Query 015998
Match_columns 397
No_of_seqs 196 out of 898
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.6E-55 1.2E-59 399.8 15.2 147 4-154 14-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.3E-54 4.6E-59 394.9 13.1 148 4-155 16-168 (171)
3 1ldd_A APC2WHB, anaphase promo 20.3 43 0.0015 26.2 1.7 28 5-33 36-64 (74)
4 1cmb_A Met APO-repressor; DNA- 14.5 1.7E+02 0.0057 24.0 3.9 39 12-55 50-88 (104)
5 3rhf_A Putative polyphosphate 7.5 66 0.0023 31.2 -0.9 26 6-31 101-130 (289)
6 3cpr_A Dihydrodipicolinate syn 7.2 1.3E+02 0.0046 28.4 1.1 18 5-23 118-135 (304)
7 3dz1_A Dihydrodipicolinate syn 7.2 1.6E+02 0.0056 28.0 1.7 17 5-23 109-125 (313)
8 1f6k_A N-acetylneuraminate lya 7.1 1.5E+02 0.0053 27.7 1.5 18 5-23 106-123 (293)
9 3fkr_A L-2-keto-3-deoxyarabona 7.1 1.9E+02 0.0064 27.5 2.1 18 5-23 110-130 (309)
10 2ehh_A DHDPS, dihydrodipicolin 7.0 1.6E+02 0.0054 27.7 1.5 18 5-23 102-119 (294)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.6e-55 Score=399.76 Aligned_cols=147 Identities=42% Similarity=0.840 Sum_probs=133.0
Q ss_pred CCCCCcEECCChHHHHHHHHHHHHcCCCCCCcceeccCcCCCCCCCCCCccCCCCCCCceEEEeeccccCCCCCCccccc
Q 015998 4 HGVVGFRFHPTEEEIISYFLERKMCGLDFPAHTIADVVDVCKYEPWDLPQRSRMPKEDRVWYFFNALVSKSPNSKLVNRQ 83 (397)
Q Consensus 4 ~LPpGFRF~PTDEELI~~YLr~Ki~G~pl~~~~I~e~vDVY~~ePWdLP~~~~~g~~d~eWYFFspr~rKy~nG~R~nRa 83 (397)
.|||||||+|||||||.|||++|+.|.+++..+|++ +|||++|||+||+.+..+ +.+|||||++++||++|.|+||+
T Consensus 14 ~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~e-vDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAE-VDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEE-CCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCEE
T ss_pred CCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeee-cccccCCchhhhhhhccC--CceEEEEeccccccCCCCCceee
Confidence 799999999999999999999999999999999999 999999999999988765 78999999999999999999999
Q ss_pred cCCceEeecCCCeeEEcCCCceEeeEEEEEeeeCcCCCCCCcCeEEEEEEeCCCC----------CCCCceEEEEEEEcC
Q 015998 84 TNSGFWKPTGKDRVIWDEQGKKIGFKKNLVFHTGRAKNGIRTNWVMHEYHSQNAS----------SYSKEFVLLRLKKKS 153 (397)
Q Consensus 84 tggG~WKatG~~k~I~~~~g~~IG~KKtLvFy~Gr~p~G~KT~WvMhEYrL~~~~----------~~~~d~VLCRVykK~ 153 (397)
|++||||+||++++|... |.+||+||+|+||.|++|+|.||+|+||||+|.... ...++|||||||+|+
T Consensus 91 t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp ETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred cCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 999999999999999875 678999999999999999999999999999999864 135799999999986
Q ss_pred C
Q 015998 154 G 154 (397)
Q Consensus 154 ~ 154 (397)
.
T Consensus 170 ~ 170 (174)
T 3ulx_A 170 N 170 (174)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.3e-54 Score=394.85 Aligned_cols=148 Identities=43% Similarity=0.826 Sum_probs=129.6
Q ss_pred CCCCCcEECCChHHHHHHHHHHHHcCCCCCCcceeccCcCCCCCCCCCCccCCCCCCCceEEEeeccccCCCCCCccccc
Q 015998 4 HGVVGFRFHPTEEEIISYFLERKMCGLDFPAHTIADVVDVCKYEPWDLPQRSRMPKEDRVWYFFNALVSKSPNSKLVNRQ 83 (397)
Q Consensus 4 ~LPpGFRF~PTDEELI~~YLr~Ki~G~pl~~~~I~e~vDVY~~ePWdLP~~~~~g~~d~eWYFFspr~rKy~nG~R~nRa 83 (397)
.|||||||+|||||||.|||++|+.|.+++..+|++ +|||++|||+||+.+..+ +.+|||||++++||++|.|+||+
T Consensus 16 ~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e-~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAE-IDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp CCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEE-CCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCEE
T ss_pred CCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEee-cccccCChhHhhchhhcC--CccEEEEeccccccCCCCccccc
Confidence 799999999999999999999999999999999999 999999999999988765 78999999999999999999999
Q ss_pred cCCceEeecCCCeeEEcCCCceEeeEEEEEeeeCcCCCCCCcCeEEEEEEeCCCC-----CCCCceEEEEEEEcCCC
Q 015998 84 TNSGFWKPTGKDRVIWDEQGKKIGFKKNLVFHTGRAKNGIRTNWVMHEYHSQNAS-----SYSKEFVLLRLKKKSGD 155 (397)
Q Consensus 84 tggG~WKatG~~k~I~~~~g~~IG~KKtLvFy~Gr~p~G~KT~WvMhEYrL~~~~-----~~~~d~VLCRVykK~~~ 155 (397)
|++||||+||++++|... +.+||+||+|+||.|++|+|.||+|+||||+|.... ...++|||||||+|+..
