BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015999
(397 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 281/406 (69%), Positives = 308/406 (75%), Gaps = 34/406 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEI+VKPED V DVK NIE QG+DVYPASQQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTNFEIDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRP-KLQVLRLLPRHNQRLHLRL---- 115
ENKVAENSF+V+ML+K +V P P + Q LP +
Sbjct: 61 ENKVAENSFIVIMLSK----RKVSPSGGSTASSAPPSQAQPASTLPPSATQPSTTAQAPA 116
Query: 116 ----LHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATV 171
L Q +N + S +D+YGQAASNLVAGSNLEATV
Sbjct: 117 VTAELPQSAAESTPVVN-----------------PVSSETDIYGQAASNLVAGSNLEATV 159
Query: 172 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 231
QQILDMGGGSWDRETV RALRAA+NNPERAVEYLYSGIPEQ V P+ RA + GQA P
Sbjct: 160 QQILDMGGGSWDRETVARALRAAFNNPERAVEYLYSGIPEQPEVQPLPRAPSSGQAAIPS 219
Query: 232 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 291
A AQ+PAAP + G NANPLDLFPQGLP +GS AGTLDFLRNSQQFQALR MVQAN
Sbjct: 220 AT--AQEPAAPT-SGGANANPLDLFPQGLPTIGSTTSAGTLDFLRNSQQFQALRAMVQAN 276
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 351
PQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE G+GN+LGQLASA+PQ+V+VTP
Sbjct: 277 PQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVE-GDGNLLGQLASAVPQSVSVTP 335
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EEREAIERLEAMGFDRA+VLEVFFACNKNEELAANYLLDHMH+FE+
Sbjct: 336 EEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHDFEE 381
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 278/398 (69%), Positives = 307/398 (77%), Gaps = 18/398 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTK-VIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQL 119
EN+VAE+SFVV+ML+K + Q +P V P NQ
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQP---VSSSPPTSNQP--------- 108
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
++ L ++ + + S SD+YGQAASNLVAG+NLE T+QQILDMGG
Sbjct: 109 --STAPQAPVVALPEVIPEPAPAVAPSISSDSDIYGQAASNLVAGNNLEVTIQQILDMGG 166
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
GSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q Q P
Sbjct: 167 GSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA-PQGP 225
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
+SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS QFQALR MVQANPQILQPML
Sbjct: 226 QTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSPQFQALRAMVQANPQILQPML 285
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 359
QELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQL + +PQAVT+TPEERE+IER
Sbjct: 286 QELGKQNPHLMRLIQEHQADFLRLINEPVE-GEGNVLGQLGT-VPQAVTITPEERESIER 343
Query: 360 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 344 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFEE 381
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 270/397 (68%), Positives = 299/397 (75%), Gaps = 15/397 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLI GKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKVAENSFV V++ + G Q + P + + +
Sbjct: 61 ENKVAENSFV-VIMLSKNKVSTSGTSATQPAPSNSAQ-------PATSTGQPTQTVAPQA 112
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+++ + ++DVYGQAASNLVAGS LE TVQQILDMGGG
Sbjct: 113 TAASVAPAQSAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGG 172
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
SW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A AS GQA NPP QA QPA
Sbjct: 173 SWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPAS--GQAVNPP--VQASQPA 228
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
P + GPNANPLDLFPQGLPN+GSN GAG LDFL NS QFQALR MVQANPQILQPMLQ
Sbjct: 229 VP--SGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQILQPMLQ 286
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 360
ELGKQNP LMRLIQEHQ DFLRLINEPVE GEGNV GQ A A+PQAVTVTPEEREAIERL
Sbjct: 287 ELGKQNPQLMRLIQEHQADFLRLINEPVE-GEGNVPGQPAGAIPQAVTVTPEEREAIERL 345
Query: 361 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EAMGFDRALVL+VFFAC KNEE+AANYLLDHMHEF++
Sbjct: 346 EAMGFDRALVLQVFFACXKNEEMAANYLLDHMHEFDE 382
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 259/398 (65%), Positives = 288/398 (72%), Gaps = 38/398 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTK-VIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQL 119
EN+VAE+SFVV+ML+K + Q +P V P NQ
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQP---VSSSPPTSNQP--------- 108
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
++ L ++ + + S SD+YGQAASNLVAG+NLE T+QQILDMGG
Sbjct: 109 --STAPQAPVVALPEVIPEPAPAVAPSISSDSDIYGQAASNLVAGNNLEVTIQQILDMGG 166
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
GSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q Q P
Sbjct: 167 GSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA-PQGP 225
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
+SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS
Sbjct: 226 QTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSP-------------------- 265
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 359
QELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQL + +PQAVT+TPEERE+IER
Sbjct: 266 QELGKQNPHLMRLIQEHQADFLRLINEPVE-GEGNVLGQLGT-VPQAVTITPEERESIER 323
Query: 360 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 324 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFEE 361
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/250 (87%), Positives = 231/250 (92%), Gaps = 4/250 (1%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S +D YGQAASNLVAG+N E +QQILDMGGG+WDR+TV+RALRAAYNNPERAVEYLYSG
Sbjct: 151 SETDAYGQAASNLVAGNNFEEAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 210
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-A 267
IPEQ VPPVARA A GQA NPPAQ+Q QP PAP+SGPNANPLDLFPQG+PN+GSN A
Sbjct: 211 IPEQAEVPPVARAPASGQAANPPAQSQ--QPV-PAPSSGPNANPLDLFPQGIPNVGSNPA 267
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GAGTLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNP LMRLIQEHQ DFLRLINEP
Sbjct: 268 GAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEP 327
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
VEGGEGN+LGQLA+AMPQAVTVTPEEREAI RLEAMGFDRALVLEVFFACNKNEELAANY
Sbjct: 328 VEGGEGNILGQLAAAMPQAVTVTPEEREAIARLEAMGFDRALVLEVFFACNKNEELAANY 387
Query: 388 LLDHMHEFED 397
LLDHMHEFED
Sbjct: 388 LLDHMHEFED 397
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEI+VKPED V+DVK NIE VQGSDVYPASQQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLD 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSFVVVML+K
Sbjct: 61 ENKVAENSFVVVMLSK 76
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/251 (86%), Positives = 230/251 (91%), Gaps = 4/251 (1%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S +DVYGQAASNLVAGSNLEA +QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSG
Sbjct: 187 SETDVYGQAASNLVAGSNLEAIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSG 246
Query: 209 IPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
IPEQ VPPV R A GGQ NPPAQ+Q QQPA APTSGPNANPLDLFPQGLPN+GSN
Sbjct: 247 IPEQAEVPPVTRPPASGGQPTNPPAQSQ-QQPAV-APTSGPNANPLDLFPQGLPNVGSNT 304
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GAGTLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEP
Sbjct: 305 GAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEP 364
Query: 328 VEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
VEGGE GN++ QLA +PQA+ VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN
Sbjct: 365 VEGGEGGNIINQLAGGVPQAIQVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 424
Query: 387 YLLDHMHEFED 397
YLLDH+HEF++
Sbjct: 425 YLLDHIHEFDE 435
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIETVQ DVYPA+QQMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQSPDVYPAAQQMLIHQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSF+V+ML+K
Sbjct: 61 ENKVAENSFIVIMLSK 76
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/249 (84%), Positives = 224/249 (89%), Gaps = 3/249 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD+YGQAASNLVAGSNLE T+QQILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIP
Sbjct: 153 SDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIP 212
Query: 211 EQTAVPPVARASAGGQAGNPPAQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-G 268
EQ PPV A Q NPPA T QA QPA+ P+SGPNANPLDLFPQGLPN+GS A G
Sbjct: 213 EQAEAPPVTGVPASAQPSNPPADTPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAG 271
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
AG+LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPV
Sbjct: 272 AGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPV 331
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EGGEGN+LGQLA MPQAVTVTPEER+AIERLEAMGFDRA VLEV+FACNKNEELAANYL
Sbjct: 332 EGGEGNILGQLAGTMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYL 391
Query: 389 LDHMHEFED 397
LDHMHEF++
Sbjct: 392 LDHMHEFDE 400
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 72/77 (93%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKV 77
ENKVAE+SF+V+ML+K
Sbjct: 61 ENKVAESSFIVIMLSKT 77
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/249 (84%), Positives = 224/249 (89%), Gaps = 3/249 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD+YGQAASNLVAGSNLE T+QQILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIP
Sbjct: 135 SDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIP 194
Query: 211 EQTAVPPVARASAGGQAGNPPAQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-G 268
EQ PV A Q NPPA T QA QPA+ P+SGPNANPLDLFPQGLPN+GS A G
Sbjct: 195 EQAEALPVTGVPASAQPSNPPADTPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAG 253
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
AG+LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPV
Sbjct: 254 AGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPV 313
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EGGEGN+LGQLA AMPQAVTVTPEER+AIERLEAMGFDRA VLEV+FACNKNEELAANYL
Sbjct: 314 EGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYL 373
Query: 389 LDHMHEFED 397
LDHMHEF++
Sbjct: 374 LDHMHEFDE 382
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAE+SF+V+ML+K
Sbjct: 61 ENKVAESSFIVIMLSK 76
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/249 (83%), Positives = 224/249 (89%), Gaps = 3/249 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD+YGQAASNLVAGSNLE T+QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIP
Sbjct: 154 SDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIP 213
Query: 211 EQTAVPPVARASAGGQAGNPPAQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-G 268
EQ P VARA Q NPPA Q QPAA ++GPNANPLDLFPQGLPN+GS A G
Sbjct: 214 EQAEAPLVARAPVSAQPTNPPADAPQTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAG 272
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
AG+LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP
Sbjct: 273 AGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPA 332
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EGGEGN+LGQ+AS MPQAVTVTPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAANYL
Sbjct: 333 EGGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYL 392
Query: 389 LDHMHEFED 397
LDHMHEFE+
Sbjct: 393 LDHMHEFEE 401
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 73/76 (96%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAEN+F+V+ML+K
Sbjct: 61 ENKVAENTFIVIMLSK 76
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/404 (57%), Positives = 276/404 (68%), Gaps = 21/404 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIE +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIEAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQ-RLHLRLLHQL 119
+N + EN F+VVMLTK VG ++P P N + ++ QL
Sbjct: 61 DNTITENGFLVVMLTKSKTSSAVGASSTSTASTVQPTQTSTPPAPASNPVEVASPVVSQL 120
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
+ + + +D YG+AAS LVAGSNLE T+QQ+LDMGG
Sbjct: 121 PAVA-----------PAASVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQMLDMGG 169
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARA-----SAGGQAGNPPAQ 233
GSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR+ A Q N
Sbjct: 170 GSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNPGATDQGTNNVIA 229
Query: 234 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 293
++ A AP+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+ QFQALRTMVQANPQ
Sbjct: 230 GESDSAEATAPSGGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNPQFQALRTMVQANPQ 289
Query: 294 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 353
ILQPMLQEL KQNP LMRLIQ+HQ +FL LINE +G++LGQ A+ MPQ++ VTPEE
Sbjct: 290 ILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEET---DGDLLGQFAAEMPQSINVTPEE 346
Query: 354 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
REAIERLEAMGFDRALV+E F AC+KNEELAANYLL+H ++ED
Sbjct: 347 REAIERLEAMGFDRALVIEAFLACDKNEELAANYLLEHAADYED 390
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/249 (83%), Positives = 224/249 (89%), Gaps = 3/249 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD+YGQAASNLVAGSNLE T+QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIP
Sbjct: 133 SDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIP 192
Query: 211 EQTAVPPVARASAGGQAGNPPAQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-G 268
EQ P VARA Q NPPA Q QPAA ++GPNANPLDLFPQGLPN+GS A G
Sbjct: 193 EQAEAPLVARAPVSAQPTNPPADAPQTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAG 251
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
AG+LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP
Sbjct: 252 AGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPA 311
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EGGEGN+LGQ+AS MPQAVTVTPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAANYL
Sbjct: 312 EGGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYL 371
Query: 389 LDHMHEFED 397
LDHMHEFE+
Sbjct: 372 LDHMHEFEE 380
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 73/77 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKV 77
ENKVAEN+F+V+ML+K
Sbjct: 61 ENKVAENTFIVIMLSKT 77
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/249 (82%), Positives = 224/249 (89%), Gaps = 3/249 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD+YGQAASNLVAGSNLE T+QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIP
Sbjct: 160 SDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIP 219
Query: 211 EQTAVPPVARASAGGQAGNPPAQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-G 268
EQ P VA+ A Q NPPA Q QPA P ++GPNANPLDLFPQGLPN+GS A G
Sbjct: 220 EQAEAPLVAQVPASAQPTNPPADAPQTAQPA-PVTSAGPNANPLDLFPQGLPNVGSGAAG 278
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
AG+LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP
Sbjct: 279 AGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPA 338
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG EGN+LGQ+ASAMPQAVTVTPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAANYL
Sbjct: 339 EGAEGNILGQMASAMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYL 398
Query: 389 LDHMHEFED 397
LDHMHEFE+
Sbjct: 399 LDHMHEFEE 407
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV EN+F+V+ML+K
Sbjct: 61 ENKVVENTFIVIMLSK 76
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/254 (83%), Positives = 228/254 (89%), Gaps = 8/254 (3%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+RALRAA+NNPERAVEYLY+G
Sbjct: 167 SQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYTG 226
Query: 209 IPEQTAVPPVARASAG-GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
IPEQ VPPVARA A GQ NP AQTQ QPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 227 IPEQAEVPPVARAPASFGQPANPSAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGGNP 283
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GAGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEP
Sbjct: 284 GAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEP 343
Query: 328 VEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
VEGG GN+LGQ+A+ M PQA+ VTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL
Sbjct: 344 VEGGGESGNLLGQMAAGMPQPQAIQVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 403
Query: 384 AANYLLDHMHEFED 397
AANYLLDHMHEFE+
Sbjct: 404 AANYLLDHMHEFEE 417
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVK ED V+DVKKNIETVQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSF+VVML K
Sbjct: 61 ENKVAENSFIVVMLNK 76
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/271 (80%), Positives = 231/271 (85%), Gaps = 7/271 (2%)
Query: 128 NLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETV 187
N ++++L + L+L S VYGQAAS+LVAGSNLE VQQILDMGGG+WDR+TV
Sbjct: 67 NSFVVIMLSKVRFASLVLSFESYY-VYGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTV 125
Query: 188 IRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA--APAPT 245
+RALRAAYNNPERA+EYLYSGIPEQ PPVA GGQA P AQ Q Q P A P+
Sbjct: 126 VRALRAAYNNPERAIEYLYSGIPEQAEAPPVAHMPLGGQA--PAAQPQ-QHPTQTAAVPS 182
Query: 246 SGPNANPLDLFPQGLPNMGSNAG-AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGK 304
GPNANPLDLFPQGLPN+GS AG AGTLDFLRNSQQFQALR MVQANPQILQPMLQELGK
Sbjct: 183 GGPNANPLDLFPQGLPNVGSGAGGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGK 242
Query: 305 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG 364
QNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQLA+AMPQAVTVTPEEREAIERLEAMG
Sbjct: 243 QNPHLMRLIQEHQDDFLRLINEPVESGEGNVLGQLAAAMPQAVTVTPEEREAIERLEAMG 302
Query: 365 FDRALVLEVFFACNKNEELAANYLLDHMHEF 395
FDRALVLEVFFACNKNEELAANYLLDHMHEF
Sbjct: 303 FDRALVLEVFFACNKNEELAANYLLDHMHEF 333
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 69/80 (86%), Gaps = 1/80 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTLKG+ F+IEVKPED V+DVKK IET QG VYPA QQMLIHQ KVLKD TTL+
Sbjct: 1 MRIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLD 60
Query: 61 ENKVAENSFVVVMLTKVIRF 80
ENK+ ENSFVV+ML+KV RF
Sbjct: 61 ENKIVENSFVVIMLSKV-RF 79
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/248 (84%), Positives = 222/248 (89%), Gaps = 1/248 (0%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD+YGQAASNLVAGSNLE T+QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIP
Sbjct: 145 SDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIP 204
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GA 269
EQ PPV R A Q NPPA A P+SGPNANPLDLFPQGLPN+GS A GA
Sbjct: 205 EQAEAPPVTREPASAQPANPPAAAPQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGA 264
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G+LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE
Sbjct: 265 GSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVE 324
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
GGEGN+LGQLASAMPQAVTVTPEER+AIERLEAMGFDRA VLEV+FACNKNEELAANYLL
Sbjct: 325 GGEGNILGQLASAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLL 384
Query: 390 DHMHEFED 397
DHMHEF++
Sbjct: 385 DHMHEFDE 392
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 72/77 (93%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKV 77
ENKVAENSF+V+ML+K
Sbjct: 61 ENKVAENSFIVIMLSKT 77
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/256 (82%), Positives = 227/256 (88%), Gaps = 8/256 (3%)
Query: 147 LHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206
+ S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY
Sbjct: 167 VGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLY 226
Query: 207 SGIPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 265
+GIPEQ VPPVAR A GQ NPPAQTQ QPAA AP SGPNANPLDLFPQGLPN+G
Sbjct: 227 TGIPEQAEVPPVARPPASAGQPANPPAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGG 283
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
N GAGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLIN
Sbjct: 284 NPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLIN 343
Query: 326 EPVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
EPVEGG GN+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNE
Sbjct: 344 EPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNE 403
Query: 382 ELAANYLLDHMHEFED 397
ELAANYLLDHMHEFE+
Sbjct: 404 ELAANYLLDHMHEFEE 419
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSF+V+M+ K
Sbjct: 61 ENKVAENSFIVIMMNK 76
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/251 (83%), Positives = 225/251 (89%), Gaps = 8/251 (3%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPE
Sbjct: 171 DVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPE 230
Query: 212 QTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
Q VPPVAR A GQ NPPAQTQ QPAA AP SGPNANPLDLFPQGLPN+G N GAG
Sbjct: 231 QAEVPPVARPPASAGQPANPPAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGGNPGAG 287
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
TLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPVEG
Sbjct: 288 TLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEG 347
Query: 331 G--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
G GN+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEELAAN
Sbjct: 348 GGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAAN 407
Query: 387 YLLDHMHEFED 397
YLLDHMHEFE+
Sbjct: 408 YLLDHMHEFEE 418
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSF+V+M+ K
Sbjct: 61 ENKVAENSFIVIMMNK 76
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/400 (56%), Positives = 275/400 (68%), Gaps = 15/400 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV ENSF+V+ML + P + P Q + P + +
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPV- 119
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + + S +D YGQA SNLVAGSNLEAT+Q IL+MGGG
Sbjct: 120 --------TVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGG 171
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +QA QPA
Sbjct: 172 IWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQASQATQPA 228
Query: 241 APAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQILQPM 298
AP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQANPQILQP+
Sbjct: 229 APSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPL 288
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVTPEEREAI 357
LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VTPEE EAI
Sbjct: 289 LQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAI 348
Query: 358 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 349 LRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/254 (82%), Positives = 226/254 (88%), Gaps = 8/254 (3%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+G
Sbjct: 87 SQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTG 146
Query: 209 IPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
IPEQ VPPVAR A GQ NPPAQTQ QPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 147 IPEQAEVPPVARPPASAGQPANPPAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGGNP 203
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GAGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEP
Sbjct: 204 GAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEP 263
Query: 328 VEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
VEGG GN+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEEL
Sbjct: 264 VEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEEL 323
Query: 384 AANYLLDHMHEFED 397
AANYLLDHMHEFE+
Sbjct: 324 AANYLLDHMHEFEE 337
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/58 (86%), Positives = 55/58 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTT 58
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETT 58
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/248 (81%), Positives = 218/248 (87%), Gaps = 4/248 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD+YGQAASNLVAGSNLE T+QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIP
Sbjct: 154 SDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIP 213
Query: 211 EQTAVPPVARASAGGQAGNPPAQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
EQ P VARA Q NPPA Q QPAA ++GPNANPLDLFPQ + AGA
Sbjct: 214 EQAEAPLVARAPVSAQPTNPPADAPQTAQPAA-VTSAGPNANPLDLFPQVA--ISGAAGA 270
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G+LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP E
Sbjct: 271 GSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAE 330
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
GGEGN+LGQ+AS MPQAVTVTPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAANYLL
Sbjct: 331 GGEGNILGQMASGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLL 390
Query: 390 DHMHEFED 397
DHMHEFE+
Sbjct: 391 DHMHEFEE 398
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 73/76 (96%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAEN+F+V+ML+K
Sbjct: 61 ENKVAENTFIVIMLSK 76
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/400 (56%), Positives = 272/400 (68%), Gaps = 15/400 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV ENSF+V+ML + P + P Q + P + +
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVT 120
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + S +D YGQA SNLVAGSNLEAT+Q IL+MGGG
Sbjct: 121 VSAPTPT---------ATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGG 171
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +QA QPA
Sbjct: 172 IWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQASQATQPA 228
Query: 241 APAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQILQPM 298
AP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQANPQILQP+
Sbjct: 229 APSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPL 288
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVTPEEREAI 357
LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VTPEE EAI
Sbjct: 289 LQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEEDEAI 348
Query: 358 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
RLE MGFDRALVL+VFFACNK+E+LAANYLLDHM+EF D
Sbjct: 349 LRLEPMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFAD 388
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/249 (84%), Positives = 223/249 (89%), Gaps = 4/249 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D+YGQAASNLVAGSNLEAT+QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIP
Sbjct: 137 TDIYGQAASNLVAGSNLEATIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIP 196
Query: 211 EQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
EQ VPPVA+A A GGQ N QA Q A APTSGPNANPLDLFPQGLPN+GSN GA
Sbjct: 197 EQAEVPPVAQAPASGGQPTN--PPAQAGQQPAAAPTSGPNANPLDLFPQGLPNVGSNTGA 254
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
GTLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVE
Sbjct: 255 GTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE 314
Query: 330 GGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
GGE GN+ QL AMPQA+ VTPEEREAIERLEAMGF+R LVLEVFFACNKNEELAANYL
Sbjct: 315 GGEGGNISSQLGGAMPQAIQVTPEEREAIERLEAMGFERGLVLEVFFACNKNEELAANYL 374
Query: 389 LDHMHEFED 397
LDHMHEF++
Sbjct: 375 LDHMHEFDE 383
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 71/74 (95%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIETVQG+DVYP++QQMLIHQGKVL+D TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTME 60
Query: 61 ENKVAENSFVVVML 74
ENKVAE SF+V+ML
Sbjct: 61 ENKVAEKSFIVIML 74
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/249 (84%), Positives = 223/249 (89%), Gaps = 4/249 (1%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S +D+YGQAASNLVAGSNLEAT+QQILDMGGGSW+RETV+RALRAA+NNPERAVEYLYSG
Sbjct: 140 SDADMYGQAASNLVAGSNLEATIQQILDMGGGSWNRETVVRALRAAFNNPERAVEYLYSG 199
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
IPEQ VPPVA+ A G A NPPAQ Q + GPNANPLDLFPQGLP+ GSNAG
Sbjct: 200 IPEQAEVPPVAQGPASGVAVNPPAQAQQPAAPP---SGGPNANPLDLFPQGLPSTGSNAG 256
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
AG LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPV
Sbjct: 257 AGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPV 316
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
E GEGNVLGQLASA+PQ VTVTPEEREAI+RL AMGFDRALVLEVFFACNKNEELAANYL
Sbjct: 317 E-GEGNVLGQLASAVPQTVTVTPEEREAIDRLVAMGFDRALVLEVFFACNKNEELAANYL 375
Query: 389 LDHMHEFED 397
LDHMHEF++
Sbjct: 376 LDHMHEFDE 384
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/77 (81%), Positives = 72/77 (93%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS-DVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MKVFVKTLKGT+FEIEVKPED V +VKKNIE VQG+DVYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVVVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTL 60
Query: 60 EENKVAENSFVVVMLTK 76
+E+KVAENSF+VVML+K
Sbjct: 61 DESKVAENSFIVVMLSK 77
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/250 (82%), Positives = 223/250 (89%), Gaps = 7/250 (2%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+++YGQAASNLVAGSNLEAT+Q+ILDMGGG W+RETV+RALRAA+NNPERA++YLYSGIP
Sbjct: 140 TNMYGQAASNLVAGSNLEATIQEILDMGGGDWNRETVVRALRAAFNNPERAIDYLYSGIP 199
Query: 211 EQTAVPPVAR---ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
EQ VPPVA+ A G A NPPA A QP AP SGPNANPLDLFPQG + GSNA
Sbjct: 200 EQAEVPPVAQVVQGPASGNAVNPPAL--APQPVV-APNSGPNANPLDLFPQGHHSTGSNA 256
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G G LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNP+LMRLIQEHQ DFLRLINEP
Sbjct: 257 GTGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPYLMRLIQEHQADFLRLINEP 316
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
VE GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA+VLEV+FACNKNEELAANY
Sbjct: 317 VE-GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAIVLEVYFACNKNEELAANY 375
Query: 388 LLDHMHEFED 397
LLDHMHEF++
Sbjct: 376 LLDHMHEFDE 385
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 73/76 (96%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEIEVKPED V+DVKKNIE+VQG+DVYPA+QQML++QGKVLKD TTL+
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV+E+SF VVML+K
Sbjct: 61 ENKVSESSFFVVMLSK 76
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/248 (83%), Positives = 216/248 (87%), Gaps = 6/248 (2%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
VYGQAASNLVAG+NLE VQQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ
Sbjct: 134 VYGQAASNLVAGNNLEGAVQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQ 193
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAG-A 269
PPVA+ QA PA QQPA P P GPNANPLDLFPQGLPN+GS A A
Sbjct: 194 AEAPPVAQVPVSEQA---PAAQPRQQPAQPTTVPAGGPNANPLDLFPQGLPNIGSGAAEA 250
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
GTLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE
Sbjct: 251 GTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQDDFLRLINEPVE 310
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
GGEGNV G LA+AMPQ+VTVTPEEREAIERL AMGFD ALVLEV+FACNKNEELAANYLL
Sbjct: 311 GGEGNVSGPLAAAMPQSVTVTPEEREAIERLGAMGFDPALVLEVYFACNKNEELAANYLL 370
Query: 390 DHMHEFED 397
DH+HEFED
Sbjct: 371 DHIHEFED 378
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 68/76 (89%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+ F+IEVKP D V+DVKKNIET QG+ VYPA QQMLI+QGKVLKD TTL
Sbjct: 1 MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSFVV+ML+K
Sbjct: 61 ENKVAENSFVVIMLSK 76
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/248 (82%), Positives = 218/248 (87%), Gaps = 7/248 (2%)
Query: 150 VSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 209
++DVYGQAASNLVAGS LE TVQQILDMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGI
Sbjct: 144 LTDVYGQAASNLVAGSTLETTVQQILDMGGGSWERDTVVRALRAAYNNPERAIEYLYSGI 203
Query: 210 PEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
PEQ +PP A S GQA NPP QA PA P + GPNANPLDLFPQGLPN+GSN GA
Sbjct: 204 PEQAEIPPAAPVS--GQAVNPP--VQASPPAVP--SGGPNANPLDLFPQGLPNVGSNVGA 257
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFL NS QFQALR MVQANPQILQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVE
Sbjct: 258 GNLDFLSNSPQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE 317
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
GEGNV GQ A A+PQAVTVTPEEREAIERLEAMGFDRALVL+VFFACNKNEE+AANYLL
Sbjct: 318 -GEGNVPGQPAGAIPQAVTVTPEEREAIERLEAMGFDRALVLQVFFACNKNEEMAANYLL 376
Query: 390 DHMHEFED 397
DHMHEF++
Sbjct: 377 DHMHEFDE 384
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLIHQ KVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLD 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSFVV+ML+K
Sbjct: 61 ENKVAENSFVVIMLSK 76
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/399 (55%), Positives = 274/399 (68%), Gaps = 10/399 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG VLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
E+KV EN+F+V+ML + P + P Q + P +
Sbjct: 61 ESKVLENNFLVIMLRQNKGSSSAAPAKSKEPSNQAPPTQTVPANPPSQAPVVPAPPAAAA 120
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ ++ + + + ++ YGQAASNLVAG NLEAT+Q IL+MGGG
Sbjct: 121 PAPIVPISAPTPTATASPASAVAV---STEAETYGQAASNLVAGGNLEATIQSILEMGGG 177
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++ QA QPA
Sbjct: 178 TWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQPADPVQ---ALQATQPA 234
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
+SGPNA+PLDLFPQ LPN +N AG G LD LRN+ QF++L ++VQANPQILQP+L
Sbjct: 235 --VASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLL 292
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG-NVLGQLASAMPQAVTVTPEEREAIE 358
QELGKQNP +++LIQ++Q +FLRLINEP EG E N+L Q A +PQ + VTPEE EAI
Sbjct: 293 QELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLDQFAEGVPQTIAVTPEENEAIL 352
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
RLE MGFDRALVLEV+FACNK+E LAANYLLDHM+EF+D
Sbjct: 353 RLEGMGFDRALVLEVYFACNKDETLAANYLLDHMNEFDD 391
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/399 (56%), Positives = 267/399 (66%), Gaps = 28/399 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
EN+V EN+F+V+ML + P +Q P Q + P
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSSAAPAKVTANQ--APSTQTVPATPPQTSAAPDAPAPIAP 118
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + + +D YGQA SNLVAGSNLE T++ IL+MGGG
Sbjct: 119 AAT-------------ATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGG 165
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P QA QPA
Sbjct: 166 TWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQAVQPA 219
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
+GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQILQP+LQ
Sbjct: 220 ----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQILQPLLQ 275
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEEREAIE 358
EL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE EAI
Sbjct: 276 ELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEENEAIL 334
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
RLE MGFDRALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 335 RLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 373
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/399 (56%), Positives = 269/399 (67%), Gaps = 24/399 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
EN+V EN+F+V+ML + P +Q P Q + P
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSSAAPAKVTANQ--APSTQTVPATPPQTSA---------A 109
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + + + + +D YGQA SNLVAGSNLE T++ IL+MGGG
Sbjct: 110 PDAPAPIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGG 169
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P QA QPA
Sbjct: 170 TWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQAVQPA 223
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
+GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQILQP+LQ
Sbjct: 224 ----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQILQPLLQ 279
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEEREAIE 358
EL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE EAI
Sbjct: 280 ELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEENEAIL 338
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
RLE MGFDRALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 339 RLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 377
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 244/413 (59%), Positives = 287/413 (69%), Gaps = 18/413 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIEGAQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQ--QIRPKLQVLRLLPRHNQRLHLRLLHQ 118
N VAENSF+V+ML+K + GP Q +P V P R
Sbjct: 61 GNNVAENSFLVIMLSKA-KASPSGPSTASKAPTIQAQPATPVAAATPSGPATPVARTPPS 119
Query: 119 LWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMG 178
L + + +DVY QAASNLV+G +LE TVQ ILDMG
Sbjct: 120 TAPVSASELAPPSAQPPAGSDIPAAAVTASGDADVYSQAASNLVSGGSLEQTVQHILDMG 179
Query: 179 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG-QAGNPPAQTQAQ 237
GG+W+R+ V+RALRAAYNNPERA++YLYSGIPE PPVARA A QA NP A +QA
Sbjct: 180 GGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAPVQQATNPQALSQAA 239
Query: 238 -----QPAAPAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQALRT 286
QP+ A ++GPNANPL+LFPQG+P GSN AGAG LD LR QFQAL
Sbjct: 240 PVPPVQPSGVA-SAGPNANPLNLFPQGVPTGGSNPGAGVGAGAGALDALRALPQFQALLA 298
Query: 287 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGNVLGQLASAMPQ 345
+VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE P G GN+LGQLA+AMPQ
Sbjct: 299 LVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAAGNILGQLAAAMPQ 358
Query: 346 -AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
AVTVTPEERE+I+RLEAMGF+R LVLEVFFACN++EELAANYLLDH HE+ED
Sbjct: 359 AAVTVTPEERESIQRLEAMGFNRELVLEVFFACNRDEELAANYLLDHGHEYED 411
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/399 (57%), Positives = 275/399 (68%), Gaps = 14/399 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEIEV P KV D+KK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIEVDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQ--VLRLLPRHNQRLHLRLLHQ 118
ENKV EN+F+V I + G P Q V R P ++L +
Sbjct: 61 ENKVLENNFIV------IMLSKKGSTSAASGTAKEPTKQPMVDRAAPVAP---AMQLPAE 111
Query: 119 LWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMG 178
+S + L + + +D YGQAAS+LVAGSNLE TVQ IL+MG
Sbjct: 112 QTPVTPVSAPVPTALAVAPPAATAAAAAASTQADPYGQAASSLVAGSNLEGTVQSILEMG 171
Query: 179 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 238
GG+WDR+TV+ ALRAA+NNPERAVEYLY+G+PEQ A P A GQ G+P Q+QQ
Sbjct: 172 GGAWDRDTVVHALRAAFNNPERAVEYLYTGVPEQEAPAPAQEPPALGQQGDPVQAPQSQQ 231
Query: 239 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPM 298
A +SGPNANPLDLFPQ LPN +NA G LD LRN+ QF+ L ++VQANPQILQP+
Sbjct: 232 AVA---SSGPNANPLDLFPQVLPNASANAAGGNLDVLRNNSQFRGLLSLVQANPQILQPL 288
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 358
LQELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q + +PQ V VTP E EAI+
Sbjct: 289 LQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLEQFGAGVPQTVAVTPAENEAIQ 348
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
RLE MGFDR LVLEVFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 349 RLEHMGFDRDLVLEVFFACNKDEQLAANYLLDHMNEFDD 387
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/252 (82%), Positives = 220/252 (87%), Gaps = 5/252 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
DVYGQAASNLVAG+NLE +QQILDMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIP
Sbjct: 158 GDVYGQAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 217
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
EQ VPPVA S GQA N PAQ Q A P+ GPNANPLDLFPQGLPNMGS
Sbjct: 218 EQAEVPPVAPVSLSGQAANQPAQPQQPAQPAAVPSGGPNANPLDLFPQGLPNMGSGGAGA 277
Query: 271 -----TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
TLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNP+L+RLIQEHQTDFLRLIN
Sbjct: 278 GAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPNLVRLIQEHQTDFLRLIN 337
Query: 326 EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
EPVEGGEGN++GQLA+AMPQAVTVTPEEREAIERLEAMGFDR LVLEVFFACNKNEELAA
Sbjct: 338 EPVEGGEGNIMGQLAAAMPQAVTVTPEEREAIERLEAMGFDRGLVLEVFFACNKNEELAA 397
Query: 386 NYLLDHMHEFED 397
NYLLDHMHEFED
Sbjct: 398 NYLLDHMHEFED 409
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 71/76 (93%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT F++EVKPED ++DVKK+IET QG+DVYPA QQMLI+QGKVLKD TT++
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTID 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSFVV+MLTK
Sbjct: 61 ENKVAENSFVVIMLTK 76
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/255 (82%), Positives = 222/255 (87%), Gaps = 12/255 (4%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVY QAASNLVAGSNLE TVQQILDMGGGSWDR+TV+RALRAAYNNPERAV+YLYSGIP
Sbjct: 139 TDVYDQAASNLVAGSNLETTVQQILDMGGGSWDRDTVVRALRAAYNNPERAVDYLYSGIP 198
Query: 211 EQTAVPPVARASAGG--------QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 262
EQT +PPVARA A QA NP AQ +Q P+SGPNANPLDLFPQGL N
Sbjct: 199 EQTEIPPVARAPAAPAVTAPASAQAINPAAQDASQ---LAVPSSGPNANPLDLFPQGLTN 255
Query: 263 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 322
GSNAGAG LDFLRNS QFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLR
Sbjct: 256 AGSNAGAGNLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLR 315
Query: 323 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
LINEPVE GEGNVLGQ A A+PQAVTVTPEEREAIERLEAMGFDRALVLEV+FACNKNEE
Sbjct: 316 LINEPVE-GEGNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEE 374
Query: 383 LAANYLLDHMHEFED 397
LAANYLLDH+HEF++
Sbjct: 375 LAANYLLDHLHEFDE 389
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 73/76 (96%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE+VQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSFVV+ML+K
Sbjct: 61 ENKVAENSFVVIMLSK 76
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/399 (57%), Positives = 272/399 (68%), Gaps = 20/399 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGKVL D TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGKVLSDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
EN+V EN+F+V+ML + P +Q P Q + ++
Sbjct: 61 ENQVTENNFLVIMLRQNKGSSSAAPAKTTANQ--APPTQTVPVV---------PPQTSAA 109
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + L + + + +D YGQAASNLVAGSNLE T+Q IL+MGGG
Sbjct: 110 PAAPAPIVPVSALAATATASAAPAVAVSTEADSYGQAASNLVAGSNLEGTIQSILEMGGG 169
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP QA Q A
Sbjct: 170 IWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQAAQTA 226
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
AP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQILQP+LQ
Sbjct: 227 AP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQPLLQ 283
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEEREAIE 358
ELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPEE EAI
Sbjct: 284 ELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADAA-ETIAVTPEENEAIL 342
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
RLE MGFDRALVLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 343 RLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 381
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 226/403 (56%), Positives = 269/403 (66%), Gaps = 24/403 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV+EN F+VVMLTK R + LLH W
Sbjct: 61 ENKVSENGFLVVMLTKS-RSSGIARCSSSSSSSSSSPSTSSSSGSGCYAVSKFSLLHLFW 119
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
L L+ L + SDVYGQAASNLVAG+ LE T+QQ++DMGGG
Sbjct: 120 CS---------------LSLVFLRRPPAATSDVYGQAASNLVAGTGLEQTIQQLVDMGGG 164
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
SWDR++ +RALRAAYNNPERAVEYLYSGIP+ PPVARA A T A
Sbjct: 165 SWDRDSCVRALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPTAAPTGG 224
Query: 241 APAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPM 298
PAP T GPNA PLDLFPQ G G LDFLRN+ QFQALRTMVQ NPQ+LQPM
Sbjct: 225 VPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNPQLLQPM 284
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE----GNVLGQLASAMPQAVTVTPEER 354
LQELG+QNP L+RLI E+ +FLRLI+E GGE G++LGQLA AMPQ+++VTPEER
Sbjct: 285 LQELGRQNPQLLRLINENHVEFLRLISE--AGGENPEAGDLLGQLAGAMPQSISVTPEER 342
Query: 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EAIERLEAMGFDRA V+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 343 EAIERLEAMGFDRASVIEAFLACDKNEQLAANYLLEHSGDYED 385
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/407 (53%), Positives = 263/407 (64%), Gaps = 22/407 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR----LLPRHNQRLHLRLL 116
ENKV E F+VVML+K G Q +P P Q +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPAS 120
Query: 117 HQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLH-SVSDVYGQAASNLVAGSNLEATVQQIL 175
+ L L ++ + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 121 PIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQQIM 180
Query: 176 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 232
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 181 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 235
Query: 233 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 292
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 236 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 288
Query: 293 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 350
QILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 289 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 348
Query: 351 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
P E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 349 PAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 395
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/397 (52%), Positives = 259/397 (65%), Gaps = 34/397 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV+E+ F+VVML+K Q + + P + + + +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTQAANNST 120
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + +D YG AASNLVAGSNLE T+QQI+DMGGG
Sbjct: 121 SSTDAPTT-------------------NVSADTYGLAASNLVAGSNLEQTIQQIMDMGGG 161
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 162 NWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-------- 213
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQILQP+LQ
Sbjct: 214 ------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQ 266
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 360
ELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+EAI RL
Sbjct: 267 ELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRL 326
Query: 361 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 327 EAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/397 (52%), Positives = 257/397 (64%), Gaps = 49/397 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV+E+ F+VVML+K Q + + P + +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPATTVSMSNSTPPSDPPV--------- 111
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
Q H +D YG AASNLVAGSNLE T+QQI+DMGGG
Sbjct: 112 -------------------------QTHVSADTYGLAASNLVAGSNLEQTIQQIMDMGGG 146
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 147 NWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-------- 198
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQILQP+LQ
Sbjct: 199 ------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQ 251
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 360
ELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+EAI RL
Sbjct: 252 ELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRL 311
Query: 361 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 312 EAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 348
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/400 (52%), Positives = 257/400 (64%), Gaps = 35/400 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLL-PRHNQRLHLRLLHQL 119
ENKV E F+VVML+K GP Q + L P Q + + +
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 120
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
+ Q + SD YGQAAS LV+GS++E VQQI++MGG
Sbjct: 121 PVQE----------------------QPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGG 158
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
GSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G ++
Sbjct: 159 GSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS----------GREL 208
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQILQPML
Sbjct: 209 TAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPML 268
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEEREAI 357
QELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPEE+E+I
Sbjct: 269 QELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESI 328
Query: 358 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
ERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 329 ERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/397 (52%), Positives = 258/397 (64%), Gaps = 34/397 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV+E+ F+VVML+K Q + P + + + +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPPTTVSTSNSTPPSDPPVQTQAANNST 120
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + +D YG AASNLVAGSNLE T+QQI+DMGGG
Sbjct: 121 SSTDAPTT-------------------NVSADTYGLAASNLVAGSNLEQTIQQIMDMGGG 161
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 162 NWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-------- 213
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQILQP+LQ
Sbjct: 214 ------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQ 266
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 360
ELGKQNP L+RLIQEH +FL+LINEPV+G EG++ Q MP A+ VTP E+EAI RL
Sbjct: 267 ELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPTEQEAIGRL 326
Query: 361 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 327 EAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/397 (52%), Positives = 258/397 (64%), Gaps = 34/397 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV+E+ F+VVML+K Q + P + + + +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPPTTVSTSNSTPPSDPPVQTQAANNST 120
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + +D YG AASNLVAGSNLE T+QQI+DMGGG
Sbjct: 121 SSTDAPTT-------------------NVSADTYGLAASNLVAGSNLEQTIQQIMDMGGG 161
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 162 NWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-------- 213
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQILQP+LQ
Sbjct: 214 ------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQ 266
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 360
ELGKQNP L+RLIQEH +FL+LINEPV+G EG++ Q MP A+ VTP E+EAI RL
Sbjct: 267 ELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPAEQEAIGRL 326
Query: 361 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 327 EAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/247 (79%), Positives = 213/247 (86%), Gaps = 1/247 (0%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP
Sbjct: 132 TDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIP 191
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
Q +PPVA+A A G+ P Q A A T GPNANPL+LFPQG+P + AGAG
Sbjct: 192 AQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAG 251
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE
Sbjct: 252 NLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE- 310
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
GE NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLD
Sbjct: 311 GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLD 370
Query: 391 HMHEFED 397
HMHEFED
Sbjct: 371 HMHEFED 377
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKV 77
EN V ENSF+V+ML+K
Sbjct: 60 ENNVVENSFIVIMLSKT 76
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/247 (79%), Positives = 212/247 (85%), Gaps = 1/247 (0%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP
Sbjct: 132 TDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIP 191
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
Q +PPVA+A A G+ P Q A A T GPNANPL+LFPQG+P + AGAG
Sbjct: 192 AQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAG 251
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
LDFLRNS QFQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE
Sbjct: 252 NLDFLRNSHQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE- 310
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
GE NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLD
Sbjct: 311 GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLD 370
Query: 391 HMHEFED 397
HMHEFED
Sbjct: 371 HMHEFED 377
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKV 77
EN V ENSF+V+ML+K
Sbjct: 60 ENNVVENSFIVIMLSKT 76
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/400 (51%), Positives = 256/400 (64%), Gaps = 37/400 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 58
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLL-PRHNQRLHLRLLHQL 119
ENKV E F+VVML+K GP Q + L P Q + + +
Sbjct: 59 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 118
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
+ Q + SD YGQAAS LV+GS++E VQQI++MGG
Sbjct: 119 PVQE----------------------QPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGG 156
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
GSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G ++
Sbjct: 157 GSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS----------GREL 206
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQILQPML
Sbjct: 207 TAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPML 266
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEEREAI 357
QELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPEE+E+I
Sbjct: 267 QELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESI 326
Query: 358 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
ERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 327 ERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 366
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 215/406 (52%), Positives = 266/406 (65%), Gaps = 49/406 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+NKV+E+ F+VVML+K G Q P + V P + ++
Sbjct: 61 DNKVSEDGFLVVMLSKSKVLGSAGTSSTQTAS--NPPITV----PTPDS---TSVVQTQS 111
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+N S +L + +D YGQAASNLVAGSNLE T+QQ++DMGGG
Sbjct: 112 ANNNASP--------------AVLAPTNVTTDTYGQAASNLVAGSNLEQTIQQLIDMGGG 157
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
SWDR+TV RALRAA+NNPERAV+YLYSGIPE V A AQ P+
Sbjct: 158 SWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVPAAQYPS 201
Query: 241 APAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 291
P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALRTMVQ+N
Sbjct: 202 NPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALRTMVQSN 260
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 351
PQILQP+LQELGKQNP L+RLI EH ++FL+LINEP++G EG+ Q MP AV VTP
Sbjct: 261 PQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTP 320
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
E+EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 321 AEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 366
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 214/404 (52%), Positives = 260/404 (64%), Gaps = 46/404 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG + YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ----LHQQIRPKLQVLRLLPRHNQRLHLRLL 116
ENKV E F+VVML+K G Q +P+ P Q + +
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAGSAGQSSVQPASATTSSTKPET------PSTTQSIAVPAS 114
Query: 117 HQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILD 176
Q + +D YGQAAS LV+GS+LE VQQI++
Sbjct: 115 PITAQE-----------------------QPAAQTDTYGQAASTLVSGSSLEQMVQQIME 151
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPAQTQ 235
MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE V A A G Q AG+ A
Sbjct: 152 MGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETAEV---AVAVPGAQMAGSGAA--- 205
