ss_pred CCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCC----ceEEEEccccccchhhhhhhHHhhhcC
Q 015990 142 GDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~----~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
+-+|||.=+|+|.=+...+.. ..+|++-|+|+++++..++|++.++ .+++.+.|+..+-.. .
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~-----------~ 118 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS-----------R 118 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH-----------S
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh-----------c
Confidence 458999999999999888876 2489999999999999999987653 488889998775310 2
Q ss_pred CCCcceEeecCCCcCcHHHHH
Q 015990 215 SSGFAKVVANIPFNISTDVIK 235 (397)
Q Consensus 215 ~~~~d~Vv~NlPy~i~s~il~ 235 (397)
...||+|=-| ||.-+++.+.
T Consensus 119 ~~~fD~IDlD-PfGSp~pfld 138 (377)
T PF02005_consen 119 QERFDVIDLD-PFGSPAPFLD 138 (377)
T ss_dssp TT-EEEEEE---SS--HHHHH
T ss_pred cccCCEEEeC-CCCCccHhHH
Confidence 3567765443 6665555543
No 398
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.15 E-value=11 Score=31.55 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=37.8
Q ss_pred CEEEEEcCccc-HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccch
Q 015990 143 DIVLEIGPGTG-SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201 (397)
Q Consensus 143 ~~VLEIG~G~G-~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~ 201 (397)
.+|+|+|-|-= ..+..|+++|..|+++|+++. .+. ..+.++..|+.+...
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~------~g~~~v~DDitnP~~ 65 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP------EGLRFVVDDITNPNI 65 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc------ccceEEEccCCCccH
Confidence 38999987643 236778888999999999987 111 257899999988764
No 399
>PRK05717 oxidoreductase; Validated
Probab=74.00 E-value=21 Score=33.06 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=48.5
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhh-hhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~-~~~~~~~~~~~ 215 (397)
.+++||=.|. +|.++.. |++.|.+|+.++.++.-.+...+.. ..++.++.+|+.+...... +..+.+ ..
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 82 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL--GENAWFIAMDVADEAQVAAGVAEVLG---QF 82 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence 4678888885 3555544 4456889999998876444433332 2368889999987642211 111222 12
Q ss_pred CCcceEeecCCC
Q 015990 216 SGFAKVVANIPF 227 (397)
Q Consensus 216 ~~~d~Vv~NlPy 227 (397)
+..|.+|.|..+
T Consensus 83 g~id~li~~ag~ 94 (255)
T PRK05717 83 GRLDALVCNAAI 94 (255)
T ss_pred CCCCEEEECCCc
Confidence 467888877543
No 400
>PRK07109 short chain dehydrogenase; Provisional
Probab=73.95 E-value=22 Score=34.93 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=51.3
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+.+||=.|++ |.++.. |++.|.+|+.++.+++.++.+.+.+... .++.++.+|+.+....+...+...+ ..
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~--~~ 83 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEE--EL 83 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH--HC
Confidence 45678888853 444444 4556889999999988776665555432 3788899998876432222111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|--
T Consensus 84 g~iD~lInnAg 94 (334)
T PRK07109 84 GPIDTWVNNAM 94 (334)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 401
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.93 E-value=19 Score=33.61 Aligned_cols=83 Identities=12% Similarity=0.190 Sum_probs=49.7
Q ss_pred CCCEEEEEcCc----ccHH-HHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPG----TGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G----~G~l-t~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++++|=.|.+ .|.- +..|++.|.+|+.++.+++..+.+++... .++.++..|+.+..--+.+.+...+ ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~--~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVD--EEDLLVECDVASDESIERAFATIKE--RV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHHHHH--Hh
Confidence 46788888865 3432 44555678999999888654444433321 3678889999775432222222211 22
Q ss_pred CCcceEeecCCC
Q 015990 216 SGFAKVVANIPF 227 (397)
Q Consensus 216 ~~~d~Vv~NlPy 227 (397)
+..|.+|.|.-+
T Consensus 82 g~iD~lv~nAg~ 93 (252)
T PRK06079 82 GKIDGIVHAIAY 93 (252)
T ss_pred CCCCEEEEcccc
Confidence 568999888543
No 402
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.90 E-value=11 Score=38.60 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHhcC-CCCCEEEEEcCcc-cHHHHHHHH-cCCcEEEEeCCHHHHHHHHH
Q 015990 126 NSEINDQLAAAAAV-QEGDIVLEIGPGT-GSLTNVLLN-AGATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 126 ~~~i~~~i~~~~~~-~~~~~VLEIG~G~-G~lt~~La~-~~~~V~~vE~d~~~i~~a~~ 181 (397)
-..+.+.++...++ .+|++|+=+|+|. |......++ .|++|+.+|.|+...+.|+.
T Consensus 185 g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 185 RESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred chhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 34566777777654 4789999999996 555555554 48899999999987777665
No 403
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=73.84 E-value=1.8 Score=35.44 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.1
Q ss_pred CcceEeecCCCcCcH
Q 015990 217 GFAKVVANIPFNIST 231 (397)
Q Consensus 217 ~~d~Vv~NlPy~i~s 231 (397)
.||+||+||||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 589999999995443
No 404
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=73.70 E-value=10 Score=38.52 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=48.9
Q ss_pred HHHHHHHHHHh-cCCCchHHHHHhhhcCHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Q 015990 321 KSFFSMVSSAF-NGKRKMLRKSLQHLCTSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNL 387 (397)
Q Consensus 321 ~~f~~~v~~~F-~~rRK~l~n~L~~~~~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~ 387 (397)
+.+...+...+ ..++|++++.|..++++..+..+++.+||+++.+.. +|+.++...|++...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~lk 330 (400)
T TIGR00275 268 EELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAA-----QLSKKEIKKLVQLLK 330 (400)
T ss_pred HHHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChH-----HCCHHHHHHHHHHHh
Confidence 34444444333 456789999999999988889999999999988877 899999999987654
No 405
>PRK08628 short chain dehydrogenase; Provisional
Probab=73.52 E-value=26 Score=32.49 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=48.6
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh-hhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~-~~~~~~~~~~~~ 215 (397)
++.++|=.|. +|.++..+ +++|.+|+.+..++...+..++......++.++..|+.+..-.. .+..+.+ ..
T Consensus 6 ~~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 81 (258)
T PRK08628 6 KDKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVA---KF 81 (258)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---hc
Confidence 3567888885 45455444 45688999998887665443332222347889999987754211 1111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.||.|..
T Consensus 82 ~~id~vi~~ag 92 (258)
T PRK08628 82 GRIDGLVNNAG 92 (258)
T ss_pred CCCCEEEECCc
Confidence 46788887754
No 406
>PRK08303 short chain dehydrogenase; Provisional
Probab=73.51 E-value=19 Score=34.95 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=48.2
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCH----------HHHHHHHHHhccC-CceEEEEccccccchhhhh
Q 015990 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQ----------HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHM 205 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~----------~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~ 205 (397)
.++++|=.|++.| ++. .|++.|++|+.++.+. +-++.+.+.+... .++.++.+|+.+..-.+.+
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 4678999997554 443 4445688999998863 2333333333332 3677889998876432222
Q ss_pred hhHHhhhcCCCCcceEeecC
Q 015990 206 LSLFERRKSSSGFAKVVANI 225 (397)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~Nl 225 (397)
.+...+ ..+..|.+|.|.
T Consensus 86 ~~~~~~--~~g~iDilVnnA 103 (305)
T PRK08303 86 VERIDR--EQGRLDILVNDI 103 (305)
T ss_pred HHHHHH--HcCCccEEEECC
Confidence 222111 225678888886
No 407
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=73.41 E-value=2.4 Score=43.82 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=43.6
Q ss_pred CCEEEEEcCcccHHHHHHHHc-C-CcEEEEeCCHHHHHHHHHHhccC--CceEEEEcccccc
Q 015990 142 GDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC 199 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~-~-~~V~~vE~d~~~i~~a~~~~~~~--~~v~ii~gD~~~~ 199 (397)
+..+|=+|.|.|.++..+-.. . ..+++||+|+.+++.|..++.-. .+..+...|.++.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~ 357 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDF 357 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHH
Confidence 456888999999998877654 3 68999999999999999987532 1345555565554
No 408
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.40 E-value=20 Score=33.95 Aligned_cols=84 Identities=15% Similarity=0.062 Sum_probs=48.0
Q ss_pred CCCEEEEEcCc----ccHH-HHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPG----TGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G----~G~l-t~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++.+|=.|.+ .|.- +..|++.|++|+.+..++...+.+++.....+....+..|+.+..-.+.+.+...+ ..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEK--KW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHH--hc
Confidence 45688888974 4433 44555678999888766443444433332224455688898775432222222211 23
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|.-
T Consensus 87 g~iD~lv~nAG 97 (272)
T PRK08159 87 GKLDFVVHAIG 97 (272)
T ss_pred CCCcEEEECCc
Confidence 56899998853
No 409
>PRK07831 short chain dehydrogenase; Provisional
Probab=73.33 E-value=26 Score=32.62 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=50.8
Q ss_pred CCCEEEEEcC-c--ccHH-HHHHHHcCCcEEEEeCCHHHHHHHHHHhcc-C--CceEEEEccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGP-G--TGSL-TNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~-G--~G~l-t~~La~~~~~V~~vE~d~~~i~~a~~~~~~-~--~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
+++++|=.|. | .|.. +..+++.|.+|+.++.+++-++.+.+.+.. . .++.++.+|+.+....+...+....
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-- 93 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE-- 93 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH--
Confidence 4577888885 3 4443 445566788999999988766665554432 1 3688899998775322111111111
Q ss_pred CCCCcceEeecCC
Q 015990 214 SSSGFAKVVANIP 226 (397)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (397)
..+..|.+|.|.-
T Consensus 94 ~~g~id~li~~ag 106 (262)
T PRK07831 94 RLGRLDVLVNNAG 106 (262)
T ss_pred HcCCCCEEEECCC
Confidence 1246788887754
No 410
>PRK06197 short chain dehydrogenase; Provisional
Probab=73.29 E-value=22 Score=34.14 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcc---CCceEEEEccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~---~~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
.+++||=.|+ +|.++..+ +++|.+|+.+..+++..+.+.+.+.. ..++.++.+|+.+......+.+.+.+
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~-- 91 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA-- 91 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh--
Confidence 4678887785 44454444 45688999999887766554444321 23688899999876532222221111
Q ss_pred CCCCcceEeecC
Q 015990 214 SSSGFAKVVANI 225 (397)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (397)
..+..|.+|.|.
