BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015998
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 9/150 (6%)
Query: 8 GFRFHPTEEEIISYFLERKMCGLDFPAHTIADVVDVCKYEPWDLPQRSRMPKEDRVWYFF 67
GFRF+PT+EE++ +L RK G DF IA++ D+ K++PW LP ++ +++ WYFF
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76
Query: 68 NALVSKSPNSKLVNRQTNSGFWKPTGKDRVIWDEQGKKIGFKKNLVFHTGRAKNGIRTNW 127
+ K PN NR SG+WK TG D++I +G+++G KK LVF+ G+A G +TNW
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAPKGTKTNW 135
Query: 128 VMHEYH-----SQNASSYSKEFVLLRLKKK 152
+MHEY +N S+ ++VL R+ KK
Sbjct: 136 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 9/150 (6%)
Query: 8 GFRFHPTEEEIISYFLERKMCGLDFPAHTIADVVDVCKYEPWDLPQRSRMPKEDRVWYFF 67
GFRF+PT+EE++ +L RK G DF IA++ D+ K++PW LP ++ +++ WYFF
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 79
Query: 68 NALVSKSPNSKLVNRQTNSGFWKPTGKDRVIWDEQGKKIGFKKNLVFHTGRAKNGIRTNW 127
+ K PN NR SG+WK TG D++I +G+++G KK LVF+ G+A G +TNW
Sbjct: 80 SPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAPKGTKTNW 138
Query: 128 VMHEYH-----SQNASSYSKEFVLLRLKKK 152
+MHEY +N S+ ++VL R+ KK
Sbjct: 139 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 168
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 8 GFRFHPTEEEIISYFLERKMCGLDFPAHTIADVVDVCKYEPWDLPQRSRMPKEDRVWYFF 67
GFRFHPT++E++ ++L RK G P IA+V D+ K++PWDLP+R+ R WYFF
Sbjct: 18 GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALF--GAREWYFF 74
Query: 68 NALVSKSPNSKLVNRQTNSGFWKPTGKDRVIWDEQGKKIGFKKNLVFHTGRAKNGIRTNW 127
K PN NR +G+WK TG D+ + +G+ +G KK LVF+ G+A G++T+W
Sbjct: 75 TPRDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAGKAPRGVKTDW 133
Query: 128 VMHEYH 133
+MHEY
Sbjct: 134 IMHEYR 139
>pdb|2WGY|A Chain A, Crystal Structure Of The G243a Mutant Of Cyp130 From M.
Tuberculosis
Length = 413
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 171 DSGNGAIGNTNPQINRDLPEELQLLLSNPELDYSHLAEVLSNIQPAQGTSINSKHGTSYS 230
D+ G +G + P ++R P++ +LLL +PE + E+L P QG + + +
Sbjct: 252 DTVTGMLGGSMPLLHRR-PDQRRLLLDDPEGIPDAVEELLRLTSPVQGLARTTTRDVTIG 310
Query: 231 D 231
D
Sbjct: 311 D 311
>pdb|2UUQ|A Chain A, Crystal Structure Of Cyp130 From Mycobacterium
Tuberculosis In The Ligand-Free Form
pdb|2UVN|A Chain A, Crystal Structure Of Econazole-Bound Cyp130 From
Mycobacterium Tuberculosis
pdb|2UVN|B Chain B, Crystal Structure Of Econazole-Bound Cyp130 From
Mycobacterium Tuberculosis
Length = 414
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 171 DSGNGAIGNTNPQINRDLPEELQLLLSNPELDYSHLAEVLSNIQPAQGTSINSKHGTSYS 230
D+ G +G + P ++R P++ +LLL +PE + E+L P QG + + +
Sbjct: 253 DTVTGMLGGSMPLLHRR-PDQRRLLLDDPEGIPDAVEELLRLTSPVQGLARTTTRDVTIG 311
Query: 231 D 231
D
Sbjct: 312 D 312
>pdb|2WH8|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|B Chain B, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|C Chain C, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|D Chain D, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WHF|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
Length = 413
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 171 DSGNGAIGNTNPQINRDLPEELQLLLSNPELDYSHLAEVLSNIQPAQGTSINSKHGTSYS 230
D+ G +G + P ++R P++ +LLL +PE + E+L P QG + + +
Sbjct: 252 DTVTGMLGGSMPLLHRR-PDQRRLLLDDPEGIPDAVEELLRLTSPVQGLARTTTRDVTIG 310
Query: 231 D 231
D
Sbjct: 311 D 311
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 20/132 (15%)
Query: 128 VMHEYHSQNASSYSKEFVLLRLKKKSG--DKPDACNEPTPQP----SAFDSGNGAIGNTN 181
+++E+ Q YS + +LLRL K + D PT +P + SG G+T
Sbjct: 84 LLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASG---WGSTT 140
Query: 182 PQINRDLPEELQL----LLSNPELDYSHLAEVLSNIQPA---QGTSINSKH---GTSYSD 231
P I P++LQ LL N + D +H +V + A G S +H G D
Sbjct: 141 P-IKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICD 199
Query: 232 GFNDELETSGQE 243
G + + G E
Sbjct: 200 GILQGITSWGPE 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,796,620
Number of Sequences: 62578
Number of extensions: 555274
Number of successful extensions: 789
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 12
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)