Query: 236 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 295
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NPQIL
Sbjct: 206 ---PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQIL 261
Query: 296 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPEE 353
QPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG G+ ++L Q MP A+ VTP E
Sbjct: 262 QPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGDADMLDQPEQEMPHAINVTPAE 321
Query: 354 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+EAI+RLEAMGFD+ALV+E F AC++NEELAANYLL++ +FED
Sbjct: 322 QEAIQRLEAMGFDKALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/406 (52%), Positives = 259/406 (63%), Gaps = 44/406 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR----LLPRHNQRLHLRLL 116
ENKV E F+VVML+K G Q +P P Q +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPAS 120
Query: 117 HQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILD 176
+ Q + +D YGQAAS LV+GS+LE VQQI++
Sbjct: 121 P-----------------------IPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIME 157
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPAQ 233
MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 158 MGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA------ 211
Query: 234 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 293
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + LRTMV +NPQ
Sbjct: 212 -----PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQLEQLRTMVHSNPQ 265
Query: 294 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTP 351
ILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VTP
Sbjct: 266 ILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTP 325
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 326 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/247 (78%), Positives = 213/247 (86%), Gaps = 2/247 (0%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP
Sbjct: 132 TDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIP 191
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
Q +PPVA+A + G+ P Q A T GPNANPL+LFPQG+P + AGAG
Sbjct: 192 AQAEIPPVAQAPSTGEQPANPQAQPQQAAPVAA-TGGPNANPLNLFPQGMPAADAAAGAG 250
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
LDFLRNSQ+FQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE
Sbjct: 251 NLDFLRNSQKFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE- 309
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
GE NV+ QL +AMPQAVTVTPEEREAIERLEAMGFDRA+VLEVFFACNKNEELAANYLLD
Sbjct: 310 GEENVMEQLEAAMPQAVTVTPEEREAIERLEAMGFDRAMVLEVFFACNKNEELAANYLLD 369
Query: 391 HMHEFED 397
HMHEFED
Sbjct: 370 HMHEFED 376
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 67/77 (87%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL GT+FEIEVKP D VSDVKK IETV+G++ YPA +QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGTNFEIEVKPADTVSDVKKAIETVKGAE-YPAVKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKV 77
EN V ENSF+V+ML+K
Sbjct: 60 ENNVVENSFIVIMLSKT 76
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/233 (81%), Positives = 205/233 (87%), Gaps = 13/233 (5%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
+QQILDMGGGSWDR+TV+RALRAA+NNPERAV+YLYSGIPEQ PPV + A Q GNP
Sbjct: 2 IQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGNP 61
Query: 231 PAQTQAQQPAAP----APTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALR 285
PA AAP P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR
Sbjct: 62 PA-------AAPQLANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQFQALR 114
Query: 286 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAMP 344
MVQANPQILQPMLQELGKQNPHLMRLIQ+HQ DFLRLINEPVEGGEGN+LGQ A +AMP
Sbjct: 115 AMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGEGNILGQPAGAAMP 174
Query: 345 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
QAV+VTPEEREAIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 175 QAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 227
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/397 (52%), Positives = 259/397 (65%), Gaps = 32/397 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+NKV+E+ F+VVML+K G Q + P L+
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQFASNPPTTVSTPNSTP---------LVQPQS 111
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+N S + + ++ YGQAASNLVAGSNLE T+QQ++DMGGG
Sbjct: 112 ANNNASA--------------TDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGG 157
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
SWDR+TV ALRAAYNNPERAV+YLYSGIP VA A A P +QT A
Sbjct: 158 SWDRDTVTCALRAAYNNPERAVDYLYSGIP-------VAAEIAVPAASYPISQTTETGGA 210
Query: 241 APAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
+ G PN++PL++FPQ + G+ A G+LDFLRN+ QFQALR+MVQ+NPQILQP+L
Sbjct: 211 SVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNPQFQALRSMVQSNPQILQPVL 269
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 359
QELGKQNP L+ LIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+EAI R
Sbjct: 270 QELGKQNPSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGR 329
Query: 360 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
LEAMGFDRA V+E F AC+ +E+LAANYLL++ +FE
Sbjct: 330 LEAMGFDRASVIEAFLACDHDEQLAANYLLENAGDFE 366
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 215/402 (53%), Positives = 255/402 (63%), Gaps = 49/402 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV+E F+VVML+K G Q Q VL P ++
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSVQ------ 114
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+D YGQAASNLVAG+NLE TVQQ++DMGGG
Sbjct: 115 ------------------------------TDTYGQAASNLVAGNNLEQTVQQLMDMGGG 144
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQTQAQQP 239
+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R +G Q
Sbjct: 145 NWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSG--------QATETDA 196
Query: 240 AAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 295
+ PAP SG PN PL++FPQ + G G+L+FLRN+ QFQALRTMV NPQIL
Sbjct: 197 SVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHTNPQIL 256
Query: 296 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 355
QPMLQELGKQNP L+RLIQ+H +FL+LINEPV+ EG + Q MP A+ VTP E+
Sbjct: 257 QPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVTPAEQA 316
Query: 356 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
AIERLEAMGFDRALV+E F AC++NEELAANYLL++ +F+D
Sbjct: 317 AIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 358
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/250 (74%), Positives = 210/250 (84%), Gaps = 11/250 (4%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
+VS VYGQAASNL+AGSN++ TVQQIL+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSG
Sbjct: 137 AVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSG 196
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSNA 267
IPEQ VP VAR+ + GQA NP + +P PA PT GPN NPL+LFPQG+PNMG+
Sbjct: 197 IPEQADVPAVARSPSVGQAENP-----SVRPPQPAVPTGGPNTNPLNLFPQGIPNMGAED 251
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
AG LDFLRN+QQFQALR MVQANPQILQPMLQELGKQNPHLM+LIQEHQ+DFL LINEP
Sbjct: 252 NAGDLDFLRNNQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP 311
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EG E LA+ M QA+TVTPEE EAI+RLE MGFDR LVLEVF ACN+NE+LAANY
Sbjct: 312 -EGEE----NPLAAGMTQAITVTPEEDEAIQRLEDMGFDRDLVLEVFIACNRNEDLAANY 366
Query: 388 LLDHMHEFED 397
LLDH +EF+D
Sbjct: 367 LLDHQNEFDD 376
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 66/76 (86%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF+I+V +D V+DVKK IE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
EN VAE+SFVV+ML+K
Sbjct: 61 ENNVAEDSFVVIMLSK 76
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 208/402 (51%), Positives = 259/402 (64%), Gaps = 40/402 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV E F+VVML+K G + +Q +RLL L H L+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAG----------QASVQCVRLL----------LFHSLF 100
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+L L+ + + + +D YGQAAS LV+GS+LE VQQI++MGGG
Sbjct: 101 PLPHLRLSSIYNPVFTCSCFTYSCSRTTG-TDTYGQAASTLVSGSSLEQMVQQIMEMGGG 159
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPAQTQAQ 237
SWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 160 SWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---------- 209
Query: 238 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q L + A +P
Sbjct: 210 -PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQVAIL--TISAFSLNCEP 265
Query: 298 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPEERE 355
MLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VTP E+E
Sbjct: 266 MLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQE 325
Query: 356 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
AI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 326 AIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 367
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 190/249 (76%), Positives = 209/249 (83%), Gaps = 7/249 (2%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S ++VY AAS LVAGSNLE +QQILDMGGG+WDR+TVIR +RAA+NNPERAVEYLYSG
Sbjct: 140 SEANVYDSAASLLVAGSNLEGAIQQILDMGGGTWDRDTVIRIVRAAFNNPERAVEYLYSG 199
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-A 267
IPEQ PPVA + GQA NP Q A ++GPNANPLDLFPQGLP+MGSN A
Sbjct: 200 IPEQAEAPPVAPSPPSGQAANPLDQPPAAA-QPAPASAGPNANPLDLFPQGLPDMGSNAA 258
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GAG LDFLR +QQFQALR MVQ+NPQILQPMLQELGKQNPHLMRLIQEHQ DFL+LINEP
Sbjct: 259 GAGNLDFLRTNQQFQALRAMVQSNPQILQPMLQELGKQNPHLMRLIQEHQADFLQLINEP 318
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
+EGGE N+LG PQA++VTPEER+AIERLEAMGFDR LVLEVFFACNKNEELAANY
Sbjct: 319 MEGGE-NLLGH----GPQAISVTPEERDAIERLEAMGFDRELVLEVFFACNKNEELAANY 373
Query: 388 LLDHMHEFE 396
LLDHMHEFE
Sbjct: 374 LLDHMHEFE 382
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 68/76 (89%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK++VKTLKG+ FEI+V P+D V+DVK++IET QG+ VYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLL 60
Query: 61 ENKVAENSFVVVMLTK 76
EN VAENSF+V+ML+K
Sbjct: 61 ENNVAENSFIVIMLSK 76
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 176/253 (69%), Positives = 204/253 (80%), Gaps = 9/253 (3%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D YG+AAS LVAGSNLE T+QQ+LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIP
Sbjct: 141 ADPYGEAASILVAGSNLEQTIQQMLDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIP 200
Query: 211 E--QTAVP----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
E + AVP P + + A GQ N ++ A P+ GPNA PL+LFPQGLPN+G
Sbjct: 201 ETAEIAVPVARSPPSNSGAAGQGTNDVVAAESDLAQATVPSGGPNAAPLNLFPQGLPNLG 260
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ AG G LDFLRN+ QFQALRTMVQANPQILQPMLQEL KQNP LMRLIQ+HQ +FL LI
Sbjct: 261 ATAGGGALDFLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLI 320
Query: 325 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
NE EG++LGQ A+ MPQ++ VTPEEREAIERLEAMGFDRALV+E F AC+KNEELA
Sbjct: 321 NEET---EGDLLGQFAAEMPQSINVTPEEREAIERLEAMGFDRALVIEAFLACDKNEELA 377
Query: 385 ANYLLDHMHEFED 397
ANYLL+H ++ED
Sbjct: 378 ANYLLEHAADYED 390
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 59/77 (76%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI+ +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIDAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKV 77
+N++ EN F+VVMLTK
Sbjct: 61 DNQITENGFLVVMLTKT 77
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 177/256 (69%), Positives = 204/256 (79%), Gaps = 10/256 (3%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
D YGQAASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PE
Sbjct: 144 DNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPE 203
Query: 212 QTAVPPVARA---SAGGQAGNPPAQTQAQQPA-AP------APTSGPNANPLDLFPQGLP 261
Q P +A A QA PA Q P+ AP P+SGPNANPLDLFPQ LP
Sbjct: 204 QAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLP 263
Query: 262 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
N +NAG G LD LRN+ QF+ L ++VQANPQILQP+LQELGKQNP +++LIQE+Q +FL
Sbjct: 264 NASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFL 323
Query: 322 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
RLINEP EG EGN+L Q A+ MPQ V VTPEE EAI+RLE MGFDR LVLEVFFACNK+E
Sbjct: 324 RLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDE 383
Query: 382 ELAANYLLDHMHEFED 397
+LAANYLLDHM+EF+D
Sbjct: 384 QLAANYLLDHMNEFDD 399
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 62/74 (83%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVML 74
ENKV EN+F+V+ML
Sbjct: 61 ENKVVENNFIVIML 74
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/256 (69%), Positives = 203/256 (79%), Gaps = 10/256 (3%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
D YGQAASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PE
Sbjct: 144 DNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPE 203
Query: 212 QTAVPPVARA---SAGGQAGNPPAQTQAQQPA-AP------APTSGPNANPLDLFPQGLP 261
Q P +A A QA PA Q P+ AP P+SGPNANPLDLFPQ LP
Sbjct: 204 QAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLP 263
Query: 262 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
N +NAG G LD LRN+ QF+ L ++VQANPQILQP+LQELGKQNP +++LIQE+Q +FL
Sbjct: 264 NASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFL 323
Query: 322 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
RLINEP EG EGN+L Q A+ MPQ V VTPEE EAI+RLE MGFDR LVLEVFFACNK+E
Sbjct: 324 RLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDE 383
Query: 382 ELAANYLLDHMHEFED 397
LAANYLLDHM+EF+D
Sbjct: 384 LLAANYLLDHMNEFDD 399
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 62/74 (83%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVML 74
ENKV EN+F+V+ML
Sbjct: 61 ENKVVENNFIVIML 74
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/256 (69%), Positives = 206/256 (80%), Gaps = 12/256 (4%)
Query: 154 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 213
Y QAASNLV+G+NLE T+QQILDMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE
Sbjct: 147 YSQAASNLVSGNNLEQTIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENV 206
Query: 214 AVPPVARASAGGQAGN----PPAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN-- 266
PVARA A GQ N PAQ P P+P S GPNANPL+LFPQG+P+ GSN
Sbjct: 207 EAQPVARAPAAGQQTNQQAASPAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPG 266
Query: 267 ----AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 322
AG+G LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLR
Sbjct: 267 VVPGAGSGALDALRQLPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLR 326
Query: 323 LINEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
L+NE EGG GN+LGQLA+A+PQ +TVTPEEREAI+RLE MGF+R LVLEVFFACNK+E
Sbjct: 327 LVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREAIQRLEGMGFNRELVLEVFFACNKDE 386
Query: 382 ELAANYLLDHMHEFED 397
EL ANYLLDH HEF++
Sbjct: 387 ELTANYLLDHGHEFDE 402
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 61/77 (79%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKV 77
N VAENSF+V+ML+K
Sbjct: 61 SNGVAENSFLVIMLSKA 77
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/256 (68%), Positives = 206/256 (80%), Gaps = 12/256 (4%)
Query: 154 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 213
Y QAASNLV+G++LE T+QQILDMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE
Sbjct: 147 YSQAASNLVSGNSLEQTIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENV 206
Query: 214 AVPPVARASAGGQAGN----PPAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN-- 266
PVARA A GQ N PAQ P P+P S GPNANPL+LFPQG+P+ GSN
Sbjct: 207 EAQPVARAPAAGQQTNQQAASPAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPG 266
Query: 267 ----AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 322
AG+G LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLR
Sbjct: 267 VIPGAGSGALDALRQLPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLR 326
Query: 323 LINEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
L+NE EGG GN+LGQLA+A+PQ +TVTPEEREAI+RLE MGF+R LVLEVFFACNK+E
Sbjct: 327 LVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREAIQRLEGMGFNRELVLEVFFACNKDE 386
Query: 382 ELAANYLLDHMHEFED 397
EL ANYLLDH HEF++
Sbjct: 387 ELTANYLLDHGHEFDE 402
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 61/77 (79%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKV 77
N VAENSF+V+ML+K
Sbjct: 61 SNGVAENSFLVIMLSKA 77
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 193/397 (48%), Positives = 240/397 (60%), Gaps = 54/397 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV+E+ F+VVML+K Q + + P + + + +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPASNPATTVSMSNSTPPSDPPVQTQAANNST 120
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + +D YG AASNLVAGSNLE T+QQI+DMGGG
Sbjct: 121 SSTDAPTT-------------------NVSADTYGLAASNLVAGSNLEQTIQQIMDMGGG 161
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 162 NWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-------- 213
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
GPN++PL++FPQ + + AG G+LDFLRN NPQ
Sbjct: 214 ------GPNSSPLNMFPQETIS-STGAGLGSLDFLRN-------------NPQ------- 246
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 360
ELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+EAI RL
Sbjct: 247 ELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIGRL 306
Query: 361 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 307 EAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 343
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/406 (48%), Positives = 242/406 (59%), Gaps = 64/406 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR----LLPRHNQRLHLRLL 116
ENKV E F+VVML+K G Q +P P Q +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPAS 120
Query: 117 HQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILD 176
+ Q + +D YGQAAS LV+GS+LE VQQI++
Sbjct: 121 P-----------------------IPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIME 157
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPAQ 233
MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 158 MGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA------ 211
Query: 234 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 293
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 212 -----PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND-------------- 251
Query: 294 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTP 351
QELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VTP
Sbjct: 252 ------QELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTP 305
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 306 AEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 351
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 181/265 (68%), Positives = 206/265 (77%), Gaps = 16/265 (6%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S +DVY QAASNLV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSG
Sbjct: 147 SDADVYSQAASNLVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSG 206
Query: 209 IPEQTAVP-PVARASAGGQAGNP-----PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 262
IPE P PVARA A Q GNP SGPNANPL+LFPQG+P+
Sbjct: 207 IPENVEPPQPVARAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPS 266
Query: 263 MGSN--------AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 314
GSN AGAG LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQ
Sbjct: 267 AGSNPGAAAGAGAGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQ 326
Query: 315 EHQTDFLRLINEPVEGGE--GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 372
E+Q +FLRL+NE + G GN+LGQLA+AMPQA+TVTPEEREAI+RLEAMGF+R LVLE
Sbjct: 327 ENQAEFLRLVNESPDSGTAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMGFNRELVLE 386
Query: 373 VFFACNKNEELAANYLLDHMHEFED 397
VFFACNK+EELAANYLLDH HEFED
Sbjct: 387 VFFACNKDEELAANYLLDHGHEFED 411
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 64/74 (86%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVML 74
NKVAENSF+V+ML
Sbjct: 61 GNKVAENSFLVIML 74
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 181/265 (68%), Positives = 206/265 (77%), Gaps = 16/265 (6%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S +DVY QAASNLV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSG
Sbjct: 147 SDADVYSQAASNLVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSG 206
Query: 209 IPEQTAVP-PVARASAGGQAGNP-----PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 262
IPE P PVARA A Q GNP SGPNANPL+LFPQG+P+
Sbjct: 207 IPENVEPPQPVARAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPS 266
Query: 263 MGSN--------AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 314
GSN AGAG LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQ
Sbjct: 267 AGSNPGAAAGAGAGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQ 326
Query: 315 EHQTDFLRLINEPVEGGE--GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 372
E+Q +FLRL+NE + G GN+LGQLA+AMPQA+TVTPEEREAI+RLEAMGF+R LVLE
Sbjct: 327 ENQAEFLRLVNESPDSGAAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMGFNRELVLE 386
Query: 373 VFFACNKNEELAANYLLDHMHEFED 397
VFFACNK+EELAANYLLDH HEFED
Sbjct: 387 VFFACNKDEELAANYLLDHGHEFED 411
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 64/74 (86%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVML 74
NKVAENSF+V+ML
Sbjct: 61 GNKVAENSFLVIML 74
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 184/269 (68%), Positives = 205/269 (76%), Gaps = 22/269 (8%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVYGQAASNLVAG+NLE +QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIP
Sbjct: 135 ADVYGQAASNLVAGNNLEHVIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIP 194
Query: 211 EQTAV-PPVARASAG-----GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
E V PPVAR + PA A A+ +GPNA PLDLFPQGLPN+G
Sbjct: 195 ETAEVAPPVARPTPSVGQAANPTAPAPAAAAAAAAASATAQAGPNAAPLDLFPQGLPNLG 254
Query: 265 SNAGAGTL----------------DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 308
+ AGAG DFLRN+ QFQALRTMVQANPQILQPMLQEL KQNP
Sbjct: 255 AGAGAGAGAGLGAGAGAGAGAGALDFLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQ 314
Query: 309 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 368
LMRLIQ+HQ DFLRL+NEPVEG EG+ QLA AMPQA+ VTPEEREAIERLEAMGFDRA
Sbjct: 315 LMRLIQDHQADFLRLVNEPVEGAEGDFFNQLAGAMPQAINVTPEEREAIERLEAMGFDRA 374
Query: 369 LVLEVFFACNKNEELAANYLLDHMHEFED 397
LV+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 375 LVIEAFLACDKNEQLAANYLLEHAGDYED 403
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 64/77 (83%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG HF+IEV+P D V +VKK IE VQG+ YP+ QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKV 77
ENKV EN+F+VVML+K
Sbjct: 61 ENKVTENTFLVVMLSKT 77
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 190/359 (52%), Positives = 231/359 (64%), Gaps = 24/359 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
EN+V EN+F+V+ML + P +Q P Q + P
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSSAAPAKVTANQ--APSTQTVPATPPQTSAAP-------- 110
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + + + + +D YGQA SNLVAGSNLE T++ IL+MGGG
Sbjct: 111 -DAPAPIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGG 169
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P QA QPA
Sbjct: 170 TWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQAVQPA 223
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
+GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQILQP+LQ
Sbjct: 224 ----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQILQPLLQ 279
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEEREAI 357
EL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE EAI
Sbjct: 280 ELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEENEAI 337
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 173/249 (69%), Positives = 197/249 (79%), Gaps = 9/249 (3%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D YGQAASNLVAGSNLE T+Q IL+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIP
Sbjct: 115 ADSYGQAASNLVAGSNLEGTIQSILEMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIP 174
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
EQ VP + Q NP QA Q AAP SGPNANPLDLFPQ LPN +NAG G
Sbjct: 175 EQMDVP---TSPPSIQPVNPVQAAQAAQTAAP---SGPNANPLDLFPQSLPNASANAGTG 228
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
LD LRN+ QFQ L +VQANPQILQP+LQELGKQNP +M+LIQE+Q +F+R+INEP+EG
Sbjct: 229 NLDVLRNNVQFQNLLGLVQANPQILQPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEG 288
Query: 331 GEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
E N +L Q+A A + + VTPEE EAI RLE MGFDRALVLEVFFACNKNE+L ANYL
Sbjct: 289 DEENEMMLDQMADAA-ETIAVTPEENEAILRLEGMGFDRALVLEVFFACNKNEQLTANYL 347
Query: 389 LDHMHEFED 397
LDHMHEF++
Sbjct: 348 LDHMHEFDN 356
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 40/51 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK 51
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGK
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGK 51
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 177/258 (68%), Positives = 209/258 (81%), Gaps = 12/258 (4%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
DVY QAASNLV+G+NLE T+QQILDMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE
Sbjct: 142 DVYSQAASNLVSGNNLEQTIQQILDMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPE 201
Query: 212 QTAVPPVARASAGGQAGNPPAQTQAQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN 266
PPVARA A GQ N A + AQ A + A ++ PNANPL+LFPQG+P+ G+N
Sbjct: 202 NVEAPPVARAPAAGQQTNQQAPSPAQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGAN 261
Query: 267 ------AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 320
AG+G LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +F
Sbjct: 262 PGVVPAAGSGALDALRQLPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEF 321
Query: 321 LRLINEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
+RL+NE EGG GN+LGQLA+AMPQ+VTVTPEEREAI+RLE MGF+ LVLEVFFACNK
Sbjct: 322 VRLVNETPEGGPGGNILGQLAAAMPQSVTVTPEEREAIQRLEGMGFNHELVLEVFFACNK 381
Query: 380 NEELAANYLLDHMHEFED 397
+EELAANYLLDH HEF++
Sbjct: 382 DEELAANYLLDHGHEFDE 399
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKV 77
N VAENSF+V+ML+K
Sbjct: 61 SNGVAENSFLVIMLSKA 77
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 177/258 (68%), Positives = 209/258 (81%), Gaps = 12/258 (4%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
DVY QAASNLV+G+NLE T+QQILDMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE
Sbjct: 142 DVYSQAASNLVSGNNLEQTIQQILDMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPE 201
Query: 212 QTAVPPVARASAGGQAGNPPAQTQAQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN 266
PPVA A A GQ N A + AQ A + A ++ PNANPL+LFPQG+P+ G+N
Sbjct: 202 NVEAPPVAGAPAAGQQTNQQAPSPAQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGAN 261
Query: 267 ------AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 320
AG+G LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +F
Sbjct: 262 PGVVPAAGSGALDALRQLPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEF 321
Query: 321 LRLINEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
+RL+NE EGG GN+LGQLA+AMPQ+VTVTPEEREAI+RLE MGF+R LVLEVFFACNK
Sbjct: 322 VRLVNETPEGGPGGNILGQLAAAMPQSVTVTPEEREAIQRLEGMGFNRELVLEVFFACNK 381
Query: 380 NEELAANYLLDHMHEFED 397
+EELAANYLLDH HEF++
Sbjct: 382 DEELAANYLLDHGHEFDE 399
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKV 77
N VAENSF+V+ML+K
Sbjct: 61 SNGVAENSFLVIMLSKA 77
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 164/253 (64%), Positives = 199/253 (78%), Gaps = 7/253 (2%)
Query: 147 LHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206
+ + ++ YGQAASNLVAG NLEAT+Q IL+MGGG+WDR+TV+RALRAA+NNPERAVEYLY
Sbjct: 119 VSTEAETYGQAASNLVAGGNLEATIQSILEMGGGTWDRDTVLRALRAAFNNPERAVEYLY 178
Query: 207 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
SGIPE +P ++ QA QPA +SGPNA+PLDLFPQ LPN +N
Sbjct: 179 SGIPEPMEIPAPPPSAQPADPVQ---ALQATQPA--VASSGPNASPLDLFPQALPNASAN 233
Query: 267 -AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
AG G LD LRN+ QF++L ++VQANPQILQP+LQELGKQNP +++LIQ++Q +FLRLIN
Sbjct: 234 AAGEGNLDVLRNNAQFRSLLSLVQANPQILQPLLQELGKQNPQILQLIQDNQAEFLRLIN 293
Query: 326 EPVEGGEG-NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
EP EG E N+L Q A +PQ + VTPEE EAI RLE MGFDRALVLEV+FACNK+E LA
Sbjct: 294 EPAEGDEDENLLDQFAEGVPQTIAVTPEENEAILRLEGMGFDRALVLEVYFACNKDETLA 353
Query: 385 ANYLLDHMHEFED 397
ANYLLDHM+EF+D
Sbjct: 354 ANYLLDHMNEFDD 366
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 42/50 (84%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQG 50
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 162/250 (64%), Positives = 196/250 (78%), Gaps = 8/250 (3%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD YGQAASNLVAGS+LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 131 SDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIP 190
Query: 211 EQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
E V PVAR A + +T A A GPN++PL++FP+ L G +AG
Sbjct: 191 ETAEVAVPVARFPA-----DQGIETGAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGL 245
Query: 270 --GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G+LDFLRN+QQFQALR+MVQANPQILQPMLQELGKQNP L+R+IQEH +FL+LINEP
Sbjct: 246 VLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRMIQEHNAEFLQLINEP 305
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
++G EG++ Q MP A+ VTP E+EAIERL AMGFDRALV+E F AC++NEELAANY
Sbjct: 306 LDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLVAMGFDRALVIEAFLACDRNEELAANY 365
Query: 388 LLDHMHEFED 397
LL++ +FED
Sbjct: 366 LLENGADFED 375
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV E+ F+VVML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 168/247 (68%), Positives = 182/247 (73%), Gaps = 36/247 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP
Sbjct: 132 TDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIP 191
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
Q +PPVA+A A G+ P Q A A T GPNANPL+LFPQG+P + AGAG
Sbjct: 192 AQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAG 251
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
LDFLRNSQQFQALR MVQANPQILQPMLQE
Sbjct: 252 NLDFLRNSQQFQALRAMVQANPQILQPMLQE----------------------------- 282
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLD
Sbjct: 283 -------QLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLD 335
Query: 391 HMHEFED 397
HMHEFED
Sbjct: 336 HMHEFED 342
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKV 77
EN V ENSF+V+ML+K
Sbjct: 60 ENNVVENSFIVIMLSKT 76
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/250 (64%), Positives = 196/250 (78%), Gaps = 8/250 (3%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD YGQAASNLVAGS+LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 105 SDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIP 164
Query: 211 EQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
E V PVAR A + +T A A GPN++PL++FP+ L G +AG
Sbjct: 165 ETAEVAVPVARFPA-----DQGIETGAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGL 219
Query: 270 --GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G+LDFLRN+QQFQALR+MVQANPQILQPMLQELGKQNP L+R+IQEH +FL+LINEP
Sbjct: 220 VLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRMIQEHNAEFLQLINEP 279
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
++G EG++ Q MP A+ VTP E+EAIERL AMGFDRALV+E F AC++NEELAANY
Sbjct: 280 LDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLVAMGFDRALVIEAFLACDRNEELAANY 339
Query: 388 LLDHMHEFED 397
LL++ +FED
Sbjct: 340 LLENGADFED 349
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV E+ F+VVML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/254 (61%), Positives = 190/254 (74%), Gaps = 12/254 (4%)
Query: 146 QLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 205
QL + SD YGQAAS LV+GS++E VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YL
Sbjct: 121 QLPAQSDTYGQAASTLVSGSSVEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYL 180
Query: 206 YSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 265
YSGIPE A+P + G A + AP + GPN++PLDLFPQ +
Sbjct: 181 YSGIPETVAIPATNLSGVGSGA----------ELTAPPASGGPNSSPLDLFPQEAVSDAG 230
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
GTL+FLR + QFQ LR+MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+N
Sbjct: 231 GGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLN 290
Query: 326 EPVEGGEG--NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
EP EG +G ++ Q MP AV VTPEE+EAI+RLEAMGFDRALV+E F AC++NEEL
Sbjct: 291 EPYEGSDGDMDIFDQPEQEMPHAVNVTPEEQEAIQRLEAMGFDRALVIEAFLACDRNEEL 350
Query: 384 AANYLLDHMHEFED 397
AANYLL+H +FED
Sbjct: 351 AANYLLEHSADFED 364
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 59/85 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGP 85
ENKV E F+VVML+K GP
Sbjct: 61 ENKVTEEGFLVVMLSKSKTPSSAGP 85
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 193/252 (76%), Gaps = 17/252 (6%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D YGQAAS LV+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 132 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIP 191
Query: 211 E--QTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
+ + AVP P A+ + G A P APA + GPN++PLDLFPQ +
Sbjct: 192 QTAEVAVPVPEAQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSG 239
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GTL+FLRN+ QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP
Sbjct: 240 DLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEP 299
Query: 328 VEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAA
Sbjct: 300 YEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAA 359
Query: 386 NYLLDHMHEFED 397
NYLL++ +FED
Sbjct: 360 NYLLENSGDFED 371
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 57/76 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E F+VVML+K
Sbjct: 61 ENKVTEEGFLVVMLSK 76
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 193/252 (76%), Gaps = 17/252 (6%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D YGQAAS LV+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 126 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIP 185
Query: 211 E--QTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
+ + AVP P A+ + G A P APA + GPN++PLDLFPQ +
Sbjct: 186 QTAEVAVPVPEAQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSG 233
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GTL+FLRN+ QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP
Sbjct: 234 DLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEP 293
Query: 328 VEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAA
Sbjct: 294 YEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAA 353
Query: 386 NYLLDHMHEFED 397
NYLL++ +FED
Sbjct: 354 NYLLENSGDFED 365
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 57/76 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E F+VVML+K
Sbjct: 61 ENKVTEEGFLVVMLSK 76
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 193/252 (76%), Gaps = 17/252 (6%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D YGQAAS LV+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 126 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIP 185
Query: 211 E--QTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
+ + AVP P A+ + G A P APA + GPN++PLDLFPQ +
Sbjct: 186 QTAEVAVPVPEAQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSG 233
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GTL+FLRN+ QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP
Sbjct: 234 DLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEP 293
Query: 328 VEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAA
Sbjct: 294 YEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAA 353
Query: 386 NYLLDHMHEFED 397
NYLL++ +FED
Sbjct: 354 NYLLENSGDFED 365
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 57/76 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E F+VVML+K
Sbjct: 61 ENKVTEEGFLVVMLSK 76
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/247 (63%), Positives = 189/247 (76%), Gaps = 6/247 (2%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
+V +Y AASNL+AGSNLE T+QQIL+MGGG+WDR+TV AL AA+NNPERA+EYLYSG
Sbjct: 131 AVPSIYDHAASNLMAGSNLETTIQQILEMGGGNWDRDTVTGALHAAFNNPERAIEYLYSG 190
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
IPE+ VP R+ GQA N + Q+ QPA P T GPN NPL+LFPQGLPNM +
Sbjct: 191 IPERADVPAAVRSLITGQAEN--SSIQSTQPAVP--TGGPNTNPLNLFPQGLPNMSAIDN 246
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
G LD LRN ++FQALR ++ NPQILQPM+QELG+QNP LM++IQ+HQ D L L+NEP
Sbjct: 247 RGDLDSLRNREEFQALRETMRENPQILQPMIQELGQQNPQLMQIIQDHQEDILDLMNEP- 305
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG E N+ QL S + VT+TPEE EAI+RLEAMGF R +V+E FFACNKNE+LAANYL
Sbjct: 306 EGDE-NLQSQLDSMISGTVTITPEENEAIQRLEAMGFHRDIVVEAFFACNKNEDLAANYL 364
Query: 389 LDHMHEF 395
LDH EF
Sbjct: 365 LDHPDEF 371
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF ++V P+D V+ VKKNIET QG+DVYPA+QQMLIHQGKVL D TTLE
Sbjct: 1 MKINVKTLKGTHFVLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV EN+FVV+ML+K
Sbjct: 61 ENKVVENNFVVIMLSK 76
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 163/255 (63%), Positives = 197/255 (77%), Gaps = 8/255 (3%)
Query: 146 QLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 205
Q + SD YGQAASNLVAGSNLE T+QQI+DMGGG+WD+ETV RALRAAYNNPERAV+YL
Sbjct: 109 QAFAQSDTYGQAASNLVAGSNLEQTLQQIMDMGGGTWDKETVTRALRAAYNNPERAVDYL 168
Query: 206 YSGIPEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
YSGIPE V PVAR A + +T A A PN++PL++FP+ + G
Sbjct: 169 YSGIPETAEVAVPVARFPA-----DQATETGAAPAAPAPAFGAPNSSPLNMFPETISGGG 223
Query: 265 SNAGAG--TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 322
AG G +LDFLRN+QQFQALR+MVQANPQILQPMLQELGKQNP L+R+IQEH +FL+
Sbjct: 224 GGAGGGLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRIIQEHHAEFLQ 283
Query: 323 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
LINEP++G EG++ Q MP A+ VTP E+EAIERLEAMGFDRALV+E F AC++NE+
Sbjct: 284 LINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEQ 343
Query: 383 LAANYLLDHMHEFED 397
LAANYLL++ +FED
Sbjct: 344 LAANYLLENAGDFED 358
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 59/76 (77%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V P D + VKKNIE QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV E+ F+VVML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/252 (62%), Positives = 192/252 (76%), Gaps = 17/252 (6%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D YGQAAS LV+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 126 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIP 185
Query: 211 E--QTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
+ + AVP P A+ + G A P APA + GPN++PLDLFPQ +
Sbjct: 186 QTAEVAVPVPEAQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSG 233
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GTL+FLRN+ Q + LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP
Sbjct: 234 DLGTLEFLRNNDQLEQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEP 293
Query: 328 VEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAA
Sbjct: 294 YEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAA 353
Query: 386 NYLLDHMHEFED 397
NYLL++ +FED
Sbjct: 354 NYLLENSGDFED 365
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 57/76 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E F+VVML+K
Sbjct: 61 ENKVTEEGFLVVMLSK 76
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 163/212 (76%), Positives = 181/212 (85%), Gaps = 4/212 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVY QAASNLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIP
Sbjct: 171 ADVYSQAASNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIP 230
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPT-SGPNANPLDLFPQGLPNMGSNA-G 268
EQ PP AR + QA NP AQ A AP+ +GPNANPLDLFPQGLPN+GS A G
Sbjct: 231 EQVEAPP-ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVG 289
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
+G+LDFLRNS QFQALR MV+ANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINEP+
Sbjct: 290 SGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPL 349
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERL 360
E GEGN+LGQLA AMPQA+TVTPEEREAI+R+
Sbjct: 350 E-GEGNILGQLAEAMPQAITVTPEEREAIQRV 380
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 73/76 (96%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSF+V+MLTK
Sbjct: 61 ENKVAENSFIVIMLTK 76
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 163/212 (76%), Positives = 181/212 (85%), Gaps = 4/212 (1%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVY QAASNLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIP
Sbjct: 171 ADVYSQAASNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIP 230
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPT-SGPNANPLDLFPQGLPNMGSNA-G 268
EQ PP AR + QA NP AQ A AP+ +GPNANPLDLFPQGLPN+GS A G
Sbjct: 231 EQVEAPP-ARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVG 289
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
+G+LDFLRNS QFQALR MV+ANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINEP+
Sbjct: 290 SGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPL 349
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERL 360
E GEGN+LGQLA AMPQA+TVTPEEREAI+R+
Sbjct: 350 E-GEGNILGQLAEAMPQAITVTPEEREAIQRV 380
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 73/76 (96%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSF+V+MLTK
Sbjct: 61 ENKVAENSFIVIMLTK 76
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/252 (66%), Positives = 193/252 (76%), Gaps = 8/252 (3%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
DVYGQAASNLVAG+ LE T+QQ++DMGGGSWDR++ RALRAAYNNPERAVEYLYSGIP+
Sbjct: 118 DVYGQAASNLVAGTGLEQTIQQLVDMGGGSWDRDSCARALRAAYNNPERAVEYLYSGIPD 177
Query: 212 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGA 269
PPVARA A + A PAP T GPNA PLDLFPQ G
Sbjct: 178 VADAPPVARAPPAAPAAATAPPSAAPTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGN 237
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLRN+ QFQALRTMVQ NPQ+LQPMLQELG+QNP L+RLI E+ +FLRLI+E
Sbjct: 238 GALDFLRNNAQFQALRTMVQQNPQLLQPMLQELGRQNPQLLRLINENHVEFLRLISE--A 295
Query: 330 GGE----GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
GGE G++LGQLA AMPQ+++VTPEEREAIERLEAMGFDRA V+E F AC+KNE+LAA
Sbjct: 296 GGENPEAGDLLGQLAGAMPQSISVTPEEREAIERLEAMGFDRASVIEAFLACDKNEQLAA 355
Query: 386 NYLLDHMHEFED 397
NYLL+H ++ED
Sbjct: 356 NYLLEHSGDYED 367
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 63/76 (82%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV+EN F+VVMLTK
Sbjct: 61 ENKVSENGFLVVMLTK 76
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 159/250 (63%), Positives = 188/250 (75%), Gaps = 11/250 (4%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
D YGQAASNLV+G+NLE T+Q+I+DMGGGSWDRETV RALRAAYNNPERAV+YLYSGIPE
Sbjct: 132 DTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPE 191
Query: 212 QTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQ---GLPNMGSNA 267
V PVAR G A AP + GPN++PL++FPQ G
Sbjct: 192 TAEVAAPVARPPTG-------QPIDAGGATAPPVSGGPNSSPLNMFPQESLAAAAGGGGG 244
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G+L+FLRN+ QFQALR+MVQANPQILQ MLQELGKQNP L+RLIQ+HQ +FL+LINEP
Sbjct: 245 SLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEP 304
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
+EG EG++ Q MP A+ VTP E++AIERLEAMGFDR V+E F AC++NEELAANY
Sbjct: 305 LEGFEGDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACDRNEELAANY 364
Query: 388 LLDHMHEFED 397
LL+H EFED
Sbjct: 365 LLEHGGEFED 374
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 62/76 (81%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HF+IEV+P D V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60
Query: 61 ENKVAENSFVVVMLTK 76
ENK+ E+ F+VVML+K
Sbjct: 61 ENKITEDGFLVVMLSK 76
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 174/263 (66%), Positives = 203/263 (77%), Gaps = 18/263 (6%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVY QAASNLV+G LE TVQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIP
Sbjct: 152 ADVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIP 211
Query: 211 EQT-AVPPVARASAGGQAGNPPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLP 261
E A P + QA N A +QAQ AAP P ++GPNANPL+LFPQG+P
Sbjct: 212 ESVEAPPVARAPAPAQQAQNLQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVP 269
Query: 262 N------MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 315
+ G AGAG LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE
Sbjct: 270 SGGANAGAGVGAGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQE 329
Query: 316 HQTDFLRLINE-PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 374
+Q +FLRL+NE P G GN+LG LA+ MPQAV VTPEEREAI+RLE+MGF+R LVLEVF
Sbjct: 330 NQAEFLRLVNETPESGAGGNILGALAAQMPQAVQVTPEEREAIQRLESMGFNRELVLEVF 389
Query: 375 FACNKNEELAANYLLDHMHEFED 397
FACN++EELAANYLLDH HEFE+
Sbjct: 390 FACNRDEELAANYLLDHGHEFEE 412
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 62/76 (81%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTK 76
NKVAENSF+V+ML+K
Sbjct: 61 ANKVAENSFLVIMLSK 76
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 159/250 (63%), Positives = 188/250 (75%), Gaps = 11/250 (4%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
D YGQAASNLV+G+NLE T+Q+I+DMGGGSWDRETV RALRAAYNNPERAV+YLYSGIPE
Sbjct: 144 DTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPE 203
Query: 212 QTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQ---GLPNMGSNA 267
V PVAR G A AP + GPN++PL++FPQ G
Sbjct: 204 TAEVAAPVARPPTG-------QPIDAGGATAPPVSGGPNSSPLNMFPQESLAAAAGGGGG 256
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G+L+FLRN+ QFQALR+MVQANPQILQ MLQELGKQNP L+RLIQ+HQ +FL+LINEP
Sbjct: 257 SLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEP 316
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
+EG EG++ Q MP A+ VTP E++AIERLEAMGFDR V+E F AC++NEELAANY
Sbjct: 317 LEGFEGDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACDRNEELAANY 376
Query: 388 LLDHMHEFED 397
LL+H EFED
Sbjct: 377 LLEHGGEFED 386
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 42/51 (82%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
VKKNIE VQG D YP SQQ+LIH GKVLKD TTL ENK+ E+ F+VVML+K
Sbjct: 38 VKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSK 88
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 158/252 (62%), Positives = 188/252 (74%), Gaps = 13/252 (5%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D YGQAASNLVAG+NLE TVQQ++DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIP
Sbjct: 158 TDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIP 217
Query: 211 EQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGS 265
E V PV R +G Q + PAP SG PN PL++FPQ + G
Sbjct: 218 ESAEVAVPVGRFGSG--------QATETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGG 269
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
G+L+FLRN+ QFQALRTMV NPQILQPMLQELGKQNP L+RLIQ+H +FL+LIN
Sbjct: 270 GGNLGSLEFLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLIN 329
Query: 326 EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
EPV+ EG + Q MP A+ VTP E+ AIERLEAMGFDRALV+E F AC++NEELAA
Sbjct: 330 EPVDNFEGEMFEQAEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAA 389
Query: 386 NYLLDHMHEFED 397
NYLL++ +F+D
Sbjct: 390 NYLLENSGDFDD 401
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 59/76 (77%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV+E F+VVML+K
Sbjct: 61 ENKVSEEGFLVVMLSK 76
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 156/254 (61%), Positives = 191/254 (75%), Gaps = 9/254 (3%)
Query: 144 LLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVE 203
L+Q H ++ YGQAASNLVAGSNLE T+QQ++DMGGGSWDR+TV ALRAAYNNPERAV+
Sbjct: 107 LVQPHVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTCALRAAYNNPERAVD 166
Query: 204 YLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPN 262
YLYSGIP VA A A P +QT A+ G PN++PL++FPQ +
Sbjct: 167 YLYSGIP-------VAAEIAVPAASYPISQTTETGGASVGAVPGVPNSSPLNMFPQETIS 219
Query: 263 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 322
G+ A G+LDFLRN+ QFQALR+MVQ+NPQILQP+LQELGKQNP L+ LIQEH +FL+
Sbjct: 220 -GAGAEIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFLQ 278
Query: 323 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
LINEPVEG EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E F AC+ +E+
Sbjct: 279 LINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDHDEQ 338
Query: 383 LAANYLLDHMHEFE 396
LAANYLL++ +FE
Sbjct: 339 LAANYLLENAGDFE 352
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV+E+ F+VVML+K
Sbjct: 61 DNKVSEDGFLVVMLSK 76
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/250 (62%), Positives = 193/250 (77%), Gaps = 11/250 (4%)
Query: 150 VSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 209
++D YGQAASN+V+ ++LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGI
Sbjct: 159 LADTYGQAASNIVSANHLEQTIQQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGI 218
Query: 210 PEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNA 267
PE V PVA PA + A AP SG PN++PL++FPQ + +
Sbjct: 219 PEAAEVAVPVAHF---------PADQETGGAAPAAPASGVPNSSPLNMFPQETLSGAAGG 269
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G G+L+FLRN+ QFQALR MVQANPQILQPMLQELGKQNPHL+RLIQEH +FL+LINEP
Sbjct: 270 GLGSLEFLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEP 329
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
+EG EG++ Q +P A+ VTP E+EAIERLEAMGFDRALV+E F AC++NEELA NY
Sbjct: 330 LEGSEGDIFDQPEQELPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNY 389
Query: 388 LLDHMHEFED 397
LL++ ++ED
Sbjct: 390 LLENAGDYED 399
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E+ F+VVML+K
Sbjct: 61 ENKVTEDGFLVVMLSK 76
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 151/249 (60%), Positives = 191/249 (76%), Gaps = 8/249 (3%)
Query: 150 VSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 209
++D YGQAASN+V+ ++LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGI
Sbjct: 159 LADTYGQAASNIVSANHLEQTIQQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGI 218
Query: 210 PEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
PE V PVA A +T + A + PN++PL++FPQ + + G
Sbjct: 219 PEAAEVAVPVAHFPAD-------QETGSGAAPAAPASGVPNSSPLNMFPQETLSGAAGGG 271
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
G+L+FLRN+ QFQALR MVQANPQILQPMLQELGKQNPHL+RLIQEH +FL+LINEP+
Sbjct: 272 LGSLEFLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPL 331
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG EG++ Q +P A+ VTP E+EAIERLEAMGFDRALV+E F AC++NEELA NYL
Sbjct: 332 EGSEGDIFDQPEQELPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYL 391
Query: 389 LDHMHEFED 397
L++ ++ED
Sbjct: 392 LENAGDYED 400
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E+ F+VVML+K
Sbjct: 61 ENKVTEDGFLVVMLSK 76
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 189/252 (75%), Gaps = 13/252 (5%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D YG+AASNLVAG NLE T+QQI+DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 116 TDTYGEAASNLVAGDNLEQTIQQIMDMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIP 175
Query: 211 EQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGS 265
E V PVA AG Q A AP SG PN++PL++FPQ GS
Sbjct: 176 ETAEVAVPVAHLPAG--------QATETGAAPAAPLSGVPNSSPLNMFPQEALSAAGGGS 227
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
G G+LDFLRN+ QFQ LR+MVQANPQILQPMLQELGKQNP L+R+IQEH +FL+L+N
Sbjct: 228 AGGLGSLDFLRNNAQFQTLRSMVQANPQILQPMLQELGKQNPQLLRMIQEHHAEFLQLLN 287
Query: 326 EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
EP+EG EG++ Q MP A+ VTP E+ AIERL AMGFDRALV+E F AC++NE LAA
Sbjct: 288 EPLEGSEGDIFDQGEQDMPHAINVTPAEQAAIERLVAMGFDRALVIEAFLACDRNEVLAA 347
Query: 386 NYLLDHMHEFED 397
NYLL++ +FED
Sbjct: 348 NYLLENGGDFED 359
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 58/74 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVML 74
+NKV E+ F+VVML
Sbjct: 61 DNKVTEDGFLVVML 74
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 168/255 (65%), Positives = 192/255 (75%), Gaps = 7/255 (2%)
Query: 147 LHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206
D YGQAASNLVAGS LE+TVQQI+DMGGG+WDR+TV+RALRAA+NNPERAVEYLY
Sbjct: 139 CRGTGDGYGQAASNLVAGSALESTVQQIMDMGGGTWDRDTVLRALRAAFNNPERAVEYLY 198
Query: 207 SGIPEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTS---GPNANPLDLFPQGLP- 261
SGIPE VP PVAR G A A A A + GPNA PLDLFPQG+P
Sbjct: 199 SGIPEAAEVPAPVARGPPAGGAPVAAAPAGPGAAGAAAVAANPQGPNAAPLDLFPQGMPG 258
Query: 262 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
G AG G LDFLRN+ QFQALRTMVQANPQILQPMLQELGKQNP L+RLI E+Q +FL
Sbjct: 259 AGGGGAGLGALDFLRNNPQFQALRTMVQANPQILQPMLQELGKQNPALLRLINENQAEFL 318
Query: 322 RLIN--EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
RLIN G+ +G+LA PQ+V VTPEERE+IERLEAMGF+RALV+E F AC+K
Sbjct: 319 RLINEAGAEGAEGGDAVGRLAGGYPQSVNVTPEERESIERLEAMGFNRALVIEAFLACDK 378
Query: 380 NEELAANYLLDHMHE 394
NE+LAANYLL+H ++
Sbjct: 379 NEQLAANYLLEHAND 393
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++ V ++ VS VK+ IE +QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLHVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQ 82
+NKVAEN F+VVMLTKV R H+
Sbjct: 61 DNKVAENGFLVVMLTKV-RLHE 81
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/250 (67%), Positives = 193/250 (77%), Gaps = 15/250 (6%)
Query: 154 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 213
YGQAASNLVAG+ LE TVQQI+DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIPE
Sbjct: 129 YGQAASNLVAGNVLETTVQQIMDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPESA 188
Query: 214 AVPPVARASAGGQAGNPPA-----QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
+ PV G PA PA AP GPNA PLDLFPQG+P M G
Sbjct: 189 EMRPV--------GGRSPAVAGVPAATPAAPAQAAPAGGPNAAPLDLFPQGMPGMAGGGG 240
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP- 327
AG LDFLRN+ Q +LRTMVQANPQILQPMLQELGKQNP L+RLI ++Q +FLRLINE
Sbjct: 241 AGALDFLRNNPQ-ASLRTMVQANPQILQPMLQELGKQNPALLRLINDNQAEFLRLINEAG 299
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EG EG++LGQLA AMPQ++ VTPEEREAI+RLE MGF+R LV+E F AC+KNE+LAANY
Sbjct: 300 AEGAEGDILGQLAGAMPQSINVTPEEREAIDRLEGMGFERTLVIEAFLACDKNEQLAANY 359
Query: 388 LLDHMHEFED 397
LL+H ++ED
Sbjct: 360 LLEHAGDYED 369
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++EV P D V +VK+ IE QG + +P SQQ+LIHQGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKV 77
ENKV+EN FVVVMLTK
Sbjct: 61 ENKVSENGFVVVMLTKA 77
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 150/249 (60%), Positives = 180/249 (72%), Gaps = 5/249 (2%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
SD YG+AASN+VAGSNLE T+Q I+DMGGG WD V RALRAAYNNPERAV+YLYSGIP
Sbjct: 134 SDTYGEAASNVVAGSNLEQTIQHIMDMGGGMWDTNMVSRALRAAYNNPERAVDYLYSGIP 193
Query: 211 E--QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
E + AVP AGN AAP PN+ PL++FPQ + + AG
Sbjct: 194 EMAEAAVPVSHFQGDQINAGNNAISDNGVAGAAPG---APNSLPLNMFPQETLSGVTGAG 250
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
G+L+FLRN+ QFQ LR+MVQ NPQILQPML ELGKQNP L+R IQEH +FL+LINEPV
Sbjct: 251 LGSLEFLRNNPQFQTLRSMVQRNPQILQPMLLELGKQNPQLLRQIQEHHEEFLQLINEPV 310
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
E EG++ Q +PQ +TVT ++EAIERLEAMGFDR LV+E F AC++NEELA NYL
Sbjct: 311 EASEGDMFDQPEQDVPQEITVTAADQEAIERLEAMGFDRGLVIEAFLACDRNEELAVNYL 370
Query: 389 LDHMHEFED 397
L++ +FED
Sbjct: 371 LENAGDFED 379
