RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015990
(397 letters)
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 153 bits (387), Expect = 5e-44
Identities = 35/276 (12%), Positives = 77/276 (27%), Gaps = 51/276 (18%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNAGAT--V 166
+ G Y+ N + +++ + E VL++ PG G + + N
Sbjct: 11 LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 70
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA------- 219
+EK + + +F L++L+ D S+++ +
Sbjct: 71 SLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKF 129
Query: 220 KVVANIPFNISTDVIKQLL--------PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRP 271
VAN+ S +I Q L +++L + TA +L+
Sbjct: 130 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLL-ARPGMHSRSK 188
Query: 272 INIFVNFYSEPE---------------------YKFKVPRTNFFPQPKVDAAVVTFKLKQ 310
++ +++ + +P A+V
Sbjct: 189 CSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDP-- 246
Query: 311 ATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLC 346
++ + KR L + L
Sbjct: 247 ---IDFDFDVDNWDYVTRHLMILKRTPLNTVMDSLG 279
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 111 bits (278), Expect = 8e-29
Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 21/238 (8%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
QH + N I + + AA++ D+VLE+GPGTG++T LL V+A E D +V +
Sbjct: 1 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELH 60
Query: 181 ERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
+R +L+VL D +K + VAN+P+ IS+ + +L
Sbjct: 61 KRVQGTPVASKLQVLVGDVLKTDLPFFD--------------TCVANLPYQISSPFVFKL 106
Query: 238 LPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQP 297
L F +L+ Q E A + Y ++I + ++ KV + NF P P
Sbjct: 107 LLHRPFFRCAILMFQREFA-LRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPP 165
Query: 298 KVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKAL 355
KV+++VV + K P + + + +V F K K L + + +EK
Sbjct: 166 KVESSVVRIEPKN---PPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNY 220
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein
KsgA {Escherichia coli [TaxId: 562]}
Length = 252
Score = 107 bits (267), Expect = 1e-27
Identities = 54/234 (23%), Positives = 106/234 (45%), Gaps = 9/234 (3%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
Q+++ + + D + +A Q+G ++EIGPG +LT + + IE D+ + ++
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
+L + Q+D + + + + +V N+P+NIST ++ L
Sbjct: 61 THPFLGPKLTIYQQDAMTFNFGELAEKMGQP-------LRVFGNLPYNISTPLMFHLFSY 113
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
D +++ +LQ+E + + Y +++ +Y +VP + F P PKVD
Sbjct: 114 TDAIADMHFMLQKEVV-NRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 172
Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQHLCTSLEIEKA 354
+AVV +P V + + + AFN +RK +R SL +L + +
Sbjct: 173 SAVVRLVPHATMPHP-VKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGM 225
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
pneumoniae, Ermam [TaxId: 1313]}
Length = 245
Score = 103 bits (258), Expect = 3e-26
Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 21/229 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
Q+++ + ++ +Q+ ++E D V EIG G G LT L V +IE D H
Sbjct: 3 KNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L E+ ++ ++ +D ++ + K+V NIP+++ST +I
Sbjct: 63 LFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ------------RYKIVGNIPYHLSTQII 110
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
K+++ +++ + +R + + ++ + K+P F
Sbjct: 111 KKVVFESRASDIYLIVEEGFYK-------RTLDIHRTLGLLLHTQVSIQQLLKLPAECFH 163
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKMLRKSLQ 343
P+PKV++ ++ TD P K + VS N + + L Q
Sbjct: 164 PKPKVNSVLIKLTRHT-TDVP-DKYWKLYTYFVSKWVNREYRQLFTKNQ 210
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis,
Ermc' [TaxId: 1423]}
Length = 235
Score = 92.2 bits (228), Expect = 3e-22
Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 23/236 (9%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
Q+++ + D++ + E D + EIG G G T L+ V AIE D +
Sbjct: 1 QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
+ D +VL +D ++ + K+ NIP+NISTD+I++++
Sbjct: 61 NKLVDHDNFQVLNKDILQFKFPKNQ------------SYKIFGNIPYNISTDIIRKIVFD 108
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVD 300
I E+ L+++ A RL+ R + +F+ + VPR F P+PKV+
Sbjct: 109 -SIADEIYLIVEYGFAKRLLNT------KRSLALFLMAEVDISILSMVPREYFHPKPKVN 161
Query: 301 AAVVTFKLKQATDYPAVTSTKSFFSMVSSAFNGKRKML--RKSLQHLCTSLEIEKA 354
++++ K+ + + + V N + K + + + I+
Sbjct: 162 SSLIRLNRKK--SRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDDL 215
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 50.6 bits (120), Expect = 4e-08
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 5/148 (3%)
Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID 187
E+ + A + D+ +++G GTG +T L V AI+++ +
Sbjct: 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79
Query: 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEV 247
D V +L + I + +L P G I
Sbjct: 80 -----LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA 134
Query: 248 VLLLQEETALRLVEPSLRTSEYRPINIF 275
+LL + A+ + +NI
Sbjct: 135 ILLETKFEAMECLRDLGFDVNITELNIA 162