T Consensus 93 t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred CCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999999999984 477999999999999999999999999999999874 34689999999999754
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=20.27 E-value=43 Score=26.19 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=23.1
Q ss_pred CCCCcEECC-ChHHHHHHHHHHHHcCCCCC
Q 015998 5 GVVGFRFHP-TEEEIISYFLERKMCGLDFP 33 (397)
Q Consensus 5 LPpGFRF~P-TDEELI~~YLr~Ki~G~pl~ 33 (397)
.|.|+.|.. |++||-. ||-+|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 377999998 9999987 899999887643
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=14.55 E-value=1.7e+02 Score=24.02 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCcceeccCcCCCCCCCCCCccC
Q 015998 12 HPTEEEIISYFLERKMCGLDFPAHTIADVVDVCKYEPWDLPQRS 55 (397)
Q Consensus 12 ~PTDEELI~~YLr~Ki~G~pl~~~~I~e~vDVY~~ePWdLP~~~ 55 (397)
|-|--||++.-...-..|+|+|.+ .|+-+..|.++|..+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D-----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD-----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG-----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc-----hhhhhcCCccchHHH
Confidence 567889988777788899999975 699999999999754
No 5
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=7.54 E-value=66 Score=31.18 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCCcEEC----CChHHHHHHHHHHHHcCCC
Q 015998 6 VVGFRFH----PTEEEIISYFLERKMCGLD 31 (397)
Q Consensus 6 PpGFRF~----PTDEELI~~YLr~Ki~G~p 31 (397)
|-|||.+ ||++|+-..||.+-....|
T Consensus 101 PRg~~V~a~~~Pt~eE~~~~ylwR~~~~lP 130 (289)
T 3rhf_A 101 PQGVQLTAFKAPTDEEKSHDFLWRIEKQVP 130 (289)
T ss_dssp GGGEEEEECCSCCHHHHTSCTTHHHHTTCC
T ss_pred cCceEEEECCCCChhhhcCCHHHHHHHhCC
Confidence 6677775 9999999999998776554
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=7.25 E-value=1.3e+02 Score=28.43 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.2
Q ss_pred CCCCcEECCChHHHHHHHH
Q 015998 5 GVVGFRFHPTEEEIISYFL 23 (397)
Q Consensus 5 LPpGFRF~PTDEELI~~YL 23 (397)
+|| |.|.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 458899999999873
No 7
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=7.16 E-value=1.6e+02 Score=27.96 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=13.2
Q ss_pred CCCCcEECCChHHHHHHHH
Q 015998 5 GVVGFRFHPTEEEIISYFL 23 (397)
Q Consensus 5 LPpGFRF~PTDEELI~~YL 23 (397)
+||- |.||+++|+.||-
T Consensus 109 ~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFR 125 (313)
T ss_dssp CCCT--TCCSHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHH
Confidence 5664 5599999999874
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=7.12 E-value=1.5e+02 Score=27.74 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=13.6
Q ss_pred CCCCcEECCChHHHHHHHH
Q 015998 5 GVVGFRFHPTEEEIISYFL 23 (397)
Q Consensus 5 LPpGFRF~PTDEELI~~YL 23 (397)
+||- .|.||+++|+.||-
T Consensus 106 ~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 3554 48899999999874
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=7.06 E-value=1.9e+02 Score=27.50 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=14.2
Q ss_pred CCCCcE---ECCChHHHHHHHH
Q 015998 5 GVVGFR---FHPTEEEIISYFL 23 (397)
Q Consensus 5 LPpGFR---F~PTDEELI~~YL 23 (397)
+|| |. |.||+++|+.||-
T Consensus 110 ~~P-yy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 110 MPP-YHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp CCS-CBTTTBCCCHHHHHHHHH
T ss_pred cCC-CCccCCCCCHHHHHHHHH
Confidence 566 44 7899999999873
No 10
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=6.98 E-value=1.6e+02 Score=27.68 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=13.8
Q ss_pred CCCCcEECCChHHHHHHHH
Q 015998 5 GVVGFRFHPTEEEIISYFL 23 (397)
Q Consensus 5 LPpGFRF~PTDEELI~~YL 23 (397)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHFK 119 (294)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 355 447899999999873
Done!