T Consensus 92 ~~~~iD~li~nA 103 (306)
T PRK06197 92 AYPRIDLLINNA 103 (306)
T ss_pred hCCCCCEEEECC
Confidence 224678888775
No 411
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=73.23 E-value=28 Score=31.85 Aligned_cols=83 Identities=12% Similarity=0.154 Sum_probs=50.7
Q ss_pred CCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.++|=.|+ +|.++..+ ++.|.+|+.++.+.+..+.+.+.+... .++.++.+|+.+........+...+ ..+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~ 79 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQ--ALG 79 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH--HcC
Confidence 567888885 45555554 445889999999987766665554332 4788999998765422111111111 124
Q ss_pred CcceEeecCCC
Q 015990 217 GFAKVVANIPF 227 (397)
Q Consensus 217 ~~d~Vv~NlPy 227 (397)
..|.+|.|..+
T Consensus 80 ~~d~vi~~ag~ 90 (250)
T TIGR03206 80 PVDVLVNNAGW 90 (250)
T ss_pred CCCEEEECCCC
Confidence 57888877643
No 412
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=72.87 E-value=3.5 Score=34.83 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=39.0
Q ss_pred chHHHHHhhhc--CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHhh
Q 015990 336 KMLRKSLQHLC--TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLISY 390 (397)
Q Consensus 336 K~l~n~L~~~~--~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~~~ 390 (397)
|.+.-+|..++ .......++..+|++++.+.. +|+.+|...|.+.....|
T Consensus 13 k~v~~aL~~I~GIG~~~a~~i~~~lgi~~~~~~~-----~L~~~qi~~l~~~i~~~~ 64 (122)
T PRK05179 13 KRVVIALTYIYGIGRTRAKEILAAAGIDPDTRVK-----DLTDEELDKIREEIDKNY 64 (122)
T ss_pred cEEEeeecccccccHHHHHHHHHHhCcCcccccc-----cCCHHHHHHHHHHHHhhc
Confidence 44555666554 455567889999999999999 999999999998776544
No 413
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=72.41 E-value=24 Score=32.94 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=48.1
Q ss_pred CCCEEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh-hhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~-~~~~~~~~~~~~ 215 (397)
+++++|=.|++ |.++ ..|++.|.+|+.++.+++.++.+.+.. ..++..+.+|+.+..-.. .+....+ ..
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 77 (262)
T TIGR03325 4 KGEVVLVTGGA-SGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCVA---AF 77 (262)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCceEEEEeccCCHHHHHHHHHHHHH---Hh
Confidence 35678888864 4444 444556899999999887665554432 236888889987754221 1111222 12
Q ss_pred CCcceEeecC
Q 015990 216 SGFAKVVANI 225 (397)
Q Consensus 216 ~~~d~Vv~Nl 225 (397)
+..|.+|.|.
T Consensus 78 g~id~li~~A 87 (262)
T TIGR03325 78 GKIDCLIPNA 87 (262)
T ss_pred CCCCEEEECC
Confidence 4678888774
No 414
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.12 E-value=16 Score=39.38 Aligned_cols=54 Identities=22% Similarity=0.422 Sum_probs=39.9
Q ss_pred CEEEEEcCcc-cHHH-HHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccch
Q 015990 143 DIVLEIGPGT-GSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201 (397)
Q Consensus 143 ~~VLEIG~G~-G~lt-~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~ 201 (397)
++|+=+|||. |... ..|.+.+.+++.+|.|++.++.+++. +..++.||+.+.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~ 456 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDL 456 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHH
Confidence 5788788874 4332 33444578999999999999988762 46799999998753
No 415
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=72.10 E-value=23 Score=32.97 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.++++|=.|++.| ++.. |++.|++|+.++.++. +.+.+.... ..++.++.+|+.+..-...+.+...+ ..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 81 (251)
T PRK12481 7 NGKVAIITGCNTG-LGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVE--VM 81 (251)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHH--Hc
Confidence 4678998886544 4444 4556889999887542 222222222 24788899998876432222221111 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|.-
T Consensus 82 g~iD~lv~~ag 92 (251)
T PRK12481 82 GHIDILINNAG 92 (251)
T ss_pred CCCCEEEECCC
Confidence 56888887753
No 416
>PRK06182 short chain dehydrogenase; Validated
Probab=71.90 E-value=22 Score=33.35 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=47.5
Q ss_pred CCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
+++||=.|+ +|.++..++ +.|.+|++++.+++-++.+.. .+++++.+|+.+...-....+...+ ..+.
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~--~~~~ 74 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTIIA--EEGR 74 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHHH--hcCC
Confidence 467887885 455555554 458899999998875543322 2478889998776432211111111 2246
Q ss_pred cceEeecCCC
Q 015990 218 FAKVVANIPF 227 (397)
Q Consensus 218 ~d~Vv~NlPy 227 (397)
.|.+|.|..+
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 7899888654
No 417
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=71.89 E-value=7.8 Score=40.78 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=36.0
Q ss_pred CCCCCEEEEEcCcc-cHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 015990 139 VQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 139 ~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~~vE~d~~~i~~a~~ 181 (397)
..++++|+=+|||. |..+...++. |+.|+++|.+++..+.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45789999999996 6666666664 8899999999999998887
No 418
>PRK06914 short chain dehydrogenase; Provisional
Probab=71.62 E-value=27 Score=32.84 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=49.1
Q ss_pred CCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcc---CCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~---~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
+.++|=.|+ +|.++..+ +++|.+|++++.+++-.+...+.... ..+++++.+|+.+......+.+..+ .
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~ 78 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK---E 78 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH---h
Confidence 457888884 44555544 45688999999988766555443322 2378899999987643221222222 1
Q ss_pred CCCcceEeecCC
Q 015990 215 SSGFAKVVANIP 226 (397)
Q Consensus 215 ~~~~d~Vv~NlP 226 (397)
.+..|.||.|..
T Consensus 79 ~~~id~vv~~ag 90 (280)
T PRK06914 79 IGRIDLLVNNAG 90 (280)
T ss_pred cCCeeEEEECCc
Confidence 245688877743
No 419
>PRK07806 short chain dehydrogenase; Provisional
Probab=71.49 E-value=25 Score=32.25 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=45.9
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCH-HHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQ-HMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~-~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
.+++||=.|+ +|.++..+ ++.|.+|+++..+. ...+.+...+.. ..++.++.+|+.+......+.+.... .
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~ 81 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE--E 81 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--h
Confidence 3568888885 34454444 44588999887754 233333333322 23688899998875432111111111 1
Q ss_pred CCCcceEeecCC
Q 015990 215 SSGFAKVVANIP 226 (397)
Q Consensus 215 ~~~~d~Vv~NlP 226 (397)
.+..|.||.|..
T Consensus 82 ~~~~d~vi~~ag 93 (248)
T PRK07806 82 FGGLDALVLNAS 93 (248)
T ss_pred CCCCcEEEECCC
Confidence 245788887764
No 420
>PRK09186 flagellin modification protein A; Provisional
Probab=71.22 E-value=27 Score=32.13 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=48.7
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhcc---CCceEEEEccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~---~~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
.+++||=.|++ |.++..+ ++.|.+|+++..+++..+.+.+.+.. ...+.++.+|+.+..--..+.+....
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~-- 79 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAE-- 79 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHH--
Confidence 35678888864 4455444 44588999999988776665555422 12567778999875422111111111
Q ss_pred CCCCcceEeecC
Q 015990 214 SSSGFAKVVANI 225 (397)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (397)
..+..|.||.|.
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 124578888774
No 421
>PRK05855 short chain dehydrogenase; Validated
Probab=71.21 E-value=23 Score=36.97 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=50.3
Q ss_pred CCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.++|=+|+ +|.++.. |++.|.+|+.++.+.+-.+.+.+.+... .++.++.+|+.+......+.+...+ ..+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~--~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRA--EHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH--hcC
Confidence 457777775 4555544 4456889999999987766555544332 3788999999876532222221111 234
Q ss_pred CcceEeecC
Q 015990 217 GFAKVVANI 225 (397)
Q Consensus 217 ~~d~Vv~Nl 225 (397)
..|.+|.|-
T Consensus 392 ~id~lv~~A 400 (582)
T PRK05855 392 VPDIVVNNA 400 (582)
T ss_pred CCcEEEECC
Confidence 678888774
No 422
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=71.15 E-value=32 Score=33.40 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=49.7
Q ss_pred CCEEEEEcCcccH---HHHHHHHcC-CcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGS---LTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~-~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.++|=.|++.|. ++..|++.| .+|+.+..+++-.+.+.+.+... .++.++..|+.+..-...+.+.+.+ ..+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRE--SGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHH--hCC
Confidence 3567777765432 234455568 89999998887666555544322 3678888998776432222222211 234
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|-.
T Consensus 81 ~iD~lI~nAG 90 (314)
T TIGR01289 81 PLDALVCNAA 90 (314)
T ss_pred CCCEEEECCC
Confidence 6788888853
No 423
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.86 E-value=21 Score=33.54 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=45.3
Q ss_pred CCCEEEEEcC-cccHH----HHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGP-GTGSL----TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~-G~G~l----t~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+++||=.|. |++.+ +..+++.|++|+.++...+..+.+++.....+....+..|+.+.+--+.+.+...+ ..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~--~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQ--HW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHH--Hh
Confidence 4578888896 34434 44555678899887654332233322222223334677888776432222222211 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|.-
T Consensus 83 g~iD~lvnnAG 93 (260)
T PRK06997 83 DGLDGLVHSIG 93 (260)
T ss_pred CCCcEEEEccc
Confidence 57899988853
No 424
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.67 E-value=20 Score=33.48 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=48.2
Q ss_pred CCCEEEEEcCc-ccHHHHH----HHHcCCcEEEEeCCH--HHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGPG-TGSLTNV----LLNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~G-~G~lt~~----La~~~~~V~~vE~d~--~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
.++++|=.|+| ++.++.. |++.|++|+.++.+. +..+.+.+.+. .++.++..|+.+..--+.+.+...+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~-- 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP--EPAPVLELDVTNEEHLASLADRVRE-- 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC--CCCcEEeCCCCCHHHHHHHHHHHHH--
Confidence 45789999983 3444444 445688999988663 44444443332 2567888998876432222222111
Q ss_pred CCCCcceEeecCC
Q 015990 214 SSSGFAKVVANIP 226 (397)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (397)
..+..|.+|.|--
T Consensus 82 ~~g~iD~li~nAG 94 (256)
T PRK07889 82 HVDGLDGVVHSIG 94 (256)
T ss_pred HcCCCcEEEEccc
Confidence 2356888888753
No 425
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=70.52 E-value=29 Score=32.18 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=47.0
Q ss_pred CCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcc-C--CceEEEEccccccchhhhhh-hHHhhhc
Q 015990 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHML-SLFERRK 213 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~-~--~~v~ii~gD~~~~~~~~~~~-~~~~~~~ 213 (397)
+++||=.|. +|.++.. |+++|.+|+.++.+....+...+.+.. . .++.++.+|+.+........ +..+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~--- 77 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE--- 77 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH---
Confidence 356888884 4555544 455688999999987655544433321 1 36889999987653221111 1111
Q ss_pred CCCCcceEeecC
Q 015990 214 SSSGFAKVVANI 225 (397)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (397)
..+..|.||-|.