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 45.8 bits (107), Expect = 2e-06
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
+L AA++ + VL++ G G + N V+A + + ++
Sbjct: 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDIL 50
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 44.2 bits (103), Expect = 1e-05
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
H+ L + A + VL+IG G G + ++ + M
Sbjct: 2 HHSL-----GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEM 50
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 43.2 bits (101), Expect = 3e-05
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 12/152 (7%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFA--- 184
+ + + + GD VLE G G+G ++ L A V++ E + L ++ +
Sbjct: 88 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147
Query: 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI--PFNISTDVIKQLLPMGD 242
+L ++E +S S F V ++ P L G
Sbjct: 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 207
Query: 243 IFSEVVLLLQEETALRLVEPSLRTSEYRPINI 274
V ++ + L++ +RT E
Sbjct: 208 C---AVYVVNITQVIELLD-GIRTCELALSCE 235
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 41.9 bits (97), Expect = 6e-05
Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 14/176 (7%)
Query: 113 RFPRKSLGQHYMLN---SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLA 168
R S +H + N E L ++ G +L++G G+G + + G T
Sbjct: 2 RIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTG 61
Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
I+ + R E+ + + ++
Sbjct: 62 IDMSSLFTAQAKRRA----------EELGVSERVHFIHNDAAGYVANEKCDVAACVGATW 111
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
I+ + ++L E R + + ++ ++ +F + P
Sbjct: 112 IAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGL 167
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 41.7 bits (97), Expect = 1e-04
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEK 171
G H ML E+ + + + + +VL++G GTG L AGA V+ IE
Sbjct: 5 FGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEC 64
Query: 172 DQHM 175
Sbjct: 65 SSIS 68
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 40.0 bits (93), Expect = 2e-04
Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
+ ++ G +LE+G G+G++++ + LN T+ +E+D+ + + +
Sbjct: 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 39.9 bits (92), Expect = 4e-04
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
G H ML +I D + + + +VL++G GTG L+ AGA VL +++
Sbjct: 7 YGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQ 66
Query: 172 DQHMV 176
+ +
Sbjct: 67 SEILY 71
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 38.9 bits (89), Expect = 4e-04
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 3/83 (3%)
Query: 127 SEINDQLAA---AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183
SE+N L + V G VL G + L G V+ E + V
Sbjct: 3 SEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTER 62
Query: 184 ASIDQLKVLQEDFVKCHIRSHML 206
+ + V +
Sbjct: 63 GEQPHITSQGDFKVYAAPGIEIW 85
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 37.9 bits (87), Expect = 0.001
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 119 LGQHY-MLNSEI-----NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEK 171
G H ML + + + + + IVL++G GTG L+ GA V+ ++
Sbjct: 10 YGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM 69
Query: 172 DQHM 175
+
Sbjct: 70 SSII 73
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 37.6 bits (86), Expect = 0.002
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 11/144 (7%)
Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
+G +E L VL++ GTG + +L+ G +V +++ M+
Sbjct: 34 IGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY 93
Query: 179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238
+ + + + F K I ++ + V + L
Sbjct: 94 ALKERWN----RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI-----CLGNSFAHLP 144
Query: 239 PMGDIFSEVVLLLQEETALRLVEP 262
SE L L+ +V P
Sbjct: 145 DSKGDQSEHRLALKN--IASMVRP 166
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 36.8 bits (84), Expect = 0.002
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+LE+G G T+ L + +E +
Sbjct: 20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 54
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 36.6 bits (84), Expect = 0.002
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 132 QLAAAAA------VQEGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERF 183
+LAA ++ + VL +G +G+ + L + + A+E + E
Sbjct: 41 KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELV 100
Query: 184 ASIDQLKVLQEDFVKCH 200
+ + L D K
Sbjct: 101 RERNNIIPLLFDASKPW 117
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 35.7 bits (81), Expect = 0.007
Identities = 18/182 (9%), Positives = 51/182 (28%), Gaps = 23/182 (12%)
Query: 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL--------NAGATVLAIEKDQHMV 176
++ ++ + + +L IG G G + +L +E +
Sbjct: 24 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+E A I L+ ++ + K + + E+++ + + D
Sbjct: 84 AKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQK-WDFIHMIQMLYYVKD---- 138
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
+ LL + ++ S + + + + +F +