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 60/84 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI +P D V +KKNIE +QG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVG 84
E+K++E+ F+VVML K G
Sbjct: 61 ESKISEDGFLVVMLGKSKTMSSTG 84
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 173/223 (77%), Gaps = 13/223 (5%)
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 236
MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P QA
Sbjct: 1 MGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQA 54
Query: 237 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 296
QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 55 VQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQILQ 110
Query: 297 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEER 354
P+LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE
Sbjct: 111 PLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEEN 169
Query: 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EAI RLE MGFDRALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 170 EAILRLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 212
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 174/223 (78%), Gaps = 9/223 (4%)
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 236
MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP QA
Sbjct: 1 MGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQA 57
Query: 237 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 296
Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 58 AQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQ 114
Query: 297 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEER 354
P+LQELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPEE
Sbjct: 115 PLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADAA-ETIAVTPEEN 173
Query: 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EAI RLE MGFDRALVLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 174 EAILRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 216
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 147/221 (66%), Positives = 174/221 (78%), Gaps = 12/221 (5%)
Query: 154 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 213
Y QAASNLV+G+NLE T+QQILDMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE
Sbjct: 147 YSQAASNLVSGNNLEQTIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENV 206
Query: 214 AVPPVARASAGGQAGN----PPAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN-- 266
PVARA A GQ N PAQ P P+P S GPNANPL+LFPQG+P+ GSN
Sbjct: 207 EAQPVARAPAAGQQTNQQAASPAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPG 266
Query: 267 ----AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 322
AG+G LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLR
Sbjct: 267 VVPGAGSGALDALRQLPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLR 326
Query: 323 LINEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEA 362
L+NE EGG GN+LGQLA+A+PQ +TVTPEEREAI+R ++
Sbjct: 327 LVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREAIQRCKS 367
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 61/77 (79%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKV 77
N VAENSF+V+ML+K
Sbjct: 61 SNGVAENSFLVIMLSKA 77
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 153/245 (62%), Positives = 187/245 (76%), Gaps = 14/245 (5%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+ YGQAASNL++GSNL+ T+ Q+++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP
Sbjct: 130 SNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIP 189
Query: 211 --EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNA 267
+ AVP AGGQ N + ++ A SG PNA+PL+LFPQG N G A
Sbjct: 190 ITAEVAVP------AGGQGANTTEPSSTRE----ASLSGIPNASPLNLFPQGDANDGGGA 239
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G GTL+FLR++QQFQALR MV NPQILQPMLQEL K+NP L+RLIQE+ +FL+LINEP
Sbjct: 240 GGGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEP 299
Query: 328 VEGGEGNVLGQLA-SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+G +G+ L Q MP ++ VTPEE+EAI RLE MGFDRA V+E FFAC++NE+LAAN
Sbjct: 300 FDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAAN 359
Query: 387 YLLDH 391
YLL+H
Sbjct: 360 YLLEH 364
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 57/74 (77%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVML 74
ENKV+E F+VVML
Sbjct: 61 ENKVSEVGFLVVML 74
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 153/245 (62%), Positives = 187/245 (76%), Gaps = 14/245 (5%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+ YGQAASNL++GSNL+ T+ Q+++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP
Sbjct: 130 SNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIP 189
Query: 211 --EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNA 267
+ AVP AGGQ N + ++ A SG PNA+PL+LFPQG N G A
Sbjct: 190 ITAEVAVP------AGGQGANTTEPSSTRE----ASLSGIPNASPLNLFPQGDANDGDGA 239
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G GTL+FLR++QQFQALR MV NPQILQPMLQEL K+NP L+RLIQE+ +FL+LINEP
Sbjct: 240 GGGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEP 299
Query: 328 VEGGEGNVLGQLA-SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+G +G+ L Q MP ++ VTPEE+EAI RLE MGFDRA V+E FFAC++NE+LAAN
Sbjct: 300 FDGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAAN 359
Query: 387 YLLDH 391
YLL+H
Sbjct: 360 YLLEH 364
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 57/74 (77%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVML 74
ENKV+E F+VVML
Sbjct: 61 ENKVSEVGFLVVML 74
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 186/257 (72%), Gaps = 16/257 (6%)
Query: 145 LQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEY 204
L +D YGQAASNLVAGS+LE T+QQI+D+GGGSWDR+TV RALRAAYNNP+RAV+Y
Sbjct: 40 FTLDVTTDTYGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKRAVDY 99
Query: 205 LYSGIPE--QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP--NANPLDLFPQGL 260
LYS IPE + AVP A P +QT GP N++PL++ PQ +
Sbjct: 100 LYSRIPEAAEIAVP---------AAPYPISQTTETGGVTAGAVWGPVPNSSPLNMSPQVI 150
Query: 261 PNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 320
P G+ AG G+L+ + Q+FQALR+MVQ+NPQILQP+LQELGKQN L RLIQEH +F
Sbjct: 151 PVSGAGAGIGSLELYKKCQEFQALRSMVQSNPQILQPVLQELGKQNLSLSRLIQEHHGEF 210
Query: 321 LRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 380
L+LIN+PVEG EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E AC+++
Sbjct: 211 LQLINDPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIE---ACDRD 267
Query: 381 EELAANYLLDHMHEFED 397
E+LAANYLL++ +FED
Sbjct: 268 EQLAANYLLENAGDFED 284
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/243 (60%), Positives = 180/243 (74%), Gaps = 13/243 (5%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTA 214
AAS+L++GSNL+ + QI++MGGGSWDR+ V RALRAAYNNPERA++YLYSGIP + A
Sbjct: 135 AASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAIDYLYSGIPVTAEVA 194
Query: 215 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 274
VP V GQ N T A P + PN PLDLFPQG + G AG G+LDF
Sbjct: 195 VPVV------GQGAN----TTAAAPGETGLSGIPNTAPLDLFPQGASHAGGAAGGGSLDF 244
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
LRN+QQFQALR MV NPQILQPMLQEL KQNP L+RLIQE+ +FL+L+NE EGG+G+
Sbjct: 245 LRNNQQFQALREMVHTNPQILQPMLQELSKQNPQLLRLIQENNDEFLQLLNETFEGGDGD 304
Query: 335 VLGQLA-SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 393
L Q MP A++VTPEE+EAI RLEAMGF+RA V+E FFAC++NE+LAANYLL+H
Sbjct: 305 FLDQADQDEMPHAISVTPEEQEAIGRLEAMGFERARVIEAFFACDRNEQLAANYLLEHAG 364
Query: 394 EFE 396
+ E
Sbjct: 365 DEE 367
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 57/74 (77%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQHNDTIMAVKKNIEEIQGKDSYPWGQQLLIHNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVML 74
EN+V E F+VVML
Sbjct: 61 ENQVGEAGFLVVML 74
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 141/192 (73%), Positives = 156/192 (81%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP
Sbjct: 132 TDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIP 191
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
Q +PPVA+A A G+ P Q A A T GPNANPL+LFPQG+P + AGAG
Sbjct: 192 AQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAG 251
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVEG
Sbjct: 252 NLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEG 311
Query: 331 GEGNVLGQLASA 342
E G + S+
Sbjct: 312 EEWECYGTVGSS 323
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKV 77
EN V ENSF+V+ML+K
Sbjct: 60 ENNVVENSFIVIMLSKT 76
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 148/247 (59%), Positives = 181/247 (73%), Gaps = 14/247 (5%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 210
+ Y AAS+L++GSN++ + Q+++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP
Sbjct: 131 NTYDNAASSLLSGSNVDTMINQLMEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPV 190
Query: 211 -EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAG 268
+ AVP GGQ N T + P A SG PN PL+LFPQG N G AG
Sbjct: 191 TAEVAVP------IGGQGAN----TTDRAPTGEAGLSGIPNTAPLNLFPQGGSNAGGGAG 240
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
G LDFLRN+QQFQA+R MV NPQILQPML EL KQNP ++RLI+E+ +FL+L+NEP
Sbjct: 241 GGPLDFLRNNQQFQAVREMVHTNPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPF 300
Query: 329 EGGEGNVLGQL-ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EGGEG+ L Q MP A++VTPEE++AI RLE+MGFDRA V+E F AC++NEELAANY
Sbjct: 301 EGGEGDFLDQPEEDEMPHAISVTPEEQDAIGRLESMGFDRARVIEAFIACDRNEELAANY 360
Query: 388 LLDHMHE 394
LL+H E
Sbjct: 361 LLEHAGE 367
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 58/74 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVML 74
ENKV E+ F+VVML
Sbjct: 61 ENKVNEDGFLVVML 74
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/247 (59%), Positives = 179/247 (72%), Gaps = 14/247 (5%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 210
+ + AASNL++G N++ + Q+++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP
Sbjct: 130 NTHDNAASNLLSGRNVDTIINQLMEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPV 189
Query: 211 -EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAG 268
+ AVP GGQ N T + P A SG PN PLDLFPQG N G AG
Sbjct: 190 TAEIAVP------IGGQGAN----TTDRAPTGEAGLSGIPNTAPLDLFPQGASNAGGGAG 239
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
G LDFLRN+ QFQA+R MV NPQILQPML EL KQNP ++RLI+E+ +FL+L+NEP
Sbjct: 240 GGPLDFLRNNPQFQAVREMVHTNPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPF 299
Query: 329 EGGEGNVLGQL-ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EGGEG+ L Q MP A++VTPEE+EAI RLE+MGFDRA V+E F AC++NEELAANY
Sbjct: 300 EGGEGDFLDQPEEDEMPHAISVTPEEQEAIGRLESMGFDRARVIEAFLACDRNEELAANY 359
Query: 388 LLDHMHE 394
LL+H E
Sbjct: 360 LLEHAGE 366
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 58/74 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVML 74
ENKV E+ F+VVML
Sbjct: 61 ENKVNEDGFLVVML 74
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 145/242 (59%), Positives = 175/242 (72%), Gaps = 12/242 (4%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAV 215
AS+L++GSNL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YLYSGIP + AV
Sbjct: 136 ASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEVAV 195
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
P G Q N T A P + PN PL+LFPQG N G AG G+LDFL
Sbjct: 196 P------VGPQGAN---STDAAPPGVTGLSGIPNTAPLNLFPQGASNAGGAAGGGSLDFL 246
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 335
RN+QQFQALR MV NPQILQPMLQEL KQNP L+RLIQE+ +FL L+NE + G+G+
Sbjct: 247 RNNQQFQALREMVHTNPQILQPMLQELSKQNPQLLRLIQENNDEFLGLLNENFDAGDGDF 306
Query: 336 LGQL-ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
L Q MP A++VTPEE+EAI RLEAMGFDRA V+E FFAC++NE+LA NYLL+H +
Sbjct: 307 LDQPDEDEMPHAISVTPEEQEAIGRLEAMGFDRARVIEAFFACDRNEQLAVNYLLEHAGD 366
Query: 395 FE 396
E
Sbjct: 367 EE 368
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GK+LKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
EN+V+E+ +VVML+K
Sbjct: 61 ENQVSEDGSLVVMLSK 76
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/248 (59%), Positives = 179/248 (72%), Gaps = 15/248 (6%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 210
+ + AASNL++G N++ + Q+++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP
Sbjct: 130 NTHDNAASNLLSGRNVDTIINQLMEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPV 189
Query: 211 -EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ-GLPNMGSNA 267
+ AVP GGQ N T + P A SG PN PLDLFPQ G N G A
Sbjct: 190 TAEIAVP------IGGQGAN----TTDRAPTGEAGLSGIPNTAPLDLFPQQGASNAGGGA 239
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G G LDFLRN+ QFQA+R MV NPQILQPML EL KQNP ++RLI+E+ +FL+L+NEP
Sbjct: 240 GGGPLDFLRNNPQFQAVREMVHTNPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEP 299
Query: 328 VEGGEGNVLGQL-ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
EGGEG+ L Q MP A++VTPEE+EAI RLE+MGFDRA V+E F AC++NEELAAN
Sbjct: 300 FEGGEGDFLDQPEEDEMPHAISVTPEEQEAIGRLESMGFDRARVIEAFLACDRNEELAAN 359
Query: 387 YLLDHMHE 394
YLL+H E
Sbjct: 360 YLLEHAGE 367
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 58/74 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVML 74
ENKV E+ F+VVML
Sbjct: 61 ENKVNEDGFLVVML 74
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 137/230 (59%), Positives = 167/230 (72%), Gaps = 26/230 (11%)
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 236
MGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE V A A
Sbjct: 1 MGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVPAA 44
Query: 237 QQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 287
Q P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALRTM
Sbjct: 45 QYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALRTM 103
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 347
VQ+NPQILQP+LQELGKQNP L+RLI EH ++FL+LINEP++G EG+ Q MP AV
Sbjct: 104 VQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAV 163
Query: 348 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 164 NVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 213
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/243 (60%), Positives = 174/243 (71%), Gaps = 25/243 (10%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVY QAASNLV+G LE TVQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIP
Sbjct: 152 ADVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIP 211
Query: 211 EQT-AVPPVARASAGGQAGNPPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLP 261
E A P + QA N A +QAQ AAP P ++GPNANPL+LFPQG+P
Sbjct: 212 ESVEAPPVARAPAPAQQAQNLQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVP 269
Query: 262 N------MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 315
+ G AGAG LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE
Sbjct: 270 SGGANAGAGVGAGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQE 329
Query: 316 HQTDFLRLINE-PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 374
+Q +FLRL+NE P G GN+LG LA+ MPQAV VTPEEREAI+R++ +L +
Sbjct: 330 NQAEFLRLVNETPESGAGGNILGALAAQMPQAVQVTPEEREAIQRVQ-------YILMIC 382
Query: 375 FAC 377
F C
Sbjct: 383 FLC 385
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 62/76 (81%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTK 76
NKVAENSF+V+ML+K
Sbjct: 61 ANKVAENSFLVIMLSK 76
>gi|327493261|gb|AEA86337.1| putative DNA repair protein [Solanum nigrum]
Length = 166
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/166 (79%), Positives = 140/166 (84%), Gaps = 2/166 (1%)
Query: 207 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
SGIPE VPPVA + QAGN PAQ Q AP P GPNA+PL+LFPQGLP++GSN
Sbjct: 1 SGIPEAAEVPPVAGSPPSVQAGNQPAQPQPAAQPAPIPAGGPNADPLNLFPQGLPSVGSN 60
Query: 267 -AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
AGA TLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLIN
Sbjct: 61 TAGANTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLIN 120
Query: 326 EPVEGGEG-NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 370
EPVEGGEG NVLGQLA+AMPQA++VTPEEREAIERLE MGFD LV
Sbjct: 121 EPVEGGEGTNVLGQLAAAMPQAISVTPEEREAIERLEQMGFDHDLV 166
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/280 (45%), Positives = 157/280 (56%), Gaps = 44/280 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV E F+VVML+K GP QL P Q + + +
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQL------------AAPSTTQSIAVPASNSTP 108
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ Q + SD YGQAAS LV+GS++E VQQI++MGGG
Sbjct: 109 VQE----------------------QPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGG 146
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
SWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G ++
Sbjct: 147 SWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVG----------SGRELT 196
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 280
AP P+ GPN++PLDLFPQ + + GTL+FLR + Q
Sbjct: 197 APPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQ 236
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 117/194 (60%), Positives = 146/194 (75%), Gaps = 5/194 (2%)
Query: 145 LQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEY 204
L L ++D YGQAASN+V+ ++LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+Y
Sbjct: 156 LPLSVLADTYGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDY 215
Query: 205 LYSGIPEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGP----NANPLDLFPQG 259
LYSGIPE V PVA A + G + T A + AP + N++PL++FPQ
Sbjct: 216 LYSGIPEAAEVAVPVAHFPADQETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQE 275
Query: 260 LPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 319
+ + G G+L+FLRN+ QFQALR MVQANPQILQPMLQELGKQNPHL+RLIQEH +
Sbjct: 276 TLSGAAAGGLGSLEFLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAE 335
Query: 320 FLRLINEPVEGGEG 333
FL+LINEP+EG EG
Sbjct: 336 FLQLINEPLEGSEG 349
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/135 (80%), Positives = 116/135 (85%), Gaps = 4/135 (2%)
Query: 147 LHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206
+ S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY
Sbjct: 167 VGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLY 226
Query: 207 SGIPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 265
+GIPEQ VPPVAR A GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G
Sbjct: 227 TGIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGG 283
Query: 266 NAGAGTLDFLRNSQQ 280
N GAGTLDFLRNSQQ
Sbjct: 284 NPGAGTLDFLRNSQQ 298
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSF+V+M+ K
Sbjct: 61 ENKVAENSFIVIMMNK 76
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 149/415 (35%), Positives = 213/415 (51%), Gaps = 55/415 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQV-----------GPQLFQLHQQIRPK---LQVLRLLPR 106
E K+ E FVVVM+TK V PQ + P +P
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 107 HNQRLHLRLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSN 166
N L + + + + + Q S+ DV A S LV G
Sbjct: 121 -NTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDV---ATSALVTGQQ 176
Query: 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG- 225
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + A R+S
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERA-----RSSVNNP 228
Query: 226 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 285
Q A T + QPAAPAPTS N L+FLRN QF +R
Sbjct: 229 QQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQPQFHQMR 267
Query: 286 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 345
++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V + SA Q
Sbjct: 268 QILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQ 325
Query: 346 AVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 326 QMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLL--QQNFDD 378
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 212/415 (51%), Gaps = 55/415 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQV-----------GPQLFQLHQQIRPK---LQVLRLLPR 106
E K+ E FVVVM+TK V PQ + P +P
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 107 HNQRLHLRLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSN 166
N L + + + + + Q + DV A S LV G
Sbjct: 121 -NTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSGLFDV---ATSALVTGQQ 176
Query: 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG- 225
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR+S
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----ARSSVNNP 228
Query: 226 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 285
Q A T + QPAAPAPTS N L+FLRN QF +R
Sbjct: 229 QQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQPQFHQMR 267
Query: 286 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 345
++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V + SA Q
Sbjct: 268 QILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQ 325
Query: 346 AVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 326 QMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLL--QQNFDD 378
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 212/415 (51%), Gaps = 55/415 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQV-----------GPQLFQLHQQIRPK---LQVLRLLPR 106
E K+ E FVVVM+TK V PQ + P +P
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASSPTATTETVPT 120
Query: 107 HNQRLHLRLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSN 166
N L + + + + + Q S+ DV A S LV G
Sbjct: 121 -NTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDV---ATSALVTGQQ 176
Query: 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG- 225
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + A R+S
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERA-----RSSVNNP 228
Query: 226 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 285
Q A T + QPAAPAPTS N L+FLRN QF +R
Sbjct: 229 QQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQPQFHQMR 267
Query: 286 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 345
++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V + SA Q
Sbjct: 268 QILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQ 325
Query: 346 AVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ VTP+E+EAIERL+A+GF LV++ +FAC KN LAAN+LL F+D
Sbjct: 326 QMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNGNLAANFLL--QQNFDD 378
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 213/416 (51%), Gaps = 57/416 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQV-----------GPQLFQLHQQIRP---KLQVLRLLPR 106
E K+ E FVVVM+TK V PQ + P +P
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPVSSPTATTETVPT 120
Query: 107 HNQRLHLRLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSN 166
N L + + + + Q S+ DV A S LV G
Sbjct: 121 -NTSNELNTAEKPTEKSDEISTSTSTSPSASTIRTSGGAQGSSLFDV---ATSALVTGQQ 176
Query: 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVARASAGG 225
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP E+T R+S
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERT------RSSVNN 227
Query: 226 -QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 284
Q A T + QPAAPAPTS N L+FLRN QF +
Sbjct: 228 PQQTTGTAWTGSAQPAAPAPTSRENP---------------------LEFLRNQPQFHQM 266
Query: 285 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 344
R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V + SA
Sbjct: 267 RQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGE 324
Query: 345 QAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
Q + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 325 QQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLL--QQNFDD 378
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 147/438 (33%), Positives = 223/438 (50%), Gaps = 68/438 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ KTL+G F++E +D V++VK+ + VQG + S + LI GKVL + L
Sbjct: 1 MKLRFKTLQGKEFDLETSLDDTVAEVKRKVAAVQGFEQDALSCR-LIFSGKVLSNENEKL 59
Query: 60 EENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQL 119
++ V E+SF+VVM K +G + Q + R + + +
Sbjct: 60 QDLNVKEDSFLVVMPPKKTYQKTMGQSSSKTDAQGKEAETT-----RQKETTSESVQEKQ 114
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
+++N + S S +S+ V GS E TV+ +++MG
Sbjct: 115 SSTTAVTINNNDRDET----------KATSSSQPTSGTSSDFVIGSQYETTVKNLMEMG- 163
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAGGQAGNPPA 232
++ + V RALRAA++NP+RAVEYL++GIPE QT++P G
Sbjct: 164 --FEEQQVKRALRAAFHNPDRAVEYLFNGIPENLERELGQTSLPERTSPQVGH---TDRT 218
Query: 233 QTQAQQPAAPAPTS----GPNANPLDLF-PQ--------GLPNMGSNAGAGTLDFLRNSQ 279
TQ + + +S ++ P ++F PQ G + GS G+LDFL
Sbjct: 219 ATQENRTGSSGVSSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGS---TGSLDFLTRIP 275
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG------ 333
QF +R ++QANP+ILQPMLQEL + NP L+ LI ++Q +F+RL+NEP E EG
Sbjct: 276 QFNVMRRLIQANPRILQPMLQELAQANPSLLDLIHQNQQEFVRLLNEPTEDSEGLSDEQV 335
Query: 334 ----NVLGQLA--------SAMPQAVTVTPEEREAIERLEA----MGFDRALVLEVFFAC 377
N + L+ S+ + V+PEERE IERLE+ MG RA +LE + AC
Sbjct: 336 QELLNSISGLSEGGNTGEESSGVSYIQVSPEEREQIERLESLVGPMGVSRAAILEAWLAC 395
Query: 378 NKNEELAANYLLDHMHEF 395
++NEELAANY+L ++ E+
Sbjct: 396 DRNEELAANYILSNLEEY 413
>gi|327493259|gb|AEA86336.1| putative DNA repair protein [Solanum nigrum]
Length = 172
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/182 (58%), Positives = 130/182 (71%), Gaps = 13/182 (7%)
Query: 218 VARASAGGQAGN--PPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDF 274
VAR AG PP AP+SG PN+ PL+LFPQ AG G+LDF
Sbjct: 1 VARGGVNSAAGTTAPPT----------APSSGTPNSAPLNLFPQENVAGAGGAGLGSLDF 50
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
L N+QQFQALR+MVQANPQIL+PMLQELGKQNP L+R IQEH +FL+LINEPV+G +G+
Sbjct: 51 LMNNQQFQALRSMVQANPQILRPMLQELGKQNPQLLRSIQEHDQEFLQLINEPVDGSDGD 110
Query: 335 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
+ +P V+VTPEE+E IERLEAMGFDRALV+E F AC++NEELAANYLL+ +
Sbjct: 111 MFDLADQEIPHTVSVTPEEQEVIERLEAMGFDRALVIEAFLACDRNEELAANYLLEQAGD 170
Query: 395 FE 396
+E
Sbjct: 171 YE 172
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 198/393 (50%), Gaps = 80/393 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
E K+ E +FV V+ +VG NQ
Sbjct: 61 EYKIDERNFV------VVMVSKVG---------------------AGNQ----------T 83
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYG--QAASNLVAGSNLEATVQQILDMG 178
HR +S L S SD A+S LV G+ EA + +I+ MG
Sbjct: 84 HRPTVSSRPLAFC---------------SSSDGSQGLDASSALVTGAEYEAMLTEIISMG 128
Query: 179 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 238
++RE V+ ALRA++NNP RAVEYL +GIP PV ++ QA A +
Sbjct: 129 ---YERERVVAALRASFNNPHRAVEYLLTGIPSS----PVQESNPPAQAP---APLPTES 178
Query: 239 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPM 298
PA+PA P A P G L FLRN QF +R +Q NP +L +
Sbjct: 179 PASPAEGCFP-ACP---------------GENPLAFLRNQPQFLHMRQAIQQNPNLLSAL 222
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 358
LQ+LG++NP L++ I +HQ F++++NEPV G + + VTP+E+EAIE
Sbjct: 223 LQQLGQENPQLLQQINQHQERFIQMLNEPVGEGGELGAAGEEGSSVNYIQVTPQEKEAIE 282
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
R +A+GF ALV++ +FAC KNE LAAN+LL+
Sbjct: 283 RFKALGFPEALVIQAYFACEKNENLAANFLLNQ 315
>gi|217070100|gb|ACJ83410.1| unknown [Medicago truncatula]
gi|388522857|gb|AFK49490.1| unknown [Medicago truncatula]
Length = 142
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 117/143 (81%), Gaps = 1/143 (0%)
Query: 255 LFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 314
+FPQ + G+ AGAG+LDFLRN+ QFQALRTMVQ+NPQILQP+LQELGKQNP L+RLI
Sbjct: 1 MFPQETIS-GAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLID 59
Query: 315 EHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 374
EH ++FL+LINEP++G EG+ Q MP AV VTP E+EAI RLEAMGFDRA V+E F
Sbjct: 60 EHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAF 119
Query: 375 FACNKNEELAANYLLDHMHEFED 397
AC+++E+LAANYLL++ +FED
Sbjct: 120 LACDRDEQLAANYLLENAGDFED 142
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 127/207 (61%), Gaps = 11/207 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
EN+V EN+F+V+ML + P +Q P Q + P
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSSAAPAKVTANQA--PSTQTVPATPPQTSAA--------- 109
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + + + + +D YGQA SNLVAGSNLE T++ IL+MGGG
Sbjct: 110 PDAPAPIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGG 169
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYS 207
+WDR+TV+RALRAAYNNPERAVEYLYS
Sbjct: 170 TWDRDTVLRALRAAYNNPERAVEYLYS 196
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 150/244 (61%), Gaps = 20/244 (8%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
+ + +V G LEATV I+ MG ++RE V++ALRAA+NNP+RAVEYL +GIPEQ P
Sbjct: 5 SGAGMVMGPELEATVANIMTMG---FEREQVLKALRAAFNNPDRAVEYLLTGIPEQAEAP 61
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGA-GTLDF 274
A + PA A Q ++ L+LFP+G+P+M G AG G LDF
Sbjct: 62 RPAAQAQ-------PAAAAAPQAPQADVSAALGGGALNLFPEGIPDMSGDGAGDDGMLDF 114
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
LR + QFQA+R MVQ NPQILQPML EL +QNP L LI +Q +FL L+NEP+ +
Sbjct: 115 LRENPQFQAIRAMVQGNPQILQPMLAELQRQNPQLYHLINANQEEFLALLNEPLPENIQD 174
Query: 335 VLGQLASAMPQ--------AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
++ +P+ + +T EERE ++RL +GF + +E F AC+KNE+LAAN
Sbjct: 175 LMSDFGEGVPELEGQGEGMQIELTQEERETVDRLAGLGFPVEICIEAFLACDKNEQLAAN 234
Query: 387 YLLD 390
YLL+
Sbjct: 235 YLLN 238
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 132/223 (59%), Gaps = 25/223 (11%)
Query: 138 LLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 197
+LL L+ ++ ++ YG ASN V GSNLE T+QQI+DMGGGSWDR+TV ALRAA NN
Sbjct: 53 MLLGFLINFVNVTTNTYGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNN 112
Query: 198 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLF 256
PE V+YLYSGIPE + S G P QT A G N++PL++F
Sbjct: 113 PEHVVDYLYSGIPEVVEI----FMSIGPY---PINQTTKIGGATARAVFGVHNSSPLNMF 165
Query: 257 PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 316
P+ + G AG G LDF RN+ LQP+L ELGKQN L+RLI EH
Sbjct: 166 PKEII-CGVGAGIGLLDFHRNN----------------LQPVLXELGKQNLSLLRLISEH 208
Query: 317 QTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 359
+FL L NEPVEG EG++ Q MP ++ VTP E+ AI+R
Sbjct: 209 HVEFLXLTNEPVEGSEGDIFDQPEQDMPHSINVTPAEQHAIKR 251
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 149/241 (61%), Gaps = 10/241 (4%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 217
+++L+ G+ LE+T+ I++MG +DRE V+RA+RAA+NNP+RAVEYL +GIP P
Sbjct: 141 SNSLLMGTQLESTIAGIVEMG---FDREEVVRAMRAAFNNPDRAVEYLMTGIPNNVEAPA 197
Query: 218 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LDFL 275
A ++ A P SGPNA PLD+F P AG LDFL
Sbjct: 198 PAPGASPAAGAVSAAPAAGTPATGGGPASGPNAQPLDMFAPQAPAGAGGAGGAAGPLDFL 257
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP--VEGGEG 333
R++ QF ALR +VQ+NP ILQPMLQELGKQNP L+ LI +Q +FLR+INEP V
Sbjct: 258 RSNPQFIALRQIVQSNPMILQPMLQELGKQNPELLTLINANQQEFLRIINEPPSVIMFWL 317
Query: 334 NVLGQLASAMPQ---AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
V L +A+P AV +T EE+ AI+RLE +GFDR +E F C ++E LAAN+L D
Sbjct: 318 TVRLLLFAALPPGAVAVHLTEEEQAAIQRLETLGFDRNRCIEAFLLCERDETLAANFLFD 377
Query: 391 H 391
Sbjct: 378 S 378
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+KV KT++G FE+E+ DK+ +VK+ IE VQG+D +PA+ Q++I+QGKVLKD TTLE
Sbjct: 4 VKVTFKTVQGNKFELELDSSDKIENVKQKIEGVQGAD-FPAANQVIIYQGKVLKDDTTLE 62
Query: 61 ENKVAENSFVVVMLTK 76
ENK+ +FVVVM+ +
Sbjct: 63 ENKITHENFVVVMIQR 78
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 190/392 (48%), Gaps = 46/392 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+ KV E+ FVVVM V + + + Q P + + +
Sbjct: 60 DYKVTESGFVVVM--SVSKPSKDTTKEASASVQSNPTGETKPTTDKKSPVTEANEAPSSK 117
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
N NL + S + G S+LV G N E V++++ MG
Sbjct: 118 PDANSQSNLPTVTTAP-----------SSATSTLGFGESSLVTGENFERVVKELMSMG-- 164
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
++R VI+A+RA +NNP+RA EYL SG IP V ++++ P
Sbjct: 165 -FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREESESVSP 213
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
P T P G ++GS L L QFQ +R +VQANP++L ++
Sbjct: 214 EGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPELLPQLI 260
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 359
Q++G N L RLIQE++ FL IN PV G + S +T+T EER A++R
Sbjct: 261 QQIGNDNADLFRLIQENEQAFLEFINTPVTG-----TTRPGSQRQTVLTMTAEERAAVDR 315
Query: 360 LEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
L+A+GF LV++ ++AC KNE+ AAN+LL
Sbjct: 316 LKALGFPEELVIQAYYACEKNEDAAANFLLSE 347
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 122/178 (68%), Gaps = 11/178 (6%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAV 215
AS+L++GSNL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YLYSGIP + AV
Sbjct: 105 ASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEVAV 164
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
P V Q N T A P + PN PL LFPQ N G AG G+LDFL
Sbjct: 165 PVVP------QGAN---STDATPPGVTGLSGIPNTAPLSLFPQWASNAGGAAGGGSLDFL 215
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 333
RN+QQFQALR MV NPQILQPMLQELG+ +P L+RLIQE+ +F L NE + G+G
Sbjct: 216 RNNQQFQALREMVHTNPQILQPMLQELGRVDPQLLRLIQENSDEFFGLPNENFDAGDG 273
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 192/392 (48%), Gaps = 59/392 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+ KV E+ FVVVM V + + + Q P + P +++ + ++
Sbjct: 60 DYKVTESGFVVVM--SVSKPSKDTTKEASASVQSNPTGETK---PTTDKKSPVTEANEAP 114
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ S + G S+LV G N E V++++ MG
Sbjct: 115 S---------------------ITTAPSSATSTLGFGESSLVTGENFERVVKELMSMG-- 151
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
++R VI+A+RA +NNP+RA EYL SG IP V ++++ P
Sbjct: 152 -FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREESESVSP 200
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
P T P G ++GS L L QFQ +R +VQANP++L ++
Sbjct: 201 EGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPELLPQLI 247
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 359
Q++G N L RLIQE++ FL IN PV G + S +T+T EER A++R
Sbjct: 248 QQIGNDNADLFRLIQENEQAFLEFINTPVTG-----TTRPGSQRQTVLTMTAEERAAVDR 302
Query: 360 LEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
L+A+GF LV++ ++AC KNE+ AAN+LL
Sbjct: 303 LKALGFPEELVIQAYYACEKNEDAAANFLLSE 334
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 195/417 (46%), Gaps = 70/417 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
E + E FVVVM++K + + K Q + + Q+
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPTSTPAPAPVQTSVPAQVT 117
Query: 121 HRHNL-SLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASN-----LVAGSNLEATVQQI 174
++ + + + + Q + + V A SN L+ G A V I
Sbjct: 118 EAASVQAPSSVPVPTTAPTRTPETATQQPTPTSV---ATSNPPESALLMGEEYNAMVNNI 174
Query: 175 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 234
+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q +PP +
Sbjct: 175 MDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQL-------------FEDPPEEA 218
Query: 235 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 294
Q A PA +AG L FLR QFQ +R ++Q NPQ+
Sbjct: 219 AESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVIQQNPQL 256
Query: 295 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAMP--------- 344
L P+LQ++G+ NP L++LI ++Q F+R++NEPV G A SA P
Sbjct: 257 LNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVGAASGGSTPASAISATPPVAPGGLGA 316
Query: 345 ----------QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+ ++P+++EAIERL+++GF LV++ +FAC KNE LAAN+LL
Sbjct: 317 GAGAGVPGGPGVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFLLSQ 373
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 113/244 (46%), Positives = 149/244 (61%), Gaps = 30/244 (12%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S LV+G+ LEA V QI+ MG ++RE V+ A+RAA+NNP+RAVEYL +GIPE +
Sbjct: 129 SGLVSGAELEAAVTQIMTMG---FEREQVMNAMRAAFNNPDRAVEYLLTGIPETS----- 180
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGAG-TLDFLR 276
QA A A P A A G N L+LFP+G+P+M G +G G LDFLR
Sbjct: 181 -------QAPPAAAAPAADAPDASAALGG---NALNLFPEGIPDMAGDRSGDGQMLDFLR 230
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-------- 328
++ QFQA+R MVQ P ILQPML EL +QNP L LI +Q +FL L+NEP+
Sbjct: 231 DNPQFQAIRAMVQGQPHILQPMLAELQRQNPQLYHLINNNQEEFLALLNEPLPENIRDLM 290
Query: 329 -EGGEGNVLGQLASAMPQA-VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
EG V +L A + ++ EERE I+RL +GF + +E + AC+KNE+LAAN
Sbjct: 291 AEGFGDGVAPELQGDDDGAQIELSQEERETIDRLAGLGFPLEICVEAYLACDKNEQLAAN 350
Query: 387 YLLD 390
YLL+
Sbjct: 351 YLLN 354
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F++E+ V+ VK + QG Y +L+H+G VLKD T+
Sbjct: 1 MKVQFKTLTNQKFDLELDEGADVATVKAEVRKAQG---YGDEAIVLVHKGSVLKDEATIA 57
Query: 61 ENKVAENSFVVVML 74
V E SFVVVM+
Sbjct: 58 SAGVTEESFVVVMV 71
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 128/391 (32%), Positives = 197/391 (50%), Gaps = 52/391 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRL-HLRLLHQL 119
+ KV ++ F V++ V + + G P P ++++ + +
Sbjct: 60 DYKVTDSGF--VVVMSVSKPAKEG-------SASAPGNPAGEGRPTTDKKIPDVDVTESP 110
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
+ + + L + L G S+LV G N E VQ+++ MG
Sbjct: 111 SSKPDANSQPSLPTVTTTQSTTTNTL---------GFGESSLVTGENFERVVQELVSMG- 160
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQTQAQQ 238
+++ VIRA+RA +NNP+RA EYL SG IP V + P+Q + +
Sbjct: 161 --FEKPLVIRAMRAGFNNPDRAFEYLSSGNIPNIDIV-------------DQPSQREGSE 205
Query: 239 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPM 298
+P P D G + GS L L QFQ +R +VQANP++L +
Sbjct: 206 SVSPEA-------PGDADTPGSESAGSEDPIAALASL---PQFQQMRALVQANPELLPQL 255
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 358
+Q++G N L RLIQE++ FL +N PV G + A +T+T EER A++
Sbjct: 256 IQQIGNDNADLFRLIQENEQAFLEFLNTPVTG-----TTRPAGQRQTILTMTAEERAAVD 310
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLL 389
RL+A+GF LV++ ++AC KNE+ AAN+LL
Sbjct: 311 RLKALGFPEELVIQAYYACEKNEDAAANFLL 341
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 136/235 (57%), Gaps = 33/235 (14%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
A+S LV G+ EA + +I+ MG ++RE V+ ALRA++NNP RAVEYL +GIP
Sbjct: 161 ASSALVTGAEYEAMLTEIISMG---YERERVVAALRASFNNPHRAVEYLLTGIP------ 211
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S+ Q NPP Q AP PT P + P G L FLR
Sbjct: 212 -----SSPVQESNPPVQA-----PAPLPTESPASPP--------------EGENPLAFLR 247
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
N QF +R +Q NP +L +LQ+LG++NP L++ I +HQ F++++NEPV G
Sbjct: 248 NQPQFLHMRQAIQQNPNLLSALLQQLGQENPQLLQQINQHQERFIQMLNEPVGEGGEMGA 307
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+ + VTP+E+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+
Sbjct: 308 AGDEGSSVNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQ 362
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKV 77
+ K+ E +FVVVM++K
Sbjct: 61 DYKIDEKNFVVVMVSKA 77
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 146/251 (58%), Gaps = 37/251 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S ++ A S LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP
Sbjct: 161 SSLFDVATSALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP 217
Query: 211 EQTAVPPVARASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
+ A R+S Q A T + QPAAPAPTS N
Sbjct: 218 GERA-----RSSVNNPQQTTGTACTGSAQPAAPAPTSRENP------------------- 253
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
L+FLRN QF +R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++
Sbjct: 254 --LEFLRNQPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQ 311
Query: 330 GGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
V + SA Q + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN
Sbjct: 312 DIANEVA--VTSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAAN 369
Query: 387 YLLDHMHEFED 397
+LL F+D
Sbjct: 370 FLL--QQNFDD 378
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E FVVVM+TK
Sbjct: 61 EYKIDEEKFVVVMITK 76
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 135/417 (32%), Positives = 205/417 (49%), Gaps = 77/417 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+ ++ E +F VV++ + Q + P P + L +
Sbjct: 63 DYRIDEKNF-VVVMVTKAKAGQ---------STLAPPEVSPTAAPEPSTPFQLSPASGMS 112
Query: 121 H-----RHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQIL 175
H R + S + +L + S AAS LV GS E + +I+
Sbjct: 113 HPPPATREDKSPSQESATTTSPESVLGSVPSSGSSGR-EEDAASTLVTGSEYETMLMEIM 171
Query: 176 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-- 233
MG ++RE VI ALRA+YNNP RAVEYL +GIP GNP +
Sbjct: 172 SMG---YERERVIAALRASYNNPHRAVEYLLTGIP-----------------GNPEPEHG 211
Query: 234 -----TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 288
++QPA A AG L+FLR+ QFQ +R ++
Sbjct: 212 SIQESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVI 248
Query: 289 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASA 342
Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 249 QQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGED 307
Query: 343 MPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 308 APQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 149/252 (59%), Gaps = 20/252 (7%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
++++ +A S LV G + E V +I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP
Sbjct: 145 ANIFEEATSALVTGQSYENMVTEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIP 201
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPT-SGPNANPLDLFPQGLPNMGSNAGA 269
+ V A +G+ PA +APAP S ++P P S +GA
Sbjct: 202 AEGEGSVVGAVDAVSPSGSTPA-------SAPAPAISTGLSSPSSTAPA---QPSSASGA 251
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
L+FLRN QF +R ++Q NP +L +LQ++G++NP L++ I HQ F++++NEPV+
Sbjct: 252 NPLEFLRNQPQFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPVQ 311
Query: 330 GGEGNVLGQLASAMPQA----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
+ + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAA
Sbjct: 312 EAGQGGGAGGVAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 371
Query: 386 NYLLDHMHEFED 397
N+LL F+D
Sbjct: 372 NFLL--QQNFDD 381
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 142/252 (56%), Gaps = 34/252 (13%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 165 SRSNLFEDAISALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 221
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
IP QA P Q P T ++ + +P S+ G
Sbjct: 222 IP------------GDNQAVADPPQ--------PPSTGASQSSAVAAAVATIPTTTSSLG 261
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+ ++NEPV
Sbjct: 262 GHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPV 321
Query: 329 -----------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
+G +G +A + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 322 LESRQGLSGSDDGASTGGIGDAGNAHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 381
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 382 EKNENLAANFLL 393
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/134 (64%), Positives = 100/134 (74%), Gaps = 11/134 (8%)
Query: 154 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 213
Y QAASNLV+G+NLE T+QQILDMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE
Sbjct: 147 YSQAASNLVSGNNLEQTIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENV 206
Query: 214 AVPPVARASAGGQAGN----PPAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN-- 266
PVARA A GQ N PAQ P P+P S GPNANPL+LFPQG+P+ GSN
Sbjct: 207 EAQPVARAPAAGQQTNQQAASPAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPG 266
Query: 267 ----AGAGTLDFLR 276
AG+G LD LR
Sbjct: 267 VVPGAGSGALDALR 280
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 61/77 (79%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKV 77
N VAENSF+V+ML+K
Sbjct: 61 SNGVAENSFLVIMLSKA 77
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 143/245 (58%), Gaps = 15/245 (6%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S+LV G+ L+ T+ ++ MG ++R+ +RALRAA+NNP+RAVEYL +GIPE P
Sbjct: 129 SSLVTGAALQETINNMMSMG---FERDACVRALRAAFNNPDRAVEYLLTGIPENLMPPAA 185
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDF 274
A A A A GPN PL+LFP+G G G G LDF
Sbjct: 186 PAAPAAAAPAAAAPAAAAAAAATAPGGPGPNTQPLNLFPEGGVPGGGGGGGGEGSGILDF 245
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-EGGEG 333
LR + QFQA+R MVQ NPQILQPML EL +QNP L +LI +Q +FLRL+NEP EG
Sbjct: 246 LRENPQFQAIRAMVQGNPQILQPMLAELQRQNPQLYQLIAGNQEEFLRLLNEPAPEGALE 305
Query: 334 NVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
N+ L + ++ +E+ AI+RL A+GF+ E FFAC KNEELAAN
Sbjct: 306 NLAAGLGDGGGFGGDDGEGQIEISEDEKAAIDRLAALGFEFERAAEAFFACGKNEELAAN 365
Query: 387 YLLDH 391
+L D+
Sbjct: 366 FLFDN 370
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL FE + + + DV+ + Q PA + +LIH+GKVL D TL
Sbjct: 1 MKVAFKTLTNQKFEEDFADDASIGDVRAKLSETQK---IPAPEMVLIHKGKVLTDDATLA 57
Query: 61 ENKVAENSFVVVM 73
V E SF+V+M
Sbjct: 58 AAGVTEASFIVMM 70
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 140/243 (57%), Gaps = 46/243 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL GIP
Sbjct: 157 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLMGIP------ 207
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S ++G P Q ++Q P PAP G N L+FLR
Sbjct: 208 ----GSPEPESG--PVQ-ESQAPEQPAPEGGENP---------------------LEFLR 239
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 240 DQPQFQNMRQVIQQNPSLLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPTGELADMSD 299
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 300 VEGEV-GAIGEESPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 358
Query: 389 LDH 391
L
Sbjct: 359 LSQ 361
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P + V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 VTLKTLQQQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKV 77
K+ E +FVVVM+TK
Sbjct: 65 KIDEKNFVVVMVTKA 79
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 143/254 (56%), Gaps = 38/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 143 SRSNLFEDAISALVTGQSYENMVTEIISMG---YEREQVIAALRASFNNPDRAVEYLLMG 199
Query: 209 IP--EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
IP Q P AS G + A + A +P S+
Sbjct: 200 IPGDNQAVAEPSQAASTGASQSSTVATSVAT----------------------IPMTTSS 237
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+ ++NE
Sbjct: 238 LGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNE 297
Query: 327 PV----EGGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFF 375
P +G G+ G + +A + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 298 PAVESRQGLSGSDDGASIGGVAEAGNGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 357
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 358 ACEKNENLAANFLL 371
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 1 VKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 54
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 142/254 (55%), Gaps = 38/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 168 SRSNLFEDAISALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 224
Query: 209 IP--EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
IP Q P AS G +Q+ AA T +P ++
Sbjct: 225 IPGDNQAVAEPTQAASTG--------TSQSSAVAAAVAT--------------IPTTATS 262
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+ ++NE
Sbjct: 263 LGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNE 322
Query: 327 PVEGGEGNVLGQLASAMPQAVT-----------VTPEEREAIERLEAMGFDRALVLEVFF 375
PV + G SA V VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 323 PVIESRQGLSGSDDSASTGGVAEAGNGHMSYIQVTPQEKEAIERLKALGFPEGLVIQAYF 382
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 383 ACEKNENLAANFLL 396
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 149/245 (60%), Gaps = 25/245 (10%)
Query: 150 VSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 209
+++ +A SNLV GS+ +A V +++ MG ++RE V+ ALRA++NNP+RA+EYL +GI
Sbjct: 142 AANLISEAVSNLVTGSSYDAMVNEMMLMG---YEREQVVAALRASFNNPDRAMEYLLTGI 198
Query: 210 PEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
P + ++G A PPA + PA PA + AN + P+ G G
Sbjct: 199 PSRNQ-----GNASGRDAVAPPA---SGTPAVPAGNASAPANT-----RSSPSAG---GG 242
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV- 328
L FLRN QFQ +R ++Q N +L +LQE+G++NP L++ I HQ F++++NEPV
Sbjct: 243 NPLSFLRNQPQFQVMRQLIQQNAALLPALLQEIGRENPELLQEISSHQEQFIQMLNEPVP 302
Query: 329 ----EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
GG G + M + VTP+E+EAIERL+A+GF LV++ +FAC KNE LA
Sbjct: 303 EPVPGGGSSGAGGGGGNQM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 361
Query: 385 ANYLL 389
AN+LL
Sbjct: 362 ANFLL 366
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 51/76 (67%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G +++ + Q LI+ GK+L D + L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 141/252 (55%), Gaps = 36/252 (14%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S LV GS LE+ V+ ++ MG ++R RALRA++NNP+RAVEYL++GIPE +
Sbjct: 152 SQLVTGSQLESVVENMMSMG---FERAQCERALRASFNNPDRAVEYLFNGIPEHI----L 204
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN----PLDLFPQGLPNMGSNAGAG---- 270
+A Q Q + QQ + PNAN ++LF +
Sbjct: 205 NEMNAAQQ------QPEVQQDTNTQSPTTPNANDANASMNLFAAAQQHAQQQQQQQQQEQ 258
Query: 271 ------TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+L RN+ FQ +R +VQ NP +LQP+LQ +G+ NP L+R I FL+
Sbjct: 259 NQNLNASLANFRNTPHFQQIRQLVQTNPALLQPLLQSIGQSNPELIRAINADPNAFLQAF 318
Query: 325 NEPVEGGEGNVLGQLASAMPQAVT--VTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
E EG EG +G P+ T VTPEER+AI+RL A+GFD+A+ E +FAC+KNEE
Sbjct: 319 LEGAEGEEG-AMG------PETTTIQVTPEERDAIDRLAALGFDKAVAAEAYFACDKNEE 371
Query: 383 LAANYLLDHMHE 394
LAANYL +H ++
Sbjct: 372 LAANYLFEHGYD 383
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ VKTL+ F+++V D + VK+ I+ QG V +QQ LI GK+L D +E
Sbjct: 4 LQITVKTLQQKQFKLDVDSSDTILSVKEKIQESQGHAV---AQQKLIFSGKILVDDKKVE 60
Query: 61 ENKVAENSFVVVMLTK 76
+ + E F+VVM+ K
Sbjct: 61 DYNITEKDFLVVMVAK 76
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 141/250 (56%), Gaps = 29/250 (11%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
IP G+ +Q P A + + P++ +N G
Sbjct: 229 IP-----------------GDRDSQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTANPG 271
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 272 GHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
Query: 329 EGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 332 QEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 391
Query: 380 NEELAANYLL 389
NE LAAN+LL
Sbjct: 392 NENLAANFLL 401
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 142/259 (54%), Gaps = 30/259 (11%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
S ++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 174 SSRPSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 230
Query: 208 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
GIP + + GQA P + + P P P + A +
Sbjct: 231 GIP----------SDSEGQAVAEPPEALSSTPTEPLPVAAGAAA------TTTVPSTPST 274
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G LDFL+N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++N+P
Sbjct: 275 GGNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDP 334
Query: 328 VEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 378
V V + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 335 VPESGGQGGGGGGGRGVAAEAGSGQMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 394
Query: 379 KNEELAANYLLDHMHEFED 397
KNE LAAN+LL F+D
Sbjct: 395 KNENLAANFLL--QQNFDD 411
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G+D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 146/241 (60%), Gaps = 40/241 (16%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
A+S LV G+ EA + +I+ MG ++RE V+ ALRA++NNP RAVEYL +GIP
Sbjct: 154 ASSTLVTGAEYEAMLTEIMSMG---YERERVVAALRASFNNPHRAVEYLLTGIP------ 204
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S+ Q NPPAQ APTSG P +P G L FLR
Sbjct: 205 -----SSPVQESNPPAQ---------APTSGTTEAP------SVPE-----GENPLAFLR 239
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-EGGEGNV 335
QF +R +Q NP +L +LQ+LG++NP L++ I +HQ F++++NEPV EGG+
Sbjct: 240 TQPQFLHMRQAIQQNPALLPALLQQLGRENPQLLQQISQHQELFIQMLNEPVGEGGDAPE 299
Query: 336 LGQLASAMPQA-----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
+G++ +A + + VTP+E+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+
Sbjct: 300 VGEMGAAGEEGAPVNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLN 359
Query: 391 H 391
Sbjct: 360 Q 360
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVML 74
+ K+ E +FVVVM+
Sbjct: 61 DYKIDEKNFVVVMV 74
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 151/258 (58%), Gaps = 30/258 (11%)
Query: 154 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 213
Y +AS L+ G +LEATV QI++MG ++RE V++ALRAA+NNP+RAVEYL T
Sbjct: 135 YDASASALLTGESLEATVMQIMEMG---FEREQVMKALRAAFNNPDRAVEYLM------T 185
Query: 214 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 273
+P A +A Q G A + S L Q + S G LD
Sbjct: 186 GIPEGADTAAPPQGGGQGGGQGAGGSGSGGGVSIDPEVLSSLQSQMQQHSESGGTGGPLD 245
Query: 274 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 333
FLR+ QF LR ++QA PQ LQP+L+++G+Q+P ++R IQE+Q +F+RLINEPV+
Sbjct: 246 FLRSDPQFAMLRGIIQARPQFLQPLLEQIGQQHPEVLRAIQENQDEFVRLINEPVD---- 301
Query: 334 NVLGQLASAMPQA-------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 380
Q + AM QA + +T EE EA+ RLEA+GF+R L LE + AC+KN
Sbjct: 302 --QTQFSQAM-QALEGRGEDEEGAVQIQLTQEEGEALARLEALGFNRQLALEAYLACDKN 358
Query: 381 EELAANYLLDH-MHEFED 397
EE+AANYL ++ M E D
Sbjct: 359 EEMAANYLFENGMDEGGD 376
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKT+ G E+E +P + ++D+K IE S P ++ +IH G+VL+D +
Sbjct: 1 MKVIVKTMAGLQTEMEFEPTNTLADLKTKIEGQMSSLGGPVNK--IIHMGRVLEDGKPIS 58
Query: 61 ENKVAENSFVVVMLTK 76
E VA+ + V+M++K
Sbjct: 59 EYGVADGNTFVIMVSK 74
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 141/250 (56%), Gaps = 29/250 (11%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 150 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 206
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
IP G+ +Q P A + + P++ +N G
Sbjct: 207 IP-----------------GDRDSQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTANPG 249
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 250 GHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 309
Query: 329 EGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 310 QEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 369
Query: 380 NEELAANYLL 389
NE LAAN+LL
Sbjct: 370 NENLAANFLL 379
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 54
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 142/248 (57%), Gaps = 44/248 (17%)
Query: 154 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 213
+GQA S L+ G +++ I+DMG + +E V RALRA++NNP+RAVEYL +GIP +
Sbjct: 123 FGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERALRASFNNPDRAVEYLLNGIP--S 177
Query: 214 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 273
V + GG+ NPL P+ N L
Sbjct: 178 DVDDTESSDVGGEENT--------------------LNPL------TPDTCGNE-EDPLA 210
Query: 274 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--- 330
FLR+ QFQ +R ++QANPQ+L +LQ++G+ NP L+++I ++Q F+R++NEP G
Sbjct: 211 FLRSQPQFQQMRQVIQANPQLLNAVLQQIGQTNPALLQIISQNQDAFVRMLNEPGTGSGA 270
Query: 331 -------GEGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
G V G AS + P + VTP+++EAIERL+A+GF LVLE +FAC+KNE
Sbjct: 271 TPAPPAAGGNPVSGGAASNVFPPSVIQVTPQDKEAIERLKALGFPEHLVLEAYFACDKNE 330
Query: 382 ELAANYLL 389
LAAN+LL
Sbjct: 331 NLAANFLL 338
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I++ V +K+ IE +G D YPA Q LI+ GK+L D T L
Sbjct: 1 MIITLKNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLS 59
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E F+VVM+TK
Sbjct: 60 EYKIDEKKFIVVMVTK 75
>gi|4966345|gb|AAD34676.1|AC006341_4 Similar to gb|Y12014 RAD23 protein isoform II from Daucus carota.