T Consensus 78 ~~~~id~vv~~a 89 (259)
T PRK12384 78 IFGRVDLLVYNA 89 (259)
T ss_pred HcCCCCEEEECC
Confidence 124578887764
No 426
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=70.09 E-value=31 Score=31.83 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=45.1
Q ss_pred EEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 144 IVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
+||=.| |+|.++..++ +.|.+|++++.+++-++.+...+. .+++++.+|+.+..--....+...+ ..+..|
T Consensus 2 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~--~~~~id 76 (248)
T PRK10538 2 IVLVTG-ATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIEEMLASLPA--EWRNID 76 (248)
T ss_pred EEEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--cceEEEEecCCCHHHHHHHHHHHHH--HcCCCC
Confidence 355555 4455555544 458899999999876665554432 3688899998776422111111111 124578
Q ss_pred eEeecC
Q 015990 220 KVVANI 225 (397)
Q Consensus 220 ~Vv~Nl 225 (397)
.||.|.
T Consensus 77 ~vi~~a 82 (248)
T PRK10538 77 VLVNNA 82 (248)
T ss_pred EEEECC
Confidence 887664
No 427
>PRK08324 short chain dehydrogenase; Validated
Probab=70.09 E-value=26 Score=38.25 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhh-hHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~-~~~~~~~~~ 215 (397)
.+++||=.|++ |.++. .+++.|.+|++++.+++-.+.+.+.+....++.++.+|+.+........ ...+ ..
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~---~~ 496 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAAL---AF 496 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHH---Hc
Confidence 45788888853 33443 4445688999999998877666655543247888999987654221111 1111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.||.|.-
T Consensus 497 g~iDvvI~~AG 507 (681)
T PRK08324 497 GGVDIVVSNAG 507 (681)
T ss_pred CCCCEEEECCC
Confidence 46788887754
No 428
>PRK06057 short chain dehydrogenase; Provisional
Probab=69.95 E-value=27 Score=32.39 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=45.8
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
++++||=+|++ |.++..+ +++|++|++++.++.-.+...+.+. ..++.+|..+....+.+.+.... ..+
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~~--~~~ 78 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG----GLFVPTDVTDEDAVNALFDTAAE--TYG 78 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC----CcEEEeeCCCHHHHHHHHHHHHH--HcC
Confidence 46789999974 4555444 4568899999998776555444432 25677888765422211111111 124
Q ss_pred CcceEeecC
Q 015990 217 GFAKVVANI 225 (397)
Q Consensus 217 ~~d~Vv~Nl 225 (397)
..|.||.|.
T Consensus 79 ~id~vi~~a 87 (255)
T PRK06057 79 SVDIAFNNA 87 (255)
T ss_pred CCCEEEECC
Confidence 578877664
No 429
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=69.92 E-value=4.3 Score=33.80 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=38.4
Q ss_pred chHHHHHhhhc--CHHHHHHHHHHCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHhh
Q 015990 336 KMLRKSLQHLC--TSLEIEKALGDVGLPATAAADYKFPITLPSTEYTLFMEHNLISY 390 (397)
Q Consensus 336 K~l~n~L~~~~--~~~~~~~~l~~~gi~~~~R~e~~~~~~L~~~~~~~l~~~~~~~~ 390 (397)
|.+..+|..++ .......++..+||+++.+.. +|+.++...|.+.....|
T Consensus 11 k~v~~aL~~i~GIG~~~a~~i~~~lgi~~~~~~~-----~L~~~qi~~l~~~l~~~~ 62 (113)
T TIGR03631 11 KRVEIALTYIYGIGRTRARKILEKAGIDPDKRVK-----DLTEEELNAIREEIEAKY 62 (113)
T ss_pred CEEeeeeeeeecccHHHHHHHHHHhCcCcccccc-----cCCHHHHHHHHHHHHhcC
Confidence 45555666554 455566889999999999988 999999999998764443
No 430
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.71 E-value=33 Score=31.19 Aligned_cols=82 Identities=13% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCEEEEEcCcccHHHHHHH----HcCCcEEEE-eCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhh-HHhhhcC
Q 015990 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAI-EKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLS-LFERRKS 214 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~~v-E~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~-~~~~~~~ 214 (397)
+++||=+| |+|.++..++ +.|.+|+.+ +.+++-.+.+.+.+.. ..++.++.+|+.+..-...+.+ +.. .
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~ 80 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVE---K 80 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---H
Confidence 45777777 4566665554 458899988 9887766555554433 2368899999987642211111 111 1
Q ss_pred CCCcceEeecCCC
Q 015990 215 SSGFAKVVANIPF 227 (397)
Q Consensus 215 ~~~~d~Vv~NlPy 227 (397)
.+..|.||.|..+
T Consensus 81 ~~~id~vi~~ag~ 93 (247)
T PRK05565 81 FGKIDILVNNAGI 93 (247)
T ss_pred hCCCCEEEECCCc
Confidence 2357888877543
No 431
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=69.63 E-value=26 Score=34.51 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=40.2
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccc
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~ 200 (397)
.+.+||=.| |+|.++..+++ .|.+|++++.+..-.+.....+...++++++.+|+.+..
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 71 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEG 71 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHH
Confidence 456888888 56777766665 588999998876544433333333347889999987653
No 432
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=69.46 E-value=23 Score=35.01 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=38.5
Q ss_pred HHhcCCCCCEEEEEcC--cccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHh
Q 015990 135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~ 183 (397)
+...+.++++||=.|+ |.|.++..+++. |.+|++++.+++-.+.+++.+
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l 203 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL 203 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc
Confidence 4456788999999987 478788878775 889999999988887776444
No 433
>PRK06940 short chain dehydrogenase; Provisional
Probab=69.12 E-value=33 Score=32.51 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=47.9
Q ss_pred EEEEEcCcccHHHHHHHH---cCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 144 IVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~La~---~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
.+|=-|+ |.++..+++ .|.+|+.++.+++-.+.+.+.+... .++.++.+|+.+..--..+.+... ..+..|
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~---~~g~id 78 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ---TLGPVT 78 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH---hcCCCC
Confidence 4555554 457666655 4789999999877665554444332 368888999877643221222111 125688
Q ss_pred eEeecCCC
Q 015990 220 KVVANIPF 227 (397)
Q Consensus 220 ~Vv~NlPy 227 (397)
.+|.|--.
T Consensus 79 ~li~nAG~ 86 (275)
T PRK06940 79 GLVHTAGV 86 (275)
T ss_pred EEEECCCc
Confidence 88888643
No 434
>PRK05875 short chain dehydrogenase; Provisional
Probab=68.99 E-value=36 Score=31.90 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcc---CCceEEEEccccccchhh-hhhhHHhhh
Q 015990 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRS-HMLSLFERR 212 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~---~~~v~ii~gD~~~~~~~~-~~~~~~~~~ 212 (397)
++++||=.|++ |.++..++ +.|.+|++++.+++-.+...+.+.. ..++.++.+|+.+..... .+....+
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-- 82 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA-- 82 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH--
Confidence 35688888854 44555444 4688999999987665544444322 147888899987653211 1111111
Q ss_pred cCCCCcceEeecC
Q 015990 213 KSSSGFAKVVANI 225 (397)
Q Consensus 213 ~~~~~~d~Vv~Nl 225 (397)
..+..|.+|.|.
T Consensus 83 -~~~~~d~li~~a 94 (276)
T PRK05875 83 -WHGRLHGVVHCA 94 (276)
T ss_pred -HcCCCCEEEECC
Confidence 124578887664
No 435
>PRK07825 short chain dehydrogenase; Provisional
Probab=68.97 E-value=34 Score=32.06 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=47.8
Q ss_pred CCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
+.+||=.|++ |.++.. |+++|.+|+.++.+++..+.+.+.+ +++.++.+|+.+.+--+...+-... ..+.
T Consensus 5 ~~~ilVtGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~ 78 (273)
T PRK07825 5 GKVVAITGGA-RGIGLATARALAALGARVAIGDLDEALAKETAAEL---GLVVGGPLDVTDPASFAAFLDAVEA--DLGP 78 (273)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---ccceEEEccCCCHHHHHHHHHHHHH--HcCC
Confidence 4678888864 445444 4556889999999987766554443 2578889998875422111111111 1245
Q ss_pred cceEeecC
Q 015990 218 FAKVVANI 225 (397)
Q Consensus 218 ~d~Vv~Nl 225 (397)
.|.+|.|.
T Consensus 79 id~li~~a 86 (273)
T PRK07825 79 IDVLVNNA 86 (273)
T ss_pred CCEEEECC
Confidence 78888774
No 436
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=68.82 E-value=46 Score=33.89 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCcccHH-----HHHHHHcCCcEEEEeCCHHHH------------HHHHHHhccCC-ceEEEEccccccch
Q 015990 140 QEGDIVLEIGPGTGSL-----TNVLLNAGATVLAIEKDQHMV------------GLVRERFASID-QLKVLQEDFVKCHI 201 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~l-----t~~La~~~~~V~~vE~d~~~i------------~~a~~~~~~~~-~v~ii~gD~~~~~~ 201 (397)
..++++|=+|+.+|.- +..+ +.|+++++++.+.+-. +...+.++..+ .+..+.+|+.+...
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 3567899999977653 3355 6688988887532111 11222222223 56778999987654
Q ss_pred hhhhhhHHhhhcCCCCcceEeecCCCc
Q 015990 202 RSHMLSLFERRKSSSGFAKVVANIPFN 228 (397)
Q Consensus 202 ~~~~~~~~~~~~~~~~~d~Vv~NlPy~ 228 (397)
.+...+.+.+ ..+..|.+|.|+.+-
T Consensus 118 v~~lie~I~e--~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIELIKQ--DLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHH--hcCCCCEEEECCccC
Confidence 3333333322 235789999998764
No 437
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=68.74 E-value=37 Score=31.19 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=47.4
Q ss_pred EEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchh-hhhhhHHhhhcCCCC
Q 015990 144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSSSG 217 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~-~~~~~~~~~~~~~~~ 217 (397)
++|=.|+ +|.++..+ ++.|.+|+.++.+++..+.+.+.+... .++.++.+|+.+.... ..+..+.+ ..+.
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~---~~~~ 77 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAE---KFGG 77 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---HcCC
Confidence 4666674 45555544 456889999999877665554444332 3788899998775421 11111111 1245
Q ss_pred cceEeecCCC
Q 015990 218 FAKVVANIPF 227 (397)
Q Consensus 218 ~d~Vv~NlPy 227 (397)
.|.+|.|...
T Consensus 78 id~vi~~ag~ 87 (254)
T TIGR02415 78 FDVMVNNAGV 87 (254)
T ss_pred CCEEEECCCc
Confidence 7888877643
No 438
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=68.42 E-value=18 Score=34.32 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=27.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 015990 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRER 182 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~ 182 (397)
....|||+|+|+|.-+...+.. +.+|+.-|. +..++.++.+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~ 127 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFN 127 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHh
Confidence 4567999999999777777775 556666665 3444444443
No 439
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=68.17 E-value=41 Score=30.81 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=46.7
Q ss_pred CCCEEEEEcCcccHHH----HHHHHcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+++||=.|++. .++ ..|++.|.+|+.++.++. +.+.+.+.. .+++.++.+|+.+..-...+.+...+ ..