Sbjct: 139 ---IPATLKFFHSLLGTNAKMLIIVVS-------GSSGWDKLWKKYGSRFPQDDLCQYIT 188
Query: 297 PK 298
Sbjct: 189 SD 190
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 35.3 bits (80), Expect = 0.009
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERF 183
+ GD VL++G G G AG ++ + + R R
Sbjct: 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA 67
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 34.8 bits (79), Expect = 0.009
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 137 AAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193
+ EG L++G G+G LT + V+ I+ + +V +
Sbjct: 72 DQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV---RKDDPTL 128
Query: 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEV 247
+ + + ++ V A P + +I QL P G + V
Sbjct: 129 LSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAP-VVPQALIDQLKPGGRLILPV 181
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 34.7 bits (79), Expect = 0.018
Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 10/167 (5%)
Query: 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRER 182
L + +++GD +++G G G+ A E L +
Sbjct: 200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 259
Query: 183 FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGD 242
+ + + L + S S + + + + + N D +
Sbjct: 260 YEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFD-----EDLNK 314
Query: 243 IFSEVVLLLQEET---ALRLVEPSLRTSEYRPINIFVNFYSEPEYKF 286
+++ + +L+ + + + N Y
Sbjct: 315 KVEKILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDL 361
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA
methyltransferase {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 279
Score = 33.9 bits (76), Expect = 0.023
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQE-- 194
A G VL+ G+G V + G + + +++ + ++ +
Sbjct: 203 ALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDGLIDKAR 262
Query: 195 DFVKCHIRSHMLSLFER 211
+ ++ + +R
Sbjct: 263 SYEIVEGAANFGAALQR 279
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 224
Score = 33.6 bits (76), Expect = 0.027
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181
+ + + +G VLEIG G G T ++ V+++E ++ M +
Sbjct: 51 INTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASK 110
Query: 182 RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG 241
+ + +K++ D + V + +QL G
Sbjct: 111 LLSYYNNIKLILGDGTLGYEEEKPYDRVV-----------VWATAPTLLCKPYEQLKEGG 159
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 33.4 bits (76), Expect = 0.031
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ 188
Q+ + G VLE G G+G+LT LL A V++ E+ R +
Sbjct: 87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG 146
Query: 189 LKVLQEDFVKCHIRSH 204
V +
Sbjct: 147 QPPDNWRLVVSDLADS 162
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 32.8 bits (74), Expect = 0.052
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
++ +L +G G+ + + + V AIE ++ + + A + + + D
Sbjct: 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA 131
Query: 197 VKCH 200
K
Sbjct: 132 NKPQ 135
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 32.9 bits (74), Expect = 0.052
Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN--V 158
Y+ ++ + S + + ++ Q+ + + D+ +++G G G +
Sbjct: 111 YNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVA 170
Query: 159 LLNAGATVLAIEKDQHMVGLVRERFA 184
+EK
Sbjct: 171 AATNCKHHYGVEKADIPAKYAETMDR 196
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 32.4 bits (73), Expect = 0.076
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 131 DQLAAA-------AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVR 180
+L AA ++ G VL +G +G+ + + + + IE ++ +
Sbjct: 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 181 ERFASIDQLKVLQED 195
+ + D
Sbjct: 116 PIVEERRNIVPILGD 130
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 31.8 bits (71), Expect = 0.085
Identities = 12/121 (9%), Positives = 33/121 (27%), Gaps = 9/121 (7%)
Query: 141 EGDIVLEIGPGTGSLTNVL--LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198
+ I +E+G G G+ + + N + I+ + ++ ++ +
Sbjct: 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-------PNI 83
Query: 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
+ L + + + K+ L +L E +
Sbjct: 84 KLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIH 143
Query: 259 L 259
Sbjct: 144 F 144
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 197
Score = 31.6 bits (71), Expect = 0.099
Identities = 25/202 (12%), Positives = 53/202 (26%), Gaps = 33/202 (16%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGAT-VLAIE 170
+ L Q Y ++ G V++ G G G L GA V A +
Sbjct: 20 FKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFD 78
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D + + ++ + + + + + + + N PF
Sbjct: 79 IDPDAIETAKRNCGGVN------------FMVADVSEISGK------YDTWIMNPPFGSV 120
Query: 231 TDVI-KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
+ + S + + A + + + E + VP
Sbjct: 121 VKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARG--------DVFREEKVYITVP 172
Query: 290 RTNFF-PQPKVDAAVVTFKLKQ 310
R + V F ++
Sbjct: 173 RIYRHHSYDRARIEAVIFGVRN 194
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 29.7 bits (66), Expect = 0.46