This gene is probably cut off. EST gb|AA651284 comes
from this gene [Arabidopsis thaliana]
Length = 113
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 94/113 (83%), Gaps = 2/113 (1%)
Query: 287 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMP 344
MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP
Sbjct: 1 MVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMP 60
Query: 345 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 61 HSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 113
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 148/252 (58%), Gaps = 22/252 (8%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
++++ +A S L G + E V +I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP
Sbjct: 145 ANIFEEATSAL--GQSYENMVTEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIP 199
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPT-SGPNANPLDLFPQGLPNMGSNAGA 269
+ V A +G+ PA +APAP S ++P P S +GA
Sbjct: 200 AEGEGSVVGAVDAVSPSGSTPA-------SAPAPAISTGLSSPSSTAPA---QPSSASGA 249
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
L+FLRN QF +R ++Q NP +L +LQ++G++NP L++ I HQ F++++NEPV+
Sbjct: 250 NPLEFLRNQPQFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPVQ 309
Query: 330 GGEGNVLGQLASAMPQA----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
+ + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAA
Sbjct: 310 EAGQGGGAGGVAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 369
Query: 386 NYLLDHMHEFED 397
N+LL F+D
Sbjct: 370 NFLL--QQNFDD 379
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 140/252 (55%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 205 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 261
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G AP S A ++
Sbjct: 262 GDRESQAVVDPPPAASTG------------------APQSSVAAAAATT---TATTTTTS 300
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 301 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 360
Query: 327 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 361 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 420
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 421 EKNENLAANFLL 432
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 31/107 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-------------------------------VSDVKKN 29
M+V +KTL+ F+I++ PE+ V +K+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETHVQQKFSTLSEAPTLCPAPLFGLGTPTNSIIVKALKEK 60
Query: 30 IETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 61 IESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 107
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 139/252 (55%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 153 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 209
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G + A +SG G P
Sbjct: 210 GDRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----- 253
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 254 -----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 308
Query: 327 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 309 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 368
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 369 EKNENLAANFLL 380
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 55
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 141/252 (55%), Gaps = 35/252 (13%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 178 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 234
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
G+ +Q P P T+GP + + + +G
Sbjct: 235 -----------------GDRESQAVVDPP--PVATTGPPQSSVAAAAATTTATTTTTSSG 275
Query: 271 --TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 276 GHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 335
Query: 329 EGG-----------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 336 QEAGGQGGGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 395
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 396 EKNENLAANFLL 407
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 54
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 189/411 (45%), Gaps = 49/411 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK FEI+ +P + V VK+ I ++G +V Q LI+ GK+LKD T+E
Sbjct: 1 MKLTFKDLKQEKFEIDAEPSETVGQVKERICQLKGWEV---PQLKLIYSGKILKDENTIE 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
++V + F ++ +PK P R
Sbjct: 58 S-------------------YKVEEKGFIVYMVSKPKTSSSSAAPSQGPSTPSRAAASTP 98
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLH-SVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
S S S L+ G E V Q+ MG
Sbjct: 99 AAPPAPAPATSAPAQAAPPATPSPAATGASQSGSAFNDPSALMTGRENENAVAQMESMG- 157
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
+ R+ + RA+RAA+ NP+RAVEYL SGIP+ + A A Q P
Sbjct: 158 --FARDDINRAMRAAFFNPDRAVEYLLSGIPDNIQQEQQQQQQQQQAAAAAAASPTPQAP 215
Query: 240 AAPAP-TSGPNANPLDLFPQ----GLPNMGSNAGAG-----TLDFLRNSQQFQALRTMVQ 289
+ + T+ P++LF G + G +G LDFLR++ FQ LR +VQ
Sbjct: 216 SGESGLTTAGGDEPVNLFEAAAQAGTQDTGRAGRSGGEALPNLDFLRHNPHFQQLRQLVQ 275
Query: 290 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--- 346
NPQ+L+P+LQ+L NP + LI +++ FL+L++E E G A+P
Sbjct: 276 QNPQMLEPILQQLASGNPQIAALIGQNEEQFLQLLSEEDEEG----------ALPPGTHQ 325
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ VT EER+AIERL +GF R V++ +FAC+KNEELAANYL ++ + ED
Sbjct: 326 IHVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANYLFENPDDPED 376
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 139/426 (32%), Positives = 196/426 (46%), Gaps = 78/426 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+ E F+V M++K PK P R
Sbjct: 58 SYNIEEKGFIVCMVSK-------------------PKASSSTATPSQAPSTPSRAATSTP 98
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
SD S L++GS EA + + MG
Sbjct: 99 AAPPAPAPSTNASATAPPATPSPAAATQP-SDAAFNDPSALLSGSQGEAVISHMESMG-- 155
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQ--------------------TAVPPVAR 220
+ R+ + RA+RAA+ NP RA+EYL +GIPE + PP A
Sbjct: 156 -FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQPPAAS 214
Query: 221 ASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAGAG--T 271
A GN PA T ++P AA A T GP+ GS AG G
Sbjct: 215 A-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHGA----------RSGSAAGEGLPN 259
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E
Sbjct: 260 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE----- 314
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
EG+ G L Q + VT EER+AIERL +GF R +V+E +FAC+KNEELAAN+L ++
Sbjct: 315 EGD--GALPPGTHQ-IHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEELAANFLFEN 371
Query: 392 MHEFED 397
+ ED
Sbjct: 372 TDDPED 377
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 140/252 (55%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 102 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 158
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G AP S A ++
Sbjct: 159 GDRESQAVVDPPPTASTG------------------APQSSVAAAAATT---TATTTTAS 197
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 198 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 257
Query: 327 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 258 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 317
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 318 EKNENLAANFLL 329
>gi|413954954|gb|AFW87603.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 104
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
Query: 298 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREA 356
MLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+PQ +TVTPEEREA
Sbjct: 1 MLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREA 60
Query: 357 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
I+RLE MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 61 IQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 101
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 140/252 (55%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 102 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 158
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G AP S A ++
Sbjct: 159 GDRESQAVVDPPPAASTG------------------APQSSVAAAAATT---TATTTTTS 197
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 198 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 257
Query: 327 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 258 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 317
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 318 EKNENLAANFLL 329
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 215/477 (45%), Gaps = 127/477 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKVI---------------RFHQVGPQLFQLHQQIRPKLQVLRLLP 105
K+ E F+VVMLT+ R ++ +LF+ + I
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIE---------- 109
Query: 106 RHNQRLHLRLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQ--------- 156
+ + +S + + + + + +S SD+ G+
Sbjct: 110 --------KTISSTSGSTPISGAVESAPSVSVSSTGTAIQRPYSSSDLVGELANASLQTR 161
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP +
Sbjct: 162 AESNLLMGEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE-- 216
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 274
+ +AG + N Q P AP P S P + LP S+ +F
Sbjct: 217 --SLFNAGDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEF 255
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG---- 330
LR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 256 LRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIEGESAS 315
Query: 331 ---------------------------GEGNVLGQLASAMPQA----------------- 346
EG V Q +SA A
Sbjct: 316 GNNTQRSTPPRIQSFPTRTESLPSSATEEGPVANQRSSAGGIAADQLQRPDVADREVTEQ 375
Query: 347 ------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ + ++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 376 SAGIATIRLNAQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 430
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 215/477 (45%), Gaps = 127/477 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKVI---------------RFHQVGPQLFQLHQQIRPKLQVLRLLP 105
K+ E F+VVMLT+ R ++ +LF+ + I
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIE---------- 109
Query: 106 RHNQRLHLRLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQ--------- 156
+ + +S + + + + + +S SD+ G+
Sbjct: 110 --------KTISSTSGSTPISGAVESAPSVSVSSTGTAIQRPYSSSDLVGELANASLQTR 161
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP +
Sbjct: 162 AESNLLMGEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE-- 216
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 274
+ +AG + N Q P AP P S P + LP S+ +F
Sbjct: 217 --SLFNAGDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEF 255
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG---- 330
LR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 256 LRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIEGESAS 315
Query: 331 ---------------------------GEGNVLGQLASAMPQA----------------- 346
EG V Q +SA A
Sbjct: 316 GNNTQRSTPPRIQSFPTRTESLPSSATEEGPVANQRSSAGGIAADQLQRRDVADREVTEQ 375
Query: 347 ------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ + ++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 376 SAGIATIRLNAQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 430
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 143/261 (54%), Gaps = 43/261 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 229 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPV-EGGE---------------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 368
NEPV E G G + + S + VTP+E+EAIERL+A+GF
Sbjct: 329 NEPVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEG 388
Query: 369 LVLEVFFACNKNEELAANYLL 389
LV++ +FAC KNE LAAN+LL
Sbjct: 389 LVIQAYFACEKNENLAANFLL 409
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 42/260 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 229 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 369
NEPV+ G + + S + VTP+E+EAIERL+A+GF L
Sbjct: 329 NEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGL 388
Query: 370 VLEVFFACNKNEELAANYLL 389
V++ +FAC KNE LAAN+LL
Sbjct: 389 VIQAYFACEKNENLAANFLL 408
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 143/254 (56%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 169 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 225
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S +A
Sbjct: 226 IPGDRESQAVVDPPQAASTG------------------APQS--SAVAAAAATTTAATTT 265
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 266 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 325
Query: 325 NEPV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV GG + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 326 NEPVQEAGSQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 385
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 386 ACEKNENLAANFLL 399
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I+V D V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQIFKIDV---DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 57
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 58 EYKIDEKNFVVVMVTK 73
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 143/256 (55%), Gaps = 36/256 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS--- 265
IP G+ +Q P A A T P ++ + +
Sbjct: 229 IP-----------------GDRESQAVVDPPQA-AGTGTPQSSAVAAAAATTTATTTTTT 270
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++N
Sbjct: 271 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLN 330
Query: 326 EPVEGG------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEV 373
EPV+ + + S + VTP+E+EAIERL+A+GF LV++
Sbjct: 331 EPVQEAGGQGGGGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQA 390
Query: 374 FFACNKNEELAANYLL 389
+FAC KNE LAAN+LL
Sbjct: 391 YFACEKNENLAANFLL 406
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 143/252 (56%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 211 ---EQTAVPPVARASAGGQAGNPPA-QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
E AV PPA T A Q + A + A+ P G P
Sbjct: 231 GDRESQAV-----------VDTPPAVSTGAPQSSVAAAAATTTASTTTASPGGHP----- 274
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 275 -----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 329
Query: 327 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 330 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 389
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 390 EKNENLAANFLL 401
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 142/261 (54%), Gaps = 43/261 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 229 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG----------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 368
NEPV+ G + + S + VTP+E+EAIERL+A+GF
Sbjct: 329 NEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEG 388
Query: 369 LVLEVFFACNKNEELAANYLL 389
LV++ +FAC KNE LAAN+LL
Sbjct: 389 LVIQAYFACEKNENLAANFLL 409
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 209/451 (46%), Gaps = 91/451 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +GS+ Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGSE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
V E F+VVMLT+ + Q+ K + +L + R H +
Sbjct: 60 SYNVDEKKFIVVMLTRDSSYSN--------RNQLSVK-ESDKLTSTDDSR-HSMPCEEAN 109
Query: 121 HRHNLSL----NLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILD 176
H ++ S + +L L L+ +L S + +A SNL+ G TV +++
Sbjct: 110 HSNSPSCRNTDDSVLSRETRPLPSDELIGELAQAS-LQSRAESNLLMGDEYNQTVLSMVE 168
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 236
MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 169 MG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNGLNESTNPSLIPSG 221
Query: 237 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 296
Q A+ T P +++ + +FLR+ QF +R+++ NP +L
Sbjct: 222 PQTASATSTERP----------------ADSNSDPFEFLRSQPQFLQMRSLIYQNPHLLH 265
Query: 297 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------------------- 331
+LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 266 AVLQQIGQTNPALLQLISENQDAFLNMLNQPIERESESVATVPHVSNARTPSTLDNVSLF 325
Query: 332 ----EGNVLGQLASAMPQA---------------------VTVTPEEREAIERLEAMGFD 366
EG Q ++A A + + ++++AIERL+A+GF
Sbjct: 326 SPDLEGATSAQRSTAGTSAAQQIGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFP 385
Query: 367 RALVLEVFFACNKNEELAANYLLDHMHEFED 397
ALVL+ +FAC KNEE AAN+LL F+D
Sbjct: 386 EALVLQAYFACEKNEEQAANFLLS--SSFDD 414
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 143/252 (56%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 153 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 209
Query: 211 ---EQTAVPPVARASAGGQAGNPPA-QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
E AV PPA T A Q + A + A+ P G P
Sbjct: 210 GDRESQAV-----------VDTPPAVSTGAPQSSVAAAAATTTASTTTASPGGHP----- 253
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 254 -----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 308
Query: 327 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 309 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 368
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 369 EKNENLAANFLL 380
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 55
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 141/260 (54%), Gaps = 42/260 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 9 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 65
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P PP P +PA +
Sbjct: 66 IPGDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATTTA--------TTT 105
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 106 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 165
Query: 325 NEPVEGG---------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 369
NEPV+ G + + S + VTP+E+EAIERL+A+GF L
Sbjct: 166 NEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGL 225
Query: 370 VLEVFFACNKNEELAANYLL 389
V++ +FAC KNE LAAN+LL
Sbjct: 226 VIQAYFACEKNENLAANFLL 245
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 138/426 (32%), Positives = 195/426 (45%), Gaps = 78/426 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
V VK LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 26 FNVAVKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 82
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+ E F+V M++ +PK P R
Sbjct: 83 SYNIEEKGFIVCMVS-------------------KPKASSSTATPSQAPSTPSRAATSTP 123
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
SD S L++GS EA + + MG
Sbjct: 124 AAPPAPAPSTNASATAPPATPSPAAATQP-SDAAFNDPSALLSGSQGEAVISHMESMG-- 180
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQ--------------------TAVPPVAR 220
+ R+ + RA+RAA+ NP RA+EYL +GIPE + PP A
Sbjct: 181 -FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQPPAAS 239
Query: 221 ASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAGAG--T 271
A GN PA T ++P AA A T GP+ GS AG G
Sbjct: 240 A-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHGA----------RSGSAAGEGLPN 284
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E
Sbjct: 285 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE----- 339
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
EG+ G L Q + VT EER+AIERL +GF R +V+E +FAC+KNEELAAN+L ++
Sbjct: 340 EGD--GALPPGTHQ-IHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEELAANFLFEN 396
Query: 392 MHEFED 397
+ ED
Sbjct: 397 TDDPED 402
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 140/252 (55%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G + A +SG G P
Sbjct: 231 GDRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----- 274
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 275 -----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 329
Query: 327 PVEGGEGNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ G G + A + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 330 PVQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 389
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 390 EKNENLAANFLL 401
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIEEKNFVVVMVTK 76
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 42/260 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 100 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 156
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 157 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 196
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 197 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 256
Query: 325 NEPVEGG---------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 369
NEPV+ G + + S + VTP+E+EAIERL+A+GF L
Sbjct: 257 NEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGL 316
Query: 370 VLEVFFACNKNEELAANYLL 389
V++ +FAC KNE LAAN+LL
Sbjct: 317 VIQAYFACEKNENLAANFLL 336
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 151 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 207
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 208 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 247
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 248 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 307
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 308 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 367
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 368 ACEKNENLAANFLL 381
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 55
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 141/252 (55%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G AP S A ++
Sbjct: 231 GDRESQAVVDPPPAASTG------------------APQSSVAAAAATT---TATTTTTS 269
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 270 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 329
Query: 327 PV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 330 PVQEAGSQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 389
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 390 EKNENLAANFLL 401
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 142/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 166 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 222
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S +A
Sbjct: 223 IPGDRESQAVVDPPQAASTG------------------APQS--SAVAAAAATTTATTTT 262
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 263 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 322
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 323 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 382
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 383 ACEKNENLAANFLL 396
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K + G+ EVK +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MSLKKKKVSGSVCRREVK------ALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 54
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 55 EYKIDEKNFVVVMVTK 70
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQLTFWIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 142/261 (54%), Gaps = 43/261 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 100 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 156
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 157 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 196
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 197 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 256
Query: 325 NEPVEGG----------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 368
NEPV+ G + + S + VTP+E+EAIERL+A+GF
Sbjct: 257 NEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEG 316
Query: 369 LVLEVFFACNKNEELAANYLL 389
LV++ +FAC KNE LAAN+LL
Sbjct: 317 LVIQAYFACEKNENLAANFLL 337
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 151 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 207
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 208 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 247
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 248 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 307
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 308 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 367
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 368 ACEKNENLAANFLL 381
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 55
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 151 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 207
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 208 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 247
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 248 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 307
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 308 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 367
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 368 ACEKNENLAANFLL 381
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 55
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 42/260 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 90 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 146
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 147 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 186
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 187 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 246
Query: 325 NEPVEGG---------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 369
NEPV+ G + + S + VTP+E+EAIERL+A+GF L
Sbjct: 247 NEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGL 306
Query: 370 VLEVFFACNKNEELAANYLL 389
V++ +FAC KNE LAAN+LL
Sbjct: 307 VIQAYFACEKNENLAANFLL 326
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 150 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 206
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 207 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 246
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 247 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 306
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 307 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 366
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 367 ACEKNENLAANFLL 380
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 54
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 142/263 (53%), Gaps = 34/263 (12%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
S ++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 174 SSRPSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 230
Query: 208 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
GIP + GQA P QT + P P P + A +
Sbjct: 231 GIP----------SDREGQAVAEPPQTLSSTPTQPLPAAAGAAA------TTTTPSTPST 274
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G LDFL+N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++N+P
Sbjct: 275 GGNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDP 334
Query: 328 VEGG-------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 374
V + + S + VTP+E+EAIERL+A+GF LV++ +
Sbjct: 335 VPESGGQGGGGGGGGGGGRGIAAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAY 394
Query: 375 FACNKNEELAANYLLDHMHEFED 397
FAC KNE LAAN+LL F+D
Sbjct: 395 FACEKNENLAANFLL--QQNFDD 415
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 141/250 (56%), Gaps = 29/250 (11%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 170 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 226
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
IP G+ +Q P A + + P++ ++ G
Sbjct: 227 IP-----------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPG 269
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 270 GHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 329
Query: 329 EGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 330 QEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 389
Query: 380 NEELAANYLL 389
NE LAAN+LL
Sbjct: 390 NENLAANFLL 399
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 151 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 207
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 208 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 247
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 248 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 307
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 308 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 367
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 368 ACEKNENLAANFLL 381
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 55
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 100 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 156
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 157 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 196
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 197 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 256
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 257 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 316
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 317 ACEKNENLAANFLL 330
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 140/252 (55%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 152 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 208
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G + A +SG G P
Sbjct: 209 GDRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----- 252
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 253 -----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 307
Query: 327 PVEGGEGNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ G G + A + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 308 PVQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 367
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 368 EKNENLAANFLL 379
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 1 VRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 54
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 140/252 (55%), Gaps = 36/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 153 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 209
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G AP S A ++
Sbjct: 210 GDRENQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTTTS 249
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 250 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 309
Query: 327 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 310 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 369
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 370 EKNENLAANFLL 381
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 55
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 143/261 (54%), Gaps = 44/261 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 229 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLA-LLQQIGRENPQLLQQISQHQEHFIQML 327
Query: 325 NEPV-EGGE---------------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 368
NEPV E G G + + S + VTP+E+EAIERL+A+GF
Sbjct: 328 NEPVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEG 387
Query: 369 LVLEVFFACNKNEELAANYLL 389
LVL+ +FAC KNE LAAN+LL
Sbjct: 388 LVLQAYFACEKNENLAANFLL 408
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 141/255 (55%), Gaps = 36/255 (14%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 149 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 205
Query: 208 GIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 263
GIP Q V P AS G AP S A
Sbjct: 206 GIPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTT 245
Query: 264 GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 323
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+++
Sbjct: 246 TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 305
Query: 324 INEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 374
+NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +
Sbjct: 306 LNEPVQEAGGQGGGGGGGSGGIAEAGSGPMNYIQVTPQEKEAIERLKALGFPEGLVIQAY 365
Query: 375 FACNKNEELAANYLL 389
FAC KNE LAAN+LL
Sbjct: 366 FACEKNENLAANFLL 380
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 54
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 209/457 (45%), Gaps = 112/457 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE + E V ++KK I V+GS+ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFEAEKTVFELKKKIFDVRGSE-YIVEKQKLIYAGVILVDDHTIS 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQL-HQQIRPKLQVLRLLPRH------------ 107
V E F+VVMLT+ ++ + + Q R L + LP
Sbjct: 60 SYNVDEKKFIVVMLTRDTASSTCQSRIKEADNAQNRLCLNT-QPLPSEITSNSDTFCGST 118
Query: 108 NQRLHLRLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNL 167
NQ + + ++ R++L + +L +VS + +A SNL+ G
Sbjct: 119 NQPIIISATNETKQRNDL------------------VGELENVS-LQSRAESNLLMGDEY 159
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVARASAGGQ 226
TVQ +++MG + RE V RA+ A++NNPERAVEYL +G+P E + V S
Sbjct: 160 TQTVQSLIEMG---YPREQVERAMSASFNNPERAVEYLINGLPAEDENIFHVDEEST--- 213
Query: 227 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 286
NP Q + T + D F +FLR+ QF +R+
Sbjct: 214 --NPSLVQSGPQNISALSTGHSTGSSSDPF----------------EFLRSQPQFLQMRS 255
Query: 287 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 346
++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+E G A A+P+
Sbjct: 256 LIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIENDSG-----AADAVPRT 310
Query: 347 VT----------------------------------------------VTPEEREAIERL 360
T + +E+EAIERL
Sbjct: 311 STNRRRRVFSSELEGAVAAHRLGTNELRENQTGGNDEPFEHPGVATIRLNSQEQEAIERL 370
Query: 361 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+A+GF ALVL+ +FAC KNEELAAN+LL F+D
Sbjct: 371 KALGFPEALVLQAYFACEKNEELAANFLLS--SSFDD 405
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 143/260 (55%), Gaps = 25/260 (9%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
S ++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 174 SSRPSIFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 230
Query: 208 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
GIP + QA P + + P P + P PL + +
Sbjct: 231 GIP----------SDREDQAVAEPPEALSSTPTLTPPLTQPLTQPLPAAAGAAATTTTPS 280
Query: 268 GA----GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 323
LDFL+N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+++
Sbjct: 281 TPSTGGNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQM 340
Query: 324 INEPV------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
+N+PV GG V + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 341 LNDPVPEGGREGGGGRGVAAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 400
Query: 378 NKNEELAANYLLDHMHEFED 397
KNE LAAN+LL F+D
Sbjct: 401 EKNENLAANFLL--QQNFDD 418
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 139/256 (54%), Gaps = 38/256 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 229 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGGEGNVLGQLASAMPQA-----------VTVTPEEREAIERLEAMGFDRALVLEV 373
NEPV+ G + VTP+E+EAIERL+A+GF LV++
Sbjct: 329 NEPVQEAGSQGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQA 388
Query: 374 FFACNKNEELAANYLL 389
+FAC KNE LAAN+LL
Sbjct: 389 YFACEKNENLAANFLL 404
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 141/243 (58%), Gaps = 37/243 (15%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 217
AS L+ G+ LE T+ I++MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 125 ASALLTGTELEETITNIVNMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IP- 176
Query: 218 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP---NMGSNAGAGTLDF 274
+ P AP PT+ N GL + S G L+
Sbjct: 177 -------------------ENPVAPNPTNITPVNSNASLNAGLTPSEELSSEQLPGNLES 217
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
LR + FQ LR++VQ +P+IL +L +G+ NP +++LI E+Q +F+R++ E + +
Sbjct: 218 LRTNPLFQQLRSVVQQDPRILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSD 273
Query: 335 VLGQLASAMPQAVTV--TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
+G+ S P T+ TP+E E++ERL+A+GF R V+E + C KNEELAANYLL++
Sbjct: 274 EVGE-TSQFPMQTTIQLTPQEAESVERLQALGFPRNAVIEAYLICEKNEELAANYLLENS 332
Query: 393 HEF 395
+F
Sbjct: 333 ADF 335
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTK 76
+ + E +VV+L+K
Sbjct: 59 DVGIKEGERLVVLLSK 74
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 141/250 (56%), Gaps = 29/250 (11%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 149 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 205
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
IP G+ +Q P A + + P++ ++ G
Sbjct: 206 IP-----------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPG 248
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 249 GHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 308
Query: 329 EGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 309 QEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 368
Query: 380 NEELAANYLL 389
NE LAAN+LL
Sbjct: 369 NENLAANFLL 378
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 55
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 139/254 (54%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G +A
Sbjct: 229 IPGDRESQAVVDPPQAASTG--------------------VPQSSAVAAAAATTTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 139/254 (54%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G +A
Sbjct: 229 IPGDRESQAVVDPPQAASTG--------------------VPQSSAVAAAAATTTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 142/253 (56%), Gaps = 39/253 (15%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN-PLDLFPQGLPNMGS 265
Q V P PPA T T P ++ +
Sbjct: 231 GDRESQAVVDP------------PPAAT----------TGAPQSSVAAAAATTTATTTTT 268
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++N
Sbjct: 269 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLN 328
Query: 326 EPV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
EPV GG + + S + VTP+E+EAIERL+A+GF LV++ +FA
Sbjct: 329 EPVQEAGGQGGGSGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFA 388
Query: 377 CNKNEELAANYLL 389
C KNE LAAN+LL
Sbjct: 389 CEKNENLAANFLL 401
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|167999117|ref|XP_001752264.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696659|gb|EDQ82997.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 92/113 (81%), Gaps = 2/113 (1%)
Query: 287 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG--NVLGQLASAMP 344
MVQANPQILQPMLQELGKQNP L+RLI E+Q +FLRLINE G + LGQLA P
Sbjct: 1 MVQANPQILQPMLQELGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDALGQLAGGYP 60
Query: 345 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
Q+V VTPEEREAIERLE MGF RALV+E F AC+KNE+LAANYLL++ +E++D
Sbjct: 61 QSVNVTPEEREAIERLEGMGFSRALVIEAFLACDKNEQLAANYLLENANEYDD 113
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 100 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 156
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 157 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 196
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 197 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 256
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 257 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 316
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 317 ACEKNENLAANFLL 330
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 184/406 (45%), Gaps = 99/406 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVG-------PQLFQLHQQIRPKLQVLRLLPRHNQRLHL 113
E + + FVV+M + R VG PQ L QI QV + P
Sbjct: 61 EVMIDPSKFVVIM---IARKKPVGATPAESTPQPSNL--QIPAAAQVTTVTP-------- 107
Query: 114 RLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVA-GSNLEATVQ 172
SV+D A N E T Q
Sbjct: 108 ----------------------------------ASVTDNSPAAPQNSDGLTPEQEETAQ 133
Query: 173 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 232
I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG
Sbjct: 134 AIVAMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------ 176
Query: 233 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 292
Q A+ G LDFLR QF+ LR +VQ+NP
Sbjct: 177 QESAEH-----------------------EEGERGQGLGLDFLRQLPQFEQLRELVQSNP 213
Query: 293 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAMPQ---AVT 348
+L ++Q++ + NP LM IQ +Q +F+ L+N G G G+++ SA Q A+
Sbjct: 214 ALLPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVGSGGGGGGRVSPSAGEQRQVAIH 273
Query: 349 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
VT ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 274 VTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 319
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 204/421 (48%), Gaps = 63/421 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V SQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---SQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+ E F+V M++K PK P R +
Sbjct: 58 TYNIEEKGFIVCMVSK-------------------PKATSAAATPSQAPSTPSRAVASTP 98
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSD--VYGQAASNLVAGSNLEATVQQILDMG 178
+ +D V S L++G+ EA V Q+ MG
Sbjct: 99 AAPPAPAPSAATSTPAVPATPSPAAPAQPSADTPVAFNDPSALLSGAQSEAVVAQMESMG 158
Query: 179 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGGQAGNPPAQT 234
+ R + RA+RAA+ NP+RA+EYL +GIPE + + + G A +PPA +
Sbjct: 159 ---FPRSDINRAMRAAFFNPDRAIEYLLNGIPETIHQEQQQQQQQQQAGAGAAASPPAPS 215
Query: 235 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG---------------TLDFLRNSQ 279
+ P+ T G P++LF + G+ GAG L+FLRN+
Sbjct: 216 APSGESVPSSTGG--DEPVNLF-EAAAQAGTGEGAGRGARAGVEGAGEALPNLEFLRNNP 272
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 339
FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E +G
Sbjct: 273 HFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG--------- 323
Query: 340 ASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
A+P A++VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ + +
Sbjct: 324 --ALPPGTHAISVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFENPDDPD 381
Query: 397 D 397
D
Sbjct: 382 D 382
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 46/246 (18%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E V +I+ MG + R+ V+ ALRA++NNP RAVEYL +GIP Q
Sbjct: 159 EQIVSEIVSMG---FPRDQVLLALRASFNNPHRAVEYLTTGIPANVL---------ETQT 206
Query: 228 GNPPAQTQAQQPAAP---------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 278
P TQ++ A P NPL PQG G L FLR+
Sbjct: 207 AETPTATQSESQAEPQTQPQPQEEEDQQQRQQNPLPSSPQG----------GPLGFLRSQ 256
Query: 279 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--- 335
F +R +VQ+NP+ L PMLQ+LG+ NP L+ LI+ HQ++F+ L+NEP+ G+ +
Sbjct: 257 AVFSQMRQIVQSNPEALAPMLQQLGQNNPQLLELIRNHQSEFMELMNEPITEGQPRIAPY 316
Query: 336 ------------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
++VT EE+EAI+RL+A+GFD LV++ +FAC+KNE L
Sbjct: 317 QQQQQQQQPSRQSPGGPGLGSLGISVTQEEKEAIDRLKALGFDEGLVVQAYFACDKNENL 376
Query: 384 AANYLL 389
AAN+LL
Sbjct: 377 AANFLL 382
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE +G D + A LI+ GK+L D T +E+ K+ +FVVVM+ K
Sbjct: 28 VRALKERIEKDRG-DAFLADDLKLIYGGKLLSDDTIIEDVKINPKNFVVVMVAK 80
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 140/252 (55%), Gaps = 39/252 (15%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL-----YSGIPE 211
A S LV G + + V QI++MG +D+ V RALRA++NNP+RAVEYL G E
Sbjct: 165 AESALVMGEDYQRMVSQIMEMG---YDKPQVERALRASFNNPDRAVEYLLTGGNEGGNTE 221
Query: 212 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 271
PP A S G +A PP A P T G +GS
Sbjct: 222 GGGAPPAAAQSPGREAAAPPG-------ALPLSTEG---------------LGSGGAEDP 259
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
L FLR QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEP
Sbjct: 260 LAFLRFQPQFQQMRQVIQQNPQLLNAVLQQIGQSNPQLLQLISQNQEAFVRMLNEPSPPP 319
Query: 332 EGN------VLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
G+ G L S P V VTP+++EAIERL+A+GF LV++ +FAC+KNE
Sbjct: 320 GGSGGRTPPAAGALGSGAPLEVNYGQVTPQDKEAIERLKALGFPEYLVIQAYFACDKNEN 379
Query: 383 LAANYLLDHMHE 394
LAAN+LL ++
Sbjct: 380 LAANFLLSQNYD 391
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F++E+ P D V K+ IE +G + YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQSFKVEIDPSDTVKVFKEKIEVEKGKE-YPAQYQKLIYAGKILNDDSKMS 59
Query: 61 ENKVAENSFVVVMLTK 76
E + E FVV+M+TK
Sbjct: 60 EYDIEEKKFVVIMVTK 75
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 139/261 (53%), Gaps = 43/261 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 229 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGGEGNVLGQLASAMPQA----------------VTVTPEEREAIERLEAMGFDRA 368
NEPV+ G + VTP+E+EAIERL+A+GF
Sbjct: 329 NEPVQEAGSQGEGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEG 388
Query: 369 LVLEVFFACNKNEELAANYLL 389
LV++ +FAC KNE LAAN+LL
Sbjct: 389 LVIQAYFACEKNENLAANFLL 409
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 149/260 (57%), Gaps = 53/260 (20%)
Query: 151 SDVYGQ---AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
+DV G+ A+S LV G +A + I+ MG ++R+ V+ AL+A+YNNP RAVEYL +
Sbjct: 142 TDVVGEGEDASSTLVTGQEYDAMLTNIMSMG---YERDKVVAALKASYNNPHRAVEYLLN 198
Query: 208 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
GIP VP Q NP AQ P PT G N
Sbjct: 199 GIP---TVP--------VQETNP---APAQLPTDTQPTEGENP----------------- 227
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
L+FLR+ QFQ++R ++Q NP +L +LQ+LG++NP L++ I +HQ F++++N P
Sbjct: 228 ----LEFLRSQPQFQSMRQVIQQNPSLLPALLQQLGQENPELLQQISQHQELFIQMLNAP 283
Query: 328 VEGGEGNV--------LGQLAS-AMPQA-VTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
V GEG + LG + A P + + VT +E+EAIERL+A+GF ALV++ +FAC
Sbjct: 284 VGEGEGELGEGGEFADLGAIGDEAAPGSFIQVTQQEKEAIERLKALGFSEALVVQAYFAC 343
Query: 378 NKNEELAANYLLDHMHEFED 397
KNE LAAN+LL+ FED
Sbjct: 344 EKNENLAANFLLN--QNFED 361
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ E V +K+ IE +G D +P + Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKV 77
E K+ E +FVVVM++K
Sbjct: 61 EYKIDEKNFVVVMVSKT 77
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 143/263 (54%), Gaps = 45/263 (17%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 251 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 307
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 308 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 347
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
S+AG L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 348 SSAGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 407
Query: 325 NEPVEGG------------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFD 366
NEPV+ G + + S + VTP+E+EAIERL+A+GF
Sbjct: 408 NEPVQEAGGQGGGGGGGGGGGGGGSGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFP 467
Query: 367 RALVLEVFFACNKNEELAANYLL 389
LV++ +FAC KNE LAAN+LL
Sbjct: 468 EGLVIQAYFACEKNENLAANFLL 490
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 101 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTK 155
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 142/249 (57%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG +DRE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YDRERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 204 ----GSPEPEHGSIQESQASEQPA------------------------TEAGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ++R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP V
Sbjct: 236 DQPQFQSMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADVSD 295
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 296 VEGEV-GAMGEDAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 355 LS--QNFDD 361
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P S Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTK 78
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 143/253 (56%), Gaps = 34/253 (13%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 174 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 230
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q+ V P AS G + A A A T+ +PL+
Sbjct: 231 IPGDRENQSVVDPPQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHPLE---------- 280
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 281 ---------FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 331
Query: 325 NEPV--------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
NEPV GG + + S + VTP+E+EAIERL+A+GF LV++ +FA
Sbjct: 332 NEPVQESGGQGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFA 391
Query: 377 CNKNEELAANYLL 389
C KNE LAAN+LL
Sbjct: 392 CEKNENLAANFLL 404
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 139/254 (54%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 100 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 156
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G +A
Sbjct: 157 IPGDRESQAVVDPPQAASTG--------------------VPQSSAVAAAAATTTATTTT 196
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 197 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 256
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 257 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 316
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 317 ACEKNENLAANFLL 330
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/253 (43%), Positives = 157/253 (62%), Gaps = 8/253 (3%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S + +AAS LV GS+ EA V I++MG + RE V+RALRA++NNP RAVEYL +G
Sbjct: 122 SGGSIESEAASALVTGSDFEAMVSNIMEMG---FPREEVLRALRASFNNPNRAVEYLMTG 178
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN--MGSN 266
IP+ A P + A+ A + A+ + PA P L MG
Sbjct: 179 IPDMPAQAPASPAAERAAAPAAGGEGAAEPGSPPAAGGEGAGEGGISLPSNLLGALMGQQ 238
Query: 267 AGAGT-LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
GAG ++LR QF ++ MVQ NPQ+L P+LQ+LG+ NP ++++I +HQ +F+ L+N
Sbjct: 239 GGAGGHFEWLRQHPQFNQIKAMVQRNPQLLGPLLQQLGQLNPQILQMIGQHQAEFMALLN 298
Query: 326 EPVEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
EP++GG G G A P + + VT EE+EAI+RL+A+GF+R +V+E FFAC+K+E++
Sbjct: 299 EPIQGGAGGAPGGPGGAPPGSNYIQVTQEEKEAIDRLQALGFERHVVIEAFFACDKDEQV 358
Query: 384 AANYLLDHMHEFE 396
ANYL DH HE E
Sbjct: 359 TANYLFDHGHELE 371
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+KV +KT++ FE+EV V DVKK +E ++ +V + Q LI GK+L D +
Sbjct: 2 LKVQIKTIQQQQFEVEVPDTATVLDVKKKVEALRSENV---AWQKLIFAGKILADDAKIN 58
Query: 61 ENKVAENSFVVVMLTK 76
+ F+V+M+ K
Sbjct: 59 TLNIKPTEFLVLMVRK 74
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 143/242 (59%), Gaps = 35/242 (14%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP- 216
AS L+ G+ LE T+ I++MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 146 ASALLTGTELEKTITNIVNMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPE 198
Query: 217 -PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
PVA P T + A + + DL + LP G L+ L
Sbjct: 199 NPVA-----------PNHTNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESL 239
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 335
R + FQ LR++VQ +P+IL +L +G+ NP +++LI E+Q +F+R++ E + +
Sbjct: 240 RTNPLFQQLRSVVQQDPRILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDE 295
Query: 336 LGQLASAMPQAVTV--TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 393
+G+ S P T+ TP+E E++ERL+A+GF R V+E + C KNEELAANYLL++
Sbjct: 296 VGE-TSQFPMQTTIQLTPQEAESVERLQALGFPRNAVIEAYLICEKNEELAANYLLENSA 354
Query: 394 EF 395
+F
Sbjct: 355 DF 356
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 22 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 79
Query: 61 ENKVAENSFVVVMLTK 76
+ + E +VV+L+K
Sbjct: 80 DVGIKEGERLVVLLSK 95
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 142/253 (56%), Gaps = 39/253 (15%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 143 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 199
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN-PLDLFPQGLPNMGS 265
Q V P PPA T T P ++ +
Sbjct: 200 GDRESQAVVDP------------PPAAT----------TGAPQSSVAAAAATTTATTTTT 237
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++N
Sbjct: 238 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLN 297
Query: 326 EPV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
EPV GG + + S + VTP+E+EAIERL+A+GF LV++ +FA
Sbjct: 298 EPVQEAGGQGGGSGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFA 357
Query: 377 CNKNEELAANYLL 389
C KNE LAAN+LL
Sbjct: 358 CEKNENLAANFLL 370
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 140/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 151 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 207
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 208 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 247