T Consensus 4 ~~k~vlItGas~-gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 78 (248)
T TIGR01832 4 EGKVALVTGANT-GLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVE--EF 78 (248)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH--Hc
Confidence 467888888754 344 444556889999998652 222222222 24688999999876432211111111 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|.-
T Consensus 79 ~~~d~li~~ag 89 (248)
T TIGR01832 79 GHIDILVNNAG 89 (248)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 440
>PRK05993 short chain dehydrogenase; Provisional
Probab=67.92 E-value=30 Score=32.66 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=47.0
Q ss_pred CCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhh-hhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~-~~~~~~~~~~~~ 216 (397)
+++||=.|++ |.++..+ ++.|.+|++++.+++.++.+.+ .+++++.+|+.+....+. +....+. ..+
T Consensus 4 ~k~vlItGas-ggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~~--~~g 75 (277)
T PRK05993 4 KRSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVAALEA-----EGLEAFQLDYAEPESIAALVAQVLEL--SGG 75 (277)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----CCceEEEccCCCHHHHHHHHHHHHHH--cCC
Confidence 4678888864 5454444 4568899999999876655443 247788899877532111 1111111 124
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|-.
T Consensus 76 ~id~li~~Ag 85 (277)
T PRK05993 76 RLDALFNNGA 85 (277)
T ss_pred CccEEEECCC
Confidence 6788888743
No 441
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=67.82 E-value=15 Score=40.19 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHhcCCCccccCCCccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHcCC
Q 015990 85 GAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164 (397)
Q Consensus 85 ~ar~~mv~~~~~~~~~~~~~~~~l~~~~~~~~k~~GQnfl~~~~i~~~i~~~~~~~~~~~VLEIG~G~G~lt~~La~~~~ 164 (397)
.||.....+-+|.+.+.......+.-....+ -+-|...... + .....+..++|--.|-|.+....++.|+
T Consensus 44 ~ARAvI~~sL~P~d~d~~~~~~~l~~~~~~~---h~~n~~~p~~----~---~~~~~~~~~lDPfAG~GSIPlEAlRLG~ 113 (875)
T COG1743 44 GARAVILASLLPEDTDENAFLSSLRLSEGEP---HRLNPRWPQP----I---ETPFEGPKLLDPFAGGGSIPLEALRLGL 113 (875)
T ss_pred HHHHHHHHhhCCCcCchHHhhhhhhccCCCC---CCcccccccc----c---cCcccCCcccccccCCCccchHHHhcCc
Confidence 3444444444477877777766663221111 1122221111 1 3345677899999999999999999999
Q ss_pred cEEEEeCCHHHHHHHHHHhcc
Q 015990 165 TVLAIEKDQHMVGLVRERFAS 185 (397)
Q Consensus 165 ~V~~vE~d~~~i~~a~~~~~~ 185 (397)
.|+++|.+|-++-.+++.++.
T Consensus 114 ~v~AvelnPvAylfLKavlEy 134 (875)
T COG1743 114 EVVAVELNPVAYLFLKAVLEY 134 (875)
T ss_pred eeEEEecccHHHHHHHHHHhc
Confidence 999999999999999988764
No 442
>PRK07904 short chain dehydrogenase; Provisional
Probab=67.80 E-value=34 Score=31.98 Aligned_cols=84 Identities=7% Similarity=0.098 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCcccHHHHHHH----HcC-CcEEEEeCCHHH-HHHHHHHhccC--CceEEEEccccccchhhhhhhHHhh
Q 015990 140 QEGDIVLEIGPGTGSLTNVLL----NAG-ATVLAIEKDQHM-VGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La----~~~-~~V~~vE~d~~~-i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~ 211 (397)
..+.+||=.|++ |.++..++ +.+ .+|+.++.+++- .+.+.+.+... .+++++.+|+.+..-.....+...
T Consensus 6 ~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~- 83 (253)
T PRK07904 6 GNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF- 83 (253)
T ss_pred CCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH-
Confidence 356789999974 45555554 454 799999988663 44443333322 278999999976542111111111
Q ss_pred hcCCCCcceEeecCCC
Q 015990 212 RKSSSGFAKVVANIPF 227 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlPy 227 (397)
..+..|.+|.|...
T Consensus 84 --~~g~id~li~~ag~ 97 (253)
T PRK07904 84 --AGGDVDVAIVAFGL 97 (253)
T ss_pred --hcCCCCEEEEeeec
Confidence 12468888877644
No 443
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=67.73 E-value=40 Score=31.37 Aligned_cols=83 Identities=8% Similarity=0.116 Sum_probs=47.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCcEEEEe-CCHHHHHHHHHHhcc--CCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~~vE-~d~~~i~~a~~~~~~--~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
++++||=.|++.|. ++..|++.|++|+.+. .+++..+...+.+.. ..++.++..|+.+..-...+.+.+.. .
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE--D 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--h
Confidence 46788888865442 2445556688988774 455544443333322 23688999999876432222222211 2
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
.+..|.+|.|-
T Consensus 85 ~g~id~lv~nA 95 (260)
T PRK08416 85 FDRVDFFISNA 95 (260)
T ss_pred cCCccEEEECc
Confidence 25678888775
No 444
>PRK06179 short chain dehydrogenase; Provisional
Probab=67.45 E-value=23 Score=33.07 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=46.3
Q ss_pred CCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
+..||=.|+ +|.++..++ ++|.+|++++.++...+ ...+++++.+|+.+..--+...+...+ ..+.
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~--~~g~ 73 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVIA--RAGR 73 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHHH--hCCC
Confidence 457888884 566666554 45889999998865332 123688899998765422111111111 2346
Q ss_pred cceEeecCCC
Q 015990 218 FAKVVANIPF 227 (397)
Q Consensus 218 ~d~Vv~NlPy 227 (397)
.|.+|.|--+
T Consensus 74 ~d~li~~ag~ 83 (270)
T PRK06179 74 IDVLVNNAGV 83 (270)
T ss_pred CCEEEECCCC
Confidence 7888887543
No 445
>PRK06701 short chain dehydrogenase; Provisional
Probab=67.00 E-value=36 Score=32.58 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCH-HHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~-~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
++.+||=.|++ |.++.. ++++|.+|+.+..++ ...+.....+... .++.++.+|+.+....+...+...+ .
T Consensus 45 ~~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~--~ 121 (290)
T PRK06701 45 KGKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVR--E 121 (290)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH--H
Confidence 46788888854 444444 445688999988764 2333333333322 3688899998775432211111111 1
Q ss_pred CCCcceEeecCC
Q 015990 215 SSGFAKVVANIP 226 (397)
Q Consensus 215 ~~~~d~Vv~NlP 226 (397)
.+..|.||.|..
T Consensus 122 ~~~iD~lI~~Ag 133 (290)
T PRK06701 122 LGRLDILVNNAA 133 (290)
T ss_pred cCCCCEEEECCc
Confidence 245788886643
No 446
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=66.96 E-value=17 Score=34.99 Aligned_cols=46 Identities=35% Similarity=0.528 Sum_probs=36.4
Q ss_pred HhcCCCCCEEEEEcCc-ccHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 015990 136 AAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 136 ~~~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~ 181 (397)
...+.++++||..|+| .|..+..+++. |.+|++++.+++..+.+++
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 3456788899998876 47777777774 8899999999998888855
No 447
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=66.95 E-value=13 Score=35.53 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=29.1
Q ss_pred EEEEEcCcc--cHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Q 015990 144 IVLEIGPGT--GSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (397)
Q Consensus 144 ~VLEIG~G~--G~lt~~La~~~~~V~~vE~d~~~i~~a~~~ 182 (397)
+|.=||+|. |.++..|.+.|.+|+++|.+++..+.+.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~ 42 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER 42 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 355578775 556667777788999999999888777653
No 448
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=66.70 E-value=24 Score=34.85 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=40.9
Q ss_pred CCEEEEEcCcccHH----HHHHHHcCCcEEEEeCC----HHHHHHHHHHhccCCceEEEEccccccchh
Q 015990 142 GDIVLEIGPGTGSL----TNVLLNAGATVLAIEKD----QHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (397)
Q Consensus 142 ~~~VLEIG~G~G~l----t~~La~~~~~V~~vE~d----~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~ 202 (397)
+.+||=.| |.|++ ...|.++|..|++||.= ...+..+++.......+.++++|..+...-
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L 69 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEAL 69 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHH
Confidence 35778777 55655 35667789999999952 334445555444435899999999887653
No 449
>PRK06114 short chain dehydrogenase; Provisional
Probab=66.19 E-value=39 Score=31.29 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=47.7
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHH-HHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQH-MVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~-~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
+++++|=.| |+|.++..+++ .|++|+.++.+.+ ..+.+.+.+.. ..++.++.+|+.+..-.....+.... .
T Consensus 7 ~~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~--~ 83 (254)
T PRK06114 7 DGQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA--E 83 (254)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH--H
Confidence 356788888 44556655554 5889999987642 23333333332 23688889998765422111111111 2
Q ss_pred CCCcceEeecCCC
Q 015990 215 SSGFAKVVANIPF 227 (397)
Q Consensus 215 ~~~~d~Vv~NlPy 227 (397)
.+..|.+|.|...
T Consensus 84 ~g~id~li~~ag~ 96 (254)
T PRK06114 84 LGALTLAVNAAGI 96 (254)
T ss_pred cCCCCEEEECCCC
Confidence 2567888877643
No 450
>PRK06500 short chain dehydrogenase; Provisional
Probab=65.80 E-value=53 Score=29.99 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=48.5
Q ss_pred CCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
+++||=.|++ |.++.. |++.|.+|++++.+++..+.+.+.+. .++.++++|..+......+.+.+.+ ..+.
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~ 80 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALAE--AFGR 80 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHH--HhCC
Confidence 5677777754 445444 44568899999998776655544432 3677888888765432222221111 1246
Q ss_pred cceEeecCCC
Q 015990 218 FAKVVANIPF 227 (397)
Q Consensus 218 ~d~Vv~NlPy 227 (397)
.|.+|.|..+
T Consensus 81 id~vi~~ag~ 90 (249)
T PRK06500 81 LDAVFINAGV 90 (249)
T ss_pred CCEEEECCCC
Confidence 7888877543
No 451
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.45 E-value=43 Score=35.29 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHH-cCCcEEEEeCCHHHHHHHHH
Q 015990 140 QEGDIVLEIGPGT-GSLTNVLLN-AGATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 140 ~~~~~VLEIG~G~-G~lt~~La~-~~~~V~~vE~d~~~i~~a~~ 181 (397)
.++.+|+=+|+|. |..+..+++ .|+.|+++|.+++..+.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3568999999986 455555555 48899999999998877776
No 452
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.12 E-value=43 Score=30.69 Aligned_cols=82 Identities=10% Similarity=0.177 Sum_probs=46.0
Q ss_pred CCEEEEEcCcccHHHHHHH----HcCCcEEE-EeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 142 GDIVLEIGPGTGSLTNVLL----NAGATVLA-IEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~~-vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
+.+||=.|. +|.++..++ +.|.+|+. ...+....+.+.+.+.. ..++.++.+|+.+........+...+ ..