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVR 180
+ + +++ A + ++V+++ G G L+ + G V+AIEKD + +
Sbjct: 88 IMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV 147
Query: 181 ERFASI---DQLKVLQEDFVKCH 200
E D++ D
Sbjct: 148 ENIHLNKVEDRMSAYNMDNRDFP 170
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA
methyltransferase {Proteus vulgaris [TaxId: 585]}
Length = 320
Score = 30.1 bits (66), Expect = 0.48
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 12/111 (10%)
Query: 88 SACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLE 147
+ + + Y A K + K R + D+V++
Sbjct: 206 NLLQISNSESNGQYLANCKLMGIKAHPARFPAKLPEFF---------IRMLTEPDDLVVD 256
Query: 148 IGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198
I G+ + V ++ E V R + +E
Sbjct: 257 IFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR---FLDNNISEEKITD 304
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 29.9 bits (66), Expect = 0.51
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
G + L I QL + VL+IG G G T+ +A + D
Sbjct: 64 GHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK 118
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 29.8 bits (66), Expect = 0.54
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 145 VLEIGPGTGSLTNVL---LNAGATVLAIEKDQHM 175
+++ G G G L VL L G+ I+ + +
Sbjct: 31 IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETL 64
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 29.6 bits (65), Expect = 0.59
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
D L++ GTG+LT L A++ Q M
Sbjct: 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEM 71
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 29.2 bits (64), Expect = 0.74
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
+ Y L +D LAAA V G L++G G G + L G V A +K+ + +
Sbjct: 10 TEKYGLTRTHSDVLAAAKVVAPGR-TLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANL 68
Query: 180 RERFA 184
A
Sbjct: 69 ERIKA 73
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis
[TaxId: 476]}
Length = 256
Score = 29.2 bits (64), Expect = 0.75
Identities = 10/64 (15%), Positives = 19/64 (29%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
H + A+ D+VL+ G+G+ V G + + + V
Sbjct: 191 LTHITPKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQA 250
Query: 180 RERF 183
Sbjct: 251 NFVL 254
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 28.1 bits (61), Expect = 1.6
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
E+ D + + A G VLE G A
Sbjct: 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREA 40
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 215
Score = 27.1 bits (59), Expect = 3.4
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKD 172
P + + + A ++ G +LE+G G+G ++ V IE+
Sbjct: 51 EPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERI 110
Query: 173 QHMVGLVRERFASIDQLKV 191
+V + V
Sbjct: 111 PELVEFAKRNLERAGVKNV 129
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 27.1 bits (59), Expect = 4.0
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
+ A G FP + + ++ N A VL + TG + V
Sbjct: 100 FLGRFTAFRHVGVFPEQIVHWEWLKN--------AVETADRPLKVLNLFGYTGVASLVAA 151
Query: 161 NAGATVLAIEKDQHMVGLVRERFA----SIDQLKVLQEDFVKC 199
AGA V ++ + +G +E ++ + ED +K
Sbjct: 152 AAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF 194
>d2awia2 a.118.8.4 (A:71-301) PrgX {Enterococcus faecalis [TaxId:
1351]}
Length = 231
Score = 26.8 bits (59), Expect = 4.1
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 201 IRSHMLSLFERRKSSSGF-AKVVANI----PFNISTDVIKQLLPMGDIFSEVVLLLQEET 255
I S + L+++R + G ++V+N+ P+ + +IK + P+ D F + L +
Sbjct: 64 ITSDLKHLYDKRTTFFGIDCEIVSNLLNVLPYEEVSSIIKPMYPIVDSFGKDYDLTIQTV 123
Query: 256 ALRLVEPSLRTSEYRPINIFVNFYSE----PEYKFK 287
+ S+ + ++N +
Sbjct: 124 LKNALTISIMNRNLKEAQYYINQFEHLKTIKNISIN 159
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
{Thermotoga maritima [TaxId: 2336]}
Length = 332
Score = 26.9 bits (59), Expect = 4.6
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 21/85 (24%)
Query: 255 TALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDY 314
T +R +E R E + + P ++FK+ VDA V F L ++T
Sbjct: 247 TTVRTLETIARLPEQEEYVGKTDLFIYPPFEFKL----------VDALVTNFHLPRST-- 294
Query: 315 PAVTSTKSFFSMVSSAFNGKRKMLR 339
+V +AF GK ++
Sbjct: 295 --------LLMLV-AAFAGKDFVME 310
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+++ A +E VL++ GTG T L G V+ ++ + M
Sbjct: 31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEM 75
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
INMT {Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 26.6 bits (57), Expect = 4.8
Identities = 5/50 (10%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFA 184
+GD +++IG G + + + + +
Sbjct: 46 GPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLK 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.378
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,354,880
Number of extensions: 60222
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 44
Length of query: 397
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,213,086
Effective search space: 376056660
Effective search space used: 376056660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)