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 248 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 307
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 308 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 367
Query: 376 ACNKNEELAANYLL 389
AC K E LAAN+LL
Sbjct: 368 ACEKRENLAANFLL 381
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 55
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 140/253 (55%), Gaps = 34/253 (13%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 265
IP E AV +A++ G A T+ +PL+
Sbjct: 229 IPGDRESQAVVDPPQAASTGAPQASAVAAAGATTTAATTTTSSGGHPLE----------- 277
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++N
Sbjct: 278 --------FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLN 329
Query: 326 EPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
EPV+ + + S + VTP+E+EAIERL+A+GF LV++ +FA
Sbjct: 330 EPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFA 389
Query: 377 CNKNEELAANYLL 389
C KNE LAAN+LL
Sbjct: 390 CEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 143/242 (59%), Gaps = 35/242 (14%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP- 216
AS L+ G+ LE T+ I++MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 125 ASALLTGTELEKTITNIVNMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPE 177
Query: 217 -PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
PVA P T + A + + DL + LP G L+ L
Sbjct: 178 NPVA-----------PNHTNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESL 218
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 335
R + FQ LR++VQ +P+IL +L +G+ NP +++LI E+Q +F+R++ E + +
Sbjct: 219 RTNPLFQQLRSVVQQDPRILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDE 274
Query: 336 LGQLASAMPQAVTV--TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 393
+G+ S P T+ TP+E E++ERL+A+GF R V+E + C KNEELAANYLL++
Sbjct: 275 VGE-TSQFPMQTTIQLTPQEAESVERLQALGFPRNAVIEAYLICEKNEELAANYLLENSA 333
Query: 394 EF 395
+F
Sbjct: 334 DF 335
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTK 76
+ + E +VV+L+K
Sbjct: 59 DVGIKEGERLVVLLSK 74
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 142/249 (57%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ +A+QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQRAEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ + E +FVVVM+TK
Sbjct: 63 DYHIDEKNFVVVMVTKA 79
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 135/419 (32%), Positives = 192/419 (45%), Gaps = 78/419 (18%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E + E
Sbjct: 69 LKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIESYNIEEK 125
Query: 68 SFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLWHRHNLSL 127
F+V M++ +PK P R
Sbjct: 126 GFIVCMVS-------------------KPKASSSTATPSQAPSTPSRAATSTPAAPPAPA 166
Query: 128 NLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETV 187
SD S L++GS EA + + MG + R+ +
Sbjct: 167 PSTNASATAPPATPSPAAATQP-SDAAFNDPSALLSGSQGEAVISHMESMG---FPRDDI 222
Query: 188 IRALRAAYNNPERAVEYLYSGIPEQ--------------------TAVPPVARASAGGQA 227
RA+RAA+ NP RA+EYL +GIPE + PP A A
Sbjct: 223 NRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQPPAASA-----G 277
Query: 228 GNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAGAG--TLDFLRNS 278
GN PA T ++P AA A T GP+ GS AG G LDFLRN+
Sbjct: 278 GNAPATTGGEEPVNLFEAAAQAGTQEGPHGA----------RSGSAAGEGLPNLDFLRNN 327
Query: 279 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 338
FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E EG+ G
Sbjct: 328 PHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE-----EGD--GA 380
Query: 339 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
L Q + VT EER+AIERL +GF R +V+E +FAC+KNEELAAN+L ++ + ED
Sbjct: 381 LPPGTHQ-IHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEELAANFLFENTDDPED 438
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 25/249 (10%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 171 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 227
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
IP R S G +PP Q + A S A S+ G
Sbjct: 228 IPGD-------RESQG--MADPP-----QAASTAASPSSAVAAAAAATTTTTTTTTSSTG 273
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 274 GHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 333
Query: 329 E--------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 380
+ G G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KN
Sbjct: 334 QESGQGSGGSGSGGGVVEAGSRHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKN 393
Query: 381 EELAANYLL 389
E LAAN+LL
Sbjct: 394 ENLAANFLL 402
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ + V +K+ IE +G D +P + Q LI+ GK+L D T L
Sbjct: 1 MQITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALN 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 147/253 (58%), Gaps = 38/253 (15%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 213
S+LV G+ A + +++MG ++R V A+RAA+NNP+RAVEYL +GIPE
Sbjct: 136 SSLVLGAQRNAVIDNMVEMG---YERSQVELAMRAAFNNPDRAVEYLLNGIPESVRQAQE 192
Query: 214 ------AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF------PQGLP 261
A A +A +GN AAPA ++ P A P +LF QG
Sbjct: 193 QEQAAAAAAATAATNATAASGN----------AAPANSTQPAA-PGNLFEQAAAHAQGEE 241
Query: 262 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
G+ +G L FLR QFQ LR +VQ NPQ+L+ +LQ++G+ NP L ++I ++ FL
Sbjct: 242 ESGA-SGEDPLGFLRELPQFQQLRQIVQQNPQMLEGILQQIGESNPALAQIISQNPEAFL 300
Query: 322 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
+L+ E V+G G L Q + +TPEE ++IERL +GFDR +V++ + AC+KNE
Sbjct: 301 QLLAEGVDGE-----GVLPPGTIQ-IEITPEENQSIERLCQLGFDRNIVIQAYLACDKNE 354
Query: 382 ELAANYLLDHMHE 394
ELAANYL +H HE
Sbjct: 355 ELAANYLFEHGHE 367
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M++ K L+ F + +V P+ V +VK+ I+ QG Y +Q LI+ G++L D T+
Sbjct: 1 MQLTFKNLQQQKFVVPDVDPKTTVLEVKQKIKEQQG---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKV 77
EE + E F+V M+++
Sbjct: 58 EEYDIKEKDFIVCMVSRA 75
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 143/251 (56%), Gaps = 33/251 (13%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 173 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 229
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
G+ +Q + P A A T P ++ + + +G
Sbjct: 230 -----------------GDRESQAVVEPPQA-AGTGAPQSSAVAAGAATTTATTTTTSSG 271
Query: 271 T--LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 272 GHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
Query: 329 E----------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 378
+ G + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 332 QEAGSQGGGGGGSGNAGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 391
Query: 379 KNEELAANYLL 389
KNE LAAN+LL
Sbjct: 392 KNENLAANFLL 402
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 130/236 (55%), Gaps = 44/236 (18%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S LV G + V+ I +MG + ++ V RALRA+YNNP+RAVEYL +G P
Sbjct: 137 STLVVGEQYKQMVESITEMG---YPQDQVERALRASYNNPDRAVEYLVTGFP-------- 185
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 278
A NP A Q P G+ G L FLRN
Sbjct: 186 PEEEEARAAENPRAPRQ-------------------------PGAGTQ---GDLSFLRNQ 217
Query: 279 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--L 336
QFQ +R ++ NP +L ++Q+LG NP L+RLI ++Q DF+RL+NE + EG + L
Sbjct: 218 PQFQQMRNAIRDNPALLDTIIQQLGSNNPDLLRLITQNQDDFMRLLNEEDDAAEGALPEL 277
Query: 337 GQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
G+ A A V VTP++REAIERL+A+GF LV+E +FAC+KNE+LA N+LL
Sbjct: 278 GEGAPAGGPLVIEAHVTPQDREAIERLKALGFPEHLVVEAYFACDKNEDLAVNFLL 333
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VK L F IE+ + V D+K+ I ++G+ +PA Q LI QG+++ D ++
Sbjct: 3 LTVNVKCLTNELFTIEIDDDCTVKDMKEKISEIKGA-AFPAVHQKLIAQGRIMADQDKVK 61
Query: 61 ENKVAENSFVVVMLTKVIRFHQVG 84
+ FVV+M++K Q G
Sbjct: 62 TYDLKSVKFVVIMVSKPATGAQPG 85
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 139/245 (56%), Gaps = 22/245 (8%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
+ Y +AS L+ G+ LE T+ I++MG ++R VI A+RAA+NNP+RAVEYL SGIP
Sbjct: 115 NTYESSASALITGTELETTINNIVNMG---FERNQVIAAMRAAFNNPDRAVEYLTSGIP- 170
Query: 212 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANP-LDLFPQGLPNMGSNAGAG 270
P GQ + +Q P NP + Q N + G
Sbjct: 171 ----LPGIIIQGQGQGQGQSEVSLSQAATTPI-------NPEMSDINQISTNASGDTVTG 219
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
LD LR + FQ LR +VQ +P+IL +L +G+ NP +++LI E+Q +F+RL+ E
Sbjct: 220 ALDSLRTNPIFQQLRMVVQQDPRILPELLARVGQTNPEILQLITENQEEFIRLM----ER 275
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
+ + +G++ A +V +T +E EA+ERL+ +GF R LE F C KNEELAANYL++
Sbjct: 276 TDSDDIGEINGAT--SVYLTQQEAEAVERLQGLGFPRNAALEAFLICEKNEELAANYLIE 333
Query: 391 HMHEF 395
+ +F
Sbjct: 334 NSADF 338
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+T++ T EIEV+ V +K+ IE AS+Q LI G++L D T++
Sbjct: 1 MKIKVRTVQNTEHEIEVEDNFTVLQIKQLIEAKNSQ--MTASRQKLIFAGRILGDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTK 76
+ + E +VV+++K
Sbjct: 59 DIGIKEGERLVVLVSK 74
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 197/411 (47%), Gaps = 59/411 (14%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M + K L+ F I +V + K+S++K+ I+T Q Y +Q LI+ G++L D
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILAD---- 53
Query: 60 EENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQL 119
K + + + Q F + RPK P+ +
Sbjct: 54 ---------------DKTVGEYNIKEQDFIVCMVSRPKTSTS--TPKSAASPAPNPPASV 96
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQA---ASNLVAGSNLEATVQQILD 176
+ + + + + + + +A A+ L G+ V+ +++
Sbjct: 97 PEKKVEAPSSTVAESTSTTQTVAAAAPSNPDTTATSEAPIDANTLAVGAQRNVAVENMVE 156
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 236
MG ++R V RA+RAA+NNP+RAVEYL +GIPE + R A Q
Sbjct: 157 MG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDI----LNRQREESAAA---LAAQQ 206
Query: 237 QQPAAPAPTSGPNANPLDLFPQGLPNMGSN-------AGAGTLDFLRNSQQFQALRTMVQ 289
QQ A APTS P +LF Q + N G L FLR+ QFQ LR +VQ
Sbjct: 207 QQSEALAPTS--TGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQ 264
Query: 290 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--- 346
NPQ+L+ +LQ++G+ +P L + I ++ FL+L+ EG EG SA+P
Sbjct: 265 QNPQMLETILQQIGQGDPALAQAITQNPEAFLQLL---AEGAEGE------SALPSGGIQ 315
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ +T EE E+I+RL +GFDR +V++ + AC+KNEELAANYL +H HE ED
Sbjct: 316 IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 141/250 (56%), Gaps = 29/250 (11%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 171 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 227
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
IP G+ +Q P A + + P++ ++ G
Sbjct: 228 IP-----------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPG 270
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 271 GHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 330
Query: 329 EGGEGNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
+ G G + + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 331 QEAGGQGGGGGGGSGGIGEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 390
Query: 380 NEELAANYLL 389
NE LAAN+LL
Sbjct: 391 NENLAANFLL 400
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 139/252 (55%), Gaps = 36/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 378 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 434
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G T +A ++
Sbjct: 435 GDRESQAVVDPPQAASTG--------------------TPQSSAVAAAAATTTATTTTTS 474
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 475 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 534
Query: 327 PVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 535 PVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 594
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 595 EKNENLAANFLL 606
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 227 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 280
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 144/249 (57%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 195 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 245
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S ++G P Q ++Q P PAP G N L+FLR
Sbjct: 246 ----GSPEPESG--PVQ-ESQAPEQPAPEGGEN---------------------PLEFLR 277
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 278 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPTGELADMSD 337
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 338 VEGEV-GAIGEESPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 396
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 397 LS--QNFDD 403
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77
+V +K+ IE +G D +P S Q LI+ GK+L D + + K+ E +FVVVM+TK
Sbjct: 62 QVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKA 117
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 146/262 (55%), Gaps = 39/262 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+++ +A SNLV G + E+ V +I+ MG +DRE V+ ALRA++NNP+RAVEYL +GIP
Sbjct: 146 ANLIDEAVSNLVTGPSYESMVNEIMLMG---YDREQVVVALRASFNNPDRAVEYLLTGIP 202
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA- 269
+ GQA A+ + A AP G A P G GS+ GA
Sbjct: 203 GRDQ----------GQAAGTTAEATSAGVAPAAPLGGLRA------PTG---TGSSTGAE 243
Query: 270 --GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
L FLRN QFQ +R ++Q N +L +LQE+G++NP L++ I HQ F++++NEP
Sbjct: 244 RVNPLSFLRNQPQFQQMRQLIQQNASLLPALLQEIGRENPELLQEISRHQEQFIQMLNEP 303
Query: 328 -----------VEGGEGNVLGQLASAMP-QAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
+ G + P + + VT +E+E+IERL+ +GF LV++ FF
Sbjct: 304 NPEPVPGGGGGAAATAAGMAGTASGENPMRYIHVTAQEKESIERLKELGFPEGLVIQAFF 363
Query: 376 ACNKNEELAANYLLDHMHEFED 397
AC KNE +AAN+LL F+D
Sbjct: 364 ACEKNENMAANFLL--QQNFDD 383
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ G +L DV L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLK 60
Query: 61 ENKVAENSFVVVMLTK 76
E +++ +FVVVM TK
Sbjct: 61 EYNISDKNFVVVMATK 76
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 136/248 (54%), Gaps = 51/248 (20%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
+A S L G+ E V +I++MG ++R+ V+RAL+A++NNP+RAVEYL +GIP+ +
Sbjct: 151 EAESALATGTEYEGLVTEIMNMG---FERDQVVRALQASFNNPDRAVEYLTTGIPD---L 204
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
P GGQ + G +L+FL
Sbjct: 205 PSERVGDQGGQ-------------------------------DEGEEETAAEGVSSLEFL 233
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV------- 328
R QF +R MVQ NP +L +LQ +G+ NP L++LI HQ +F+R++NEP
Sbjct: 234 RTQPQFITMRRMVQQNPGVLPQLLQSMGQSNPSLLQLISSHQDEFIRMLNEPDDGPQPAA 293
Query: 329 --EGGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
EGG+ +V G+ A P V+ +TP E+EAIERL+ +GF LV++ +FAC KNE L
Sbjct: 294 GGEGGQQSVPGE--GAPPPGVSYIQITPVEKEAIERLKQLGFPEPLVIQAYFACEKNENL 351
Query: 384 AANYLLDH 391
AAN+LL+
Sbjct: 352 AANFLLNQ 359
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KTL+ F++E+ ++ V +K+ IE +G D YP LI+ GK+L D L+
Sbjct: 1 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 60
Query: 61 ENKVAENSFVVVM 73
E + E SFVV+M
Sbjct: 61 EYNIDEKSFVVIM 73
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 188/408 (46%), Gaps = 67/408 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KT + F+I++ PE+ V +K+ IE+ +G D +P Q LI+ G++LKD T L+
Sbjct: 1 MQVTLKTPQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALK 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQL- 119
E + E V+ + P + P Q L
Sbjct: 61 EYNIEEKDSVLSKPATDFLVSSSPGTPASTPAAVTPASRRTSSEPAPEQEQPPEELADAP 120
Query: 120 ---------WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEAT 170
W + S + +L L GQ+ ++V+
Sbjct: 121 VATGPTSTGWTAGDASASNMLAGATGAL--------------TPGQSYQDMVS------- 159
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
+I+ MG +++ VI ALRA++N+P RAVEYL +GIP VA G P
Sbjct: 160 --EIMSMG---YEQAQVIAALRASFNDPHRAVEYLLTGIPGDRGSDTVADLPRAASMGAP 214
Query: 231 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
P+ A A + P+G P L+FL+N QFQ LR ++
Sbjct: 215 PSPASATSTA------------MASSPEGTP----------LEFLQNQLQFQQLRQTIRQ 252
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV---------LGQLAS 341
NP +L +LQ+LG + PHL++LI ++Q F+++++EPV G Q
Sbjct: 253 NPSLLPMLLQQLGLRGPHLLQLISQYQEHFIQMLHEPVPEAGGQSGVGGAGDAGTAQAGH 312
Query: 342 AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
V VTP+EREAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 313 GQANYVRVTPQEREAIERLKALGFPEGLVIQAYFACEKNETLAANFLL 360
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 140/250 (56%), Gaps = 50/250 (20%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
G+P P Q+ AP + AG L+FL
Sbjct: 204 -----------GSPEPEHGSVQESQAPE------------------QPATEAGENPLEFL 234
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VE 329
R+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 235 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADIS 294
Query: 330 GGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+
Sbjct: 295 DVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 353
Query: 388 LLDHMHEFED 397
LL F+D
Sbjct: 354 LLS--QNFDD 361
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIK 62
Query: 61 ENKVAENSFVVVMLTKV 77
E + E +FVVVM+TK
Sbjct: 63 EYHIDEKNFVVVMVTKA 79
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 141/275 (51%), Gaps = 58/275 (21%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
++ LV G+ LE ++++ MG + R+ + ALRAA+NNP+RAVEYL +GIPE V
Sbjct: 127 SSPGLVVGAELEKAIEELQAMG---FPRDQCVAALRAAFNNPDRAVEYLLNGIPEGMMVS 183
Query: 217 PV------------------------ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANP 252
R + G A P PAA ++ P
Sbjct: 184 APAANAAAAAPPPAAAPGADAAAANAVRTAEGATASAPGVGAGGAPPAAADGSA-----P 238
Query: 253 LDLFPQGLP------------NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
L+LFPQG+P TL FLR++ QFQA+R MVQ NP ILQPML
Sbjct: 239 LNLFPQGIPANLAAAGAGGAEEEAQEGEVNTLAFLRDNPQFQAIRAMVQGNPSILQPMLG 298
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEG-----GEGNVLGQLASAMPQAVTVTPEERE 355
EL +QNP L LI +Q +FL+L+NEP + GEG + + + ++ EE E
Sbjct: 299 ELQRQNPQLYHLINSNQEEFLQLLNEPSDFEAQGMGEGEM---------EQIELSKEENE 349
Query: 356 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
A ERL A+GF +E + AC+KNEE+AANYL +
Sbjct: 350 ACERLMALGFTMEQCVEAYIACDKNEEMAANYLFE 384
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTT 58
MK+ +KTL FEIE+ K + ++ ++G A L+ H+G+VL+D T
Sbjct: 1 MKIHLKTLTAQKFEIEISDPSKTTILQCKKLAIEGQPQLGAETDFLVFVHKGQVLEDEKT 60
Query: 59 LEENKVAENSFVVVMLTKVIR 79
+ E ++ E+ FVVVM K +
Sbjct: 61 VSEAEITEDGFVVVMSKKTKK 81
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 185/420 (44%), Gaps = 113/420 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-----------DKVSDVKKNIETVQGSDVYPASQQMLIHQ 49
M + KT+ FEIE+ P K+ +VK I +G YP Q LI+
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTVYFWSNVVLPKIGEVKAKIAEEKGEVEYPIECQKLIYN 60
Query: 50 GKVLKDVTTLEENKVAENSFVVVMLTKVIRFHQVG-------PQLFQLHQQIRPKLQVLR 102
GKVL D T+EE + + FVV+M+ R VG PQ L QI QV
Sbjct: 61 GKVLDDAQTVEEVMIDPSKFVVIMIA---RKKPVGATPAESTPQPSNL--QIPAAAQVTT 115
Query: 103 LLPRHNQRLHLRLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLV 162
+ P SV+D A N
Sbjct: 116 VTP------------------------------------------ASVTDNSPAAPQNSG 133
Query: 163 AGSNL----EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
L E T Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ +
Sbjct: 134 ISDGLTPEQEETAQAIVAMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--- 187
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 278
GG Q A+ G LDFLR
Sbjct: 188 -----GGH------QESAEH-----------------------EEGERGQGLGLDFLRQL 213
Query: 279 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 338
QF+ LR +VQ+NP +L ++Q++ + NP LM IQ +Q +F+ L+N G G G+
Sbjct: 214 PQFEQLRELVQSNPALLPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVGSGGGGGGR 273
Query: 339 LASAMPQ----AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
++ + + A+ VT ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 274 VSPSAGEQRQVAIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 333
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 140/250 (56%), Gaps = 50/250 (20%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 170 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 220
Query: 217 PVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
G+P P Q+ AP + AG L+FL
Sbjct: 221 -----------GSPEPEHGSVQESQAPE------------------QPATEAGENPLEFL 251
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VE 329
R+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 252 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADIS 311
Query: 330 GGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+
Sbjct: 312 DVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 370
Query: 388 LLDHMHEFED 397
LL F+D
Sbjct: 371 LLS--QNFDD 378
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++
Sbjct: 20 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIK 79
Query: 61 ENKVAENSFVVVMLTKV 77
E + E +FVVVM+TK
Sbjct: 80 EYHIDEKNFVVVMVTKA 96
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 141/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++ ++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 133/234 (56%), Gaps = 39/234 (16%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L+ G A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 159 SALLMGEEYNAMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF---- 211
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 278
+PP + Q A PA +AG L FLR
Sbjct: 212 ---------EDPPEEAAESQDALPA----------------------DAGQDPLAFLRTQ 240
Query: 279 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-VEGGEGNVLG 337
QFQ +R ++Q NPQ+L P+LQ++G+ NP L++LI ++Q F+R++NEP GG G G
Sbjct: 241 PQFQQMRQVIQQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVAPGGLGAGAG 300
Query: 338 QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
P + ++P+++EAIERL+++GF LV++ +FAC KNE LAAN+LL
Sbjct: 301 AGVPGGPGVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFLLSQ 354
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTK 76
E + E FVVVM++K
Sbjct: 58 EYNIDEKKFVVVMVSK 73
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 141/252 (55%), Gaps = 23/252 (9%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV G E VQQI++MG ++R V RALRA++NNP+RAVEYL +GIP P
Sbjct: 154 AASALVMGDEYERMVQQIMEMG---YERPQVERALRASFNNPDRAVEYLLTGIPPSQQDP 210
Query: 217 PVARASAGGQAGNP------PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
A S G + P+ T P + T+G PL+ L G N
Sbjct: 211 --AEESHGATEESEEAPRSVPSDTAMSSPQSQHGTTGGGGGPLEA---ALAAEGGNP-ED 264
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-- 328
L FLR QFQ +R ++Q NPQ+L +LQ+LG+ NP L++LI +Q F+R++NEP
Sbjct: 265 PLAFLRFQPQFQQMRQVIQQNPQLLNAVLQQLGQTNPQLLQLISRNQEAFVRMLNEPSPP 324
Query: 329 EGGEGNVLGQLASAMPQAVT------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
GG A VTP+++EAIERL+A+GF LV++ +FAC+KNE
Sbjct: 325 PGGASQGGAPGGLGSGGAPIEVNYGQVTPQDKEAIERLKALGFPEYLVVQAYFACDKNEN 384
Query: 383 LAANYLLDHMHE 394
LAAN+LL ++
Sbjct: 385 LAANFLLSQNYD 396
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IEV P + V K+ IE +G D YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQTFKIEVDPSETVKVFKERIEEKKGKD-YPAHCQKLIYAGKILSDDSKMS 59
Query: 61 ENKVAENSFVVVMLTK 76
E ++ E FVV+M+TK
Sbjct: 60 EYEIDEKKFVVIMVTK 75
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 142/251 (56%), Gaps = 53/251 (21%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GI
Sbjct: 156 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGI------- 205
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGTLDF 274
P +P P GP + P + Q +P G L+F
Sbjct: 206 ----------------------PGSPEPERGPIQESQPQE---QPVPE-----GENPLEF 235
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE----- 329
LR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I +HQ F++++NEP+
Sbjct: 236 LRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEPLGEMADI 295
Query: 330 ---GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
GE +G+ A M + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN
Sbjct: 296 ADIEGEMGAIGEEAPQM-NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAAN 354
Query: 387 YLLDHMHEFED 397
+LL F+D
Sbjct: 355 FLLS--QNFDD 363
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++PE+ V +K+ IE +G D +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTK 76
K+ E +FVVVM+TK
Sbjct: 65 KIDEKNFVVVMVTK 78
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 142/258 (55%), Gaps = 42/258 (16%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---- 211
QA +NLV G N VQ I++MG +DR++V+RAL A++NNPERAVEYL +GIPE
Sbjct: 152 QAEANLVMGENYNTMVQNIMEMG---YDRDSVVRALNASFNNPERAVEYLITGIPEMALQ 208
Query: 212 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 271
P +GG GN A A + SG N D P
Sbjct: 209 DRPAPVGGNEQSGGGGGNIGAALDRSSNLASSGESGGN----DESP-------------- 250
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG- 330
L FLR QFQ +R ++Q NP++L +LQ++G+ NP L++LI E+Q F+ ++NE +G
Sbjct: 251 LAFLRRQAQFQQMRNVIQQNPEMLNAVLQQIGQANPALLQLISENQEAFVNMLNESEDGR 310
Query: 331 ----------GEGNVLGQL-ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
GN G L ++P+ T ++REAIERL+A+GF LV++ + AC K
Sbjct: 311 QAPSGGNDDDDRGNFGGLLDVGSVPE---FTQQDREAIERLKALGFPDELVVQAYIACEK 367
Query: 380 NEELAANYLLDHMHEFED 397
NE LAAN+LL F+D
Sbjct: 368 NENLAANFLLSQT--FDD 383
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ ++E V +K+ IE+ G + YPASQQ LI+ G +L D T+E
Sbjct: 1 MWITIKNLQQQTIKLEFDESQTVQKLKEKIESELGKE-YPASQQKLIYAGCILDDDKTIE 59
Query: 61 ENKVAENSFVVVM 73
KV E F+VVM
Sbjct: 60 SYKVDEKKFIVVM 72
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 139/269 (51%), Gaps = 69/269 (25%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
GQA S L+ G N V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 136 GQAESALLMGENYNTMVNNIMDMG---YEREQVEQALRASFNNPDRAVEYLVTGIPAQLF 192
Query: 215 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 274
P Q +AQ+ + G L F
Sbjct: 193 ------------EDLPEDQLEAQE------------------------QFQDHGQHPLAF 216
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG---- 330
LR QFQ +R ++Q NPQ+L MLQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 217 LRMQPQFQQMREVIQQNPQLLNAMLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGT 276
Query: 331 ------------------GEGNVLGQLASAM-------PQAVTVTPEEREAIERLEAMGF 365
G GN G +A A + +TP+++EAIERL+A+GF
Sbjct: 277 GGRTTPVSASTVAPTSAPGGGNS-GPVAGARRGGPFVETSIIEITPQDKEAIERLKALGF 335
Query: 366 DRALVLEVFFACNKNEELAANYLLDHMHE 394
LV++ +FAC KNE LAAN+LL +H+
Sbjct: 336 PEHLVVQAYFACEKNENLAANFLLSQIHD 364
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAEHQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKV 77
E + E F+VVM+TK+
Sbjct: 58 EYNIDEKKFIVVMVTKL 74
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 154 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--- 210
+ QA S LV G++ E TV ++ MG + R V+RAL+A+YNNP RA+EYL P
Sbjct: 148 FDQALSTLVTGTDYERTVNDMVGMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPT 204
Query: 211 -EQTAVPPVARASAGGQ----AGNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQG-LPNM 263
E+ A P + AGGQ +PP Q+PA + S P +A P PQG L
Sbjct: 205 LEEEAEPQPRGSGAGGQQVPLTSSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAG 262
Query: 264 GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 323
G + + L L QFQALR VQ NP +L +LQE+G+ NP L++LI ++Q +F+ L
Sbjct: 263 GGQSASNVLQGLSQLPQFQALRAAVQQNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDL 322
Query: 324 INEPVEGGEGNVLGQLASAMPQAVT--VTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
+N+P + +G P V+ VT EEREAI+RL+A+GF V++ + AC+KNE
Sbjct: 323 LNQPPQ-----PIGSGQELPPGTVSIQVTQEEREAIDRLKALGFPEGEVIQAYLACDKNE 377
Query: 382 ELAANYLLDHMHEFE 396
LAAN LL + E
Sbjct: 378 TLAANLLLSSADDPE 392
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTKV 77
+ + E++FVVVM++K+
Sbjct: 60 DYSIQESNFVVVMVSKI 76
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 137/254 (53%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+R VEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRGVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G +A
Sbjct: 229 IPGDRESQAVVDPPQAASTG--------------------VPQSSAVAAAAATTTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAI RL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIGRLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 141/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 170 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 220
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 221 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 253
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 254 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 313
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 314 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 372
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 373 LS--QNFDD 379
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 20 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 79
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 80 DYRIDEKNFVVVMVTKA 96
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 140/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ +QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQAPEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIK 62
Query: 61 ENKVAENSFVVVMLTKV 77
E + E +FVVVM+TK
Sbjct: 63 EYHIDEKNFVVVMVTKA 79
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 150/254 (59%), Gaps = 21/254 (8%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
+AAS LV G E V +I+ +G ++RE V+ ALRA+YNNP+RAVEYL GIP + +
Sbjct: 236 EAASILVTGPEYENLVSEIMSIG---YEREQVVAALRASYNNPDRAVEYLLMGIPARASD 292
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAGAGT- 271
+ S NP + + P P N +++F QG P GS AG G+
Sbjct: 293 LHNPQPSRHSTPANPSTPSTEEPPQQPPAPPSSVINDVEVF-QG-PVSGSQPVTAGGGSG 350
Query: 272 -----LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
L+FLRN QFQ +R ++Q NP +L +LQ+LG+ NP L++ I EHQ F++++NE
Sbjct: 351 SIGNPLEFLRNQPQFQQMRQIIQQNPALLPALLQQLGRDNPQLLQQITEHQERFVQMLNE 410
Query: 327 PVEGGEGNVLGQLASA--MPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
P G G G+ A A P + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 411 PQAGDTG---GEDADAHGSPHTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNEN 467
Query: 383 LAANYLLDHMHEFE 396
LAAN+LL + E
Sbjct: 468 LAANFLLQQTWDDE 481
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F IE+ PE V +K+ IE +G D +P+ Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 62 EYKIDEKNFVVVMVTK 77
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 140/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ +QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQAPEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G L PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GALGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIK 62
Query: 61 ENKVAENSFVVVMLTKV 77
E + E +FVVVM+TK
Sbjct: 63 EYHIDEKNFVVVMVTKA 79
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 142/253 (56%), Gaps = 34/253 (13%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 245 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 301
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G + A A A T+ +PL+
Sbjct: 302 IPGDRESQAVVDPPQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHPLE---------- 351
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 352 ---------FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 402
Query: 325 NEPV--------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
NEPV GG + + S + VTP+E+EAIERL+A+GF LV++ +FA
Sbjct: 403 NEPVQESGGQGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFA 462
Query: 377 CNKNEELAANYLL 389
C KNE LAAN+LL
Sbjct: 463 CEKNENLAANFLL 475
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 94 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 147
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 141/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 135/239 (56%), Gaps = 39/239 (16%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
V GQA S L+ G + V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 134 VGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 272
P Q +AQ+ + G L
Sbjct: 191 LF------------EDLPEDQLEAQEQL------------------------QDHGQHPL 214
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 332
FLR QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEP +GG
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPGDGGL 274
Query: 333 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
G +G + + VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 275 GAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLLSQ 333
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKV 77
E + E F+VVM+TK+
Sbjct: 58 EYNIDEKKFIVVMVTKL 74
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 141/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 141/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 140/265 (52%), Gaps = 44/265 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 174 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 230
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q P AS G A A T+
Sbjct: 231 IPGDRESQGMTDPPQAASTGASPSAVAAAAAAAVTTTTTTTTT----------------- 273
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
S+ G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 274 SSTGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 333
Query: 325 NEPVEGG--------------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMG 364
NEPV+ G V + S + VTP+E+EAIERL+A+G
Sbjct: 334 NEPVQESGQGGGGSGGGGGGGGGGGGGGGGVAAEAGSRHMNYIQVTPQEKEAIERLKALG 393
Query: 365 FDRALVLEVFFACNKNEELAANYLL 389
F LV++ +FAC KNE LAAN+LL
Sbjct: 394 FPEGLVIQAYFACEKNENLAANFLL 418
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVML 74
E K+ E +FVVVM+
Sbjct: 61 EYKIDEKNFVVVMV 74
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 140/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + G L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPA------------------------TEGGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 295
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 296 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 389 LDHMHEFED 397
L FED
Sbjct: 355 LS--QNFED 361
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 141/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 158 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 208
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 209 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 241
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 242 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 301
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 302 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 360
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 361 LS--QNFDD 367
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 67
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 68 DYRIDEKNFVVVMVTKT 84
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 141/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPA------------------------TEAGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 295
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 296 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 355 LS--QNFDD 361
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 141/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPA------------------------TEAGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 295
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 296 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 355 LS--QNFDD 361
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 141/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QP+ + AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPS------------------------TEAGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISD 295
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 296 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 355 LS--QNFDD 361
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 141/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPA------------------------TEAGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 295
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 296 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 355 LS--QNFDD 361
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 141/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPA------------------------TEAGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 295
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 296 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 355 LS--QNFDD 361
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 130/243 (53%), Gaps = 48/243 (19%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L+ G A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 159 SALLMGEEYNAMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF---- 211
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 278
+PP + Q A PA +AG L FLR
Sbjct: 212 ---------EDPPEEAAESQDALPA----------------------DAGQDPLAFLRTQ 240
Query: 279 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN---- 334
QFQ +R ++Q NPQ+L P+LQ++G+ NP L++LI ++Q F+R++NEP
Sbjct: 241 PQFQQMRQVIQQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPASAISATPPVA 300
Query: 335 ------VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
G P + ++P+++EAIERL+++GF LV++ +FAC KNE LAAN+L
Sbjct: 301 PGGLGAGAGAGVPGGPGVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFL 360
Query: 389 LDH 391
L
Sbjct: 361 LSQ 363
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTK 76
E + E FVVVM++K
Sbjct: 58 EYNIDEKKFVVVMVSK 73
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 142/249 (57%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 129 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 179
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA T G NPL+ FLR
Sbjct: 180 ----GSPEPEHGSVQESQVSEQPA----TEGAGENPLE-------------------FLR 212
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 213 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 272
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 273 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 331
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 332 LS--QNFDD 338
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77
+K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK
Sbjct: 4 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKA 55
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 140/250 (56%), Gaps = 51/250 (20%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 152 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 202
Query: 217 PVARASAGGQAGNPPAQTQAQQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
G + A Q QP PAP G L+FL
Sbjct: 203 --------GSSEPERAPIQESQPQDQPAP----------------------EGENPLEFL 232
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE------ 329
R+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I +HQ F++++NEP+
Sbjct: 233 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEPLGEMADIA 292
Query: 330 --GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
GE +G+ A M + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+
Sbjct: 293 DIEGEMGAIGEEAPQM-NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 351
Query: 388 LLDHMHEFED 397
LL F+D
Sbjct: 352 LLS--QNFDD 359
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 51/76 (67%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +KTL+ F+I ++P++ V +K+ IE +G + +P S Q LI+ GK+L D ++
Sbjct: 3 VTVTLKTLQQQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIK 62
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 63 EYKIDEKNFVVVMVTK 78
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 136/260 (52%), Gaps = 63/260 (24%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT- 213
GQA S L+ G + V+ I+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q
Sbjct: 134 GQAESALLMGEDYNTMVKNIMDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLF 190
Query: 214 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 273
PP A Q Q Q+Q P A
Sbjct: 191 EDPPEDPPEAQEQ-----LQDQSQDPLA-------------------------------- 213
Query: 274 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---G 330
FLR QFQ +R ++Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEPVE G
Sbjct: 214 FLRMQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPTAG 273
Query: 331 GEGNVLGQLASAMPQA-------------------VTVTPEEREAIERLEAMGFDRALVL 371
VL A A + +TP++R+AIERL+A+GF LV+
Sbjct: 274 AGARVLPAGGVASAAASGGLTGSAGTGAAAGAGGLIQITPQDRDAIERLKALGFPEHLVV 333
Query: 372 EVFFACNKNEELAANYLLDH 391
+ +FAC KNE LAAN+LL
Sbjct: 334 QAYFACEKNENLAANFLLSQ 353
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G PA QQ LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKQKIETQKG---LPAEQQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTK 76
E + E F+VVM+TK
Sbjct: 58 EYNIDEKKFIVVMVTK 73
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 140/259 (54%), Gaps = 53/259 (20%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S++ +A S L+ G E VQ I+DMG + R+ V +ALRA+YNNP+RAVEYL +GIP
Sbjct: 117 SNLSSEAESALLMGEEYENMVQNIVDMG---YPRDQVEQALRASYNNPDRAVEYLINGIP 173
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
A G+ Q AAP+ + G+ S+A +
Sbjct: 174 ------------AMGE----------DQEAAPSMS-------------GIDERQSDA-SD 197
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
L FLR+ QFQ ++ +VQ NPQ+L +LQ+LG+ NP L+ LI ++Q F+RL+NEP G
Sbjct: 198 PLAFLRSQPQFQQMKQVVQQNPQLLNAVLQQLGQTNPALLNLISQNQESFVRLLNEPSAG 257
Query: 331 GEGNVLGQLASA------------MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 378
G A + TP++++AIERL+A+GF LV++ +FAC
Sbjct: 258 AAPAATGNAPPAPVVAQGGGGTPPQGTTIQFTPQDKDAIERLKALGFPEHLVVQAYFACE 317
Query: 379 KNEELAANYLLDHMHEFED 397
KNE LAAN+LL F+D
Sbjct: 318 KNENLAANFLLS--QNFDD 334
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+ L +F I ++P V D+K+ IE +G D Y Q LI++GK+LKD L
Sbjct: 1 MKITVRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKD-YRWDYQRLIYRGKILKDEAPLS 59
Query: 61 ENKVAENSFVVVMLTK 76
E + E+ F+V+M++K
Sbjct: 60 EYNIDEDKFIVIMVSK 75
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 141/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 129 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 179
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 180 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 212
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 213 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 272
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 273 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 331
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 332 LS--QNFDD 338
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77
+K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK
Sbjct: 4 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 55
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 141/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 170 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 220
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 221 ----GSPEPEHGSVQESQVSEQPA------------------------TEAGENPLEFLR 252
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 253 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 312
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 313 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 371
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 372 LS--QNFDD 378
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 20 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 79
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 80 DYRIDEKNFVVVMVTKT 96
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 142/250 (56%), Gaps = 50/250 (20%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
G+P P + Q+ S + P + AG L+FL
Sbjct: 204 -----------GSPEPEHSSVQE-------SQVSEQP-----------ATEAGENPLEFL 234
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VE 329
R+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 235 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADIS 294
Query: 330 GGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+
Sbjct: 295 DVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 353
Query: 388 LLDHMHEFED 397
LL F+D
Sbjct: 354 LLS--QNFDD 361
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 134/246 (54%), Gaps = 36/246 (14%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL +GIP ++ P
Sbjct: 189 AASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLTGIPAESEQP 245
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-----GAGT 271
P Q+ P P S P G+ + A
Sbjct: 246 P-------------------QEVVRPTPVSNPTPPAPQRAQPPPAAAGAESGGAQASANP 286
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
L+FLR+ QFQ +R ++Q NP +L +LQ+LG+ NP L++ I +HQ F++++N
Sbjct: 287 LEFLRHQPQFQQMRQIIQQNPSLLPALLQQLGRDNPQLLQQITQHQERFVQMLN------ 340
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
A+ + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 341 -EPEAEAPAAPQTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL-- 397
Query: 392 MHEFED 397
F+D
Sbjct: 398 QQNFDD 403
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 62 EYKIDEKNFVVVMVTK 77
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 146/272 (53%), Gaps = 46/272 (16%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP 216
S+L GS E+ + Q+ +MG + R V A+RAA+NNP+RAVEYL +GIPE Q P
Sbjct: 148 SSLAMGSARESAILQMTEMG---FPRPDVEAAMRAAFNNPDRAVEYLMTGIPEHLQREAP 204
Query: 217 PVARASAGGQAGNPPAQTQA-----------QQPAAPAPTSGPNANPLDLF--------- 256
P + A PP Q QPAA A + P++LF
Sbjct: 205 PAQSSRA------PPTQPTTGATAAPAATTESQPAAAAAAAADVDEPVNLFEAAAAQRSG 258
Query: 257 PQGLPNMGSNAGA------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGK 304
+G P G A LDFLRN+ QFQ LR ++Q +PQ+L+P+LQ++G+
Sbjct: 259 SRGTPAGGRGGAAVNPLAALAGGGGANLDFLRNNPQFQQLRQVIQEHPQMLEPILQQVGQ 318
Query: 305 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG 364
NP L +LI + FLRL+ E ++ E + VT EER+AIERL +G
Sbjct: 319 ANPQLAQLISTNPEGFLRLLGEGIDEEELAGAAPGGGLA---IHVTEEERDAIERLCQLG 375
Query: 365 FDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
F+R +V++ +FAC+KNEE+AAN+L ++ + E
Sbjct: 376 FERDVVIQAYFACDKNEEMAANFLFENPQDPE 407
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ K LK F IE D +S VK I+T +G + S LI+ GK+L+D T+
Sbjct: 5 VKLTFKDLKNERFTIEAGTADTISTVKARIQTEKG---WEPSTVKLIYSGKILQDAQTVG 61
Query: 61 ENKVAENSFVVVMLTKV 77
+ E F+V M++K
Sbjct: 62 SYNIDEKGFIVCMVSKA 78
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 140/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + G L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPA------------------------TEGGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 295
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 296 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 355 LS--QNFDD 361
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 201/447 (44%), Gaps = 83/447 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
V E F+VVMLT+ QL + KL Q + +
Sbjct: 60 SYNVDEKKFIVVMLTR----DSSSSNRNQLSVKESNKLTSTD---DSKQSMPCEEANHTN 112
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + +L L L+ + + + +A SNL+ G TV +++MG
Sbjct: 113 SPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG-- 170
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+ RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP + P+
Sbjct: 171 -YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNESTNP-----SLIPS 220
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
P P S +A + + + +FLR+ QF +R+++ NP +L +LQ
Sbjct: 221 GPQPASATSAE-----------RSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQ 269
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPV--EGGEGNVLGQLASA------------MPQA 346
++G+ NP L++LI E+Q FL ++N+P+ E G + +++A P
Sbjct: 270 QIGQTNPALLQLISENQDAFLNMLNQPIDRESESGATVPPVSNARIPSTLDNVDLFSPDL 329
Query: 347 VTVTPEER------------------------------------EAIERLEAMGFDRALV 370
T +R +AIERL+A+GF ALV
Sbjct: 330 EVATSAQRSAAGTSAAHQSGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALV 389
Query: 371 LEVFFACNKNEELAANYLLDHMHEFED 397
L+ +FAC KNEE AAN+LL FED
Sbjct: 390 LQAYFACEKNEEQAANFLLS--SSFED 414
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 141/269 (52%), Gaps = 45/269 (16%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D+ +A S LV GS+ + V +++ MG ++RE V+ ALRA+YNNP+RAVEYL SGIP
Sbjct: 149 TDLLSEAVSTLVTGSSYDTMVNEMMLMG---YEREQVVAALRASYNNPDRAVEYLLSGIP 205
Query: 211 EQTAVPPVARASAGGQAGNPP-AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
Q + S G P +++ A A + ++P S G
Sbjct: 206 GQD------QGSRTGPDSTPAVSESPAAPAGGTAAPTSTESSP------------SAGGG 247
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-- 327
L FLRN QF +R ++Q N +L +LQE+G++NP L++ I HQ F++++NEP
Sbjct: 248 NPLGFLRNQPQFHVMRQLIQQNAALLPALLQEIGRENPELLQEISNHQEQFIQMLNEPNP 307
Query: 328 -------------------VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 368
G G + + VTP+E+EAIERL+A+GF
Sbjct: 308 DPVPGGGGGGGGGGGGGGGARGAGGTGADTSGESQMSYIQVTPQEKEAIERLKALGFPEG 367
Query: 369 LVLEVFFACNKNEELAANYLLDHMHEFED 397
LV++ +FAC KNE LAAN+LL F+D
Sbjct: 368 LVIQAYFACEKNENLAANFLL--QQNFDD 394
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G + + + Q LI+ GK+L D T L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 140/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
E V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEAEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 139/250 (55%), Gaps = 49/250 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
G+P P Q+ TS AG L+FL
Sbjct: 204 -----------GSPEPEHGSVQESQVSEQTS-----------------TEPAGENPLEFL 235
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VE 329
R+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADIS 295
Query: 330 GGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+
Sbjct: 296 DIEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 354
Query: 388 LLDHMHEFED 397
LL F+D
Sbjct: 355 LLS--QNFDD 362
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 140/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEITSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QP PT NPL+ FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQP----PTEAAGENPLE-------------------FLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 140/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 165 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 215
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ +QPA A AG L+FLR
Sbjct: 216 ----GSPEPEHGSVQESQVPEQPAVEA-----------------------AGENPLEFLR 248
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 249 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 308
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 309 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 367
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 368 LS--QNFDD 374
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77
+V +K+ IE +G D +P + Q LI+ GK+L D ++E + E +FVVVM+TK
Sbjct: 36 EVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKA 91
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 141/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 254 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 304
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 305 ----GSPEPEHGSVQESQVSEQPA------------------------TEAGENPLEFLR 336
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 337 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 396
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 397 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 455
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 456 LS--QNFDD 462
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK
Sbjct: 126 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 180
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 140/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
E V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEAEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 140/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 166 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 216
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + G L+FLR