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 80 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDE--EF 80 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH--Hc
Confidence 457887775 465555544 45778776 35566555444444332 24788889998765422111111111 12
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.||.|..
T Consensus 81 ~~id~vi~~ag 91 (250)
T PRK08063 81 GRLDVFVNNAA 91 (250)
T ss_pred CCCCEEEECCC
Confidence 45788887753
No 453
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=65.05 E-value=6.1 Score=35.69 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=18.7
Q ss_pred HHHHHHcCCcEEEEeCCHHHHHHHHH
Q 015990 156 TNVLLNAGATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 156 t~~La~~~~~V~~vE~d~~~i~~a~~ 181 (397)
+..+++.|.+|+|+|+|++.++.+++
T Consensus 16 A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 16 AAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp HHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred HHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 34555678999999999998887764
No 454
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.04 E-value=41 Score=31.50 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=47.8
Q ss_pred CCCEEEEEcCcc-cHHH----HHHHHcCCcEEEEeCCH---HHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhh
Q 015990 141 EGDIVLEIGPGT-GSLT----NVLLNAGATVLAIEKDQ---HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (397)
Q Consensus 141 ~~~~VLEIG~G~-G~lt----~~La~~~~~V~~vE~d~---~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~ 212 (397)
.++.+|=.|.+. +.++ ..|++.|++|+.++.+. +.++.+.+... .+++.++..|+.+..-.+.+.+...+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~- 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKE- 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHH-
Confidence 467889999752 4444 44455688999886542 33333333332 24688889999876432222222211
Q ss_pred cCCCCcceEeecCC
Q 015990 213 KSSSGFAKVVANIP 226 (397)
Q Consensus 213 ~~~~~~d~Vv~NlP 226 (397)
..+..|.+|.|.-
T Consensus 84 -~~g~ld~lv~nag 96 (257)
T PRK08594 84 -EVGVIHGVAHCIA 96 (257)
T ss_pred -hCCCccEEEECcc
Confidence 2356888887754
No 455
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=64.88 E-value=44 Score=30.97 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=44.6
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhh-HHhhhcCC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS-LFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~-~~~~~~~~ 215 (397)
+++.+|=.|+. |.++..+ ++.|++|++++.++. -+..++......++..+..|+.+....+.+.+ ..+ ..
T Consensus 9 ~~k~~lItG~~-~gIG~a~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 83 (253)
T PRK08993 9 EGKVAVVTGCD-TGLGQGMALGLAEAGCDIVGINIVEP-TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVA---EF 83 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEecCcch-HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---Hh
Confidence 35688888864 4454444 446889999887542 11111111112367888999876532221221 111 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|.-
T Consensus 84 ~~~D~li~~Ag 94 (253)
T PRK08993 84 GHIDILVNNAG 94 (253)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 456
>PRK06484 short chain dehydrogenase; Validated
Probab=64.84 E-value=39 Score=35.16 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=50.0
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhh-HHhhhcCCC
Q 015990 141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS-LFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~-~~~~~~~~~ 216 (397)
.++.+|=.|++.| .++..|++.|.+|+.++.+++.++.+.+... .++..+.+|+.+..-...+.+ ..+ ..+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQA---RWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHHH---HcC
Confidence 3567777776544 2234455568999999999887776665442 356678888877642221221 222 225
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|--
T Consensus 343 ~id~li~nAg 352 (520)
T PRK06484 343 RLDVLVNNAG 352 (520)
T ss_pred CCCEEEECCC
Confidence 6888888743
No 457
>PRK06180 short chain dehydrogenase; Provisional
Probab=64.82 E-value=43 Score=31.58 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=47.5
Q ss_pred CCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhh-hHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~-~~~~~~~~~~ 216 (397)
+.+||=.|++ |.++.. |+++|.+|++++.+++..+.+.+.. .+++..+.+|+.+..--.... ...+ ..+
T Consensus 4 ~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~---~~~ 77 (277)
T PRK06180 4 MKTWLITGVS-SGFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAEA---TFG 77 (277)
T ss_pred CCEEEEecCC-ChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHHH---HhC
Confidence 4578888864 344444 4456889999999987665544432 236888889987764221111 1111 124
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.||.|..
T Consensus 78 ~~d~vv~~ag 87 (277)
T PRK06180 78 PIDVLVNNAG 87 (277)
T ss_pred CCCEEEECCC
Confidence 5788887743
No 458
>PRK06484 short chain dehydrogenase; Validated
Probab=64.74 E-value=35 Score=35.50 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh-hhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~-~~~~~~~~~~~~~ 216 (397)
+++++|=.|++.| .++..|++.|++|+.++.+.+.++.+.+.+. .++.++..|+.+..--. .+....+ ..+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG--PDHHALAMDVSDEAQIREGFEQLHR---EFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEeccCCHHHHHHHHHHHHH---HhC
Confidence 4567888887665 2344555568999999998877666555442 36777888887653221 1111111 225
Q ss_pred CcceEeecCC
Q 015990 217 GFAKVVANIP 226 (397)
Q Consensus 217 ~~d~Vv~NlP 226 (397)
..|.+|.|.-
T Consensus 79 ~iD~li~nag 88 (520)
T PRK06484 79 RIDVLVNNAG 88 (520)
T ss_pred CCCEEEECCC
Confidence 6788888743
No 459
>PRK06482 short chain dehydrogenase; Provisional
Probab=64.54 E-value=46 Score=31.17 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=47.7
Q ss_pred CEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh-hhhhHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~-~~~~~~~~~~~~~~ 217 (397)
.+||=.|+ +|.++..++ +.|.+|++++.+++.++.+++... .++.++.+|+.+...-. .+.+..+ ..+.
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~~~ 76 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG--DRLWVLQLDVTDSAAVRAVVDRAFA---ALGR 76 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--CceEEEEccCCCHHHHHHHHHHHHH---HcCC
Confidence 45776775 455555544 458899999999877766555432 37889999998764221 1111121 1245
Q ss_pred cceEeecC
Q 015990 218 FAKVVANI 225 (397)
Q Consensus 218 ~d~Vv~Nl 225 (397)
.|.||.|-
T Consensus 77 id~vi~~a 84 (276)
T PRK06482 77 IDVVVSNA 84 (276)
T ss_pred CCEEEECC
Confidence 68887664
No 460
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.49 E-value=69 Score=29.00 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=59.1
Q ss_pred CCCccCCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHhccCCceEEEE
Q 015990 119 LGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (397)
Q Consensus 119 ~GQnfl~~~~i~~~i~~~~--~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~ 193 (397)
+.| |-.++..++++++.. ....+.+|-=+.|-+=+.-...... .-+|+..|.|.++-... -++++
T Consensus 50 lsq-fwy~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg---------~eFvf 119 (217)
T KOG3350|consen 50 LSQ-FWYSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYG---------TEFVF 119 (217)
T ss_pred hhh-hhcCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhcc---------ceeEE
Confidence 455 445556666666543 2345566766776554422222221 34899999998764433 35677
Q ss_pred cccccc-chhhhhhhHHhhhcCCCCcceEeecCCCc------CcHHHHHHhccC
Q 015990 194 EDFVKC-HIRSHMLSLFERRKSSSGFAKVVANIPFN------ISTDVIKQLLPM 240 (397)
Q Consensus 194 gD~~~~-~~~~~~~~~~~~~~~~~~~d~Vv~NlPy~------i~s~il~~L~~~ 240 (397)
-|.... ++++ .+. ..+|+||++|||- -++..++.|..+
T Consensus 120 YDyN~p~dlp~----~lk-----~~fdiivaDPPfL~~eCl~Kts~tik~L~r~ 164 (217)
T KOG3350|consen 120 YDYNCPLDLPD----ELK-----AHFDIIVADPPFLSEECLAKTSETIKRLQRN 164 (217)
T ss_pred eccCCCCCCHH----HHH-----hcccEEEeCCccccchhhhhhHHHHHHHhcC
Confidence 776543 2222 111 4699999999993 234556666554
No 461
>PRK07201 short chain dehydrogenase; Provisional
Probab=64.46 E-value=36 Score=36.56 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhh-HHhhhcCC
Q 015990 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLS-LFERRKSS 215 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~-~~~~~~~~ 215 (397)
++++|=.|. +|.++..++ +.|.+|+.++.+++-.+.+.+.+.. .+++.++.+|+.+........+ ..+ ..
T Consensus 371 ~k~vlItGa-s~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~---~~ 446 (657)
T PRK07201 371 GKVVLITGA-SSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILA---EH 446 (657)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---hc
Confidence 567887775 445555544 4688999999998876665554432 2478899999887643221111 111 22
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|.-
T Consensus 447 g~id~li~~Ag 457 (657)
T PRK07201 447 GHVDYLVNNAG 457 (657)
T ss_pred CCCCEEEECCC
Confidence 46788887754
No 462
>PRK06198 short chain dehydrogenase; Provisional
Probab=64.45 E-value=44 Score=30.88 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcccHHHHHHH----HcCCc-EEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNVLL----NAGAT-VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~-V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
.+++||=.|+ +|.++..++ +.|++ |+.++.+++-.+.....+... .++.++..|+.+........+.... .
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~ 81 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADE--A 81 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH--H
Confidence 4567888885 444555444 45777 999999876555443333222 3678888998765422111111111 1
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
.+..|.++.|.
T Consensus 82 ~g~id~li~~a 92 (260)
T PRK06198 82 FGRLDALVNAA 92 (260)
T ss_pred hCCCCEEEECC
Confidence 23578877664
No 463
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=63.80 E-value=21 Score=35.03 Aligned_cols=58 Identities=22% Similarity=0.129 Sum_probs=37.1
Q ss_pred CCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccc
Q 015990 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~ 200 (397)
+.+||=.| |+|.++..+++ .|.+|++++.++..............+++++.+|+.+..
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAA 65 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHH
Confidence 56788888 66776666555 588999999876543322222221236778889987653
No 464
>PRK06125 short chain dehydrogenase; Provisional
Probab=63.38 E-value=49 Score=30.68 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=49.6
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhcc--CCceEEEEccccccchhhhhhhHHhhhcC
Q 015990 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~--~~~v~ii~gD~~~~~~~~~~~~~~~~~~~ 214 (397)
.+++||=.|++ |.++.. |++.|++|++++.+++..+.+.+.+.. ..++.++..|+.+..- +..+++ .
T Consensus 6 ~~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~---~~~~~~---~ 78 (259)
T PRK06125 6 AGKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEA---REQLAA---E 78 (259)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHH---HHHHHH---H
Confidence 35788888864 445444 455688999999998877666555432 2368888899876432 122222 1
Q ss_pred CCCcceEeecC
Q 015990 215 SSGFAKVVANI 225 (397)
Q Consensus 215 ~~~~d~Vv~Nl 225 (397)
.+..|.+|.|.
