BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015997
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With Mg2+ And L-glutamate
Length = 449
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/340 (90%), Positives = 321/340 (94%)
Query: 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99
AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE TL PMKY+QIA
Sbjct: 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIA 60
Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 159
ELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL
Sbjct: 61 ELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 120
Query: 160 YQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTV 219
YQVKAVAEEMGIGFLG+GFQPKW +DIP MPKGRY+IMRNYMPKVGSLGLDMM RTCTV
Sbjct: 121 YQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTV 180
Query: 220 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG 279
QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTDTD +R G
Sbjct: 181 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTG 240
Query: 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLN 339
MLPFVFDDSFGFEQYVDYALDVPMYF YR KY+DC GM+FR FLAGKLPCLPGELPT N
Sbjct: 241 MLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYN 300
Query: 340 DWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWV 379
DWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFWV
Sbjct: 301 DWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWV 340
>pdb|2GWC|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|B Chain B, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|C Chain C, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|D Chain D, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|E Chain E, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|F Chain F, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|G Chain G, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|H Chain H, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
Length = 449
Score = 601 bits (1550), Expect = e-172, Method: Compositional matrix adjust.
Identities = 294/340 (86%), Positives = 305/340 (89%)
Query: 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99
AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE TL P KY+QIA
Sbjct: 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPXKYDQIA 60
Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 159
ELLNSIAERF+WEKV EGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL
Sbjct: 61 ELLNSIAERFEWEKVXEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 120
Query: 160 YQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTV 219
YQVKAVAEE GIGFLG GFQPKW +DIP PKGRY+I RNY PKVGSLGLD RTCTV
Sbjct: 121 YQVKAVAEEXGIGFLGXGFQPKWRREDIPTXPKGRYDIXRNYXPKVGSLGLDXXLRTCTV 180
Query: 220 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG 279
QVNLDFSSEAD IRKFRAGLALQPIATALFANSPFTEGKPNG+LS RSHIWTDTD +R G
Sbjct: 181 QVNLDFSSEADXIRKFRAGLALQPIATALFANSPFTEGKPNGFLSXRSHIWTDTDKDRTG 240
Query: 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLN 339
LPFVFDDSFGFEQYVDYALDVP YF YR KY+DC G +FR FLAGKLPCLPGELPT N
Sbjct: 241 XLPFVFDDSFGFEQYVDYALDVPXYFAYRNGKYVDCTGXTFRQFLAGKLPCLPGELPTYN 300
Query: 340 DWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWV 379
DWENHLTTIFPEVRLKRY E RGADGGPWRRLCALPAFWV
Sbjct: 301 DWENHLTTIFPEVRLKRYXEXRGADGGPWRRLCALPAFWV 340
>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From
Yersinia Pestis
Length = 352
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 290 GFEQYVDYALDVPMYFVYRKKKYIDCAGMSFR---------DFLAGKLPCLPGELPTLND 340
G VD V + K++ D AG+ DFL K G L +
Sbjct: 91 GKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVY 150
Query: 341 WENHLTTIFPEVRLKRYLEMRGADGGPWRRL 371
+E+H PE+R +R+ E GA GG W L
Sbjct: 151 FESHFDRYRPEIR-QRWREQAGAGGGIWYDL 180
>pdb|1DAB|A Chain A, The Structure Of Bordetella Pertussis Virulence Factor
P.69 Pertactin
Length = 539
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 209 GLDMMFRTCTVQVNLDFSSEADMIRKFRA-------GLALQPIATALFANSPFTEG-KPN 260
G +++R V L + AD A G ++ P+ AL + + +T +
Sbjct: 337 GKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAV 396
Query: 261 GYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQ 293
LS+ + W TDN+ G L D S F+Q
Sbjct: 397 DSLSIDNATWVMTDNSNVGALRLASDGSVDFQQ 429
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 86 EFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPL 145
+F T+ P ++E AE+L + + +Y +GL K ISL+ G F G
Sbjct: 182 DFHTIKPNRHE--AEILAGFPITDTDDLIKASNYFLGLGIKKVFISLDADGIFYNDGV-- 237
Query: 146 ETLHQTCAEVNSHLYQVKAV--AEEMGIGFLGIGFQPKWGLKDI 187
+C ++ + VK V A + + LG G+ K ++DI
Sbjct: 238 -----SCGKIKATEVDVKNVTGAGDSFVAGLGYGYXNKXPIEDI 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,141,173
Number of Sequences: 62578
Number of extensions: 524953
Number of successful extensions: 924
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 5
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)