Sbjct: 217 ----GSPEPEHGSVQESQVSEQPA------------------------TEGGENPLEFLR 248
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 249 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 308
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 309 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 367
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 368 LS--QNFDD 374
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77
+K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK
Sbjct: 41 LKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKA 92
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 141/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 276 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 326
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 327 ----GSPEPEHGSVQESQVSEQPA------------------------TEAGENPLEFLR 358
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 359 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 418
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 419 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 477
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 478 LS--QNFDD 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK
Sbjct: 148 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 202
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 201/447 (44%), Gaps = 83/447 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
V E F+VVMLT+ QL + KL Q + +
Sbjct: 60 SYNVDEKKFIVVMLTR----DSSSSNRNQLSVKESNKLTSTD---DSKQSMPCEEANHTN 112
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + +L L L+ + + + +A SNL+ G TV +++MG
Sbjct: 113 SPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG-- 170
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+ RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP + P+
Sbjct: 171 -YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNESTNP-----SLIPS 220
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
P P S +A + + + +FLR+ QF +R+++ NP +L +LQ
Sbjct: 221 GPQPASATSAE-----------RSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQ 269
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPV--EGGEGNVLGQLASA------------MPQA 346
++G+ NP L++LI E+Q FL ++N+P+ E G + +++A P
Sbjct: 270 QIGQTNPALLQLISENQDAFLNMLNQPIDRESESGATVPPVSNARIPSTLDNVDLFSPDL 329
Query: 347 VTVTPEER------------------------------------EAIERLEAMGFDRALV 370
T +R +AIERL+A+GF ALV
Sbjct: 330 EVATSAQRSAAGTSAAHQSGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALV 389
Query: 371 LEVFFACNKNEELAANYLLDHMHEFED 397
L+ +FAC KNEE AAN+LL F+D
Sbjct: 390 LQAYFACEKNEEQAANFLLS--SSFDD 414
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 140/241 (58%), Gaps = 43/241 (17%)
Query: 162 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 221
V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 11 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------- 56
Query: 222 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 281
+A PP Q +++ P P P NPL+ FLR QF
Sbjct: 57 -GSPEAERPPVQ-ESRAPEQPQVEGQPGENPLE-------------------FLREQPQF 95
Query: 282 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV---LGQ 338
Q +R ++Q NP +L +LQ+LG++NP L++ I +HQ F++++NEP+ G G++ +G
Sbjct: 96 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEPL-GELGDLEGEMGA 154
Query: 339 LASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+ PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+
Sbjct: 155 IGDESPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFD 212
Query: 397 D 397
D
Sbjct: 213 D 213
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 134/267 (50%), Gaps = 70/267 (26%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT- 213
GQA S L+ G + V I+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q
Sbjct: 133 GQAESALLMGEDYNTMVNNIMDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLF 189
Query: 214 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 273
PP A Q Q Q+Q P A
Sbjct: 190 EDPPEDPPEAQEQ-----LQDQSQDPLA-------------------------------- 212
Query: 274 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 333
FLR QFQ +R ++Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEPVE G
Sbjct: 213 FLRMQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPATG 272
Query: 334 NVLGQLASA-----------------------------MPQAVTVTPEEREAIERLEAMG 364
L ++ + +TP++R+AIERL+A+G
Sbjct: 273 AGARVLPTSGGGVASATAAAAAGGAVNGGAGTGAAAGVGSGTIQITPQDRDAIERLKALG 332
Query: 365 FDRALVLEVFFACNKNEELAANYLLDH 391
F LV++ +FAC KNE LAAN+LL
Sbjct: 333 FPEHLVVQAYFACEKNENLAANFLLSQ 359
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTK 76
E + E F+VVM+TK
Sbjct: 58 EYNIDEKKFIVVMVTK 73
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 185/391 (47%), Gaps = 60/391 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK ++V P D + K+ + TV+ SD AS+ ++ GKVL+D +
Sbjct: 1 MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSD---ASKIKFVYSGKVLQDDKDFD 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
KV EN ++ ML P +F+ + PK L
Sbjct: 58 AFKVKENDVIIFML----------PSVFKKEE---PK--------------------NLE 84
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+R + + + + + + S + AS G++ E ++ I++MG
Sbjct: 85 NRIDKTSTESSKTTTIAAPGIAVPPVPVNTSGSFN--ASTFAVGNDRENAIRNIMEMG-- 140
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+DR V ALRAA+NNP+RAVEYL +G+P P SA + P + +
Sbjct: 141 -YDRSQVEAALRAAFNNPDRAVEYLLTGLPVNNEEPIAGSRSAPNDGRSQPVSSTGVES- 198
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT--MVQANPQILQPM 298
TS A DLF + A +G N+Q+ ++ ++Q NP++++P
Sbjct: 199 ----TSTETAPGTDLF-----EAAAVASSGQQQ-RENTQRDDLMQIGELIQNNPEMVEPF 248
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 358
LQ++ NP L LIQ++ +F+R + +EG G G+L Q + V PEE AI
Sbjct: 249 LQQIASSNPQLAELIQQNPEEFMRAL---MEGDNGE--GELEDEGVQ-IQVAPEEEAAIN 302
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLL 389
RL +GFDR LV++V+FAC+KNEE+ A+ L
Sbjct: 303 RLCELGFDRNLVVQVYFACDKNEEMTADLLF 333
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 142/250 (56%), Gaps = 49/250 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP P
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP---GSP 206
Query: 217 PVARASAGGQAGNPPAQTQ-AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
+S ++Q ++QPA A G L+FL
Sbjct: 207 EPEHSSV--------QESQVSEQPATEA-----------------------VGDNPLEFL 235
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VE 329
R+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADIS 295
Query: 330 GGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+
Sbjct: 296 DVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 354
Query: 388 LLDHMHEFED 397
LL F+D
Sbjct: 355 LLS--QNFDD 362
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 130/468 (27%), Positives = 211/468 (45%), Gaps = 111/468 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I+ PE V ++K I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFAIDFDPEKTVLELKNQIFYERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGP----QLFQLHQQI---------RPKLQ-------- 99
KV E F+VVML++ I Q Q ++Q+ +P LQ
Sbjct: 60 SYKVDEKKFIVVMLSRDISGTSSNTNADGQRKQPNEQMEGSTTGIDKKPVLQNANASSAE 119
Query: 100 --VLRLLPRHNQRLHLRLLHQ-LWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQ 156
++ R N L + + + +S + + + L+ +L + S + +
Sbjct: 120 KGIINNNNRSNDVLGVEIERSGSSSQTQISTAPEVPIPATDYSSIDLVGELANAS-LQSR 178
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP
Sbjct: 179 AESNLLMGEEFNRTVASMVEMG---YPRDQVERAMAASFNNPERAVEYLINGIP------ 229
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
Q + P PN GLP + + A +FLR
Sbjct: 230 ------------------QDENLFNPGDEEEPNRVETSHRQGGLP---AESAADPFEFLR 268
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE------- 329
+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 269 SQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPLDEEAADNA 328
Query: 330 ----------------------------GGEGNVLGQLASAMPQA--------------- 346
GG +V G ++ A
Sbjct: 329 QRAGRTQSSSPRRTESTPTTNPSEESNAGGHRSVAGSDNPSIAIAPEGDDSVATGRNIQA 388
Query: 347 -----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
+ +TP++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL
Sbjct: 389 ENLATIRLTPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLL 436
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 130/241 (53%), Gaps = 42/241 (17%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASA 223
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 1 ENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------ 51
Query: 224 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 283
PP P +PA + + +G L+FLRN QFQ
Sbjct: 52 ------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEFLRNQPQFQQ 97
Query: 284 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------ 331
+R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 98 MRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGG 157
Query: 332 ---EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 158 GGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 217
Query: 389 L 389
L
Sbjct: 218 L 218
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 144/251 (57%), Gaps = 37/251 (14%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL + E P
Sbjct: 167 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTVRKELLQEP 223
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LDF 274
GG+ P + + + P +PA + G+ G G L+F
Sbjct: 224 -------GGERWGGPGRAERRPPVSPA--------------RAEYAGGAAVGTGENPLEF 262
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------V 328
LR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 263 LRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDI 322
Query: 329 EGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN
Sbjct: 323 SDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAAN 381
Query: 387 YLLDHMHEFED 397
+LL F+D
Sbjct: 382 FLLS--QNFDD 390
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 45/71 (63%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVV 71
+ ++ E +FVV
Sbjct: 63 DYRIDEKNFVV 73
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AA + V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 156 AAPSTVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 206
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QP+ + AG L+FLR
Sbjct: 207 ----GSPEPEHGSVQESQVSEQPS------------------------TEAGENPLEFLR 238
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 239 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISD 298
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 299 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 357
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 358 LS--QNFDD 364
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 145/268 (54%), Gaps = 52/268 (19%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
+++ +A S LV G + E V +++ MG ++RE V+ +LRA++NNP+RAVEYL +GIP
Sbjct: 149 NMFEEATSALVTGQSYENMVTEMMLMG---YEREQVVASLRASFNNPDRAVEYLLTGIPA 205
Query: 212 --------QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 263
VPPV GG G P T + PA T ++
Sbjct: 206 GEEGHASADPVVPPV-----GG--GTPALNTGSM--TTPASTG---------------SL 241
Query: 264 GSNA-GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 322
S A GA L FL N QF +R ++Q NP +L +LQ++G++NP L++ I HQ F++
Sbjct: 242 ASAATGANPLGFLVNQPQFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQ 301
Query: 323 LINEPVEGGEGNVLGQLA-------------SAMPQAVTVTPEEREAIERLEAMGFDRAL 369
++NEP + G G S M + VTP+E+EAIERL+A+GF L
Sbjct: 302 MLNEPAQEGGQGGGGVGGGGGVGVGVGGEAGSGM-NYIQVTPQEKEAIERLKALGFPEGL 360
Query: 370 VLEVFFACNKNEELAANYLLDHMHEFED 397
V++ +FAC KNE LAAN+LL F+D
Sbjct: 361 VIQAYFACEKNENLAANFLL--QQNFDD 386
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVM 73
E K+ E +FVVVM
Sbjct: 61 EYKIDEKNFVVVM 73
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 57/246 (23%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 219
N + + LEAT+Q I+DMG +DR V +ALRA++NN ERAVEYL +GIPE+
Sbjct: 128 NTTSDAELEATIQSIMDMG---YDRPQVEQALRASFNNRERAVEYLITGIPEELL----- 179
Query: 220 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 279
+Q A + P L FLR+
Sbjct: 180 ----------------HEQEAEESSDEDP-----------------------LAFLRDQP 200
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 339
QFQ +R ++Q NP +L +LQ++G+ NP L+++I +HQ F+R++NEPV V
Sbjct: 201 QFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDE 260
Query: 340 ASA---MPQ-----AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
A PQ + V+ +++EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 261 NVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS- 319
Query: 392 MHEFED 397
F+D
Sbjct: 320 -QNFDD 324
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D + A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 59
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V+M+TK
Sbjct: 60 SYNIDEKKFIVIMVTK 75
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 142/248 (57%), Gaps = 24/248 (9%)
Query: 162 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 217
+ G++ E TV ++ MG + R V+RAL+A+YNNP RA+EYL P E+ A P
Sbjct: 110 ITGTDYERTVNDMVGMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQ 166
Query: 218 VARASAGGQ----AGNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQG-LPNMGSNAGAGT 271
+ AGGQ +PP Q+PA + S P +A P PQG L G + +
Sbjct: 167 PRGSGAGGQQVPLTSSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNV 224
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG- 330
L L QFQALR VQ NP +L +LQE+G+ NP L++LI ++Q +F+ L+N+P +
Sbjct: 225 LQGLSQLPQFQALRAAVQQNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQPPQPI 284
Query: 331 GEGNVL--GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
G G L G + ++ VT EEREAI+RL+A+GF V++ + AC+KNE LAAN L
Sbjct: 285 GSGQELPPGTV------SIQVTQEEREAIDRLKALGFPEGEVIQAYLACDKNETLAANLL 338
Query: 389 LDHMHEFE 396
L + E
Sbjct: 339 LSSADDPE 346
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTKV 77
+ + E++FVVVM++K+
Sbjct: 60 DYSIQESNFVVVMVSKI 76
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 129/232 (55%), Gaps = 36/232 (15%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQ 226
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G
Sbjct: 2 VTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTG-- 56
Query: 227 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 286
AP S A +++G L+FLRN QFQ +R
Sbjct: 57 ----------------APQSSAVAAAAAT--TTATTTTTSSGGHPLEFLRNQPQFQQMRQ 98
Query: 287 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLG 337
++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ +
Sbjct: 99 IIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIA 158
Query: 338 QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
+ S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 159 EAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 210
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 136/245 (55%), Gaps = 52/245 (21%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 217
+S LV GS L+ + +I +MG +DR +V RA+ AA+NNPERAVE+L +G +P
Sbjct: 126 SSRLVMGSELDQNINRICEMG---FDRASVERAMAAAFNNPERAVEFLSTG-----NIPS 177
Query: 218 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 277
V + G Q N PA+ QA+ NA D+F L++
Sbjct: 178 VNLENPGTQ--NTPAE-QAE-----------NAGGEDVF----------------RMLQS 207
Query: 278 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-----EPVEGGE 332
F+ +R VQ++PQ+LQ +L+ +G+ NP L++ I + Q +F+ LIN +P E
Sbjct: 208 HPMFEQIRQAVQSDPQLLQQILENIGQTNPELLQTIIQRQDEFMDLINSGAEVDPYSNPE 267
Query: 333 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
N P V++T E E+IERLE +GF R V+E + AC+KNEELAANYLL++
Sbjct: 268 TN---------PNIVSLTQVEMESIERLEGLGFSRPAVIEAYLACDKNEELAANYLLENS 318
Query: 393 HEFED 397
H+F D
Sbjct: 319 HDFTD 323
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 136/250 (54%), Gaps = 50/250 (20%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG +++E V+ ALRA++NNP RAVEYL GI
Sbjct: 151 AASTLVTGSEYETMLTEIMSMG---YEQEQVVAALRASFNNPHRAVEYLLMGI------- 200
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
P +P P GP Q G L+FLR
Sbjct: 201 ----------------------PGSPEPEGGPIQE-----SQSNEQAAVEGGENPLEFLR 233
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP--------- 327
+ QFQ +R ++Q NP +L +LQ+LG++NPHL++ I HQ F++++NEP
Sbjct: 234 DQPQFQNMRQVIQQNPALLPALLQQLGQENPHLLQQISLHQEQFIQMLNEPSGELGDMSD 293
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
+E GE +G + M + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+
Sbjct: 294 IE-GEIGAIGDEPTQM-SYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 351
Query: 388 LLDHMHEFED 397
LL F+D
Sbjct: 352 LLS--QNFDD 359
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D T +
Sbjct: 3 VTITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ K+ E +FVVVM+TK
Sbjct: 63 DYKIDEKNFVVVMVTKT 79
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 127/444 (28%), Positives = 195/444 (43%), Gaps = 93/444 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V +D + DVKK I P +Q LI G +LKD +
Sbjct: 1 MKIKVRTLQNNEEEINVDNDDTILDVKKKIGVAFPE--MPYDKQKLIFSGNILKDESKAM 58
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ--IRPKLQVLRLLPRHNQRLHLRLLHQ 118
+ + EN V+VM K I Q + + I+ + L P +Q +
Sbjct: 59 D-ILKENDIVIVMACKKIFSSTKNNQTKESSSKDVIKSNEKASSLPPNCDQNNATSNAPE 117
Query: 119 LWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMG 178
N SLN A S LV G L+ T+ I MG
Sbjct: 118 -EGTENRSLN---------------------------SAESALVTGEKLKETIDNICAMG 149
Query: 179 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT---------------------AVPP 217
++RETV +A+ A+NNP RA++YL +G PE++ A+P
Sbjct: 150 ---FERETVKKAMMMAFNNPNRAIDYLTNGFPEESQVNEINAINTITGMNEMNPLNAMPD 206
Query: 218 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAG---AGT 271
V + + + ++ AP+ P L N S N+G A T
Sbjct: 207 VNETNETNETNETNDNSYEREDNENAPS----------LPNLLNNYNSLADNSGQSVADT 256
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI------- 324
D R+S F LR + +NPQ + +L+ +G+ +P + I+E+Q +F+R I
Sbjct: 257 PDQFRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAIQNYGNND 316
Query: 325 ------NEPVEGGEGNVLGQLASAMPQA----VTVTP---EEREAIERLEAMGFDRALVL 371
N+ +EG E G L P + +TP E E+I++LE++GF + L L
Sbjct: 317 HVGSSENDLMEGEEFADPGNLNITDPNNENFQIPITPLNENEMESIKKLESLGFPKHLAL 376
Query: 372 EVFFACNKNEELAANYLLDHMHEF 395
E F AC+KNEE+AANYL ++M+++
Sbjct: 377 EAFIACDKNEEMAANYLFENMNDY 400
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 134/448 (29%), Positives = 200/448 (44%), Gaps = 88/448 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
V E F+VVMLT+ QL + KL L R +
Sbjct: 60 SYNVDEKKFIVVMLTR----DSSSSNPNQLGVKESDKLTSTDNLKDSMPREESNHSNSPP 115
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
N S +LL + L+ +L S + +A SNL+ G TV +++MG
Sbjct: 116 VTRN-SEESILLSETTPISTDNLIGELAQAS-LQSRAESNLLMGDEYNQTVLSMVEMG-- 171
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVARASAGGQAGNPPAQTQAQQP 239
+ RE V RA+ A+YNNPERAVEYL +GIP E+ + S + + ++P
Sbjct: 172 -YPREQVERAMAASYNNPERAVEYLINGIPAEEGTIDNDVNESTNPNGPQTGSASSVERP 230
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
S N++P + FLR+ QF +R+++ NP +L +L
Sbjct: 231 ------SESNSDPFE-------------------FLRSQPQFLQMRSLIYQNPHLLHAVL 265
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVE---------------------GGEGNVL-G 337
Q++G+ NP L++LI E+Q FL ++N+P+E N+
Sbjct: 266 QQIGQTNPALLQLISENQDAFLNMLNQPIERESESSATVPRVSSARTHSTLANVNNLFSS 325
Query: 338 QLASAMPQAVTV---------TPEEREAIE-------------------RLEAMGFDRAL 369
L +A + TV + E E +E RL+A+GF AL
Sbjct: 326 DLEAASAERSTVATSAAQQSGSAAENEDLEQPLGVSTIRLNRQDQDAIERLKALGFPEAL 385
Query: 370 VLEVFFACNKNEELAANYLLDHMHEFED 397
VL+ +FAC KNEELAAN+LL F+D
Sbjct: 386 VLQAYFACEKNEELAANFLLS--SSFDD 411
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 133/261 (50%), Gaps = 63/261 (24%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
V GQA S L+ G + V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 134 VGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 272
P Q +AQ+ + G L
Sbjct: 191 LF------------EDLPEDQLEAQEQL------------------------QDHGQHPL 214
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 332
FLR QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEP GG
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEP--GGR 272
Query: 333 GNVLGQLASAMPQA----------------------VTVTPEEREAIERLEAMGFDRALV 370
+ P A + VTP+++EAIERL+A+GF LV
Sbjct: 273 TTPVSAANVTPPTAPGGISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLV 332
Query: 371 LEVFFACNKNEELAANYLLDH 391
++ +FAC KNE LAAN+LL
Sbjct: 333 VQAYFACEKNENLAANFLLSQ 353
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKV 77
E + E F+VVM+TK+
Sbjct: 58 EYNIDEKKFIVVMVTKL 74
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 129/261 (49%), Gaps = 68/261 (26%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPP 217
S L+ G + V I+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP
Sbjct: 136 SALLMGEDYNTMVNNIMDMG---YEREQVVQALRASFNNPDRAVEYLITGIPAQLFEDPP 192
Query: 218 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 277
A Q Q Q+Q P A FLR
Sbjct: 193 EDPPEAQEQ-----LQDQSQDPLA--------------------------------FLRL 215
Query: 278 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 337
QFQ +R ++Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEP E G
Sbjct: 216 QPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQETFVRMLNEPAEPTTGTGAR 275
Query: 338 QLASAMPQA---------------------------VTVTPEEREAIERLEAMGFDRALV 370
L S + +TP++REAIERL+A+GF LV
Sbjct: 276 VLPSGGGVGPAAAATAGGAVNGGPGAGAATGVGSGLIQITPQDREAIERLKALGFPEHLV 335
Query: 371 LEVFFACNKNEELAANYLLDH 391
++ +FAC KNE LAAN+LL
Sbjct: 336 VQAYFACEKNENLAANFLLSQ 356
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSLQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLA 57
Query: 61 ENKVAENSFVVVMLTK 76
E + E F+VVM+TK
Sbjct: 58 EYNIDEKKFIVVMVTK 73
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 133/266 (50%), Gaps = 66/266 (24%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
V GQA S L+ G + V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 135 VGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 191
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 272
P Q +AQ+ + G L
Sbjct: 192 LF------------EDLPEDQLEAQEQL------------------------QDHGQHPL 215
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-- 330
FLR QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 216 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTG 275
Query: 331 ---------GEGNVLGQLA----------------SAMPQAVTVTPEEREAIERLEAMGF 365
NV A + VTP+++EAIERL+A+GF
Sbjct: 276 GTGGRTTPVSAANVTPPTAPGGISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGF 335
Query: 366 DRALVLEVFFACNKNEELAANYLLDH 391
LV++ +FAC KNE LAAN+LL
Sbjct: 336 PEHLVVQAYFACEKNENLAANFLLSQ 361
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKV 77
E + E F+VVM+TK+
Sbjct: 58 EYNIDEKKFIVVMVTKL 74
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 133/266 (50%), Gaps = 66/266 (24%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
V GQA S L+ G + V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 134 VGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 272
P Q +AQ+ + G L
Sbjct: 191 LF------------EDLPEDQLEAQE------------------------QLQDHGQHPL 214
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-- 330
FLR QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTG 274
Query: 331 ---------GEGNVLGQLA----------------SAMPQAVTVTPEEREAIERLEAMGF 365
NV A + VTP+++EAIERL+A+GF
Sbjct: 275 GTGGRTTPVSAANVTPPTAPGGISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGF 334
Query: 366 DRALVLEVFFACNKNEELAANYLLDH 391
LV++ +FAC KNE LAAN+LL
Sbjct: 335 PEHLVVQAYFACEKNENLAANFLLSQ 360
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKV 77
E + E F+VVM+TK+
Sbjct: 58 EYNIDEKKFIVVMVTKL 74
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 131/255 (51%), Gaps = 60/255 (23%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
V GQA S L+ G + V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 134 VGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 272
P Q +AQ+ + G L
Sbjct: 191 LF------------EDLPEDQLEAQEQL------------------------QDHGQHPL 214
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 332
FLR QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEP
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEP----- 269
Query: 333 GNVLGQLA----------------SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
NV A + VTP+++EAIERL+A+GF LV++ +FA
Sbjct: 270 ANVTPPTAPGGISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFA 329
Query: 377 CNKNEELAANYLLDH 391
C KNE LAAN+LL
Sbjct: 330 CEKNENLAANFLLSQ 344
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKV 77
E + E F+VVM+TK+
Sbjct: 58 EYNIDEKKFIVVMVTKL 74
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 131/262 (50%), Gaps = 69/262 (26%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPP 217
S L+ G + V I+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP
Sbjct: 151 SALLMGEDYNTMVNNIMDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPP 207
Query: 218 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 277
A Q Q Q+Q P A FLR
Sbjct: 208 EDPPEAQEQ-----LQDQSQDPLA--------------------------------FLRL 230
Query: 278 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 337
QFQ +R ++Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEPVE G
Sbjct: 231 QPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPAAGTGAR 290
Query: 338 QLASAMPQA----------------------------VTVTPEEREAIERLEAMGFDRAL 369
L ++ + +TP++R+AIERL+A+GF L
Sbjct: 291 VLPASGGGVAPATAAAVGGAVNGGAGTGAAAGVGSGLIQITPQDRDAIERLKALGFPEHL 350
Query: 370 VLEVFFACNKNEELAANYLLDH 391
V++ +FAC KNE LAAN+LL
Sbjct: 351 VVQAYFACEKNENLAANFLLSQ 372
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ V+ G F IE+ V D+K+ IE +G +PA Q LI+ GK+L D L E
Sbjct: 18 LIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG---FPAEHQKLIYAGKILADEQPLTEY 74
Query: 63 KVAENSFVVVMLTK 76
+ E F+VVM+TK
Sbjct: 75 NIDEKKFIVVMVTK 88
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 43/284 (15%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
+ + G + GSNL+ T+ +I++ G + RE V +A+RAA+NNP+RAVEYL +
Sbjct: 128 SAATPASGTQDPGFLVGSNLQKTIDEIVN--GMGFPREQVTKAMRAAFNNPDRAVEYLMT 185
Query: 208 GIPE--QTAVPPVARASAGGQAGN---------------------PPAQTQAQQPAAPAP 244
GIP PPV + N A+ AQQ P
Sbjct: 186 GIPAGLDAPAPPVTLPTNAPSTVNPSATTPSAAAAPAAGSRNLFEAAAEHVAQQ-RQPGE 244
Query: 245 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGK 304
+ P A P Q +P + L+ LRN+ Q LR +VQ NP +LQP LQ+LG+
Sbjct: 245 AALPTAEPAQAGAQSIPT------SRALEALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQ 298
Query: 305 QNPHLMRLIQEHQTDFLRLINEPVEGGEGN----------VLGQLASAMPQAVTVTPEER 354
NP+L+ + + T + + E EG + + Q V V+ EER
Sbjct: 299 SNPNLLTQLTSNPTLLMSFLAEGAEGLDDDSSLPPGMMGGAGAGGPEDQTQYVQVSQEER 358
Query: 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH-MHEFED 397
+AIERL +GF+R LV++ +FAC+KNEE+AANYL++H +FE+
Sbjct: 359 DAIERLVGLGFERQLVVQAYFACDKNEEMAANYLIEHGFDDFEE 402
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ V E F VVML K
Sbjct: 58 QIGVKEKDFFVVMLIK 73
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 135/264 (51%), Gaps = 66/264 (25%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
V GQA S L+ G + V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 134 VGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 272
P Q +AQ+ + G L
Sbjct: 191 LF------------EDLPEDQLEAQEQL------------------------QDHGQHPL 214
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 332
FLR QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTG 274
Query: 333 GNVLGQL---ASAMPQA------------------------VTVTPEEREAIERLEAMGF 365
G AS + A + VTP+++EAIERL+A+GF
Sbjct: 275 GTGGRTTPVSASTVTPATAPGGISGGLGAGIGTGSDVETSVIQVTPQDKEAIERLKALGF 334
Query: 366 DRALVLEVFFACNKNEELAANYLL 389
LV++ +FAC KNE LAAN+LL
Sbjct: 335 PEHLVVQAYFACEKNENLAANFLL 358
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IE +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIEIQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKV 77
E + E F+VVM+TK+
Sbjct: 58 EYNIDEKKFIVVMVTKL 74
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 93/164 (56%), Gaps = 5/164 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D +S VKKNIETVQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKVAENSF+V+ML+K G P+ P + +
Sbjct: 61 ENKVAENSFIVIMLSKSKPASGKGSTTSNAPPAKAPQTSA---APTSTPPVSVSPQAPAA 117
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAG 164
+ + S DVYGQAASNLVAG
Sbjct: 118 TAAPPASVAAPSPAPAPAPISSATATEGS--DVYGQAASNLVAG 159
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 179/403 (44%), Gaps = 97/403 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLK E++V+ V V + IE + + PA Q LIH GK+LK ++
Sbjct: 1 MKLTVKTLKNVQVEVQVQETSTVEAVMEQIEQLLPN--MPAKTQKLIHSGKILKREMQIK 58
Query: 61 EN-KVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQL 119
+ + + V+V+ +KV+ P + ++ ++ V + P ++ +
Sbjct: 59 DYPDIKDGDKVIVIASKVVESSAPQP-VAKVEEKTPESTPVQQEAPEKSEPV-------- 109
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
Y +S L+ G L+ V +I +MG
Sbjct: 110 ----------------------------------YDNPSSKLLIGQELQDNVNRICEMG- 134
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQTQAQQ 238
++R V RA+ AA+NNPERAVE+L +G IPE
Sbjct: 135 --FERAMVERAMAAAFNNPERAVEFLSTGHIPE--------------------------- 165
Query: 239 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPM 298
P A +DL + L++ F+ LR +VQ++PQ+LQ +
Sbjct: 166 ---------PEAMGMDLPSMEHSGDMPRTNEDVIQMLQSHPMFEQLRQVVQSDPQMLQQL 216
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL--------ASAMPQAVTVT 350
L +G+ NP L++ I EHQ +F+ LI+ G E G P +++T
Sbjct: 217 LDNIGRNNPELLQSIIEHQDEFMDLIS---SGAEVEPFGMPLERPDSVNDENNPNIISLT 273
Query: 351 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 393
E E+++RLEA+GF R V+E F AC+KNE+LAANYLL+H
Sbjct: 274 ESEMESVQRLEALGFPRPAVIEAFLACDKNEQLAANYLLEHFE 316
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 126/236 (53%), Gaps = 65/236 (27%)
Query: 162 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 221
V G+ E V ++ MG ++R+ V+ ALRA++NNP+RAVEYL +G+P
Sbjct: 133 VTGTAYETMVTSMMSMG---FERDQVVAALRASFNNPDRAVEYLLTGLP----------- 178
Query: 222 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 281
PA P L+FLR+ QF
Sbjct: 179 -----------------PAMENP---------------------------LEFLRDQPQF 194
Query: 282 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN------V 335
+R ++++NP +L +LQ LG+ NP L++ I +HQ +F+ ++NEPVEG G V
Sbjct: 195 NNMRQLIRSNPTLLSALLQNLGQSNPQLLQHINDHQQEFIEMLNEPVEGEGGAAGSGPPV 254
Query: 336 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+ QL + + VTP+E+EAIERL+A+GFD LV++ +FAC+KNE LAAN+LL
Sbjct: 255 MEQLPTGQ-NVIPVTPQEKEAIERLKALGFDEGLVIQAYFACDKNENLAANFLLSQ 309
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V KTL+ F+IE++ V +K+ +E +G + +PA+ LI+ GK+L+D L
Sbjct: 1 MQVTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLS 60
Query: 61 ENKVAENSFVVVMLTK 76
+ K+ E +FVVVM+TK
Sbjct: 61 QYKIDEKNFVVVMVTK 76
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 128/231 (55%), Gaps = 42/231 (18%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
+ ++DMG + R+ V A+RAAYNNPERAVEYL +GIP+ G +A +
Sbjct: 161 INNMVDMG---YPRDQVEAAMRAAYNNPERAVEYLLTGIPDHVI---------GEEADDD 208
Query: 231 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG----AGTLDFLRNSQQFQALRT 286
P S + DLF + + G A LDFLR++ QF +R
Sbjct: 209 ------------VPESNTDT---DLFAEAVAQQGQGASVAPNTSALDFLRDNPQFIEMRR 253
Query: 287 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 346
MVQ P +L+P++Q+L NP L LI ++ FL L+ E L + + +P+
Sbjct: 254 MVQQQPHLLEPLIQQLAASNPQLAALITQNSEAFLHLLGE--------GLEEGSGGVPEG 305
Query: 347 VT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
T VTPEE +AIERL A+GF+R LV++ +FAC+KNEE+ ANYLL+H ++
Sbjct: 306 TTEIQVTPEESDAIERLAALGFERNLVIQAYFACDKNEEVTANYLLEHGYD 356
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVK-KNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M V ++ K + ++V+P D V +K KN E G D Y Q +I+ GK+L + T++
Sbjct: 1 MLVKLRDTKRQQWTVDVEPSDTVETLKTKNAE---GKD-YGVGDQKMIYSGKILANTTSI 56
Query: 60 EENKVAENSFVVVMLT 75
E + E++F++ M++
Sbjct: 57 ESLNLKEDAFIICMIS 72
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 137/287 (47%), Gaps = 62/287 (21%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
SVS A S L+ G + VQ I+DMG + R+ V RALRA++NNP+RAVEYL +G
Sbjct: 119 SVSTGLLAAESALIVGDDYNQMVQNIMDMG---YPRDQVERALRASFNNPDRAVEYLLTG 175
Query: 209 IPEQTAVPPVARASAG------------GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 256
IP++ V A G G G A + P +PL
Sbjct: 176 IPDRADVGEGAPGGGGQGPDEAALEFILGGRGQSEAALSMEGEGEEGDELAPGEDPLA-- 233
Query: 257 PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 316
FLR+ QF +R +VQ NP +L +LQ++G+ NP L+++I ++
Sbjct: 234 -----------------FLRSQPQFAQMRQVVQQNPSLLNAILQQIGQTNPALLQMISQN 276
Query: 317 QTDFLRLINEPVEGGEGNVLGQLASAM--------------------------PQAVTVT 350
Q F R++ EP G G+ AS P + VT
Sbjct: 277 QAAFFRMLTEPSSGTAGSASVTPASGAQPGTGSGRAAESPRQGQEEGAGDYFAPGVIHVT 336
Query: 351 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
P+++EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 337 PQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLLS--QNFDD 381
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KTL+ T F+IE+ P V +K+ IE +G D YPA Q LI+ GK+L DV+ L
Sbjct: 1 MLVTFKTLQNTTFQIEIDPSSTVKTLKEKIEKEKGVD-YPAVGQKLIYAGKILDDVSVLS 59
Query: 61 ENKVAENSFVVVMLTK 76
E+ + E F+V+M+TK
Sbjct: 60 EHGIDEKKFIVIMVTK 75
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 143/284 (50%), Gaps = 43/284 (15%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
+ + G + GSNL+ T+ +I++ G + RE V +A+RAA+NNP+RAVEYL +
Sbjct: 128 SAATPASGTQDPGFLVGSNLQKTIDEIVN--GMGFPREQVTKAMRAAFNNPDRAVEYLMT 185
Query: 208 GIPEQTAVP--PVARASAGGQAGN---------------------PPAQTQAQQPAAPAP 244
GIP P PV + N A+ AQQ P
Sbjct: 186 GIPAGLDAPAAPVTLPTNAPSTVNPSATTPSAAAAPAAGSRNLFEAAAEHVAQQ-RQPGE 244
Query: 245 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGK 304
+ P A P Q +P + L+ LRN+ Q LR +VQ NP +LQP LQ+LG+
Sbjct: 245 AALPTAEPAQAGAQSIPT------SRALEALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQ 298
Query: 305 QNPHLMRLIQEHQTDFLRLINEPVEGGEGN----------VLGQLASAMPQAVTVTPEER 354
NP+L+ + + T + + E EG + + Q V V+ EER
Sbjct: 299 SNPNLLTQLTSNPTLLMSFLAEGAEGLDDDPSLPPGMMGGAGAGGPEDQTQYVQVSQEER 358
Query: 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH-MHEFED 397
+AIERL +GF+R LV++ +FAC+KNEE+AANYL++H +FE+
Sbjct: 359 DAIERLVGLGFERQLVVQAYFACDKNEEMAANYLIEHGFDDFEE 402
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ V E F VVML K
Sbjct: 58 QIGVKEKDFFVVMLIK 73
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 115/207 (55%), Gaps = 38/207 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG +F+++V P + V +VKK IE QG ++P +QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNYFDLDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+NKV EN F VVML+K + G + +R V + L +H+ + H
Sbjct: 61 DNKVLENEFFVVMLSKTSNILKQGL----CNLSMRAFFCV-KYLNQHSG-IGKGTAHFQS 114
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
R+ NL VAG NLE+ Q+ILD+GGG
Sbjct: 115 SRNVCCFNL--------------------------------VAGINLESKAQEILDIGGG 142
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYS 207
SWD +TV+ ALRAA NN ERA+EYL S
Sbjct: 143 SWDFDTVVHALRAASNNVERALEYLSS 169
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 134/241 (55%), Gaps = 28/241 (11%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S+ V G L+ ++Q +++MG ++R+ V+RALRA++NNP+RAVEYL++GIP
Sbjct: 148 SSFVTGDALQQSIQNMIEMG---FERDQVMRALRASFNNPDRAVEYLFNGIPAHLEA--- 201
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 278
A A N Q QQ +G G P M G L L+N+
Sbjct: 202 TAAGTPAPAPNLFQLAQQQQQQQQQQATG-----------GFPGM---PGGVDLAALQNN 247
Query: 279 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 338
QFQ LR ++ NP ++QP++Q+L NP +L+ ++ L + GEG+ G
Sbjct: 248 PQFQQLRQVIAQNPALVQPLIQQLAGANPQFAQLLAQNPEALLTALGL----GEGDFEGD 303
Query: 339 LASAMP--QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+ P + +TPEE+EAI+RLEA+GF R V+E +FAC+KNEELAANYL D FE
Sbjct: 304 EGALPPGTHVINITPEEQEAIQRLEALGFPRQAVIEAYFACDKNEELAANYLFD--SGFE 361
Query: 397 D 397
D
Sbjct: 362 D 362
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F I+ + D V+D+K+ I QG V Q +I+ GK+L D T+E
Sbjct: 1 MKLTVKTLQQKVFHIDAEGSDTVADIKQKISESQGHAV---ESQKIIYSGKILPDTKTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
++ E F+V+M++K
Sbjct: 58 SCEIKEKDFLVLMVSK 73
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 134/264 (50%), Gaps = 66/264 (25%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
V GQA L+ G + V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 134 VGGQAEXALLMGEDYNTMVNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQ 190
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 272
P Q +AQ+ + G L
Sbjct: 191 LF------------EDLPEDQLEAQEQL------------------------QDHGQHPL 214
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 332
FLR QFQ +R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 215 AFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTG 274
Query: 333 GNVLGQL---ASAMPQA------------------------VTVTPEEREAIERLEAMGF 365
G AS + A + VTP+++EAIERL+A+GF
Sbjct: 275 GTGGRTTPVSASTVTPATAPGGISGGLGAGIGTGSDVETSVIQVTPQDKEAIERLKALGF 334
Query: 366 DRALVLEVFFACNKNEELAANYLL 389
LV++ +FAC KNE LAAN+LL
Sbjct: 335 PEHLVVQAYFACEKNENLAANFLL 358
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKV 77
E + E F+VVM+TK+
Sbjct: 58 EYNIDEKKFIVVMVTKL 74
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 136/249 (54%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 183 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 233
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QP A AG L+FLR
Sbjct: 234 ----GSPEPEHGSVQESQVSEQPTTEA-----------------------AGENPLEFLR 266
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++ L + I HQ F++++NEP +
Sbjct: 267 DQPQFQNMRQVIQQNPALLPALLQQLGQETLSLPQQISRHQEQFIQMLNEPPGELADISD 326
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 327 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 385
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 386 LS--QNFDD 392
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK
Sbjct: 55 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKA 109
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 84/113 (74%), Gaps = 5/113 (4%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVY QAASNLV+G+NLE +QQILDMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIP
Sbjct: 72 ADVYSQAASNLVSGNNLEQIIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIP 131
Query: 211 EQTAVPPVARASAGGQAGN----PPAQTQAQQPAAPAPTSG-PNANPLDLFPQ 258
PPVA A AGGQ N PAQ P P+ S P+ANPL LFPQ
Sbjct: 132 VNVETPPVAGAPAGGQQTNQQAPSPAQPAVASPVQPSAASARPDANPLILFPQ 184
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 134/241 (55%), Gaps = 26/241 (10%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL +GIP
Sbjct: 189 AASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLTGIP------ 239
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
++ PP + P++ P G + G+ A A L+FLR
Sbjct: 240 --------AESEQPPQEVVRPTPSSNPTPPAPQRAQPPPAAAGAESGGAQASANPLEFLR 291
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ QFQ +R ++Q NP +L + Q+LG+ NP L++ I +HQ F++++N
Sbjct: 292 HQPQFQQMRQIIQQNPSLLPALQQQLGRDNPQLLQQITQHQERFVQMLN-------EPEA 344
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
A+ + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+
Sbjct: 345 EAPAAPQTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQNFD 402
Query: 397 D 397
D
Sbjct: 403 D 403
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 62 EYKIDEKNFVVVMVTK 77
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 142/266 (53%), Gaps = 44/266 (16%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L G A + + MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 135 SALAMGEQRAAAIAGMEAMG---FARDQIDAAMRAAFFNPDRAVEYLLNGIPESARQEQR 191
Query: 219 ARASAGGQAGNPPAQTQAQQPA--APAPTSGPNAN--PLDLFPQGLPNMGSNAG------ 268
A A++ A TQ QQPA A A T+ A+ P++LF G G
Sbjct: 192 AAAASPQPA-----PTQGQQPADTAGAETTQQQASDEPVNLFEAAAQAGGGGRGGAGGRG 246
Query: 269 --------------------AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 308
+ LDFLRN+ QFQ LRT+VQ PQ+L+P+LQ + NP
Sbjct: 247 AGDLGALGGGRGGAQGGQTESSQLDFLRNNPQFQQLRTVVQQQPQMLEPILQSVAAGNPQ 306
Query: 309 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 368
L ++I +H F++L+ E + G+ + A Q ++VT EER+AIERL +GFDR
Sbjct: 307 LAQIITQHPEQFMQLLAE--DAGDDVAIPPGA----QEISVTAEERDAIERLCRLGFDRD 360
Query: 369 LVLEVFFACNKNEELAANYLLDHMHE 394
LV++ +FAC+KNEELAAN+L D E
Sbjct: 361 LVVQAYFACDKNEELAANFLFDQPDE 386
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + VK I +G D S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSETIGAVKGKISAEKGWD---PSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+V M +K
Sbjct: 58 SYKIEEKGFIVCMTSK 73
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 125/235 (53%), Gaps = 33/235 (14%)
Query: 158 ASNLVAGSN--LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
AS + SN E T+Q I+DMG ++R V ALRA++NNP+RAVEYL +GIP++
Sbjct: 137 ASEPESASNDETERTIQNIMDMG---YERPQVEEALRASFNNPDRAVEYLLTGIPQELLT 193
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
PT PN + L L L FL
Sbjct: 194 ---------------------------DPTISPNRSVLSEDSGDLSGSSQVPATDPLAFL 226
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGN 334
RN FQ +RT+VQ NP++L +LQ++G+ NP L+++I +Q F+R++NEP EG
Sbjct: 227 RNQPTFQQMRTVVQQNPELLNSVLQQIGQTNPALLQMISNNQEAFVRMLNEPNEGAAAAP 286
Query: 335 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
A V V+ +++EAI+RL+A+GF V++ +FAC KNE +AAN LL
Sbjct: 287 AAASRGPADGFEVPVSTQDKEAIDRLKALGFPEHQVVQAYFACEKNENMAANLLL 341
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K L+ F++E+ + V +K+ ++ +GS+ Y A Q LI+ GK+L D T +
Sbjct: 1 MLITFKNLQQHTFKLEIDSDQTVRQLKEKLQAEKGSE-YLAENQKLIYAGKILSDDTKIS 59
Query: 61 ENKVAENSFVVVMLTK 76
+ + FVVVM++K
Sbjct: 60 DCNIDSKKFVVVMVSK 75
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV EN+F+V+ML+K
Sbjct: 61 ENKVVENTFIVIMLSK 76
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 56/239 (23%)
Query: 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 225
+ E+TVQ I+DMG ++R+ V +ALRA++NN ERAVEYL +GIPE+ A SA
Sbjct: 134 DFESTVQSIMDMG---YNRQQVEQALRASFNNRERAVEYLITGIPEELLQEQEAEESA-- 188
Query: 226 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 285
D P G FLR+ QFQ +R
Sbjct: 189 ----------------------------DEDPLG--------------FLRDQPQFQQMR 206
Query: 286 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA---SA 342
++Q NP +L +LQ++G+ NP L++ I +HQ F+R++NEPV + + A +
Sbjct: 207 AVIQQNPNLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPSAAGAVAEEAVPDNP 266
Query: 343 MPQ----AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+PQ + V+P+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 267 VPQQPQNVIQVSPQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS--QNFDD 323
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ P++ V +K IE +G D Y A Q LI+ GK+L D L
Sbjct: 1 MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKD-YAADNQRLIYAGKILLDDNKLH 59
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V+M+TK
Sbjct: 60 TYNIDEKKFIVIMVTK 75
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 136/253 (53%), Gaps = 37/253 (14%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 217
AS +GS E +Q I+ MG ++R V +AL AA+NNP+RAVEYL SGIP++TA PP
Sbjct: 118 ASTFASGSVRETAIQNIMAMG---FERPQVEQALTAAFNNPDRAVEYLLSGIPQRTAEPP 174
Query: 218 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 277
A Q+G P QT+ QPAA + P NP +LF + GS D +
Sbjct: 175 AA-----AQSGEP--QTE-DQPAAEDTNASP--NPDNLF-EAAAAAGSQ--GQDADQQQE 221
Query: 278 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 337
+LR ++Q P++ + +LQ+L NP L ++Q + F+R I + G+ N L
Sbjct: 222 GDFMGSLREILQQQPEMAEAVLQQLAASNPQLAEIVQSNPEAFMRYITD----GDQNALA 277
Query: 338 QL-------------ASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
Q +P+ T +T EE EAI RL +GF+R LV++V+FAC+KNE
Sbjct: 278 QALGVPPEYMEGVEGEGELPEGATRIQITQEENEAINRLCELGFERDLVIQVYFACDKNE 337
Query: 382 ELAANYLL-DHMH 393
E+ AN L DH
Sbjct: 338 EMTANLLFSDHAE 350
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + +++ + ASQ ++ GKVL+D T E
Sbjct: 1 MQVIFKDFKKEKIPLEVELSDSVLSAKEKLASLKECE---ASQVKFVYSGKVLQDDKTFE 57
Query: 61 ENKVAENSFVVVMLT 75
K+ EN V+ M++
Sbjct: 58 NFKIKENDQVIFMIS 72
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 135 bits (341), Expect = 3e-29, Method: Composition-based stats.
Identities = 92/241 (38%), Positives = 141/241 (58%), Gaps = 26/241 (10%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
++LV G + ++ +++MG ++R V A+RAA+NNP+RAVEYL +GIPE + +
Sbjct: 1163 NSLVVGLLCDTAIKNMMEMG---YERTQVENAMRAAFNNPDRAVEYLLTGIPEHLSRELL 1219
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQ-------------GLPNMGS 265
++S+ Q Q+ + P T + N +L Q G MGS
Sbjct: 1220 QQSSSSQQVSRAQQIVQSTPTSTPTSTPSRSENLFELAAQVSQQGRERLNTSSGNSLMGS 1279
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
N A +L FLRN+ QF LR +VQ PQ+L+ +LQ+LG+ N L LI ++ FL+L++
Sbjct: 1280 N-NAESLAFLRNNPQFLMLRRLVQTQPQMLESVLQQLGQGNLQLATLINQNSDAFLQLLS 1338
Query: 326 EPVEGGEGNVLGQLASAMPQAV--TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
E +E G+G +AMP V +T EER+AIERLEA+GF +V++ +FAC+KNEE+
Sbjct: 1339 EGME-GDG------TAAMPNIVQLQLTEEERQAIERLEALGFSHGVVVQAYFACDKNEEV 1391
Query: 384 A 384
+
Sbjct: 1392 S 1392
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ K LK F I+ V P + VK+ I+ VQG D+ Q LI+ GK+L D T+
Sbjct: 1040 MKLTFKDLKQQKFTIDNVDPRCTILQVKEMIQEVQGHDL---KHQKLIYSGKILLDSNTV 1096
Query: 60 EENKVAENSFVVVMLTK 76
E + E F+V M+ K
Sbjct: 1097 ESYDIKEKDFIVCMVQK 1113
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 47/233 (20%)
Query: 173 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 232
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 4 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQE 50
Query: 233 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 292
++QPA A AG L+FLR+ QFQ +R ++Q NP
Sbjct: 51 SQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNP 87
Query: 293 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA 346
+L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 88 ALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQM 146
Query: 347 --VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 147 NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 197
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 130/234 (55%), Gaps = 45/234 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ +QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQAPEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC K ++
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKKKK 349
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKV 77
+ E +FVVVM+TK
Sbjct: 65 HIDEKNFVVVMVTKA 79
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 141/274 (51%), Gaps = 36/274 (13%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-T 213
G + GS L+ T+ +I++ G + RE V++A+RAA+NNP+RAVEYL +GIP
Sbjct: 140 GTQDPGFLTGSGLQTTIDEIVN--GMGFPREEVVKAMRAAFNNPDRAVEYLMTGIPAGLD 197
Query: 214 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA------ 267
A+PP A AG A PAP + P +LF ++
Sbjct: 198 ALPPSAAPRAGAPTPATATAPTPGANAVPAPVA-PTTASRNLFEAAAQHVAQQRQPAAAA 256
Query: 268 ---------------GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 312
+ L+ LRN+ Q LR +VQ NPQ+LQP +Q+LG+ NP L+
Sbjct: 257 TPAAAPAGAAGATANTSRVLESLRNNPQMVQLRQLVQTNPQLLQPFMQQLGQSNPALLAQ 316
Query: 313 IQEHQTDFLRLINEPVE--GGEG-------NVLGQLASAMPQAVTVTPEEREAIERLEAM 363
+ + + ++E + G G LG Q V VTPEE+EAI+RL M
Sbjct: 317 LSANPELLMGFLSEGADQAGDFGMDEGGFPPGLGGGDGTGAQYVQVTPEEQEAIDRLVGM 376
Query: 364 GFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
GF+R L ++ +FAC+KNEE+AANYL++ H FED
Sbjct: 377 GFERQLAIQAYFACDKNEEMAANYLVE--HGFED 408
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P ++++K I+ QG + Q +I GK+L D +
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSITIANLKLQIKESQG---FEPELQKIIFSGKILSDEKLIS 57
Query: 61 ENKVAENSFVVVMLTK 76
+ +V E F V+ML K
Sbjct: 58 DIEVKEKDFFVIMLMK 73
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 134/251 (53%), Gaps = 26/251 (10%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPP-- 217
+ G+ LEA++ +++ MG + RE RA+RA+YNNP RAVEYL +GIP E PP
Sbjct: 186 FLTGARLEASIAEMVSMG---FPREDCQRAMRASYNNPHRAVEYLMNGIPAEAQTAPPRA 242
Query: 218 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG----------------LP 261
V A+ G T+ A + P++LF
Sbjct: 243 VPAATTGATPAAATTTTETAATPAAPVPAPTTGQPMNLFDAARQAAQNPAPAAATGGAAR 302
Query: 262 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
+ AG LD LR F+ LRT+VQ NP +LQP LQ+L + NP L+ +IQ++Q FL
Sbjct: 303 PGATEAG---LDALRREPAFEQLRTLVQQNPALLQPFLQQLAQTNPRLLGIIQQNQEAFL 359
Query: 322 RLINEPVEG-GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 380
+ + E EG G+ G Q V V+ +E +AI+RL +GFDR V++ F AC++N
Sbjct: 360 QFLGEGAEGEGDFGFEGDDGQEGMQHVQVSADEAQAIDRLCELGFDRQNVIQAFLACDRN 419
Query: 381 EELAANYLLDH 391
EE+AAN+L ++
Sbjct: 420 EEMAANFLFEN 430
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++V +K L+ F +E++P + D+K+ IE+ QG V + Q +I GKVL D T+
Sbjct: 31 VRVTLKNLQQKTFTLELEPSQTILDLKQKIESDQGHAV---ALQKIIFSGKVLADDKTIG 87
Query: 61 ENKVAENSFVVVMLTK 76
+ + E F+V+M+ K
Sbjct: 88 DCNIKEKDFMVLMVNK 103
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 121/228 (53%), Gaps = 41/228 (17%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E T Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG
Sbjct: 149 EETAQAIVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH- 196
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 287
Q A+ G A LDFLR QF+ LR +
Sbjct: 197 -----QESAEH-----------------------EEGERAQGLGLDFLRQLPQFEQLREL 228
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ-A 346
VQ+NP IL ++Q++ + NP LM IQ +Q +F+ L+N G + A Q A
Sbjct: 229 VQSNPAILPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVSSGGGGVAPSAGEQRQVA 288
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
+ VT ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 289 IHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 336
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 23 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 82
Query: 61 ENKVAENSFVVVMLTK 76
E + + FVVVM+ +
Sbjct: 83 EVMIDPSKFVVVMIAR 98
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 142/294 (48%), Gaps = 79/294 (26%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
+A S+L+ G TV +++MG + RE V RA+ A++NNPERAVEYL +GIP +
Sbjct: 154 RAESSLLMGEEYNRTVSSMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPAE--- 207
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
+ Q P S PN D P+ S A +FL
Sbjct: 208 -----------------EDQLFNDTDPTSQSNPNPRVADASSINAPSGRSTADP--FEFL 248
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----- 330
R+ QF +R+++ NPQ+L +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 249 RSQPQFLQMRSLIYQNPQLLDAVLQQIGQTNPALLQLISENQDAFLNMLNQPLEGESSAR 308
Query: 331 ----GEG------NVLGQLASAMPQAVT-------------------------------- 348
EG V Q ++A Q T
Sbjct: 309 GTARSEGLASGLLEVAAQRSAAGAQETTSAARASVPGSPSATEGGASERETAEQQQLAEG 368
Query: 349 -----VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ P++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 369 VATIRLNPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 420
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++KK I +G++ P +Q LI+ G +L D +
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLP-EKQKLIYAGVILVDDRKIS 59
Query: 61 ENKVAENSFVVVMLTK 76
KV E F+VVMLT+
Sbjct: 60 SYKVDEKKFIVVMLTR 75
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
A1163]
Length = 376
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 146/261 (55%), Gaps = 46/261 (17%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L++GS EA + Q+ MG + R + RA+RAA+ NP+RA+EYL +GIP+
Sbjct: 139 SALLSGSQSEAVISQMESMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPDNIQQEQQ 195
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------- 270
+A+A A P A + AP+S P++LF + AG G
Sbjct: 196 QQAAAAAAAPRPSAPS-----GESAPSSTGGDEPVNLF-----EAAAQAGTGEGTGRGAR 245
Query: 271 -----------TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 319
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++
Sbjct: 246 AGAVGAGEGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQ 305
Query: 320 FLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
FL+L++E +G A+P A++VT EER+AIERL +GF R LV++ +FA