T Consensus 79 ~g~id~lv~~a 89 (259)
T PRK06125 79 AGDIDILVNNA 89 (259)
T ss_pred hCCCCEEEECC
Confidence 24678888774
No 465
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=63.34 E-value=77 Score=26.81 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCcc--cHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHh
Q 015990 140 QEGDIVLEIGPGT--GSLTNVLLNAG-ATVLAIEKDQHMVGLVRERF 183 (397)
Q Consensus 140 ~~~~~VLEIG~G~--G~lt~~La~~~-~~V~~vE~d~~~i~~a~~~~ 183 (397)
.++.+|+=+|||. +.+...+++.+ ..|+.++.+++..+.+.+.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 3467899999863 22233344444 67999999987766655544
No 466
>PRK12743 oxidoreductase; Provisional
Probab=63.26 E-value=48 Score=30.69 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=46.8
Q ss_pred CCEEEEEcCcccHHHHHHHH----cCCcEEEEe-CCHHHHHHHHHHhccC-CceEEEEccccccchhhh-hhhHHhhhcC
Q 015990 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS 214 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~~vE-~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~-~~~~~~~~~~ 214 (397)
+++||=.|+ +|.++..+++ .|.+|+.+. .+.+..+.+.+.+... .++.++.+|..+..-... +..+.+ .
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~ 77 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQ---R 77 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---H
Confidence 357888885 4556655554 588888774 4555554444444333 378999999877542211 111111 2
Q ss_pred CCCcceEeecCC
Q 015990 215 SSGFAKVVANIP 226 (397)
Q Consensus 215 ~~~~d~Vv~NlP 226 (397)
.+..|.+|.|.-
T Consensus 78 ~~~id~li~~ag 89 (256)
T PRK12743 78 LGRIDVLVNNAG 89 (256)
T ss_pred cCCCCEEEECCC
Confidence 246788887753
No 467
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=63.24 E-value=26 Score=35.80 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHh-cCCCchHHHHHhhhcCHHHHHHHHHHCCC-CCCCCCCCCCCCCcCHHHHHHHHHHHH
Q 015990 320 TKSFFSMVSSAF-NGKRKMLRKSLQHLCTSLEIEKALGDVGL-PATAAADYKFPITLPSTEYTLFMEHNL 387 (397)
Q Consensus 320 ~~~f~~~v~~~F-~~rRK~l~n~L~~~~~~~~~~~~l~~~gi-~~~~R~e~~~~~~L~~~~~~~l~~~~~ 387 (397)
.+.+...+...+ ...+|++.+.|..++++.-+..+++.++| +++.+.. +|+.++..+|++...
T Consensus 274 ~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~-----~l~~~~~~~L~~~lk 338 (409)
T PF03486_consen 274 EEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVS-----ELSKKERNRLANLLK 338 (409)
T ss_dssp HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGG-----GS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchh-----hcCHHHHHHHHHHHH
Confidence 345555555554 36678999999999999888999999999 8988888 899999999998764
No 468
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=63.18 E-value=24 Score=34.64 Aligned_cols=46 Identities=33% Similarity=0.566 Sum_probs=36.2
Q ss_pred HhcCCCCCEEEEEcCcc-cHHHHHHHHc-CCcEEEEeCCHHHHHHHHH
Q 015990 136 AAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 136 ~~~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~~vE~d~~~i~~a~~ 181 (397)
...+.++++||=.|+|. |.++..+++. |.+|++++.+++..+.+++
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 35677899999999864 6666666664 7799999999998888865
No 469
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=62.97 E-value=58 Score=30.89 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=55.1
Q ss_pred CCEEEEEcCcccH---HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh-hhhhHHhhhcCCCC
Q 015990 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (397)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~-~~~~~~~~~~~~~~ 217 (397)
++.|+==|..+|. .+..|++.|++|+.+....+.++.+...+.. +.+..+.-|+.+..--+ .+..+.+ ..++
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~~---~~g~ 81 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAVEAAIEALPE---EFGR 81 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHHHHHHHHHHH---hhCc
Confidence 4566666766553 2456667799999999999998888887764 57888888888764311 1111222 2367
Q ss_pred cceEeecCC
Q 015990 218 FAKVVANIP 226 (397)
Q Consensus 218 ~d~Vv~NlP 226 (397)
.|++|-|--
T Consensus 82 iDiLvNNAG 90 (246)
T COG4221 82 IDILVNNAG 90 (246)
T ss_pred ccEEEecCC
Confidence 899998843
No 470
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=62.76 E-value=54 Score=29.65 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCEEEEEcCcccHHHHHHH----HcCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchh-hhhhhHHhhhcCC
Q 015990 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIR-SHMLSLFERRKSS 215 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~-~~~~~~~~~~~~~ 215 (397)
+.+||=.|+ +|.++..++ ++|.+|+++..++...+.....+.. ..++.++.+|+.+.... ..+..... ..
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 80 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVE---AF 80 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence 457887785 677766665 4588999999998766555444432 23788888998765321 11111111 11
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.|+.+..
T Consensus 81 ~~id~vi~~ag 91 (246)
T PRK05653 81 GALDILVNNAG 91 (246)
T ss_pred CCCCEEEECCC
Confidence 35677776653
No 471
>PRK08278 short chain dehydrogenase; Provisional
Probab=62.71 E-value=49 Score=31.17 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=46.7
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCcEEEEeCCHHH-------HHHHHHHhcc-CCceEEEEccccccchhhhhh-h
Q 015990 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHM-------VGLVRERFAS-IDQLKVLQEDFVKCHIRSHML-S 207 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~~vE~d~~~-------i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~-~ 207 (397)
.+.++|=.|++. .++. .|+++|.+|+.++.+.+- ++.+.+.+.. ..++.++.+|+.+......+. .
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 5 SGKTLFITGASR-GIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 356788888754 4444 445568899999976531 2222222222 237888999988764322111 1
Q ss_pred HHhhhcCCCCcceEeecCC
Q 015990 208 LFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 208 ~~~~~~~~~~~d~Vv~NlP 226 (397)
..+ ..+..|.+|.|..
T Consensus 84 ~~~---~~g~id~li~~ag 99 (273)
T PRK08278 84 AVE---RFGGIDICVNNAS 99 (273)
T ss_pred HHH---HhCCCCEEEECCC
Confidence 111 1246788887754
No 472
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=62.70 E-value=43 Score=29.96 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=43.9
Q ss_pred CCCEEEEEcC-c-ccH-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 141 EGDIVLEIGP-G-TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 141 ~~~~VLEIG~-G-~G~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
++.+|+=+|+ | .|. ....+++.+++|+.+..+.+..+...+.+....+.++...|..+... ..+.+ ..
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~------~~ 97 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAA---RAAAI------KG 97 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHH---HHHHH------hc
Confidence 4678988885 3 343 23444556889999999877666655544322233444445443211 00111 34
Q ss_pred cceEeecCCCc
Q 015990 218 FAKVVANIPFN 228 (397)
Q Consensus 218 ~d~Vv~NlPy~ 228 (397)
.|+|++.-|..
T Consensus 98 ~diVi~at~~g 108 (194)
T cd01078 98 ADVVFAAGAAG 108 (194)
T ss_pred CCEEEECCCCC
Confidence 67888766643
No 473
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=62.67 E-value=39 Score=32.83 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=38.2
Q ss_pred HHhcCCCCCEEEEEcC--cccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHh
Q 015990 135 AAAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~--G~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~~ 183 (397)
....++++++||=.|+ |.|.++..+++. |.+|+++..+++-.+.+++.+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l 196 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL 196 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc
Confidence 4456788999998886 567777777774 889999999988888887644
No 474
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=62.48 E-value=33 Score=29.26 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=47.3
Q ss_pred EEEEEcCcccHHHHH----HHHcCC-cEEEEeCC--HHHHHHHHHHhc-cCCceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 144 IVLEIGPGTGSLTNV----LLNAGA-TVLAIEKD--QHMVGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 144 ~VLEIG~G~G~lt~~----La~~~~-~V~~vE~d--~~~i~~a~~~~~-~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
+||=.|++ |.++.. +++.|+ +|+.+..+ .+..+.....+. ...++.+++.|+.+..-...+.+.... ..
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~ 78 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIK--RF 78 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHH--HH
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence 46667755 445444 444544 78889888 555555544443 235899999998876432222222211 23
Q ss_pred CCcceEeecCC
Q 015990 216 SGFAKVVANIP 226 (397)
Q Consensus 216 ~~~d~Vv~NlP 226 (397)
+..|.+|.|..
T Consensus 79 ~~ld~li~~ag 89 (167)
T PF00106_consen 79 GPLDILINNAG 89 (167)
T ss_dssp SSESEEEEECS
T ss_pred ccccccccccc
Confidence 57888888754
No 475
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=62.47 E-value=26 Score=33.25 Aligned_cols=49 Identities=29% Similarity=0.290 Sum_probs=34.5
Q ss_pred HHHhcCCCCCEEEEEcCc-ccHHHHHHHHc-CCc-EEEEeCCHHHHHHHHHH
Q 015990 134 AAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GAT-VLAIEKDQHMVGLVRER 182 (397)
Q Consensus 134 ~~~~~~~~~~~VLEIG~G-~G~lt~~La~~-~~~-V~~vE~d~~~i~~a~~~ 182 (397)
+..+...++++||=+|+| .|.++..+++. |.+ |+++|.+++-.+.+++.
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 344455678899988875 35555556654 665 99999999888877663
No 476
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=62.32 E-value=33 Score=33.14 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=38.3
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhc--c-CCceEEEEccccccc
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFA--S-IDQLKVLQEDFVKCH 200 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~--~-~~~v~ii~gD~~~~~ 200 (397)
.+.+||=.| |+|.++..+++ .|.+|+++..++...+....... . .++++++.+|+.+..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 69 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEG 69 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCch
Confidence 457888888 67777766665 47889888777653333222221 1 137889999998764
No 477
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=62.25 E-value=76 Score=30.50 Aligned_cols=87 Identities=14% Similarity=0.282 Sum_probs=58.0
Q ss_pred CCCEEEEEcCccc--H-HHHHHHHcCCcEEEEeCCHHHHHHHHHHhccCC--ceEEEEccccccchhhhhhhHHhhhcCC
Q 015990 141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (397)
Q Consensus 141 ~~~~VLEIG~G~G--~-lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~--~v~ii~gD~~~~~~~~~~~~~~~~~~~~ 215 (397)
.+.++|=-|+-.| . ++..|+++|.+|+.|-.+++-++.+.+.+.... .++++..|..+.+-...+.+.+.+ ..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~--~~ 82 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE--RG 82 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh--cC
Confidence 4567777776443 2 345566679999999999998888777776432 678999998887543322222221 22
Q ss_pred CCcceEeecCCCcC
Q 015990 216 SGFAKVVANIPFNI 229 (397)
Q Consensus 216 ~~~d~Vv~NlPy~i 229 (397)
...|++|-|--|..