Sbjct: 306 FLQLLSEEDDG-----------ALPPGTHAISVTEEERDAIERLCRLGFSRDLVIQAYFA 354
Query: 377 CNKNEELAANYLLDHMHEFED 397
C+KNEELAANYL ++ + +D
Sbjct: 355 CDKNEELAANYLFENPDDPDD 375
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 TYNIEEKGFIVCMVSK 73
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 140/276 (50%), Gaps = 74/276 (26%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 79 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 129
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ +QPA A AG L+FLR
Sbjct: 130 ----GSPEPEHGSVQESQVPEQPAVEA-----------------------AGENPLEFLR 162
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 163 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 222
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIER---------------------------LE 361
EG V G + PQ + VTP+E+EAIER L+
Sbjct: 223 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERVRSLAKEPLMVGSPMLPSFLPLPIFPQLK 281
Query: 362 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 282 ALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 315
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 75/293 (25%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
+A SNL+ G TV +++MG + RE V RA+ A+YNNPERAVEYL +GIPE+
Sbjct: 147 SRAESNLLMGEEYNQTVLSMVEMG---YPREEVERAMAASYNNPERAVEYLINGIPEEEG 203
Query: 215 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 274
+ ++ NP Q + + P + D F +F
Sbjct: 204 TID----NGVNESTNPSVIASGPQTVSASSVERPAESNSDPF----------------EF 243
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE----- 329
LR QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 244 LRRQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIERESES 303
Query: 330 -------------GGEGNVLGQLASAMPQA------------------------------ 346
+GNV +S + A
Sbjct: 304 STTVPGVSSAGTHSTQGNVSNLFSSDLGAASAQRSTAGTSAAQQSGSSAEHEDLEQPLGA 363
Query: 347 --VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ + ++++AIERL+A+GF ALVL+ +FAC KNEELAAN+LL F+D
Sbjct: 364 STIRLNRQDQDAIERLKALGFPEALVLQAYFACEKNEELAANFLLS--SSFDD 414
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T++
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVD 59
Query: 61 ENKVAENSFVVVMLTK 76
V + F+VVMLT+
Sbjct: 60 SYNVDDKKFIVVMLTR 75
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/440 (27%), Positives = 196/440 (44%), Gaps = 82/440 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV V+TL+ EI V ED + DVKK IE P +Q LI G +LKD +
Sbjct: 1 MKVKVRTLQNNEEEISVDNEDTILDVKKKIEVAFPE--MPCDKQKLIFSGNILKDESKAV 58
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRL-----LPRHNQRLHLRL 115
+ + EN V+VM K I + Q + VL+ LP ++ + +
Sbjct: 59 D-VLKENDIVIVMACKKI----FSSKNNQTKESSSSSANVLKSKEKTPLPANDDQKNAAP 113
Query: 116 LHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQIL 175
+ +LN A S LV G L+ T+ I
Sbjct: 114 TAAEEGGQSKNLN---------------------------NAESALVTGEKLKETIDNIC 146
Query: 176 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQAGNPPA 232
MG ++RE V +A+ A+NNP RA++YL +G P++ V ++ + + G A
Sbjct: 147 AMG---FEREAVRKAMMVAFNNPNRAIDYLTNGFPDENEVNEISAINTMNGMNEMGAANA 203
Query: 233 QTQAQQPAAPAPTSGPNANPLDLFPQ-------GLPNMGSNAGA----------GTLDFL 275
+ T+ N + + + LPN+ +N A + D
Sbjct: 204 ANAMRDVNETNETNETNETNDNSYEREDNESAPNLPNLLNNYSALADNPRQSVPDSTDQF 263
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI-----NEPVEG 330
R+S F LR + +NPQ + +L+ +G+ +P + I+E+Q +F+R I N+
Sbjct: 264 RSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAIQNYGTNDHTAN 323
Query: 331 GEGNVLG--QLASAMPQAVT----------VTP---EEREAIERLEAMGFDRALVLEVFF 375
E +++ A Q +T +TP E E+I++LE++GF + L LE F
Sbjct: 324 TENDLMAGDAFADQGNQNITDPNNENFNIPITPLNENEMESIKKLESLGFPKHLALEAFI 383
Query: 376 ACNKNEELAANYLLDHMHEF 395
AC+KNEE+AANYL ++M+++
Sbjct: 384 ACDKNEEMAANYLFENMNDY 403
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 135/272 (49%), Gaps = 57/272 (20%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S + G+ L+ T+Q +++MG +DRE V+RALRA+YNNP+RAVEYL +GIP
Sbjct: 145 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIP-------- 193
Query: 219 ARASAGGQAGNPP--AQTQAQQPAAPAPTSGPNANPLDLF-----------------PQG 259
A +A PP + T PAAP S P +N PQ
Sbjct: 194 --AHLEAEAAGPPRTSSTTQSNPAAP---SAPQSNSPAAPAPAPATAPAAAAPPANQPQN 248
Query: 260 LPNMGSN---------------------AGAGTLDFLRNSQQFQALRTMVQANPQILQPM 298
L + GA L L + Q Q LR +V+ NP ++QP+
Sbjct: 249 LFQLAQQQQTGGGGGAAAGMGGMGGMGGMGAPDLAALAANPQIQQLREIVRQNPALIQPL 308
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 358
+Q+L QNP + + + + L+L+ EG E Q ++VT EEREAI
Sbjct: 309 IQQLAAQNPQMAQALAANPDMLLQLLGA-GEGDEEGGPEGEVPPGAQVISVTVEEREAIA 367
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
RLEA+GF R VLE +FAC+KNEELAANYL +
Sbjct: 368 RLEALGFPRHAVLEAYFACDKNEELAANYLFE 399
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKT + F+I+++P D + +K IE+ +PA Q +I+ GK+L D T+E
Sbjct: 1 MKITVKTTQQKVFQIDIEPTDTIGSLKAKIESAHN---HPAPTQKIIYSGKILSDDKTIE 57
Query: 61 ENKVAENSFVVVML 74
V E F V+M+
Sbjct: 58 SCGVKEKDFFVLMV 71
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 136/259 (52%), Gaps = 33/259 (12%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
+V+ V +A S GS EAT+Q I++MG +DR+ V +ALRAA+NNP RAVEYL +G
Sbjct: 110 TVAPVSEEAGSAFAQGSEREATIQNIMEMG---YDRDQVEQALRAAFNNPHRAVEYLLTG 166
Query: 209 IPE--QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
IPE Q V P A A+T TS N N LF ++
Sbjct: 167 IPESLQQPVEPPTAVEEDVDATPVAAETTQDDKDHDHDTSDRNVN---LFEAAAAANNAS 223
Query: 267 AGAGT----LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL- 321
AG G + L ++ Q Q LR +Q NP+++ +L+++ + NPH+ +LIQ+ F+
Sbjct: 224 AGEGDASDPVGELDDAAQLQLLREAIQTNPELIHELLEQISRSNPHIAQLIQQDPEGFIN 283
Query: 322 -----------RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 370
+ +E +E GE + + ++ E++ AI RL +GFDR LV
Sbjct: 284 QFFGAGAEEGFEIDDEAMEEGEDAGV---------RIEISEEDQSAINRLCELGFDRNLV 334
Query: 371 LEVFFACNKNEELAANYLL 389
++V+ AC+KNEE+AA+ L
Sbjct: 335 IQVYMACDKNEEVAADILF 353
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ +D V K+ + + + DV SQ ++ GKVL D +L
Sbjct: 1 MQITFKDFKKQKLTIDVEVDDTVLKTKETVASQKSCDV---SQLKFVYSGKVLADDQSLG 57
Query: 61 ENKVAENSFVVVMLTKVIR 79
K+ E ++ M++K +
Sbjct: 58 SYKIKEGDSIIYMISKAKK 76
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 143/265 (53%), Gaps = 45/265 (16%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 213
S L G EA + + MG + R + RA+RAA+ NP+RAVEYL +GIPE
Sbjct: 133 SALTMGGEREAAIANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 189
Query: 214 ----AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-- 267
A P + AGG AG A QA P+SG + P++LF
Sbjct: 190 QQTQARAPNSPTPAGGNAG---ATAQAN------PSSGGD-EPMNLFEAAAAAQNRGGAG 239
Query: 268 ---------------GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 312
A +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++
Sbjct: 240 GARSGGTGGAGGGALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQM 299
Query: 313 IQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 372
I + FL+L+ E + E L A QA++VT EEREAIERL +GF+R LV++
Sbjct: 300 IASNPEQFLQLLAE--DADEDAPLPPGA----QAISVTEEEREAIERLCRLGFERDLVIQ 353
Query: 373 VFFACNKNEELAANYLLDHMHEFED 397
+FAC+KNEELAAN+L D + +D
Sbjct: 354 AYFACDKNEELAANFLFDQPDDADD 378
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 181/401 (45%), Gaps = 79/401 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VK++ G +FE+E+ V D+KK I V+ DV + +ML K +K +
Sbjct: 1 MKVKVKSIAGDNFEVEIGGSSTVFDLKKAISEVKRYDV---TDEMLRDSSKGMKIIL--- 54
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+ K+ ++S Q + PK+ ++P L + +
Sbjct: 55 QGKILDDS--------------------QTISSLGPKISFFVMMPPEGVTLKKVEVSKPQ 94
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ ++ G + ++ G +LEA+V++I MG
Sbjct: 95 DQPAVT---------------------------SGLQNNTILMGEDLEASVREICGMG-- 125
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
+ V RALR A+NNP+RAVE LY+G + A+ Q Q Q P
Sbjct: 126 -FAESEVRRALRLAFNNPDRAVEILYNGASDD------AQQMQNEQPAEQQQQQQGASPE 178
Query: 241 APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQ 300
AP+ S P +D G AG L+ LR QF +R VQ+ P +L +L
Sbjct: 179 APSHGSMPLRFNMDALAVNASEAG--AGGNQLEMLRRDPQFAFVRHCVQSQPSLLPELLL 236
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV--TPEEREAIE 358
++G+ NP L+ I ++Q +F+R++NEP G P T+ T EE + +E
Sbjct: 237 QIGRVNPSLLATINQNQAEFVRIVNEP---------GMQNPQEPSQHTIQLTREELDQVE 287
Query: 359 RLE----AMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 395
RLE MG DR VLE + AC+K+E+LAANYLL+++ +
Sbjct: 288 RLEQLVVPMGLDRQAVLEAWLACDKDEQLAANYLLNNLEDI 328
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 128/245 (52%), Gaps = 38/245 (15%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
Y +S V GS LE ++ +I +MG ++R V RA+ AA+NNP+RAVE+L +G
Sbjct: 122 TYENVSSKFVMGSELEQSINRICEMG---FERPLVERAMAAAFNNPDRAVEFLSTG---- 174
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 272
N PA ++ PN N +L G AG L
Sbjct: 175 ----------------NIPA------------SNMPNINAQNL---ATAEHGDPAGDDVL 203
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 332
L++ F+ L V+++P +LQ ML+ LG+ NP L++ I + Q +F+ L++
Sbjct: 204 QMLQSHPMFEQLIQAVRSDPNLLQQMLENLGQTNPELLQAIIQRQDEFVELLSSSARAAA 263
Query: 333 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
P +T+TP E E+I+RLE +GF R V+E + AC+KNEELAANYLL++
Sbjct: 264 TADQYSTTENNPNIITLTPVEMESIQRLEGLGFSRPAVIEAYLACDKNEELAANYLLENF 323
Query: 393 HEFED 397
++F++
Sbjct: 324 NDFQE 328
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 140/262 (53%), Gaps = 47/262 (17%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ--TAVP 216
+ L G+ A + ++ MG ++R + A+RAA+ N ERA+EYL +GIPE+
Sbjct: 138 TGLAMGAERSAQIAEMESMG---FERSQIEAAMRAAFYNSERAIEYLLNGIPERLLQEQQ 194
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG------ 270
P A A QA +PPA +G +P+DLF Q N G+ GA
Sbjct: 195 PTPAAPAAVQASSPPA-------------AGGEDDPVDLF-QAAANAGNRGGAARGRPGV 240
Query: 271 ----------------TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 314
LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L LI
Sbjct: 241 DPLGGAGAGAAAGGLGNLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLATLIS 300
Query: 315 EHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 374
+H FL+L++E + G QA+ VTPEER+AIERL +GF+R ++ +
Sbjct: 301 QHPEQFLQLLSENADDDAPLPPGA------QAIEVTPEERDAIERLCRLGFNREQAIQAY 354
Query: 375 FACNKNEELAANYLLDHMHEFE 396
FAC+KNEELAAN+L + + E
Sbjct: 355 FACDKNEELAANFLFEQPEDEE 376
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F +E +P + VSDVK+ I +G + ASQQ LI+ GK+L+D TLE
Sbjct: 1 MKLTFKDLKQQKFVLEAEPTELVSDVKEKIFKEKG---WEASQQKLIYSGKILQDANTLE 57
Query: 61 ENKVAENSFVVVMLT 75
+ E F+V M+T
Sbjct: 58 SYHIEEKGFIVCMIT 72
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 144/260 (55%), Gaps = 33/260 (12%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L G EA + + MG + R + RA+RAA+ NP+RAVEYL +GIPE
Sbjct: 136 SALTMGGEREAAIANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 192
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA--NPLDLF-----------PQGLPNMGS 265
+A A PA A AP + P+ P++LF P G GS
Sbjct: 193 QQAQARAPTSPTPAGNTG---ATAAPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGS 249
Query: 266 NAGA--------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 317
GA +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I ++
Sbjct: 250 APGATGGGALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNP 309
Query: 318 TDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
FL+L+ E + E L A QA++VT +EREAIERL +GF+R LV++ +FAC
Sbjct: 310 EQFLQLLAE--DADEDAPLPPGA----QAISVTEDEREAIERLCRLGFERDLVIQAYFAC 363
Query: 378 NKNEELAANYLLDHMHEFED 397
+KNEELAAN+L D + +D
Sbjct: 364 DKNEELAANFLFDQPDDADD 383
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V +QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQADKGWEV---TQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 139/253 (54%), Gaps = 23/253 (9%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQT 213
G ++S+ V G L+A + +++MG ++ + V+RALRA+YNNP+RAV+YL SG IPE
Sbjct: 130 GLSSSSFVTGPALQAAISSMVEMG---FEHDQVVRALRASYNNPDRAVDYLMSGNIPEVE 186
Query: 214 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPT----------SGPNANPLDLFPQGLPNM 263
P A A A P AAP+ T SG + +LF +
Sbjct: 187 GPAPAATAPPTQTAPTIPTPA-----AAPSQTPAAPAAQPAPSGSAGSAENLFATVARDR 241
Query: 264 GSNAGAG--TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
G++A A +L+ L NS Q Q LR MVQ NP ++ P+LQ++ NP L +LI +H
Sbjct: 242 GTSAPANVPSLEALGNSPQLQRLRQMVQQNPALIGPLLQQVAAHNPALAQLINQHPEAVY 301
Query: 322 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
+ V GGEG L + +T +E EA++RLE +GFDR +VL+ + C+KNE
Sbjct: 302 EWLG--VGGGEGEDDDDLMGPQTMRIDLTQQEAEAVQRLEQLGFDRQVVLQAYLLCDKNE 359
Query: 382 ELAANYLLDHMHE 394
ELAANYL + E
Sbjct: 360 ELAANYLFEQGEE 372
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ +KT++ F +E + + V DVK+ IE S +P QQ +I+ GK+L+D T++
Sbjct: 2 VKITLKTVQNKLFTVEAEEAETVGDVKRKIEE---SQTFPVEQQKIIYSGKILQDDTSIG 58
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+VVM++K
Sbjct: 59 SLKIKEKDFLVVMVSK 74
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 177/383 (46%), Gaps = 61/383 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIK 62
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
E + E +F VV++ + Q P + P+ P +
Sbjct: 63 EYHIDEKNF-VVVMVTKAKAGQGTPAPPEASPTAAPEPSTP-FPPAPASGMSHPPPSNRE 120
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + + + + D AAS LV GS E + +I+ MG
Sbjct: 121 DKSSSEESATTTSPESISGSVPSSGSSGREED----AASTLVTGSEYETMLTEIMSMG-- 174
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQAQQP 239
++RE V+ ALRA+YNNP RAVEYL +GIP G+P P Q+
Sbjct: 175 -YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSVQES 216
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
AP + AG L+FLR+ QFQ +R ++Q NP +L +L
Sbjct: 217 QAPE------------------QPATEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALL 258
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTP 351
Q+LG++NP L++ I HQ F++++NEP + EG V G L PQ + VTP
Sbjct: 259 QQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GALGEEAPQMNYIQVTP 317
Query: 352 EEREAIERLEAM-------GFDR 367
+E+EAIER A G DR
Sbjct: 318 QEKEAIERSPACPKLLARPGSDR 340
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 382
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 144/259 (55%), Gaps = 31/259 (11%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L G EA + + MG + R + RA+RAA+ NP+RAVEYL +GIPE
Sbjct: 134 SALTMGGEREAAIANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 190
Query: 219 ARASAGGQAGNPPA-QTQAQQPAAPAPTSGPNANPLDLF-----------PQGLPNMGSN 266
+A A PA T A A AP+ P++LF P G GS
Sbjct: 191 QQAQARAPTSPTPAGNTGATATPANAPSGA--DEPMNLFEAAAQAANRDRPSGGQRGGSA 248
Query: 267 AGA--------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 318
GA +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I ++
Sbjct: 249 PGATGGAALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPE 308
Query: 319 DFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 378
FL+L+ E + E L A QA++VT +EREAIERL +GF+R LV++ +FAC+
Sbjct: 309 QFLQLLAE--DADEDAPLPPGA----QAISVTEDEREAIERLCRLGFERDLVIQAYFACD 362
Query: 379 KNEELAANYLLDHMHEFED 397
KNEELAAN+L D + +D
Sbjct: 363 KNEELAANFLFDQPDDADD 381
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 142/265 (53%), Gaps = 45/265 (16%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 213
S L G EA + + MG + R + RA+RAA+ NP+RAVEYL +GIPE
Sbjct: 133 SALTMGGEREAAIANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 189
Query: 214 ----AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-- 267
A P + AGG G A QA P+SG + P++LF
Sbjct: 190 QQTQARAPNSPTPAGGNTG---ATAQAN------PSSGGD-EPMNLFEAAAAAQNRGGAG 239
Query: 268 ---------------GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 312
A +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++
Sbjct: 240 GARSGGTGGAGAGALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQM 299
Query: 313 IQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 372
I + FL+L+ E + E L A QA++VT EEREAIERL +GF+R LV++
Sbjct: 300 IASNPEQFLQLLAE--DADEDAPLPPGA----QAISVTEEEREAIERLCRLGFERDLVIQ 353
Query: 373 VFFACNKNEELAANYLLDHMHEFED 397
+FAC+KNEELAAN+L D + +D
Sbjct: 354 AYFACDKNEELAANFLFDQPDDADD 378
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 143/257 (55%), Gaps = 38/257 (14%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L++GS EA + Q+ MG + R + RA+RAA+ NP+RA+EYL +GIP+ +
Sbjct: 123 SALLSGSQSEAVISQMESMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPDN-----I 174
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------- 270
+ A + AP+S P++LF + G+ G G
Sbjct: 175 QQEQQQQAAAAAAPPAPSAPSGESAPSSTGGDEPVNLF-EAAAQAGTGEGTGRGARAGAA 233
Query: 271 -------TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 323
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L
Sbjct: 234 GAGEGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQL 293
Query: 324 INEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 380
++E +G A+P A++VT EER+AIERL +GF R LV++ +FAC+KN
Sbjct: 294 LSEEDDG-----------ALPPGTHAISVTEEERDAIERLCRLGFSRDLVIQAYFACDKN 342
Query: 381 EELAANYLLDHMHEFED 397
EELAANYL ++ + +D
Sbjct: 343 EELAANYLFENPDDPDD 359
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
KV VK+ I +G +V Q LI+ GK+L+D T+E + E F+V M++K
Sbjct: 6 KVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSK 57
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 141/295 (47%), Gaps = 83/295 (28%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
+A SNL+ G TV +++MG + RE V RA+ A++NNPERAVEYL +GIP++ +
Sbjct: 184 RAESNLLMGEEFNRTVASMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPQEENL 240
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
+A N + PA A A+P + FL
Sbjct: 241 FTPGDDEESSRASNIHQGAASDLPAESA------ADPFE-------------------FL 275
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---GGE 332
R+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 276 RSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPLEDEVATN 335
Query: 333 GNVLGQ----------LASAMPQAVTV--------------------------------- 349
LG+ L S+ QA T
Sbjct: 336 AQRLGRTQSNSSRTENLTSSASQAATTEGQRSAAGSENQPISVALEGDGTVSAERNVPTE 395
Query: 350 -------TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
TP++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 396 SLATIRLTPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 448
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++K+ I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKRQIFNERGAE-YFVEKQKLIYAGVILTDDRTIN 59
Query: 61 ENKVAENSFVVVMLTKVI 78
KV E F+VVMLT+ I
Sbjct: 60 SYKVDEKKFIVVMLTRDI 77
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 138/260 (53%), Gaps = 34/260 (13%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE------- 211
S L+ G E V Q+ MG + R + RA+RAAY NP+RA+EYL +GIPE
Sbjct: 139 SALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHR 195
Query: 212 --------------QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 257
TA PP A + N + AQ A AP G
Sbjct: 196 EAAPAPPATTTPSGSTAAPPTTAAVGDDEHINL-FEAAAQ---AGAPQLGGAGRGARAAG 251
Query: 258 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 317
QGL G LDFLR++ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q
Sbjct: 252 QGLAPPAEGGNLGNLDFLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQ 311
Query: 318 TDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
FL+L++E ++ QL Q +TVT EER+AIERL +GF R V++ +FAC
Sbjct: 312 DQFLQLLSEDIDDD-----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFAC 365
Query: 378 NKNEELAANYLLDHMHEFED 397
+KNEELAAN+L + E +D
Sbjct: 366 DKNEELAANFLFEQPDEGDD 385
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 SYNIEEKGFIVCMVSK 73
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 36/233 (15%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-QTAVPPVARASAGGQ 226
E+ VQ+I+ MG D V RAL A++NNP+RA+EYL GIP+ A+PP+
Sbjct: 175 ESLVQEIMSMGYAEAD---VRRALLASFNNPDRAIEYLIEGIPDFPEALPPL-------- 223
Query: 227 AGNPPAQTQAQQPAAPAPTSGPNANPLD-----LFPQGLPNMGSNAGAGTLDFLRNSQQF 281
PT P+ NP+ G G L+FLR +F
Sbjct: 224 -----------------PTIQPDVNPVSGVTVAGIGSGGGGGGGGGAGSPLNFLREDPRF 266
Query: 282 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 341
+R +++ P++L +L +G+ NP L+ +I+EHQ DF+ ++NEP + G +
Sbjct: 267 IQMRRVIRQRPELLSSVLARIGETNPVLLSIIREHQDDFVAMLNEPEDEGSEEAPSEGHE 326
Query: 342 AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
A Q +++T EE AIERL A+GF R +VL+ + AC +NEE A++L HM +
Sbjct: 327 A--QEISLTEEESNAIERLVALGFPRQIVLQAYIACERNEEQTADFLCRHMED 377
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL F +E V D+K ++ + V P QQ LI+ G+VL + L+
Sbjct: 1 MKLTIKTLDQKTFYVEFDDTRTVWDLKSHLHKLPEVGVQPELQQ-LIYAGRVLDNDNALK 59
Query: 61 ENKVAENSFVVVM 73
+ E F+VVM
Sbjct: 60 TYSIDERKFLVVM 72
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 127/246 (51%), Gaps = 26/246 (10%)
Query: 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 223
GS EA++Q I++MG + R V ALRAA+NNP RAVEYL +GIP+ P V A A
Sbjct: 130 GSEREASIQNIMEMG---YQRAEVENALRAAFNNPHRAVEYLLTGIPQSLQRPEVPAAVA 186
Query: 224 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF---------PQGLPNMGSNAGAGTLDF 274
P A + ++ A +LF QG + A G L
Sbjct: 187 ------PVADSTHEELAQDHDIDDGEEQGENLFEAAAAAQARSQGAGAVEQPATGGGLAE 240
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL--------INE 326
+ + +Q LR +Q+NP+++QP+L++L NP + LIQ+ F+R +
Sbjct: 241 MGDDEQMNLLRASLQSNPELIQPILEQLASSNPRIATLIQQDPEAFIRTFLGAGADELGY 300
Query: 327 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+EG +G P + +T +++ AIERL +GF+R LV++V+ AC+KNEE+AA+
Sbjct: 301 EIEGDDGAEGADATGQQPIRIPLTEQDQNAIERLCELGFERDLVIQVYLACDKNEEVAAD 360
Query: 387 YLLDHM 392
L M
Sbjct: 361 ILFRDM 366
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + + + A Q ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPLEVELTDTVLATKEKLAAEKDCE---APQLKFVYSGKVLSDEKTLE 57
Query: 61 ENKVAENSFVVVMLT 75
E K+ E ++ M++
Sbjct: 58 EFKIKEGDSIIFMIS 72
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 133/276 (48%), Gaps = 62/276 (22%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
G ++ V GS TV +I++MG +DRE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 128 GTTDASFVTGSQRNETVNRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPE--- 181
Query: 215 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPL--------------DLFPQGL 260
+ P+Q QA+ A +G NAN +LF Q
Sbjct: 182 -------------ASEPSQQQAE---AVTSEAGANANSEVATDVPSQFTEHEDNLFAQAE 225
Query: 261 PNMG-----SNAGAGTLDFLR---NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 312
N G S AG G + + LR +V P+ L P+ + L + PHL
Sbjct: 226 ANNGEQGHESAAGLGGEEMGTIGLTMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRET 285
Query: 313 IQEHQTDFLRLINEPV-----------------EGGEGNVLGQLASAMPQAVTVTPEERE 355
+ + F+ L+ E V EG G+ GQ A P VT++ E+ E
Sbjct: 286 MLQDPQRFISLLLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPN-VTISAEDEE 344
Query: 356 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
AI RL +GF+R LV++++FAC+KNEE+AAN L ++
Sbjct: 345 AINRLCELGFERTLVVQIYFACDKNEEIAANMLFNN 380
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 136/270 (50%), Gaps = 54/270 (20%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE------- 211
S L+ G E V Q+ MG + R + RA+RAAY NP+RA+EYL +GIPE
Sbjct: 579 SALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHR 635
Query: 212 --------------QTAVPPVARA----------SAGGQAGNPPAQTQAQQPAAPAPTSG 247
TA PP A A QAG AP G
Sbjct: 636 EAAPAPPATTTPSGSTAAPPTTAAVGDDEHINLFEAAAQAG--------------APQLG 681
Query: 248 PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNP 307
QGL G LDFLR++ FQ LR +VQ PQ+L+P+LQ++G NP
Sbjct: 682 GAGRGARAAGQGLAPPAEGGNLGNLDFLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNP 741
Query: 308 HLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 367
L +LI ++Q FL+L++E ++ QL Q +TVT EER+AIERL +GF R
Sbjct: 742 QLAQLIGQNQDQFLQLLSEDIDDD-----AQLPPGAHQ-ITVTEEERDAIERLCRLGFPR 795
Query: 368 ALVLEVFFACNKNEELAANYLLDHMHEFED 397
V++ +FAC+KNEELAAN+L + E +D
Sbjct: 796 DSVIQAYFACDKNEELAANFLFEQPDEGDD 825
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTK 76
F+V M++K
Sbjct: 505 GFIVCMVSK 513
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 136/270 (50%), Gaps = 54/270 (20%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE------- 211
S L+ G E V Q+ MG + R + RA+RAAY NP+RA+EYL +GIPE
Sbjct: 579 SALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHR 635
Query: 212 --------------QTAVPPVARA----------SAGGQAGNPPAQTQAQQPAAPAPTSG 247
TA PP A A QAG AP G
Sbjct: 636 EAAPATPATTTPSGSTAAPPTTAAVGDDEHINLFEAAAQAG--------------APQLG 681
Query: 248 PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNP 307
QGL G LDFLR++ FQ LR +VQ PQ+L+P+LQ++G NP
Sbjct: 682 GAGRGARAAGQGLAPPAEGGNLGNLDFLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNP 741
Query: 308 HLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 367
L +LI ++Q FL+L++E ++ QL Q +TVT EER+AIERL +GF R
Sbjct: 742 QLAQLIGQNQDQFLQLLSEDIDDD-----AQLPPGAHQ-ITVTEEERDAIERLCRLGFPR 795
Query: 368 ALVLEVFFACNKNEELAANYLLDHMHEFED 397
V++ +FAC+KNEELAAN+L + E +D
Sbjct: 796 DSVIQAYFACDKNEELAANFLFEQPDEGDD 825
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTK 76
F+V M++K
Sbjct: 505 GFIVCMVSK 513
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 139/259 (53%), Gaps = 43/259 (16%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L+ G E + Q+ MG + R + RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 133 SALLMGPQGEQVIAQMESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE------- 182
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP--------------------- 257
S Q PA T PAAPA T G ++LF
Sbjct: 183 --TSQAEQREAAPATTAPSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATG 238
Query: 258 QGLPNMGSNAGA--GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 315
QGL G G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI +
Sbjct: 239 QGLATAAEGQGGSLGNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQ 298
Query: 316 HQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
+Q FL+L++E +E QL Q +TVT EER+AIERL +GF R V++ +F
Sbjct: 299 NQDQFLQLLSEDIEDD-----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYF 352
Query: 376 ACNKNEELAANYLLDHMHE 394
AC+KNEELAAN+L + E
Sbjct: 353 ACDKNEELAANFLFEQPDE 371
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M+TK
Sbjct: 58 SYNIEEKGFIVCMVTK 73
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 125/454 (27%), Positives = 185/454 (40%), Gaps = 98/454 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K K F IEV+P D + K+ + Q D P Q ++ GK+LKD T E
Sbjct: 1 MKVIFKNFKKEKFPIEVEPSDSILSGKEKLSAAQ--DCQPG-QLKFVYSGKILKDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
V + ++ M +K +R + P+ +P+ Q +
Sbjct: 58 FFNVKDGDQIIFMKSK-LRKQKSKPEP-------KPEAQAXXGXAEXSS----------- 98
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
N ++ + S + S G + VQ I+ MG
Sbjct: 99 --ENAAVESSSTSNXXSXPAQIXAENQESSTGAXEFTESTFAIGRARQTAVQNIMGMG-- 154
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPE----------------------------- 211
++RE V RAL AA+NNP+RAVEYL +GIPE
Sbjct: 155 -FEREQVERALTAAFNNPDRAVEYLLNGIPESHHQASAPAPPAPAAEPSAEAAXEKSXGX 213
Query: 212 ----QTAVPPVA-----RASAGGQAGNP---PAQTQAQQPAAPAPTSGPNANPLDLFPQG 259
Q P A A + G++ P + A + N N +LF +
Sbjct: 214 VDEXQXTAPKNASEGNTEAGSSGKSEEPVKIAENVENTNATATTXQTPXNPNSQNLFERA 273
Query: 260 LP-----NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 314
N G N+ G D++ +LR ++Q P++ + +LQ++ NP L +IQ
Sbjct: 274 AAXAQGQNTGENSQEG--DYMG------SLRELLQQRPEMAEIVLQQMAXSNPQLAEVIQ 325
Query: 315 EHQTDFLRLINE------------PVEGGEGNVLGQLASAMPQA----VTVTPEEREAIE 358
+ F+R I P E EG+ A +A + VTPEE AI
Sbjct: 326 RNPEAFMRYITSGDQDALAESLGIPKEYLEGSGXVDDAEDGEEANVPRIEVTPEENAAIN 385
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 391
RL +GFDR+LV++V+FAC+KNEE+AAN L DH
Sbjct: 386 RLCELGFDRSLVIQVYFACDKNEEMAANLLFSDH 419
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 139/270 (51%), Gaps = 45/270 (16%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ----- 212
AS GS E + I++MG ++R V +ALRAA+NNP+RAVEYL +GIPEQ
Sbjct: 137 ASTFATGSAREKAIANIMEMG---YERPQVEQALRAAFNNPDRAVEYLLTGIPEQFQQQA 193
Query: 213 --------TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNM 263
TAV + G G A QP+AP+ T A DLF
Sbjct: 194 QQSQPQPPTAVEESGEQTEGSNTG-----ATATQPSAPSGTEEHSTAESGDLFAAAAAAA 248
Query: 264 GSNAGAGT-------LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 316
G N G+G+ + +R +V+ NP++L+P+L++L +Q P L LIQ++
Sbjct: 249 GGNPGSGSSPGASHRTGGAPSGGGLDQIREIVRTNPEMLEPLLEQLSQQYPQLNGLIQQN 308
Query: 317 QTDFLRLI----NEPVEGGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGF 365
+F+ +I NE GEG LG PQA V +T E++ AI RL +GF
Sbjct: 309 PEEFINMILNGVNEDELSGEG--LG--TEVAPQAGEDGTVEVPITEEDQAAINRLVELGF 364
Query: 366 DRALVLEVFFACNKNEELAANYLL-DHMHE 394
+ L ++V+FAC+KNEELAAN L DH +
Sbjct: 365 ESNLAIQVYFACDKNEELAANILFNDHADQ 394
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K IE++P + V K+ + V+G +V Q ++ GKVL+D T+E
Sbjct: 1 MQVIFKDFKKEKIPIELEPTETVLQAKEKLAQVKGVEV---KQLKFVYSGKVLQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKV 77
K+ + V+ M++KV
Sbjct: 58 STKIKADDQVIFMISKV 74
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 136/271 (50%), Gaps = 46/271 (16%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 142 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 198
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS-- 278
+A A T A+QP+ A T+ A DLF Q G NA +G L +
Sbjct: 199 QTAAAAEQPSTAATTAEQPSTAATTAEQPAED-DLFAQAA--QGGNASSGALGTTGGATD 255
Query: 279 --------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------------L 309
+ +LR +V NP+ L P+L+ + + P L
Sbjct: 256 AAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSML 315
Query: 310 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLE 361
+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL
Sbjct: 316 LEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLC 375
Query: 362 AMGFDRALVLEVFFACNKNEELAANYLL-DH 391
+GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 376 ELGFERDLVIQVYFACDKNEEAAANILFSDH 406
>gi|195604818|gb|ACG24239.1| hypothetical protein [Zea mays]
Length = 98
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 310 MRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 367
M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE EAI RLE MGFDR
Sbjct: 1 MQLIQENQAEFMRLISEPLEGDEENEMMLDQMADA-TETIAVTPEENEAILRLEGMGFDR 59
Query: 368 ALVLEVFFACNKNEELAANYLLDHMHEFED 397
ALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 60 ALVLEVFFACNKNEQLAANYLLDHMHEFDN 89
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 126/250 (50%), Gaps = 44/250 (17%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A
Sbjct: 182 QAARALLTRPASEQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRAS 238
Query: 216 -----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
PP A +S G+ + A + A TSG +PLD
Sbjct: 239 AAEVEPPQAGSSGAGR-------SSAVEADAGTATSGSGGHPLD---------------- 275
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
FL N +FQ LR ++Q +P +L +LQ + +NP L+ ++Q R++ PVE
Sbjct: 276 ---FLLNHPEFQQLRQIIQHDPSLLPEVLQGIRPRNPQLLAQFSQYQGYLSRMLTAPVEE 332
Query: 331 G----------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 380
+ + A A + +TP E AIERL+A+GF LV+E +FAC KN
Sbjct: 333 AGGERRGGEGVDSVGTAEAARADGSYIKITPRELAAIERLKALGFPEGLVVEAYFACEKN 392
Query: 381 EELAANYLLD 390
EE AAN+LL+
Sbjct: 393 EEWAANFLLE 402
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K F I++ P V +K+ IE QG D +P + Q L++ G+VL D L
Sbjct: 1 MRLTLKAWPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E+ V V++ +
Sbjct: 61 DCQIHEHHAVTVLVAR 76
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 144/253 (56%), Gaps = 35/253 (13%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L++G+ EA V Q+ MG + R V RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 137 SALLSGTQSEAVVAQMEAMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQ 193
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------- 270
+A+A ++ AP++G + P++LF G GA
Sbjct: 194 QQAAAASAPQTAAPES--------APSAG-DDEPVNLFEAAAQAGGQEGGARGARAAGGA 244
Query: 271 ---TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E
Sbjct: 245 ELPSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEE 304
Query: 328 VEGGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
+ E A+P T VT EER+AIERL +GF R LV++ +FAC+KNEELA
Sbjct: 305 PDDDE---------ALPPGTTQIHVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELA 355
Query: 385 ANYLLDHMHEFED 397
ANYL ++ + ED
Sbjct: 356 ANYLFENPDDPED 368
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 SYNIEEKGFIVCMVSK 73
>gi|6688552|emb|CAB65692.1| Rad23 Protein [Solanum lycopersicum var. cerasiforme]
Length = 65
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 63/65 (96%)
Query: 333 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
GNVLGQ A A+PQAVTVTPEEREAIERLEAMGFDRALVLEV+FACNKNEELAANYLLDH+
Sbjct: 1 GNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHL 60
Query: 393 HEFED 397
HEF++
Sbjct: 61 HEFDE 65
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 144/255 (56%), Gaps = 31/255 (12%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L+ G+ + + Q+L MG + R + RA+RAAY NP+RA+EYL +GIP++ P
Sbjct: 139 SALLMGNQGQEAITQMLAMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPDE---PER 192
Query: 219 ARASAGGQAGNPPAQTQA-------------QQPAAPAPTSGPNANPLDLFPQGLPNMGS 265
SA PA T+ +Q AA A G + G + S
Sbjct: 193 EAPSAPAAGSARPAATEGASESQVQESLNLFEQAAAQASGGGSGRSRGAGAGAGAGSGES 252
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++
Sbjct: 253 AGSLGSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLS 312
Query: 326 EPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
E V+ + +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEE
Sbjct: 313 EDVDD---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEE 363
Query: 383 LAANYLLDHMHEFED 397
LAAN+L D E ED
Sbjct: 364 LAANFLFDQPDENED 378
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P +K+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYSIEEKGFIVCMV 71
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 134/275 (48%), Gaps = 74/275 (26%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AASN S E+ +QQIL+M G+W RE V AL AY++ +A+EY+Y GIP ++
Sbjct: 116 AASNGNYESISESNIQQILEMVRGAWSREAVAYALCLAYDDLNKALEYIYFGIPVKSE-- 173
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
+ + Q Q+PA DL +LD LR
Sbjct: 174 -----------DHYTTEEQTQEPAE-----------ADL-------------EWSLDSLR 198
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI----NEPVEGGE 332
++ +F+ LR +VQ++P +L L L KQNP RLIQ+++ DFLRL+ EP GG+
Sbjct: 199 HTPEFEHLRPLVQSDPSLLMDFLLMLKKQNPPFFRLIQDNKADFLRLLLEQPQEPNNGGD 258
Query: 333 -GNVLG-------------------------------QLASAMPQAVTV-TPEEREAIER 359
GN +G Q+ + V V TPE+ E I+R
Sbjct: 259 SGNQVGDSEETQVAQLPKELQADQTNEPNNGGGDGGNQVGESKEAKVEVATPEDYELIKR 318
Query: 360 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
LEA+GF+R +FACN+N ++AAN+LL + HE
Sbjct: 319 LEALGFERGDAAVAYFACNRNLQVAANHLLGYKHE 353
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVK LKG FEI+V PED V DVKKNIETV G YPA++Q+LIH+GKVLKD TTL
Sbjct: 1 MKIFVKNLKGARFEIQVSPEDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTK 76
N V+E S + V+ K
Sbjct: 61 ANNVSEKSVIGVIKKK 76
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 139/259 (53%), Gaps = 43/259 (16%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L+ G E + Q+ MG + R + RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 137 SALLMGPQGEQVIAQMESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE------- 186
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP--------------------- 257
S Q PA T PAAPA T G ++LF
Sbjct: 187 --TSQAEQREAAPATTAPSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATG 242
Query: 258 QGLPNM--GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 315
QGL G G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI +
Sbjct: 243 QGLAAAAEGQQGSLGNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQ 302
Query: 316 HQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
+Q FL+L++E +E QL Q +TVT EER+AIERL +GF R V++ +F
Sbjct: 303 NQDQFLQLLSEDIEDD-----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYF 356
Query: 376 ACNKNEELAANYLLDHMHE 394
AC+KNEELAAN+L + E
Sbjct: 357 ACDKNEELAANFLFEQPDE 375
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M+TK
Sbjct: 58 SYNIEEKGFIVCMVTK 73
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 139/259 (53%), Gaps = 43/259 (16%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L+ G E + Q+ MG + R + RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 137 SALLMGPQGEQVIAQMESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE------- 186
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP--------------------- 257
S Q PA T PAAPA T G ++LF
Sbjct: 187 --TSQAEQREAAPATTAPSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATG 242
Query: 258 QGLPNM--GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 315
QGL G G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI +
Sbjct: 243 QGLAAAAEGQQGSLGNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQ 302
Query: 316 HQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
+Q FL+L++E +E QL Q +TVT EER+AIERL +GF R V++ +F
Sbjct: 303 NQDQFLQLLSEDIEDD-----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYF 356
Query: 376 ACNKNEELAANYLLDHMHE 394
AC+KNEELAAN+L + E
Sbjct: 357 ACDKNEELAANFLFEQPDE 375
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M+TK
Sbjct: 58 SYNIEEKGFIVCMVTK 73
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 134/274 (48%), Gaps = 52/274 (18%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S V + + V G TV++I++MG ++R V RALRAA+NNP+RAVEYL +GIP
Sbjct: 113 SVVADNSTPDFVTGQQRNETVERIMEMG---YERAQVERALRAAFNNPDRAVEYLITGIP 169
Query: 211 EQTAVPPVARASAGGQAGNPPAQT--QAQQPAAPA---PTSGPNANPLDLFPQGLPNMGS 265
A A P QT QAQ A+P P P+ + DLF Q L N G
Sbjct: 170 ------------AAQPAEQPAEQTPEQAQSSASPEHSEPPEQPHED--DLFAQALGNNGQ 215
Query: 266 NAGA----GTLDFLRNS---------QQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 312
+AGA GT + + ALR +V NP+ L P+L+ L + P L
Sbjct: 216 SAGAEGTPGTPGTASAAPPGSIGLTVEDLMALREVVSGNPEALAPLLENLSNRYPQLREQ 275
Query: 313 IQEHQTDFLRLI-----------------NEPVEGGEGNVLGQLASAMPQAVTVTPEERE 355
I + F+ ++ +E + GE G +S Q V ++ + +
Sbjct: 276 IMANPEVFVSMLLEVVGENLTHMDEFTAESEAAQSGEAPGAGGPSSESAQIVQLSEHDEQ 335
Query: 356 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
A+ERL +GF+R LV++V+FAC KNEE+ AN L
Sbjct: 336 AVERLCELGFERTLVIQVYFACEKNEEITANMLF 369
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 47/243 (19%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVP 216
++ + GS L++++ +++ +G + RE V+RAL+ ++ N +RA EYL SG +PE
Sbjct: 140 GTSFLTGSALDSSINELMSLG---FSREQVLRALQRSFQNADRAAEYLLSGNVPELVE-- 194
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFL 275
+ P + A PA + GA G L+FL
Sbjct: 195 ------------DAPGDIDEESEALPA----------------------DVGAEGDLNFL 220
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----- 330
R+ QF+ +R+ VQ +P L +LQE+G+ NP L++LI ++Q F+ L+NEP G
Sbjct: 221 RDFPQFRMMRSQVQRHPDTLPQLLQEIGRSNPQLLQLISQNQEAFIALLNEPETGESSAP 280
Query: 331 -GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
E G + + VT EE+ AI+R+ MGF+ A V++ FFAC KNE+LA +LL
Sbjct: 281 VSEDAFGGDAGAGGGFQIHVTTEEKAAIDRIVGMGFNEAEVIQAFFACEKNEQLAIEFLL 340
Query: 390 DHM 392
+
Sbjct: 341 SSI 343
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IEV DKV +K+ I +GS+ +P Q LI+ GK+L D L
Sbjct: 1 MLITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSE-FPIECQRLIYSGKILDDDKALC 59
Query: 61 ENKVAE-NSFVVVMLTK 76
E + +FVVVM K
Sbjct: 60 EYNIDPVKNFVVVMSVK 76
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 127/234 (54%), Gaps = 46/234 (19%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E TVQ I+ MG + R+ VIRALRAA+ N +RAVEYL + IP++ + GQ
Sbjct: 137 EETVQAIVAMG---YPRDRVIRALRAAFFNGDRAVEYLCTEIPDEEEL--------AGQH 185
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 287
A+ A + +A QGL +FLR QF+ LR +
Sbjct: 186 DEGEAEESAGEESA----------------QGL------------EFLRQLPQFEQLREL 217
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-----VEGGEGNVLGQLASA 342
VQ+NP IL ++Q++ + NP LMR IQ +Q F+ L+N P +GG A A
Sbjct: 218 VQSNPAILPQIIQQIAQSNPALMRAIQSNQEQFVNLLNAPSTEGGGQGGAAPGGAPQAHA 277
Query: 343 MPQ--AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
P+ A+ VT ER+AI RL+AMGF LV+E +FAC+KNE+LA NY+L M E
Sbjct: 278 QPRGIAIEVTAAERDAINRLKAMGFPEQLVIEAYFACDKNEDLAVNYILARMDE 331
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KT+ F +EV P + ++K I +G YP Q LI+ GK+L D T+E
Sbjct: 1 MKITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ F+VVM+ +
Sbjct: 61 ELKIDAAKFIVVMVAR 76
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 124/241 (51%), Gaps = 27/241 (11%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
A S L G LE T+ ++ MG + R A+RAA+NNP+RAVEYL +G+P
Sbjct: 163 AESALFTGPQLEETLTHLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP------ 213
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
P A GG + A+TQ P + D P G LR
Sbjct: 214 PEVSAMLGGDS----AETQEAHGDVPPEEGDAEGDEDDENPLGA--------------LR 255
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ F +R MVQANP +L +LQ +G NP L+ LI ++Q FL ++ GE
Sbjct: 256 HHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAA 315
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
G A P + +T EE EA++RLE++GF R +E + AC++NEE+AANYL +++++
Sbjct: 316 GTGGFAAPGIIQMTAEEMEALQRLESLGFSRHQAVEAYLACDRNEEMAANYLFENLNDLG 375
Query: 397 D 397
D
Sbjct: 376 D 376
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKVI 78
+ + + EN +VVM+TK +
Sbjct: 59 DCSALKENDRLVVMVTKAV 77
>gi|156086838|ref|XP_001610826.1| DNA repair protein Rad23, putatitve [Babesia bovis T2Bo]
gi|154798079|gb|EDO07258.1| DNA repair protein Rad23, putatitve [Babesia bovis]
Length = 313
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 42/241 (17%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
A S LV GS LE + +I +MG + R V A+ AA+NNP+RAVE+L +G +P
Sbjct: 109 AESTLVTGSELEMNIARICEMG---FPRAEVEAAMAAAFNNPDRAVEFLTTG-----TIP 160
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
+ S AG ++ G + + + L ++
Sbjct: 161 DTSMISNSSDAG--------------------------VYDGGADMLRNIPMSDNLASIQ 194
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ FQ LR ++Q++PQ+LQ +L+ +G+ +P L++ I EHQ +F+ ++N + +
Sbjct: 195 SHPAFQQLRQVIQSDPQVLQRLLENIGETDPELLQKIIEHQDEFMEMLNS------SDDM 248
Query: 337 GQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
SA P V +T E +++ERLE +GF RA V+E F AC+KNEELAANYLL++ ++
Sbjct: 249 NGFPSADDGPNFVHLTEAEIQSVERLEGLGFSRAAVIEAFLACDKNEELAANYLLENAND 308
Query: 395 F 395
F
Sbjct: 309 F 309
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK 54
MK+ +KTL E++VK V ++ K +ET S P+ +Q LIH GKVLK
Sbjct: 1 MKLKIKTLNNLEAEVDVKDGSSVEELMKIVETHLPS--MPSDRQKLIHSGKVLK 52
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 147/250 (58%), Gaps = 30/250 (12%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L+ GS E + Q++ MG ++RE + RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 138 SALLTGSQSEEVINQMMSMG---FEREQINRAMRAAFFNPDRAIEYLLNGIPENIQQEQQ 194
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------- 270
R++A A A A AP TSG + P++LF GAG
Sbjct: 195 QRSAATTPA----APQAAAASGAPPATSGED-EPVNLFEAAAQAGEGRGGAGGASGGEPQ 249
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
+LDFLRN FQ LR +VQ PQ+L+P+LQ++G+ NP + +LI +++ FL+L++E
Sbjct: 250 SLDFLRNHPAFQQLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSE---- 305
Query: 331 GEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
+ +A+P T VT EER+AIERL +GF R LV++ +FAC+KNEELAANY
Sbjct: 306 -------EDDAALPPGTTQIHVTEEERDAIERLCRLGFPRDLVIQAYFACDKNEELAANY 358
Query: 388 LLDHMHEFED 397
L ++ + +D
Sbjct: 359 LFENSDDGDD 368
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 FYNIEEKGFIVCMVSK 73
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 126/241 (52%), Gaps = 25/241 (10%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
A S L G LE T+ ++ MG + R+ +A+RAA+NNP+RAVEYL +G+P
Sbjct: 151 AESALFTGPQLEETLTHLVAMG---FPRDQAEQAMRAAFNNPDRAVEYLMNGMP------ 201
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
P A GG +G +AQ A + + G L LR
Sbjct: 202 PEVSALFGGASG------EAQDAEGDA---------IADEGDADGDEGDEDDGNPLGALR 246
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ F +R MVQANP +L +LQ +G NP L+ LI ++Q FL ++ GE
Sbjct: 247 HHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSGQGTGEAGAP 306
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
G A + +TP+E EA++RLEA+GF R +E + AC++NEE+AANYL +++++
Sbjct: 307 GTGFGA-GGIIQMTPDEMEALQRLEALGFSRHQAVEAYLACDRNEEMAANYLFENLNDLG 365
Query: 397 D 397
D
Sbjct: 366 D 366
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ ++TL E++V PE+ + ++K+ +E Q PA +Q L+H GK+L D ++
Sbjct: 1 MRLRIRTLSNEEAELDVGPEETIFNLKEKVE--QKWPHMPAVRQKLVHAGKILADSQKVK 58
Query: 61 EN-KVAENSFVVVMLTKVI 78
E + EN +VVM+TK +
Sbjct: 59 ECPSLKENDRLVVMVTKAV 77
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 140/293 (47%), Gaps = 75/293 (25%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
+A SNL+ G TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP +
Sbjct: 76 SRAESNLLMGDEYNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEG 132
Query: 215 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 274
+ ++ NP + P+ P P S +A + + + +F
Sbjct: 133 T----FYNRLNESTNP-----SLIPSGPQPASATSAE-----------RSTESNSDPFEF 172
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--EGGE 332
LR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+ E
Sbjct: 173 LRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIDRESES 232
Query: 333 GNVLGQLASA------------MPQAVTVTPEER-------------------------- 354
G + +++A P T +R
Sbjct: 233 GATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAHQSGSAADNEDLEQPLGV 292
Query: 355 ----------EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+AIERL+A+GF ALVL+ +FAC KNEE AAN+LL F+D
Sbjct: 293 STIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLLS--SSFDD 343
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 130/247 (52%), Gaps = 23/247 (9%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 219
+ +G EA++Q I++MG ++R V ALRA++NNP RAVEYL +GIPE P ++
Sbjct: 131 DFASGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRAVEYLLTGIPESLQRPQIS 187
Query: 220 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP-------QGLPNMGSNAGAGTL 272
A+A G P A ++A A T G +LF QG G+ +GA
Sbjct: 188 NAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAAAAAQQG--ESGAGSGAAGG 241
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI---NEPVE 329
+ Q + LRT +Q NP+++QP+L++L NP + LIQ+ F+R E +E
Sbjct: 242 ADQGDDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLIQQDPEAFVRTFLGEGEDIE 301
Query: 330 GGEGNVLGQLASAMPQ----AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
+ A+ ++ ++ AI RL +GFDR LV++V+ AC+KNEE+AA
Sbjct: 302 FDDAEGELAAGEGGLGAGEVAIQLSEQDESAIGRLCELGFDRNLVIQVYIACDKNEEVAA 361
Query: 386 NYLLDHM 392
+ L M
Sbjct: 362 DILFRDM 368
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 144/253 (56%), Gaps = 35/253 (13%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L++G+ EA V Q+ MG + R V RA+RAA+ NP+RA+EYL +GIPE
Sbjct: 137 SALLSGTQSEAVVAQMEAMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQ 193
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------- 270
+A+A + ++ AP++G + P++LF G G
Sbjct: 194 QQAAAASAPQSAAPES--------APSAG-DDEPVNLFEAAAQAGGQEGGGRGARAAGGA 244
Query: 271 ---TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E
Sbjct: 245 ELPSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEE 304
Query: 328 VEGGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
+ E A+P T VT EER+AIERL +GF R LV++ +FAC+KNEELA
Sbjct: 305 PDDDE---------ALPPGTTQIHVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELA 355
Query: 385 ANYLLDHMHEFED 397
ANYL ++ + ED
Sbjct: 356 ANYLFENPDDPED 368
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 SYNIEEKGFIVCMVSK 73
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 32/246 (13%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA----------------GT 271
P A QA PAA N DL Q +G++AG G
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ----LGNSAGGRGARGAEGAGAEAAGLGN 264
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL
Sbjct: 265 LDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL---------- 314
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
N+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L D
Sbjct: 315 --NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQ 372
Query: 392 MHEFED 397
E +D
Sbjct: 373 GPEEDD 378
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +E++P + +S VK+ I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETISKVKQKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV ++ K
Sbjct: 58 SYKIEEKGFVVCVVNK 73
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 133/271 (49%), Gaps = 56/271 (20%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 142 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 198
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS-- 278
+A A T A+QPA DLF Q G NA +G L +
Sbjct: 199 QTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGTTGGATD 245
Query: 279 --------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------------L 309
+ +LR +V NP+ L+P+L+ + + P L
Sbjct: 246 AAQGGPPGSIGLTVEDLLSLRQVVSGNPEALRPLLENISARYPQLREHIMANPEVFVSML 305
Query: 310 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLE 361
+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL
Sbjct: 306 LEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLC 365
Query: 362 AMGFDRALVLEVFFACNKNEELAANYLL-DH 391
+GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 366 ELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 129/246 (52%), Gaps = 32/246 (13%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA----------------GT 271
P A QA PAA N DL Q +G++AG G
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ----LGNSAGGRGARGAEGAGAEAAGLGN 264
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL
Sbjct: 265 LDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL---------- 314
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
N+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L D
Sbjct: 315 --NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQ 372
Query: 392 MHEFED 397
E +D
Sbjct: 373 GPEEDD 378
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +E++P + +S VK+ I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETISKVKQKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV ++ K
Sbjct: 58 SYKIEEKGFVVCVVNK 73
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 134/258 (51%), Gaps = 45/258 (17%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
S +++ +A SNLV G + E+ V +I+ MG ++RE V+ ALRA++NNP+RAVEYL
Sbjct: 145 SSGTNLIDEAVSNLVTGPSYESMVNEIMLMG---YEREQVVAALRASFNNPDRAVEYLL- 200
Query: 208 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
TA P A A+ A PA T +PA G NPL
Sbjct: 201 -----TAAGPAAEATPASSAPAAPAGT-----GSPAGAEG--VNPLS------------- 235
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR----- 322
FLRN QFQ +R ++Q N +L +LQE+G++NP L+R+ +T
Sbjct: 236 ------FLRNQPQFQQMRQLIQQNAALLPTLLQEIGRENPELLRVTLAARTQRCSASTSA 289
Query: 323 --LINEPVEGGEGNVLGQLASAMP-QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
LI + G A P + + VT +E+EAIERL+ +GF LV++ FFAC K
Sbjct: 290 PHLIFXXXGATAAGMAGGTAGENPMRYIQVTAQEKEAIERLKELGFPEGLVIQAFFACEK 349
Query: 380 NEELAANYLLDHMHEFED 397
NE LAAN+LL F+D
Sbjct: 350 NENLAANFLL--QQNFDD 365
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ GK+L D L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLK 60
Query: 61 ENKVAENSFVVVM 73
E K+++ +FVVVM
Sbjct: 61 EYKISDKNFVVVM 73
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 132/271 (48%), Gaps = 56/271 (20%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 142 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 198
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS-- 278
+A A T A+QPA DLF Q G NA +G L +
Sbjct: 199 QTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGTTGGATD 245
Query: 279 --------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------------L 309
+ +LR +V NP+ L P+L+ + + P L
Sbjct: 246 AAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSML 305
Query: 310 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLE 361
+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL
Sbjct: 306 LEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLC 365