T Consensus 83 ~~IdvLVNNAG~g~ 96 (265)
T COG0300 83 GPIDVLVNNAGFGT 96 (265)
T ss_pred CcccEEEECCCcCC
Confidence 46888898865543
No 478
>PRK07775 short chain dehydrogenase; Provisional
Probab=62.20 E-value=59 Score=30.57 Aligned_cols=81 Identities=10% Similarity=0.043 Sum_probs=47.3
Q ss_pred CCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
..+||=.|+ +|.++..+++ .|.+|+.+..+.+..+.+...+.. .+++.++.+|+.+...-..+.+.... ..+
T Consensus 10 ~~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~~ 86 (274)
T PRK07775 10 RRPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEE--ALG 86 (274)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH--hcC
Confidence 357887885 5666666554 588999988877655544443332 23688889998876432111111111 123
Q ss_pred CcceEeecC
Q 015990 217 GFAKVVANI 225 (397)
Q Consensus 217 ~~d~Vv~Nl 225 (397)
..|.+|.|.
T Consensus 87 ~id~vi~~A 95 (274)
T PRK07775 87 EIEVLVSGA 95 (274)
T ss_pred CCCEEEECC
Confidence 567777664
No 479
>PRK07074 short chain dehydrogenase; Provisional
Probab=61.75 E-value=64 Score=29.73 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=47.2
Q ss_pred CEEEEEcCcccHHHHH----HHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhh-hhhhHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~----La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~-~~~~~~~~~~~~~~ 217 (397)
+++|=.|++. .++.. |++.|.+|++++.++.-.+.+.+.+. ..+++++.+|+.+..... .+....+ ..+.
T Consensus 3 k~ilItGat~-~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~~ 77 (257)
T PRK07074 3 RTALVTGAAG-GIGQALARRFLAAGDRVLALDIDAAALAAFADALG-DARFVPVACDLTDAASLAAALANAAA---ERGP 77 (257)
T ss_pred CEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH---HcCC
Confidence 4677777644 34444 44568899999998876655554442 246888999998764321 1111111 1235
Q ss_pred cceEeecC
Q 015990 218 FAKVVANI 225 (397)
Q Consensus 218 ~d~Vv~Nl 225 (397)
.|.||.|.
T Consensus 78 ~d~vi~~a 85 (257)
T PRK07074 78 VDVLVANA 85 (257)
T ss_pred CCEEEECC
Confidence 78888775
No 480
>PRK12828 short chain dehydrogenase; Provisional
Probab=61.71 E-value=51 Score=29.69 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=46.2
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
++++||=.|. +|.++..+ ++.|.+|++++.++.-.....+.... .+++++.+|+.+........+-... ..+
T Consensus 6 ~~k~vlItGa-tg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 81 (239)
T PRK12828 6 QGKVVAITGG-FGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA-DALRIGGIDLVDPQAARRAVDEVNR--QFG 81 (239)
T ss_pred CCCEEEEECC-CCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh-cCceEEEeecCCHHHHHHHHHHHHH--HhC
Confidence 3567887774 45555554 44688999999987544333222222 2567788888765421111111111 124
Q ss_pred CcceEeecCCC
Q 015990 217 GFAKVVANIPF 227 (397)
Q Consensus 217 ~~d~Vv~NlPy 227 (397)
..|.|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (239)
T PRK12828 82 RLDALVNIAGA 92 (239)
T ss_pred CcCEEEECCcc
Confidence 57888877543
No 481
>PRK09291 short chain dehydrogenase; Provisional
Probab=61.59 E-value=47 Score=30.58 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=45.6
Q ss_pred CEEEEEcCcccHHHHHH----HHcCCcEEEEeCCHHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhhhcCCCC
Q 015990 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~L----a~~~~~V~~vE~d~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~ 217 (397)
.+||=.|++ |.++..+ ++.|++|+++..++.-.+.+.+..... .++.++.+|+.+..-. .... ...
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~~~-----~~~ 73 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDR---AQAA-----EWD 73 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHH---HHHh-----cCC
Confidence 468888864 4454444 456889999998876655554443322 3688889998765321 1111 135
Q ss_pred cceEeecC
Q 015990 218 FAKVVANI 225 (397)
Q Consensus 218 ~d~Vv~Nl 225 (397)
.|.||.|-
T Consensus 74 id~vi~~a 81 (257)
T PRK09291 74 VDVLLNNA 81 (257)
T ss_pred CCEEEECC
Confidence 78888774
No 482
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=61.55 E-value=35 Score=39.15 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=57.0
Q ss_pred CCEEEEEcCcc-cHHHH-HHHHc-CCc-------------EEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhh
Q 015990 142 GDIVLEIGPGT-GSLTN-VLLNA-GAT-------------VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (397)
Q Consensus 142 ~~~VLEIG~G~-G~lt~-~La~~-~~~-------------V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~ 205 (397)
.++|+=||||- |.... .|++. +.. |+..|.+.+..+.+.+.+ ++++.+..|+.+... +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---~~~~~v~lDv~D~e~---L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---ENAEAVQLDVSDSES---L 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---CCCceEEeecCCHHH---H
Confidence 55899999973 55443 33332 223 888999987766655543 356677777655421 1
Q ss_pred hhHHhhhcCCCCcceEeecCCCcCcHHHHHHhccCCCc
Q 015990 206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI 243 (397)
Q Consensus 206 ~~~~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~ 243 (397)
..++ ...|+|++-+|+....++....++.|..
T Consensus 643 ~~~v------~~~DaVIsalP~~~H~~VAkaAieaGkH 674 (1042)
T PLN02819 643 LKYV------SQVDVVISLLPASCHAVVAKACIELKKH 674 (1042)
T ss_pred HHhh------cCCCEEEECCCchhhHHHHHHHHHcCCC
Confidence 1111 3489999999998877777766665543
No 483
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=61.47 E-value=43 Score=32.65 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCEEEEEcCcccHHHHHHHH----cC--CcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccc
Q 015990 142 GDIVLEIGPGTGSLTNVLLN----AG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (397)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~----~~--~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~ 200 (397)
+.+||=.| |+|.++..+++ .+ .+|++++.+..-...+...+. .++++++.+|+.+..
T Consensus 4 ~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~-~~~~~~v~~Dl~d~~ 66 (324)
T TIGR03589 4 NKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP-APCLRFFIGDVRDKE 66 (324)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC-CCcEEEEEccCCCHH
Confidence 56788777 46787776665 34 579999887654333333332 247899999998753
No 484
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.25 E-value=57 Score=29.95 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=44.8
Q ss_pred CEEEEEcCcccHHHHHHH----HcCCcEEEEeCC-HHHHHHHHHHhcc-CCceEEEEccccccchhhhhhhHHhhhcCCC
Q 015990 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (397)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d-~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~ 216 (397)
+.||=.| |+|.++..++ ++|.+|++++.. ++..+...+.+.. ..++.++.+|+.+..-...+.+.... ..+
T Consensus 3 k~vlItG-~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 79 (256)
T PRK12745 3 PVALVTG-GRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQA--AWG 79 (256)
T ss_pred cEEEEeC-CCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH--hcC
Confidence 3577667 5666665554 458899999864 3333333333322 23788999999875422111111111 124
Q ss_pred CcceEeecC
Q 015990 217 GFAKVVANI 225 (397)
Q Consensus 217 ~~d~Vv~Nl 225 (397)
..|.||.|.
T Consensus 80 ~id~vi~~a 88 (256)
T PRK12745 80 RIDCLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 578888774
No 485
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=61.25 E-value=33 Score=34.34 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=52.0
Q ss_pred EEEEcCcccHHHHHHHH----cC-C-cEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCc
Q 015990 145 VLEIGPGTGSLTNVLLN----AG-A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (397)
Q Consensus 145 VLEIG~G~G~lt~~La~----~~-~-~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~ 218 (397)
|+=+|+ |..+..+++ .. . +|+..|.+.+.++.+.+.+ ...+++.+..|+.+..- +.+++ ...
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---l~~~~------~~~ 68 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPES---LAELL------RGC 68 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHH---HHHHH------TTS
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHH---HHHHH------hcC
Confidence 456787 555544443 33 2 7999999998877766543 23589999999876542 11222 345
Q ss_pred ceEeecCCCcCcHHHHHHhccCCCce
Q 015990 219 AKVVANIPFNISTDVIKQLLPMGDIF 244 (397)
Q Consensus 219 d~Vv~NlPy~i~s~il~~L~~~g~~~ 244 (397)
|+||...|.....++++..++.|...
T Consensus 69 dvVin~~gp~~~~~v~~~~i~~g~~y 94 (386)
T PF03435_consen 69 DVVINCAGPFFGEPVARACIEAGVHY 94 (386)
T ss_dssp SEEEE-SSGGGHHHHHHHHHHHT-EE
T ss_pred CEEEECCccchhHHHHHHHHHhCCCe
Confidence 88888876667777877777655443
No 486
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=60.43 E-value=20 Score=35.17 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=32.6
Q ss_pred cCCCCCEEEEEcCcc-cHHHHHHHHc---CCcEEEEeCCHHHHHHHHH
Q 015990 138 AVQEGDIVLEIGPGT-GSLTNVLLNA---GATVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 138 ~~~~~~~VLEIG~G~-G~lt~~La~~---~~~V~~vE~d~~~i~~a~~ 181 (397)
.++++++||=+|||. |.++..++++ +.+|+++|.+++-.+.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 456789999999864 4455555553 3589999999988887764
No 487
>PLN02740 Alcohol dehydrogenase-like
Probab=59.99 E-value=24 Score=35.19 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=35.5
Q ss_pred HHhcCCCCCEEEEEcCcc-cHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 015990 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~~vE~d~~~i~~a~~ 181 (397)
+...++++++||=+|+|. |.++..+++. |+ +|+++|.+++..+.+++
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 446778899999998753 5555555654 66 69999999998888865
No 488
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=59.90 E-value=22 Score=34.63 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=39.6
Q ss_pred HHhcCCCCCEEEEEcCcccHHHHHHHHcCCcEEEEeCCHHHHHHHHHHh
Q 015990 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~~vE~d~~~i~~a~~~~ 183 (397)
+.+.+..+.+|.-||+|--.+...|+...++|.+||+++.-++.-+-++
T Consensus 57 eam~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 57 EAMQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred HHHhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHH
Confidence 3445667889999999988888888888899999999998877654443
No 489
>PRK08177 short chain dehydrogenase; Provisional
Probab=59.88 E-value=32 Score=31.18 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=43.9
Q ss_pred EEEEEcCcccHH----HHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCCCCcc
Q 015990 144 IVLEIGPGTGSL----TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (397)
Q Consensus 144 ~VLEIG~G~G~l----t~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~~~~d 219 (397)
+||=.|+ +|.+ +..|++.|.+|++++.++.-.+.+++ .+++.+..+|+.+..... .+.+.. .....|
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~d~~~~~---~~~~~~-~~~~id 73 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA----LPGVHIEKLDMNDPASLD---QLLQRL-QGQRFD 73 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh----ccccceEEcCCCCHHHHH---HHHHHh-hcCCCC
Confidence 5666675 4444 44555568899999988765544332 235777888887653222 222211 124688
Q ss_pred eEeecCC
Q 015990 220 KVVANIP 226 (397)
Q Consensus 220 ~Vv~NlP 226 (397)
.|+.|..
T Consensus 74 ~vi~~ag 80 (225)
T PRK08177 74 LLFVNAG 80 (225)
T ss_pred EEEEcCc
Confidence 8887753
No 490
>PRK09135 pteridine reductase; Provisional
Probab=59.23 E-value=68 Score=29.14 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=47.2
Q ss_pred CCCEEEEEcCcccHHHHHHH----HcCCcEEEEeCC-HHHHHHHHHHhccC--CceEEEEccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~~vE~d-~~~i~~a~~~~~~~--~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
.+.+||=.|+ +|.++..++ ++|.+|++++.+ +.-.+.....+... .++.++.+|+.+..-...+.+...+
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-- 81 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVA-- 81 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHH--
Confidence 3468999995 566666554 458899999874 33333333333221 3688899999775422111111110
Q ss_pred CCCCcceEeecCC
Q 015990 214 SSSGFAKVVANIP 226 (397)
Q Consensus 214 ~~~~~d~Vv~NlP 226 (397)
..+..|.|+.|..
T Consensus 82 ~~~~~d~vi~~ag 94 (249)
T PRK09135 82 AFGRLDALVNNAS 94 (249)
T ss_pred HcCCCCEEEECCC
Confidence 1235688887754
No 491
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=59.18 E-value=19 Score=33.17 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=40.6
Q ss_pred HHHHHHcCCcEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhHHhhhcCC-CCcceEeecCCC
Q 015990 156 TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS-SGFAKVVANIPF 227 (397)
Q Consensus 156 t~~La~~~~~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~~~-~~~d~Vv~NlPy 227 (397)
+..+++.|++|+.++.+++..+..-+.+......+++..|+.+..--+.+.+...+ .. +..|.+|.|..+
T Consensus 13 a~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~g~iD~lV~~a~~ 83 (241)
T PF13561_consen 13 ARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVE--RFGGRIDILVNNAGI 83 (241)
T ss_dssp HHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHH--HHCSSESEEEEEEES
T ss_pred HHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHh--hcCCCeEEEEecccc
Confidence 45666679999999999987533332222211244699998765432222222111 22 678888877543
No 492
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=59.10 E-value=32 Score=34.69 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=47.4
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHH---HHHHHhccCCceEEEEccccccchhhhhhhHHhhhc
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVG---LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~---~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~~~~~~ 213 (397)
.+.+||=+| |+|.++..+++ +|.+|+++..++.-.+ ...+.....++++++.+|+.+.+.- ...++.
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l---~~~~~~-- 132 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSL---RKVLFS-- 132 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHH---HHHHHH--
Confidence 456899888 78888766654 5889999998764321 1111111224789999999876421 122221
Q ss_pred CCCCcceEeecC
Q 015990 214 SSSGFAKVVANI 225 (397)
Q Consensus 214 ~~~~~d~Vv~Nl 225 (397)
....+|.||.+.
T Consensus 133 ~~~~~D~Vi~~a 144 (390)
T PLN02657 133 EGDPVDVVVSCL 144 (390)
T ss_pred hCCCCcEEEECC
Confidence 011578888654
No 493
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=59.09 E-value=42 Score=32.52 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=56.9
Q ss_pred HHhcCCCC--CEEEEEcC--cccHHHHHHHHc-CC-cEEEEeCCHHHHHHHHHHhccCCceEEEEccccccchhhhhhhH
Q 015990 135 AAAAVQEG--DIVLEIGP--GTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208 (397)
Q Consensus 135 ~~~~~~~~--~~VLEIG~--G~G~lt~~La~~-~~-~V~~vE~d~~~i~~a~~~~~~~~~v~ii~gD~~~~~~~~~~~~~ 208 (397)
+...+.++ ++||=.|+ |.|..+..+++. |+ +|++++.+++-.+.+++.+.. . .++..+ +.++.+.+
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa-~--~vi~~~--~~~~~~~i--- 217 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF-D--AAINYK--TDNVAERL--- 217 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC-c--EEEECC--CCCHHHHH---
Confidence 33445555 88988885 567777777775 77 799999998888877765432 1 122221 11111111
Q ss_pred HhhhcCCCCcceEeecCCCcCcHHHHHHhccCCCce
Q 015990 209 FERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF 244 (397)
Q Consensus 209 ~~~~~~~~~~d~Vv~NlPy~i~s~il~~L~~~g~~~ 244 (397)
... ....+|+|+....-......+..+.++|.++
T Consensus 218 -~~~-~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv 251 (345)
T cd08293 218 -REL-CPEGVDVYFDNVGGEISDTVISQMNENSHII 251 (345)
T ss_pred -HHH-CCCCceEEEECCCcHHHHHHHHHhccCCEEE
Confidence 111 1235788876554333345556666666543
No 494
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=58.96 E-value=32 Score=33.59 Aligned_cols=48 Identities=25% Similarity=0.212 Sum_probs=35.7
Q ss_pred HHhcCCCCCEEEEEcCc-ccHHHHHHHHc-CCcEEEEeCCHHHHHHHHHH
Q 015990 135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER 182 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~~vE~d~~~i~~a~~~ 182 (397)
..+.++++++||=.|+| .|.++..+++. |++|++++.+++-.+.+++.
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 34677889999999975 34455556654 77899999998888887763
No 495
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=58.92 E-value=13 Score=36.21 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=59.2
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHhcc------CCceEEEEccccccchhhhhhhHHh
Q 015990 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFE 210 (397)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~~vE~d~~~i~~a~~~~~~------~~~v~ii~gD~~~~~~~~~~~~~~~ 210 (397)
+...++||=||-|-|...+..+++ ..++.-+|+|...++..++.+.. .+++.+.-||...+-..
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~-------- 190 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED-------- 190 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH--------
Confidence 346789999999999998888876 34899999999999998887642 24899999998665211
Q ss_pred hhcCCCCcceEeecC
Q 015990 211 RRKSSSGFAKVVANI 225 (397)
Q Consensus 211 ~~~~~~~~d~Vv~Nl 225 (397)
...+++|+|+.+.
T Consensus 191 --~~~~~~dVii~ds 203 (337)
T KOG1562|consen 191 --LKENPFDVIITDS 203 (337)
T ss_pred --hccCCceEEEEec
Confidence 1347899988764
No 496
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=58.89 E-value=30 Score=34.31 Aligned_cols=47 Identities=28% Similarity=0.328 Sum_probs=36.1
Q ss_pred HHhcCCCCCEEEEEcCcc-cHHHHHHHHc-CC-cEEEEeCCHHHHHHHHH
Q 015990 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE 181 (397)
Q Consensus 135 ~~~~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~~vE~d~~~i~~a~~ 181 (397)
+...++++++||=.|+|. |.++..+++. |+ +|+++|.+++..+.+++
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 445678899999998753 5556666664 76 79999999998888865
No 497
>PRK12744 short chain dehydrogenase; Provisional
Probab=58.79 E-value=61 Score=29.98 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=44.5
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCC----HHHHHHHHHHhccC-CceEEEEccccccchhhhhhhHHhh
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKD----QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFER 211 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d----~~~i~~a~~~~~~~-~~v~ii~gD~~~~~~~~~~~~~~~~ 211 (397)
.+.+||=.|+ +|.++..+++ .|.+|+.+..+ .+..+...+.+... .++.++.+|+.+..-...+.+...
T Consensus 7 ~~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~- 84 (257)
T PRK12744 7 KGKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK- 84 (257)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH-
Confidence 3567888885 4556555554 57887777532 33333333333222 378889999877542211111111
Q ss_pred hcCCCCcceEeecCC
Q 015990 212 RKSSSGFAKVVANIP 226 (397)
Q Consensus 212 ~~~~~~~d~Vv~NlP 226 (397)
...+..|.+|.|.-
T Consensus 85 -~~~~~id~li~~ag 98 (257)
T PRK12744 85 -AAFGRPDIAINTVG 98 (257)
T ss_pred -HhhCCCCEEEECCc
Confidence 12246788887753
No 498
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=58.77 E-value=35 Score=32.71 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=37.7
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHh---ccCCceEEEEccccccc
Q 015990 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERF---ASIDQLKVLQEDFVKCH 200 (397)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~~vE~d~~~i~~a~~~~---~~~~~v~ii~gD~~~~~ 200 (397)
.+.+||=.| |+|.++..+++ .|.+|+++..+........... ...++++++.+|+.+..
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 68 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEG 68 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcc
Confidence 356788777 47888777665 4789999887754322222111 11247899999998753
No 499
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.76 E-value=73 Score=29.44 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=45.7
Q ss_pred CCEEEEEcCcc-cHH----HHHHHHcCCcEEEEeCC------------HHHHHHHHHHhcc-CCceEEEEccccccchhh
Q 015990 142 GDIVLEIGPGT-GSL----TNVLLNAGATVLAIEKD------------QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS 203 (397)
Q Consensus 142 ~~~VLEIG~G~-G~l----t~~La~~~~~V~~vE~d------------~~~i~~a~~~~~~-~~~v~ii~gD~~~~~~~~ 203 (397)
+++||=.|++. |.+ +..|++.|.+|+.++.+ ++... +.+.+.. ..++.++..|+.+..-..
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~ 83 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPYAPN 83 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 46788889742 334 44555668899999765 22222 2222222 236889999998754322
Q ss_pred hhhhHHhhhcCCCCcceEeecCC
Q 015990 204 HMLSLFERRKSSSGFAKVVANIP 226 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~d~Vv~NlP 226 (397)
...+.... ..+..|.||.|.-
T Consensus 84 ~~~~~~~~--~~g~id~vi~~ag 104 (256)
T PRK12748 84 RVFYAVSE--RLGDPSILINNAA 104 (256)
T ss_pred HHHHHHHH--hCCCCCEEEECCC
Confidence 11111111 2246788887753
No 500
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=58.62 E-value=75 Score=30.45 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=56.8
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCcEEEEeCCHHHHHHHHHHhccC----CceEEEEccccccchhh-hhhhHHhhh
Q 015990 141 EGDIVLEIGPGTG---SLTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRS-HMLSLFERR 212 (397)
Q Consensus 141 ~~~~VLEIG~G~G---~lt~~La~~~~~V~~vE~d~~~i~~a~~~~~~~----~~v~ii~gD~~~~~~~~-~~~~~~~~~ 212 (397)
.++.+|--|.+.| .++..|++.|++|+..+.+++..+...+..... +++..+.+|+.+.+..+ .+....+.
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~- 85 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK- 85 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH-
Confidence 4667777776554 456788888999999999999887766654322 36889999998654322 22222221
Q ss_pred cCCCCcceEeecCCC
Q 015990 213 KSSSGFAKVVANIPF 227 (397)
Q Consensus 213 ~~~~~~d~Vv~NlPy 227 (397)
..++.|.+|.|.-.
T Consensus 86 -~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 86 -FFGKIDILVNNAGA 99 (270)
T ss_pred -hCCCCCEEEEcCCc
Confidence 14678998888543
Done!