Query: 362 AMGFDRALVLEVFFACNKNEELAANYLL-DH 391
+GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 366 ELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 127/245 (51%), Gaps = 36/245 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S +A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQS--SAVAAAAATTTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIER+ + LVL
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERVSLSKTLKKLVLGWAH 388
Query: 376 ACNKN 380
ACN +
Sbjct: 389 ACNSS 393
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 132/271 (48%), Gaps = 56/271 (20%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 142 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 198
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS-- 278
+A A T A+QPA DLF Q G NA +G L +
Sbjct: 199 QTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGTTGGATD 245
Query: 279 --------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------------L 309
+ +LR +V NP+ L P+L+ + + P L
Sbjct: 246 AAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSML 305
Query: 310 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLE 361
+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL
Sbjct: 306 LEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLC 365
Query: 362 AMGFDRALVLEVFFACNKNEELAANYLL-DH 391
+GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 366 ELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|444526365|gb|ELV14316.1| UV excision repair protein RAD23 like protein A [Tupaia chinensis]
Length = 261
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 134/262 (51%), Gaps = 76/262 (29%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
+A + V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL
Sbjct: 54 SAPSTVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLL---------- 100
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
T++Q PA +G N L+FLR
Sbjct: 101 -----------------TESQVSEQPATEAGDN---------------------PLEFLR 122
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP--------- 327
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 123 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 182
Query: 328 --VEGGEGNVLGQLASAMPQAVTVTPEEREAIER----------LEAMGFDRALVLEVFF 375
VE GE +G+ A M + VTP+E+EAIER L+A+GF +LV++ +F
Sbjct: 183 VDVE-GEVGAIGEEAPQM-NYIQVTPQEKEAIERGRGPAGRAPSLKALGFPESLVIQAYF 240
Query: 376 ACNKNEELAANYLLDHMHEFED 397
AC KNE LAAN+LL F+D
Sbjct: 241 ACEKNENLAANFLLS--QNFDD 260
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 128/243 (52%), Gaps = 23/243 (9%)
Query: 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 223
G EA++Q I++MG ++R V ALRA++NNP RAVEYL +GIPE P ++ A+A
Sbjct: 135 GDEREASIQNIMEMG---YERTQVEAALRASFNNPHRAVEYLLTGIPESLQRPQISNAAA 191
Query: 224 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP-------QGLPNMGSNAGAGTLDFLR 276
G P A ++A A T G +LF QG G+ +GA
Sbjct: 192 SGAVSAPSAVSEADTSADADNTEGAE----NLFEAAAAAAQQG--ESGAGSGAAGGADQG 245
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI---NEPVEGGEG 333
+ Q + LRT +Q NP+++QP+L++L NP + LIQ+ F+R E +E +
Sbjct: 246 DDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLIQQDPEAFVRTFLGEGEDIEFDDA 305
Query: 334 NVLGQLASAMPQ----AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
A+ ++ ++ AI RL +GFDR LV++V+ AC+KNEE+AA+ L
Sbjct: 306 EGELAAGEGGLGAGEVAIQLSEQDESAIGRLCELGFDRNLVIQVYIACDKNEEVAADILF 365
Query: 390 DHM 392
M
Sbjct: 366 RDM 368
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 66/76 (86%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI+V D V DVKKNIE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60
Query: 61 ENKVAENSFVVVMLTK 76
EN+VAENSF+V+ML+K
Sbjct: 61 ENQVAENSFIVIMLSK 76
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 59/68 (86%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
SNL+AGS LE T+QQIL+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ P V
Sbjct: 137 SNLIAGSTLEPTIQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEAPAV 196
Query: 219 ARASAGGQ 226
A ++ GQ
Sbjct: 197 AASTNVGQ 204
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 137/259 (52%), Gaps = 48/259 (18%)
Query: 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 223
G+ I++M G ++R + RA+RAA+ NP+RAV+YL +GIPE
Sbjct: 137 GTTFNDPEDAIVNMMGMGFERSEIERAMRAAFFNPDRAVDYLLNGIPEHLTQ-------- 188
Query: 224 GGQAGNPPAQTQAQQPAAP-----------------APTSGPNANP--LDLFPQ------ 258
PAQ+ +PAA SG A P ++LF
Sbjct: 189 -----ERPAQSSTTRPAAQSAQSAARPAAATAPATGGSASGEGAEPENINLFEAAAAAAS 243
Query: 259 ---GLPNMGSNAGA---GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 312
G + G + GA G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L
Sbjct: 244 QRGGAHSQGRSGGAASLGNLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGMGNPQLAAT 303
Query: 313 IQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 372
I + FLRL++E +G L ++ ++VTPEE +AIERL +GFDR +V++
Sbjct: 304 ISSNPEAFLRLLSEDPADEDGGALPPGSN----HISVTPEESDAIERLCRLGFDRDMVIQ 359
Query: 373 VFFACNKNEELAANYLLDH 391
+FAC+KNEELAAN+L +
Sbjct: 360 AYFACDKNEELAANFLFEQ 378
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P D +S VK+ I +G D A+ Q LI+ GK+L+D T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPTDTISQVKEKINKEKGWD---AAAQKLIYSGKILQDDKTVG 57
Query: 61 ENKVAENSFVVVMLT 75
+ K+ E FVV M++
Sbjct: 58 DYKIEEKGFVVCMIS 72
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 105/188 (55%), Gaps = 41/188 (21%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 219
N+V+ + ATVQQ++DMG + + V ALRAA+NNPERAVEYL +GIPEQ A P
Sbjct: 145 NVVSDEQMSATVQQLVDMG---FPEDQVRSALRAAFNNPERAVEYLMTGIPEQAAAP--- 198
Query: 220 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 279
AQT P+SG +A GS+ A +L+ LRN
Sbjct: 199 ------------AQT-------AVPSSGASA-------------GSDDVANSLEALRNHP 226
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV---EGGEGNVL 336
QF ALR +VQ+NP L +LQ++G Q+P L+RLI ++Q F++++NEP+ E G
Sbjct: 227 QFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPIGTREAGSAPSS 286
Query: 337 GQLASAMP 344
G A A P
Sbjct: 287 GSGAGAAP 294
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F ++ + D VS VK+ I+ +Q +P SQQ LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIKELQK---FPVSQQKLIHAGKVLKDDSTLA 57
Query: 61 ENKVAENSFVVVMLTK 76
E V EN F+VVM+TK
Sbjct: 58 EYNVKENDFLVVMVTK 73
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 395
+ ++ EE A++RL MGF+R V++ + AC+KNE LAAN+L+D F
Sbjct: 381 IMLSEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLMDSGDNF 429
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 127/252 (50%), Gaps = 36/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S Q +NL GS LE V +++MG +DR V++A+RA++NNPERAVEYL +GIP
Sbjct: 114 SSTPSQPGNNLAMGSELETAVSNMVEMG---FDRAQVMKAMRASFNNPERAVEYLMTGIP 170
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP----QGLPNMGSN 266
+ P + P T A PL+LF Q P G
Sbjct: 171 QHLQQPEQSEQPQQQSEQQPNQPTGA---------------PLNLFDAARQQSSPAAGQA 215
Query: 267 AGAGTLDFLRNSQQFQALRTMVQA---NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 323
A G + QQ Q L +VQA NP +LQ ++QE+ + NP L +L+ ++ L L
Sbjct: 216 APGG------DGQQAQ-LAELVQAAQENPALLQSLIQEIAQSNPTLAQLLAQNPQALLDL 268
Query: 324 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
++ EG EG+ Q Q + +T E+ EA+ RLEA+GF R + + AC NEEL
Sbjct: 269 LS--GEGAEGDF--QDEDGPGQVIHLTEEQAEAVARLEALGFSREMSAQALLACEGNEEL 324
Query: 384 AANYLLDHMHEF 395
AANYL + +
Sbjct: 325 AANYLFEQQEDL 336
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
+V +KTL+ F++ V+ D ++ +K+ IE QG + + Q LI GK+L D T+E
Sbjct: 3 EVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG---FAVNTQKLIFSGKILADDRTIES 59
Query: 62 NKVAENSFVVVMLTK 76
++ E F+VVM++K
Sbjct: 60 LQIKEKDFLVVMVSK 74
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 76/100 (76%), Gaps = 12/100 (12%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
++ +D+YGQAASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+
Sbjct: 155 YTEADIYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYT 214
Query: 208 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 247
G+PEQ A ASA QA + PA QA PTSG
Sbjct: 215 GLPEQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 123/234 (52%), Gaps = 51/234 (21%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVP 216
S+L+ G LEA +++I MG ++R V++AL+AAY NPERAV+YL SG IP++
Sbjct: 128 GSDLLQGPELEAKIKEIESMG---FERPKVLQALKAAYYNPERAVDYLLSGNIPKE---- 180
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
P+Q Q+ PL QGL G L L
Sbjct: 181 --------------PSQQQS---------------PL----QGL----QGPGVEQLAQLA 203
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ QFQ + ++ NP +LQP++Q+L + NP + RL+Q++ FL+L+ E G L
Sbjct: 204 QNPQFQHIAQAIRQNPALLQPVMQQLAQTNPDVARLLQQNPQAFLQLLLAASENEGGQTL 263
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
P A+ VTPEE+ I+ + +MGFD+ LE + C+KN+ELA NYL +
Sbjct: 264 P------PNAIQVTPEEKADIDDIISMGFDKNDALEAYITCDKNKELAINYLFE 311
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 1 MKVFVKTLKGTH-FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTT 58
MK+ +KTLKGT F++ ++ V+++K+ I T + + L+H+GK L +D T
Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKIATEKQKE---KDTIKLVHKGKQLTEDSKT 57
Query: 59 LEENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
L E + +N FV++M + + PQ Q
Sbjct: 58 LGELGIKDNDFVILMFFQKKAEKEDAPQQAQ 88
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 132/272 (48%), Gaps = 56/272 (20%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 219
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P
Sbjct: 78 GFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQ 134
Query: 220 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS- 278
+ +A A T A+QPA DLF Q G NA +G L +
Sbjct: 135 QQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGTTGGAT 181
Query: 279 ---------------QQFQALRTMVQANPQILQPMLQELGKQNPH--------------- 308
+ +LR +V NP+ L P+L+ + + P
Sbjct: 182 DAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSM 241
Query: 309 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERL 360
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL
Sbjct: 242 LLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRL 301
Query: 361 EAMGFDRALVLEVFFACNKNEELAANYLL-DH 391
+GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 302 CELGFERDLVIQVYFACDKNEEAAANILFSDH 333
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 135/241 (56%), Gaps = 17/241 (7%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 213
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 133 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 189
Query: 214 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
A +A + P A T++++P + A + G
Sbjct: 190 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 249
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 250 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 309
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
QL A++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 310 D-----AQLPPGA-HAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFE 363
Query: 391 H 391
Sbjct: 364 Q 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G D A+QQ LI+ GK+L+DV T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 SYNIEEKGFIVCMVSK 73
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 371
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 135/241 (56%), Gaps = 17/241 (7%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 213
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 133 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 189
Query: 214 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
A +A + P A T++++P + A + G
Sbjct: 190 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 249
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 250 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 309
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
QL A++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 310 D-----AQLPPGA-HAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFE 363
Query: 391 H 391
Sbjct: 364 Q 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G D A+QQ LI+ GK+L+DV T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 SYNIEEKGFIVCMVSK 73
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 135/241 (56%), Gaps = 17/241 (7%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 213
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 180 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 236
Query: 214 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
A +A + P A T++++P + A + G
Sbjct: 237 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 296
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 297 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 356
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
QL A++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 357 D-----AQLPPGA-HAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANFLFE 410
Query: 391 H 391
Sbjct: 411 Q 411
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V ++ LK F IE +P + + +K+ I +G D A+QQ LI+ GK+L+DV T+E
Sbjct: 48 LSVLLQDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 104
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 105 SYNIEEKGFIVCMVSK 120
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 131/269 (48%), Gaps = 35/269 (13%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S+ VAG L + ++ ++ MG ++RE ++RALRA++NNP+RAVEYL +GIPE
Sbjct: 164 SSFVAGGALNSAIENMMGMG---FEREQIMRALRASFNNPDRAVEYLLTGIPEHLLAETA 220
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN-----------PLDLFPQGLPNMGSNA 267
AS G A + P PA + PL+LF Q G N
Sbjct: 221 PPASGGPAATPAASNPAPAAPTTPAAAPAARSTTTSGTGGGASGPLNLFAQAAAQSGGNP 280
Query: 268 GAGT------------------LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHL 309
G L+ L+NS FQ ++ NP +LQP++Q+L + NP +
Sbjct: 281 STGAGADAGEGAGGGAGINPAALESLQNSPMFQNTLGAIRENPALLQPLIQQLAQSNPAI 340
Query: 310 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFD 366
+ + + +++ + + +P + +T EE EAI RLEA+GF
Sbjct: 341 AQQLTSNPELLYQILGGLGGDDQDDDGDGEGGGIPPGAHVINITQEEAEAIARLEALGFP 400
Query: 367 RALVLEVFFACNKNEELAANYLLDHMHEF 395
R L +E +F C+KNEELAANYL +++ +
Sbjct: 401 RQLAIEAYFTCDKNEELAANYLFENVGAY 429
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 132/254 (51%), Gaps = 36/254 (14%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L GS + + MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 104 SGLAMGSERAEAIANMEAMG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPESIQQEQQ 160
Query: 219 AR--------ASAGGQAGNPPAQTQ-----AQQPAAPAPTSGPNANPLDLFPQGLPNMGS 265
+ +A G+ AQ+ APA P A QG
Sbjct: 161 QQRANPPQAAPAAAAPTGDDDGSVNLFDLAAQRRGAPASGGSPAAATAAAAAQG------ 214
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+
Sbjct: 215 --DLGNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLG 272
Query: 326 EPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382
E + +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEE
Sbjct: 273 EDADDD---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEE 323
Query: 383 LAANYLLDHMHEFE 396
LAAN+L D + E
Sbjct: 324 LAANFLFDQPEDDE 337
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 179/428 (41%), Gaps = 81/428 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K + ++++ + VK+ + D SQ LI GKVLKD ++E
Sbjct: 2 VSVTFKNFKKEKYPLDLESSQSIVAVKEALSEKLSCD---PSQIKLIFSGKVLKDGDSVE 58
Query: 61 ENKVAENSFVVVML-------TKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHL 113
+ + V+ M+ TKV Q + + P P NQ
Sbjct: 59 SCNFKDGNEVIFMVSAKKATATKVTESSAPKAQSEETPSESTPATSTQ---PETNQNETT 115
Query: 114 RLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQ 173
+ + N V GS AT+++
Sbjct: 116 EPATNSSSENTEAPN--------------------------AGTDDGFVVGSERNATIER 149
Query: 174 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 233
I++MG ++R V RALRAA+NNP+RAVEYL GIPE T P + S +A +
Sbjct: 150 IMEMG---YERAEVERALRAAFNNPDRAVEYLLMGIPE-TLRPQEGQTSQEHEADVDMNE 205
Query: 234 TQAQQPAAPAPTSGPNANPLDLFPQG-----LPNMGSNAGAGTLDFLRNS---------- 278
++ + A P DLF Q P+ AG T + ++
Sbjct: 206 EESTEGNAEPPAED------DLFAQAARDSATPSAAQTAGGTTSESAGSATGGPPGSIGL 259
Query: 279 --QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG------ 330
+ ALR +V NP+ L P+L+ L + P L I + F+ ++ E V
Sbjct: 260 TMEDLLALRQVVSGNPEALAPLLENLSNRYPQLREQIMANPEVFVSMLLEAVGDNLQGAM 319
Query: 331 -------GEGNVL-GQLASAMPQA-VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
GEG+ + G A A +T++PE+ +AI RL +GF+R LV++V+FAC+KNE
Sbjct: 320 DFEAIAEGEGDTVEGADGFAEENAPITLSPEDEQAISRLCELGFERTLVIQVYFACDKNE 379
Query: 382 ELAANYLL 389
E+AAN L
Sbjct: 380 EIAANMLF 387
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 133/268 (49%), Gaps = 37/268 (13%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D + S L GS + + MG ++R + A+RAA+NNP+RAVEYL +G
Sbjct: 102 ADAGSEEPSGLAMGSQRTEAIANMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNG-- 156
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA- 269
+P R + P A A A G ++LF + G+NA
Sbjct: 157 ----IPDNIRQEQQQREAAPAAHAAQPSQPAAAAPQGGEEGGVNLFDLAAQHGGTNARGG 212
Query: 270 ---------------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 308
G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP
Sbjct: 213 SGGNEAAAAAAAAAAGQGGDLGNLDFLRHNAQFQQLRQIVQQQPQMLEPILQQLGAGNPQ 272
Query: 309 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 368
L LI + FL+L+ E + G QA++VT EER+AIERL +GFDR
Sbjct: 273 LAELIASNPDQFLQLLGEYADDDVPLPPGA------QAISVTEEERDAIERLCRLGFDRD 326
Query: 369 LVLEVFFACNKNEELAANYLLDHMHEFE 396
++ +FAC+KNEELAAN+L D + E
Sbjct: 327 AAIQAYFACDKNEELAANFLFDQPEDDE 354
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 128/258 (49%), Gaps = 35/258 (13%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ----TAVP 216
V GS + TVQ+I++MG +DRE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 135 FVTGSRRDETVQRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPEHLQQTQQPQ 191
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------G 270
+ Q P ++ + P A+ DLF Q + G G G
Sbjct: 192 QQQQQQQQQQQQPEPQAQESHETQQPQEHEEQQASSDDLFAQAAASAGGEEGGDSARAPG 251
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
T+ + +LR +V NP+ L P+L+ L + P L I + F+ ++ E V G
Sbjct: 252 TIGL--TMEDLLSLRQVVTGNPEALPPLLESLSTRYPELREQIMTNPEMFISMLLEAVGG 309
Query: 331 G--EGNVLGQL-----------------ASAMPQAVTVTPEEREAIERLEAMGFDRALVL 371
EG + G A PQ + ++P+++EAI RL +GF+R LV+
Sbjct: 310 SLPEGIMEGDAGMEAGAEGALAGADVEGAEQAPQ-LEISPQDQEAISRLCELGFERTLVV 368
Query: 372 EVFFACNKNEELAANYLL 389
+V+FAC+KNEE+AAN L
Sbjct: 369 QVYFACDKNEEIAANMLF 386
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 133/267 (49%), Gaps = 49/267 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF---------------PQGLP 261
AS + G+ ++QPA A A L + P P
Sbjct: 204 ----ASPEPEHGSVQESQVSEQPATEAGGCARAACALQMHSPCAFAFAVCFTWRKPSASP 259
Query: 262 NMGSNAGAGTLD-FLRNSQQFQALRTMVQANPQILQ-PMLQELGKQNPH-LMRLIQEHQT 318
+ ++ A FL QF+ + + Q + P L PH L + I HQ
Sbjct: 260 ILQASPPALVCSSFLARHSQFKGCDDLGRGGDQGCELPCL-------PHPLPQQISRHQE 312
Query: 319 DFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALV 370
F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +LV
Sbjct: 313 QFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLV 371
Query: 371 LEVFFACNKNEELAANYLLDHMHEFED 397
++ +FAC KNE LAAN+LL F+D
Sbjct: 372 IQAYFACEKNENLAANFLLS--QNFDD 396
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 113/236 (47%), Gaps = 51/236 (21%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
Q +S+ G+ LEAT++ I DMG + R+ V+RALR +NN ERA+EYL SG
Sbjct: 152 QQSSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG------- 201
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
N PA + G NP + L
Sbjct: 202 -------------NIPAANDPEDEEEMEGGGGSGDNPFEA-------------------L 229
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 335
RN F LR + NP I+ +LQ+L + NP L+R IQE+ +F+RL
Sbjct: 230 RNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQG--------D 281
Query: 336 LGQLASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 390
+ + VT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 282 GNPGGNPGQFTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ F+V+M+ K
Sbjct: 58 SYNITDSGFIVMMIKK 73
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 113/236 (47%), Gaps = 51/236 (21%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
Q +S+ G+ LEAT++ I DMG + R+ V+RALR +NN ERA+EYL SG
Sbjct: 151 QQSSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG------- 200
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
N PA + G NP + L
Sbjct: 201 -------------NIPAANDPEDEEEMEGGGGSGDNPFEA-------------------L 228
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 335
RN F LR + NP I+ +LQ+L + NP L+R IQE+ +F+RL G
Sbjct: 229 RNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQGDGNPGGNPG 288
Query: 336 LGQLASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 390
L VT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 289 QFTLQ--------VTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 336
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQT---PSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ F+ +M+ K
Sbjct: 58 SYNITDSGFIXMMIKK 73
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 49/239 (20%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPP 217
S LV G+ E + +I+ MG ++R VIRA+RA++NNP+RAVEYL SG IP
Sbjct: 246 SALVTGAEYERAISEIVGMG---FERSMVIRAMRASFNNPDRAVEYLLSGNIPNAV---- 298
Query: 218 VARASAGGQAG-NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
V AGG+ + P + A+ +P+S + L PQ
Sbjct: 299 VREQPAGGRERVDTPGD---EHSASESPSSEDPISALASLPQ------------------ 337
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP--------- 327
FQ +R +VQANP++L ++Q++G N L+RLIQE++ FL +N P
Sbjct: 338 ----FQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAPISQDAGEPE 393
Query: 328 -VEGGEGNVLGQLASAMPQAV--TVTPEEREAIERLEAMGFDRALVLEV---FFACNKN 380
+E E G + P+ + T+T EER AIERL+A+GF LV++V F N+N
Sbjct: 394 GIESSETTTPGNVRQGEPRQIILTMTQEERAAIERLQALGFPEELVIQVNEGIFVLNRN 452
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73
+VSDVKK IE +G++ + AS Q LIH GKV++D TL++ KV + F+VVM
Sbjct: 136 QVSDVKKKIEAEKGNE-FSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVM 186
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 121/437 (27%), Positives = 182/437 (41%), Gaps = 99/437 (22%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + + SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQSTSCE---ESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLT--KVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRL------HLRLLH 117
+ VV M++ K + P P + P Q
Sbjct: 64 DGDQVVFMISQKKSTKTKVTEPPAAPETATTVPAGE-----PSTEQATASADAPTAPAAE 118
Query: 118 QLWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDM 177
+L + S N Q SVS V G+ T+++I++M
Sbjct: 119 ELQPQEEPSSNTE---------------QAESVS------TPGFVVGTQRNETIERIMEM 157
Query: 178 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQA 236
G + RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A
Sbjct: 158 G---YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEPQQQAVAPTEQPPTTATTA 213
Query: 237 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------GTLDFLRNS 278
+QPA DLF Q G N + G++
Sbjct: 214 EQPAED-----------DLFAQAA--QGGNTSSGALGSAGGAADAAQGGPPGSIGL--TV 258
Query: 279 QQFQALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQEHQTDFLRL 323
+ +LR +V NP+ L P+L+ + + P L+ + ++ D +
Sbjct: 259 EDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEG 318
Query: 324 INEPVEGGEGNVLGQLASAMPQ--------AVTVTPEEREAIERLEAMGFDRALVLEVFF 375
++ VEG + V G+ A+A P+ V TPE+ +AI RL +GF+R LV++V+F
Sbjct: 319 ADDMVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYF 378
Query: 376 ACNKNEELAANYLL-DH 391
AC+KNEE AAN L DH
Sbjct: 379 ACDKNEEAAANILFSDH 395
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 137/289 (47%), Gaps = 68/289 (23%)
Query: 146 QLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 205
Q+ SVS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL
Sbjct: 132 QVESVS------TPGFVVGTQRNETIERIMEMG---YPREEVERALRAAFNNPDRAVEYL 182
Query: 206 YSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
GIPE PP + A PP T A+QPA DLF Q G
Sbjct: 183 LMGIPENLR-PPEQQQQAVAPTEQPPTTATTAEQPAED-----------DLFAQAA--QG 228
Query: 265 SNAGA------------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQN 306
N + G++ + +LR +V NP+ L P+L+ + +
Sbjct: 229 GNTSSGALGSAGGAADAAQGGPPGSIGL--TVEDLLSLRQVVSGNPEALAPLLENISARY 286
Query: 307 PH---------------LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ------ 345
P L+ + ++ D + ++ VEG + V G+ A+A P+
Sbjct: 287 PQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVAGEGAAAGPEQAEGEG 346
Query: 346 --AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 391
V TPE+ +AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 347 SFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 395
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 121/242 (50%), Gaps = 40/242 (16%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVP 216
AS++V G+ LEA + I MG ++R VI+AL+AAYNNPERAVEYL SG IP + A
Sbjct: 122 ASDMVMGAELEAKIADIESMG---FERSKVIQALKAAYNNPERAVEYLLSGHIPSRPAFE 178
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
+ Q G + N+G G L L
Sbjct: 179 QPPQQPQQPQQGGVLGEEGVG------------------------NLG---GLEELQQLA 211
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ QFQ + ++ NP +LQP++ +L + NP L L+Q++ FL+L+ + GGE +
Sbjct: 212 QNPQFQQIAMAIRQNPALLQPIMLQLAQSNPQLATLLQQNPQAFLQLLMQAT-GGEQCIF 270
Query: 337 GQ--------LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
A+ VTPEE+ I+ + ++GFD+ LE + +C+KN+ELA NYL
Sbjct: 271 FDNVILIFFFFVEVSRNAIQVTPEEKADIDEIVSLGFDKNDALEAYISCDKNKELAINYL 330
Query: 389 LD 390
D
Sbjct: 331 FD 332
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 147/259 (56%), Gaps = 39/259 (15%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS---------GI 209
S L+ GS E + Q++ MG ++RE + RA+RAA+ NP+RA+EYL + GI
Sbjct: 138 SALLTGSQSEEVINQMMSMG---FEREQINRAMRAAFFNPDRAIEYLLNLLISAFAIKGI 194
Query: 210 PEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
PE R++A A A A AP TSG + P++LF GA
Sbjct: 195 PENIQQEQQQRSAATTPA----APQAAAASGAPPATSGED-EPVNLFEAAAQAGEGRGGA 249
Query: 270 G--------TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
G +LDFLRN FQ LR +VQ PQ+L+P+LQ++G+ NP + +LI +++ FL
Sbjct: 250 GGASGGEPQSLDFLRNHPAFQQLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFL 309
Query: 322 RLINEPVEGGEGNVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACN 378
+L++E + +A+P T VT EER+AIERL +GF R LV++ +FAC+
Sbjct: 310 QLLSE-----------EDDAALPPGTTQIHVTEEERDAIERLCRLGFPRDLVIQAYFACD 358
Query: 379 KNEELAANYLLDHMHEFED 397
KNEELAANYL ++ + +D
Sbjct: 359 KNEELAANYLFENSDDGDD 377
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 FYNIEEKGFIVCMVSK 73
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 42/252 (16%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
G A S LV G V+ I++MG ++R V RALRA++NNP AV+YL GIP
Sbjct: 161 GSAESLLVMGEEFNRMVENIMEMG---YERSQVERALRASFNNPYTAVQYLVDGIPPNLE 217
Query: 215 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 274
P Q +Q A + P+ +PL+ F
Sbjct: 218 EP-------AAQPAQGGDGGGEEQVVAEG-EADPDEDPLN-------------------F 250
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
LR+ QF+ +R M+++NP +L ++++G+ NP L+++IQ++Q F+R+ +
Sbjct: 251 LRSQPQFEQMRQMIRSNPSLLDAFIRQIGQTNPQLLQVIQQNQEAFVRMTERRGQFWRWK 310
Query: 335 ---------VLGQLASAMP--QAVTVTPEEREAIERLEAMG-FDRALVLEVFFACNKNEE 382
G A P A+ V+P++R+AIERL+A+G F +V++ +FAC KNE
Sbjct: 311 HSGGSGNQGGDGSGGRAAPGQNAILVSPQDRDAIERLKALGNFPEDVVIQAYFACEKNEN 370
Query: 383 LAANYLLDHMHE 394
LAA +L +
Sbjct: 371 LAAEFLFSQTWD 382
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
+K L+ F +E++ V +K+ +E +G D YPA Q LI+ GK+ +D TTLE +
Sbjct: 6 LKNLQQQTFTVEIELSATVKALKEKVEKEKGGD-YPAVGQKLIYAGKIPQDDTTLESYNI 64
Query: 65 AENSFVVVMLTK 76
+ F+V+M+TK
Sbjct: 65 DDKKFLVIMVTK 76
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 87/136 (63%), Gaps = 15/136 (11%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 328
L FLR+ QFQ +R ++Q NP +L +LQ++G+ NP L++ I +HQ F+R++NEPV
Sbjct: 124 LAFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPP 183
Query: 329 -------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
+ G N + Q P V V+P++REAIERL+A+GF +V++ +FAC KNE
Sbjct: 184 APGAAVEDSGAENPMPQ---PPPSVVQVSPQDREAIERLKALGFPEHMVIQAYFACEKNE 240
Query: 382 ELAANYLLDHMHEFED 397
LAAN+LL F+D
Sbjct: 241 NLAANFLLS--QNFDD 254
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%), Gaps = 3/45 (6%)
Query: 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+ E+TVQ I+DMG ++R+ V +ALRA+++N ERAVEYL +GIP
Sbjct: 65 DFESTVQSIMDMG---YNRQQVEQALRASFSNRERAVEYLITGIP 106
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 138/270 (51%), Gaps = 44/270 (16%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
+++ V G+ TV++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 160 SSAGFVTGTQRNETVERIMEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPENLQQQ 216
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPL------DLFPQ---GLPNMGS-- 265
+ QA Q A + +A A +G +A+ DLF Q G N GS
Sbjct: 217 HQQQQQQPTQAS---PQNIANEGSATATATGDDAHAEEPPAEDDLFAQAAQGSGNAGSAG 273
Query: 266 -----NAGAGTLDFLR-NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 319
+ G GT + Q +LR V +P+ L +L+ L + P L I +
Sbjct: 274 SAVGGSTGEGTPGSIGLTIQDLLSLRQAVSGDPESLSSLLENLSTRYPQLREQIMSNPQT 333
Query: 320 FLRLINEPVEG--------------------GEGNVLGQLASAMPQAVTVTPEEREAIER 359
F+ ++ E V G+ + +G+ ASA P + +TPE+ +AI R
Sbjct: 334 FISMLLEAVGDNLQSLEGLGDIGGDLGEINEGDNDTMGE-ASAAPPTIQLTPEDEQAISR 392
Query: 360 LEAMGFDRALVLEVFFACNKNEELAANYLL 389
L +GF+R+LV++V+FAC+KNEE+AAN L
Sbjct: 393 LCELGFERSLVIQVYFACDKNEEIAANMLF 422
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K ++++P + + DVK + + + SQ +I+ GKVL+D T+E
Sbjct: 2 VNVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACE---ESQIKIIYSGKVLQDGQTVE 58
Query: 61 ENKVAENSFVVVMLTK 76
E ++ E ++ M++K
Sbjct: 59 ECQLKEGDQIIFMISK 74
>gi|345327424|ref|XP_003431168.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 182
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%), Gaps = 8/130 (6%)
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 46 GGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 105
Query: 328 VE--------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
V+ G + + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 106 VQESGGQGGGGSGSGGVAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 165
Query: 380 NEELAANYLL 389
NE LAAN+LL
Sbjct: 166 NENLAANFLL 175
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 26 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 85
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 247
Q A ASA QA + PA QA PTSG
Sbjct: 86 GQ------AEASAVVQALSVPAAVQAF------PTSG 110
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 180/425 (42%), Gaps = 71/425 (16%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + + SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQTASCE---ESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLWHRHNL 125
+ VV M+++ + + K+ + P + + +
Sbjct: 64 DGDQVVFMISQ--------------KRSTKTKVTEPPIAPETAATTN-PVRDDSTEPAST 108
Query: 126 SLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAAS-NLVAGSNLEATVQQILDMGGGSWDR 184
S + + S ++ G A++ V G+ T+++I++MG + R
Sbjct: 109 STDAPTAETSTAAEGSQPQEEQTSTTEPAGSASTPGFVVGTQRNETIERIMEMG---YPR 165
Query: 185 ETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAP 244
E V RALRAA+NNP+RAVEYL GIPE P + + A T +QPA
Sbjct: 166 EEVERALRAAFNNPDRAVEYLLMGIPENLRQPDPQQQAVAANEQPATAATTTEQPAED-- 223
Query: 245 TSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQ-------------FQALRTMVQA 290
DLF Q +++GA G++ ++ Q +LR +V
Sbjct: 224 ---------DLFAQAAQGGNTSSGALGSVGSAADAAQGGPPGSIGLTVEDLLSLRQVVSG 274
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL-------------- 336
NP+ L P+L+ + + P L I + F+ ++ E V +V+
Sbjct: 275 NPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADEMVEGEEVEV 334
Query: 337 ---------GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
GQ V TPE+ +AI RL +GF+R LV++V+FAC+KNEE AAN
Sbjct: 335 AGESSTAGPGQSEGESSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANI 394
Query: 388 LL-DH 391
L DH
Sbjct: 395 LFSDH 399
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 122/267 (45%), Gaps = 48/267 (17%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE------ 211
S G + EAT+Q I++MG ++R + ALRAA+NNP RAVEYL +GIPE
Sbjct: 123 GSAFAQGDDREATIQNIMEMG---YERPQIEEALRAAFNNPHRAVEYLLTGIPESLQRHA 179
Query: 212 -QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
Q+ P+ ++ T + G +LF G
Sbjct: 180 DQSTSAPIGESTTN--------TTNDHEEEHEHDHEGEEGQGENLFEAAAAAAAQGEGGN 231
Query: 271 TL----------DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 320
T D L Q + LRT +Q NP+++QP+L++L NP + LIQ+ F
Sbjct: 232 TTSGAGGAEAGADDLGEDNQMRLLRTALQTNPELIQPLLEQLAASNPQVAALIQQDPEGF 291
Query: 321 LRLINEPVEGGEGNVLG-------------QLASAMPQAVTV--TPEEREAIERLEAMGF 365
+R G G+ +G P+ V + T ++ AI RL +GF
Sbjct: 292 IRSFL-----GSGDDMGFDFEEGEGEGVEGAGQGNEPETVRIALTEQDESAINRLCELGF 346
Query: 366 DRALVLEVFFACNKNEELAANYLLDHM 392
DR LV++V+ AC+KNEE+AA+ L M
Sbjct: 347 DRNLVIQVYMACDKNEEVAADILFRDM 373
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV D V K+ + + + +V SQ ++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQKIPIEVDLSDTVLATKEKLASEKDCEV---SQLKFVYSGKVLQDEKTLE 57
Query: 61 ENKVAENSFVVVMLTKVIR 79
K+ E ++ M++K +
Sbjct: 58 SFKIKEGDSIIFMISKAKK 76
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 89/137 (64%), Gaps = 17/137 (12%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 328
L FLR+ QFQ +R ++Q NP +L +LQ++G+ NP L++ I +HQ F+R++NEPV
Sbjct: 196 LSFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPP 255
Query: 329 -------EGGEGNVLGQLASAMPQAVT-VTPEEREAIERLEAMGFDRALVLEVFFACNKN 380
+ G N + Q PQ+V V+P++REAIERL+A+GF +V++ +FAC KN
Sbjct: 256 ATGAVIQDSGVDNPIPQ----QPQSVVQVSPQDREAIERLKALGFPEHMVVQAYFACEKN 311
Query: 381 EELAANYLLDHMHEFED 397
E LAAN+LL F+D
Sbjct: 312 ENLAANFLLS--QNFDD 326
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D Y A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQLSFQIEIDPEETVKALKLKIEVEKGKD-YAADYQRLIYAGKILLDDNKIS 59
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V+M+TK
Sbjct: 60 TYNIDEKKFIVIMVTK 75
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 3/54 (5%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
AA + A + E+TVQ I+DMG ++R+ V +ALRA+++N ERAVEYL +GIP
Sbjct: 128 AAPVISAELDFESTVQSIMDMG---YNRQQVEQALRASFSNRERAVEYLITGIP 178
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 406
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 134/277 (48%), Gaps = 60/277 (21%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQ------ 212
+ V G L+A + +++MG ++R+ VIRALRA++NNP+RAVEYL SG IP
Sbjct: 146 SFVTGPALQAAIDGMVEMG---FERDQVIRALRASFNNPDRAVEYLMSGNIPSVEGTAPA 202
Query: 213 ------------------------------TAVPPVARASAGGQAGNPPAQTQA---QQP 239
+ PP ASAGG A N A +A +
Sbjct: 203 APAPAAPSTPSAAAAPAQPAAPSEPAAQPVASAPP---ASAGGSADNLFAAAEAAMNRDR 259
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGS--NAGAGTLDFLRNSQQFQALRTMVQANPQILQP 297
PA P GLP AGAG + Q A+R MVQ NP ++QP
Sbjct: 260 GVPAAAGAP----------GLPGAPGLPGAGAGMPGGMGGGDQLSAIRQMVQQNPAMIQP 309
Query: 298 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 357
+LQ++ ++P L +LI ++ L+ G+ + M V +T EE A+
Sbjct: 310 LLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGEGPVM--RVNLTQEEAAAV 367
Query: 358 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 368 ERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 404
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ KT++ F ++ + D V+D+KK I+ Q +P Q LI+ GK+L D +++E
Sbjct: 2 VKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 58
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+VVM+++
Sbjct: 59 SLKIKEKDFLVVMVSR 74
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 131/275 (47%), Gaps = 56/275 (20%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQ------ 212
+ V G L+A + +++MG ++R+ VIRALRA++NNP+RAVEYL SG IP
Sbjct: 144 SFVTGPALQAAIDGMVEMG---FERDQVIRALRASFNNPDRAVEYLMSGNIPSVEGTAPA 200
Query: 213 ------------------------------TAVPPVARASAGGQAGNPPAQTQA---QQP 239
+ PP ASAGG A N A +A +
Sbjct: 201 APAPAAPSTPSAAAAPAQPAAPSEPAAQPVASAPP---ASAGGSADNLFAAAEAAMNRDR 257
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
PA P P G P + + Q A+R MVQ NP ++QP+L
Sbjct: 258 GVPAAAGAPG------LP-GAPGLPGAGAG-MPGGMGGGDQLSAIRQMVQQNPAMIQPLL 309
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 359
Q++ ++P L +LI ++ L+ G+ + M V +T EE A+ER
Sbjct: 310 QQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGEGPVM--RVNLTQEEAAAVER 367
Query: 360 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
LEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 368 LEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 402
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ KT++ F ++ + D V+D+KK I+ Q +P Q LI+ GK+L D +++E
Sbjct: 2 VKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 58
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+VVM+++
Sbjct: 59 SLKIKEKDFLVVMVSR 74
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/100 (63%), Positives = 74/100 (74%), Gaps = 12/100 (12%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
++ +D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+
Sbjct: 155 YTEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYT 214
Query: 208 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 247
G+P Q A ASA QA + PA QA PTSG
Sbjct: 215 GLPGQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 8 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 67
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 247
Q A ASA QA + PA QA PTSG
Sbjct: 68 GQ------AEASAVVQALSVPAAVQAF------PTSG 92
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 121/258 (46%), Gaps = 48/258 (18%)
Query: 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARAS 222
G E ++ I++MG ++R V ALRAA+NNP RAVEYL +GIPE P P AS
Sbjct: 128 GDERENNIRNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESLQAPQPNYSAS 184
Query: 223 AGGQAGNPPAQTQAQQPAAPAPTS----GPNANPLDLFPQGLPNM-------GSNAGAGT 271
+GG QPA A ++ N + +LF +A G
Sbjct: 185 SGGA-----------QPAVEAESTHNEDEENEHGENLFEAAAAAAAQEGGAGDQDAAEGA 233
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
D L Q + LR +Q NP+++QP+L++L NP + LIQ+ F+R G
Sbjct: 234 GDDLNEENQMRLLRAALQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIRSF-----LG 288
Query: 332 EGNVLG---------------QLASAMPQAVTV--TPEEREAIERLEAMGFDRALVLEVF 374
G L P V + T ++ AI RL +GFDR LV++V+
Sbjct: 289 SGEDLDFEFEEGEGDAEGGESGGQGEQPGTVRIELTEQDESAINRLCELGFDRNLVIQVY 348
Query: 375 FACNKNEELAANYLLDHM 392
AC+KNEE+AA+ L M
Sbjct: 349 MACDKNEEVAADILFRDM 366
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K I+V+ D V K+ + + + ASQ ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPIDVELTDTVLSTKEKLAAEKDCE---ASQLKFVYSGKVLPDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKVIR 79
K+ E ++ M++K +
Sbjct: 58 SLKIKEGDAIIFMISKTKK 76
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 133/251 (52%), Gaps = 41/251 (16%)
Query: 148 HSVSD-VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206
H+VS Y +S LV GS LE ++ +I +MG ++R V RA+ AA+NNP+RAVE+L
Sbjct: 116 HNVSQQTYETVSSKLVMGSELEQSINRICEMG---FERPLVERAMAAAFNNPDRAVEFLS 172
Query: 207 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
+G + +P + + P G +
Sbjct: 173 TGNIPVSNMPNIDHQNVTA-----------------------------------PEHGHS 197
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
G L +++ F+ L VQ++PQ+LQ +L+ LG+ +P L++ I + Q +F+ L+N
Sbjct: 198 GGEDVLQMIQSHPMFEQLSQAVQSDPQLLQQLLESLGQTHPELLQTIIQRQDEFMELLNS 257
Query: 327 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
G E + P +++TP E E+IERLE +GF R V+E + AC+KNEELAAN
Sbjct: 258 GA-GAEADPYSN-TEHNPNIISLTPVEMESIERLEGLGFSRPAVIEAYLACDKNEELAAN 315
Query: 387 YLLDHMHEFED 397
YLL++ H+F++
Sbjct: 316 YLLENSHDFQE 326
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 120/237 (50%), Gaps = 45/237 (18%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
V ++ MG + V +AL AA+NNPERAVEYL +GIPE+ +A+ + +A
Sbjct: 138 VANLMAMG---FPESQVKQALSAAFNNPERAVEYLMNGIPEEL----LAQMTTTPEAAAA 190
Query: 231 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
A T A AAP T+ S + TL+ +RN QFQ +RT+++
Sbjct: 191 SAGTTADASAAPTVTAP-----------------SRSVGSTLEQIRNEPQFQQIRTLIRN 233
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT-- 348
NPQ+L +Q+L +NP I +Q +F+ +INEP GE G ++ T
Sbjct: 234 NPQLLSQFIQQLQIENPEAFAAISANQQEFINMINEP---GEAQPAGDDSAEAAAPATPG 290
Query: 349 ----------------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
+T E+R +IERL+ +GF VL+ FFAC+KNE AAN+LL
Sbjct: 291 DGPRVRQTEDGRVMLEITAEDRASIERLKELGFPEQAVLQAFFACDKNENDAANFLL 347
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VYPASQQMLIHQGKVLKDVT 57
M++ VKTL+ F++E +P V D K IE SD VY A Q LI+QGK+L+D
Sbjct: 1 MQLTVKTLQQKAFKVEAEPSILVKDFKALIEEAGKSDHGGVYKAEAQKLIYQGKILEDEK 60
Query: 58 TLEENKVAENSFVVVMLT 75
+EE ++ E F+V+M+T
Sbjct: 61 KIEEYQITEKGFIVLMVT 78
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 125/258 (48%), Gaps = 39/258 (15%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G E V +I MG ++ E VI A RA++ N +RAVE L G
Sbjct: 174 SWSNLFEDATSALVTGQPYENMVTEITPMG---YEXEQVIAAPRASFKNLDRAVECLVMG 230
Query: 209 IP---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 265
IP Q V P AS G P S A +
Sbjct: 231 IPGVKXQVVVDPHQAASTG------------------VPQSSTLAAVAAT---TTATTTT 269
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
++G L+FL N QFQ +R ++Q N +L +LQ +G +NP L++ I +H+ F++++N
Sbjct: 270 SSGXHPLEFLWNQPQFQQMRQIIQQNTSLLPALLQXIGGENPQLLQQISQHKEHFIQMLN 329
Query: 326 EPVEGGE---------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
EPV + + + + + VTP+E+EAIER G LV++ +FA
Sbjct: 330 EPVXEADGRGGGGGGGSGGIAEPGNGPMNYIQVTPQEKEAIER---XGIPEGLVIQAYFA 386
Query: 377 CNKNEELAANYLLDHMHE 394
C KN+ LAA++LL +
Sbjct: 387 CEKNKNLAADFLLQQTFD 404
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ + + P + Q LI+ G++L D L+
Sbjct: 1 MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALK 60
Query: 61 ENKVAENSFVVVML 74
E K+ E FVVVM+
Sbjct: 61 EYKIDEKIFVVVMV 74
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 134/264 (50%), Gaps = 39/264 (14%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
G+ S L G+ + + MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 133 GETGSGLAMGAERAEAITNMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQ 189
Query: 215 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA----- 269
AR +A AG A A G N DL Q +G+
Sbjct: 190 QEQHARQAAA--AGPTQATPAAPAAQEGGEDDG-GVNLFDLAAQAGGGGRGGSGSGSAAA 246
Query: 270 ------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 317
G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI +
Sbjct: 247 AAAGATQGGADLGNLDFLRHNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANP 306
Query: 318 TDFLRLINEPVEGGEGNVLGQLASAMP-----QAVTVTPEEREAIERLEAMGFDRALVLE 372
FL L+ E + +P QA++VT EER+AIERL +GFDR ++
Sbjct: 307 DQFLSLLGESAD-----------DDVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQ 355
Query: 373 VFFACNKNEELAANYLLDHMHEFE 396
+FAC+KNEELAAN+L D + E
Sbjct: 356 AYFACDKNEELAANFLFDQPDDDE 379
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GKVLKDVTTL 59
MKV + LK F +EV+P D +S VK+ I +G D P Q+++ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTDLISAVKEKISGEKGWD--PKHQKLIYSGLGKILKDDETV 58
Query: 60 EENKVAENSFVVVMLTK 76
+ E FVV M+ K
Sbjct: 59 ASYNIEEKGFVVCMVNK 75
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 130/288 (45%), Gaps = 82/288 (28%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
+ A S LV G + V +++ +G + R+ VIRA++A+YNNP RA EYL GIP+
Sbjct: 208 AFHSAESTLVTGEEYQNMVTELMSLG---FPRDKVIRAMQASYNNPNRAAEYLVVGIPDP 264
Query: 213 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 272
P G+ P + Q + + G ++P +L
Sbjct: 265 PPETP----------GDQPPSQPSLQSSQSSSQPGGESSP------------------SL 296
Query: 273 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-EPVEGG 331
+FL QFQ LR + ++P +L LQ LG+ NP L+++I + Q +F+ LIN +P
Sbjct: 297 EFLDQLPQFQQLREAISSDPAMLSQFLQSLGQSNPQLLQIISQRQEEFIALINQQPDAAA 356
Query: 332 EGNVL------------------------GQLASAMP----------------------- 344
+ V GQ +S+ P
Sbjct: 357 QPAVGGGGGGSGRGGSSSSSSLTSAAQPGGQQSSSQPANPPAQQAGGQGGGPGIRMSEEN 416
Query: 345 ---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
+ + PEER+AIERL+ +GF LV++ +FAC+KNE LAAN+LL
Sbjct: 417 PGVAYIELMPEERDAIERLKGLGFPEELVIQAYFACDKNENLAANFLL 464
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F +E++ V ++K IE QG D +PAS Q LI+ GK+L D L
Sbjct: 1 MLIVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKD-FPASGQKLIYAGKILSDDNPLS 59
Query: 61 ENKVAENSFVVVMLTK 76
+ E SFVVVM+TK
Sbjct: 60 SYNIDEKSFVVVMVTK 75
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 205
+ A S LV G + V +++ +G + R+ VIRA++A+YNNP RA EYL
Sbjct: 146 AFHSAESTLVTGEEYQNMVTELMSLG---FPRDKVIRAMQASYNNPNRAAEYL 195
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 127/243 (52%), Gaps = 28/243 (11%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S ++G L++ + + +MG + R+ V+RA+RA+YNN +RAVEYL T +P
Sbjct: 147 STFLSGEALQSAITNMTEMG---FPRDQVLRAMRASYNNADRAVEYLM------TGIPAH 197
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN-PLDLF----------PQGLPNMGSNA 267
A A G A AAP + P N P +LF G N
Sbjct: 198 LEAEAAGPTPPTAAPATQPAAAAPISANVPPPNQPQNLFQATGGVGPAAAGGAAGAPQNP 257
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
L+ LR++ Q Q LR + +PQ+ QP++Q+L QNP + +++ ++ +L+
Sbjct: 258 VHLNLEALRDNPQIQQLRQQLADDPQMAQPLIQQLAMQNPAMAQMLAQNPDALAQLL--- 314
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
G L + V+VT EER+AIERLEA+GF R VLE +FAC+KNEELAANY
Sbjct: 315 -----GVELDEEVPPGAHVVSVTAEERDAIERLEALGFPRQAVLEAYFACDKNEELAANY 369
Query: 388 LLD 390
L +
Sbjct: 370 LFE 372
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KT + F+IE+ D ++ +K I+ QG +P + Q +I+ GK+L + T++
Sbjct: 1 MKITIKTTQQKVFQIEIDTSDTIAVLKDKIQESQG---HPTAAQKIIYSGKILSNDKTID 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V+M++K
Sbjct: 58 SCGIKEKDFLVLMVSK 73
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 36/225 (16%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 227
Query: 208 GIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 263
GIP Q V P AS G AP S +A
Sbjct: 228 GIPGDRESQAVVDPPQAASTG------------------APQS--SAVAAAAATTTATTT 267
Query: 264 GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 323
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+++
Sbjct: 268 TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 327
Query: 324 INEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIER 359
+NEPV+ + + + + VTP+E+EAIER
Sbjct: 328 LNEPVQEAGGQGGGGGGGSGGIAEPGNGPMNYIQVTPQEKEAIER 372
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 129/274 (47%), Gaps = 51/274 (18%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S + ++ V GS + TV++I++MG ++RE V ALRAA+NNP+RAVEYL G
Sbjct: 132 SSGETSSAGSAGFVVGSQRDQTVERIMEMG---YEREQVESALRAAFNNPDRAVEYLLMG 188
Query: 209 IPEQTAVPPVARASAGGQAGNPP-----AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 263
IPE ARA+A + P T A APA DLF Q
Sbjct: 189 IPENLQ----ARAAAPQETAAPSITQDVTTTTASTEDAPAEE--------DLFAQAA--Q 234
Query: 264 GSNAGAGTL----------DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 313
GSN G T Q +LR ++ NP+ L +L+ L + P+L +
Sbjct: 235 GSNTGPNTEGESEHHGPPGSIGLTVQDLLSLRQVISGNPEALTSLLESLSVRYPNLREQM 294
Query: 314 QEHQTDFLRLINEPVEGGEGNVLGQL------------------ASAMPQAVTVTPEERE 355
+ F+ ++ E V + G A +P V +TPE+ +
Sbjct: 295 MNNPQAFISMLLEAVGDNLQGLEGLEGLGEEGHIEEGELEEGEEAHPIPH-VELTPEDEQ 353
Query: 356 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
AI RL +GF+R+LV++V+FAC KNEE+AAN L
Sbjct: 354 AISRLCELGFERSLVIQVYFACEKNEEVAANMLF 387
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 128/267 (47%), Gaps = 51/267 (19%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 219
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P
Sbjct: 141 GFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQ 197
Query: 220 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNS 278
+ +A A T A+QPA DLF Q +++GA GT ++
Sbjct: 198 QQTAAAAEQPSTAATTAEQPAED-----------DLFAQAAQGGNASSGALGTTGGATDA 246
Query: 279 QQ-------------FQALRTMVQANPQILQPMLQELGKQNPH---------------LM 310
Q +LR +V NP+ L P+L+ + + P L+
Sbjct: 247 AQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLL 306
Query: 311 RLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLEA 362
+ ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL
Sbjct: 307 EAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCE 366
Query: 363 MGFDRALVLEVFFACNKNEELAANYLL 389
+GF+R LV++V+FAC+K + Y +
Sbjct: 367 LGFERDLVIQVYFACDKKRRSCSKYSI 393
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 34/255 (13%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L GS E Q+ MG + R + RA+RAA+ NP+RA+EYL +GIP+ +
Sbjct: 139 SALTMGSAAEGAAAQMEAMG---FARTDIDRAMRAAFYNPDRAIEYLLTGIPDN-----I 190
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------- 270
+ + PA T A APA SG + +LF G G
Sbjct: 191 QEQQQQQRQASEPASTGA----APAAPSGGDEPHFNLFEAAAQAGGEGGGRSRGVAGAGA 246
Query: 271 ---------TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
+L+FLR++ FQ LR +VQ P +L+P+LQ++ NP + +I ++ FL
Sbjct: 247 GTAGGEALGSLEFLRSNPHFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQFL 306
Query: 322 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
+L+ E E QA++VT EER+AIERL +GF R V++ +FAC+KNE
Sbjct: 307 QLLGE-----ELEDEEGALPPGAQAISVTEEERDAIERLCRLGFPRDSVIQAYFACDKNE 361
Query: 382 ELAANYLLDHMHEFE 396
ELAAN+L D E E
Sbjct: 362 ELAANFLFDQPEEDE 376
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+V+P + V +VK I +G Y A + +I+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YDAERMKVIYSGKILQDDKTVE 58
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V + +K
Sbjct: 59 SYNIQEKDFLVCLPSK 74
>gi|124802198|ref|XP_001347399.1| DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
gi|23494978|gb|AAN35312.1|AE014830_56 DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
Length = 389
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 133/278 (47%), Gaps = 54/278 (19%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
++ + + A S L+ G L+ ++ I MG +++E V +A+ AYNNP RA++YL +G
Sbjct: 132 NIYNSFNNAESMLLTGDKLKESIDNICAMG---FEKEQVKKAMILAYNNPNRAIDYLTNG 188
Query: 209 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
P + V + ++ P +S P + SN
Sbjct: 189 FPNENVNVNVNENINNESNFSNLLNSE-NNPLLEENSSHP--------------LSSNEE 233
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL------- 321
RNS F A+R M +NPQ L +LQ +G+ +P + I+++QT+FL
Sbjct: 234 T-----FRNSTFFNAIRDMALSNPQRLPELLQMIGRTDPSFLEYIRQNQTEFLAALQNYG 288
Query: 322 RLINEPVEGGEGNV-----------------LGQLASAMPQA----VTVTP---EEREAI 357
IN+ E + N+ +GQ + P + +TP E E+I
Sbjct: 289 NNINDHEEHSDDNLDNADDENAIQNDSFLQDVGQQVLSDPNNENINIPITPLNENEMESI 348
Query: 358 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 395
++LE++GF + + LE F AC+KNEE+AANYL ++M++F
Sbjct: 349 KKLESLGFPKHVALEAFIACDKNEEMAANYLFENMNDF 386
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V P+D + D+KK +E V P+ +Q LI GK+LKD
Sbjct: 1 MKIKVRTLQNNEEEINVDPDDSILDLKKKVEVVLAD--MPSDKQKLIFSGKILKDEDKAT 58
Query: 61 ENKVAENSFVVVMLTKVI 78
+ + +N V+VM+T+ I
Sbjct: 59 D-ILKDNDTVIVMVTRRI 75
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 106/179 (59%), Gaps = 25/179 (13%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+++ +A SNLV G++ +A V +++ MG ++RE V+ ALRA++NNP+RAVEYL +GIP
Sbjct: 79 TNLIDEAVSNLVTGASYDAMVNEMMLMG---YEREQVVAALRASFNNPDRAVEYLLTGIP 135
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP-NMGSN-AG 268
G+ P A A P P SG ++ P+ LP N GS+ +G
Sbjct: 136 --------------GRDPGPAAGLDAVVP----PVSGVHSAPIGGI--SLPANTGSSPSG 175
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
L FLR+ QF +R ++Q N +L +LQE+G++NP L++ I HQ F++++NEP
Sbjct: 176 GNPLSFLRSQPQFHVMRQLIQQNAALLPALLQEIGRENPELLQEISSHQEQFIQMLNEP 234
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 73/110 (66%), Gaps = 13/110 (11%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 210
+ + AASNL++G N++ + Q+++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP
Sbjct: 130 NTHDNAASNLLSGRNVDTIINQLMEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPV 189
Query: 211 -EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ 258
+ AVP GGQ N T + P A SG PN PLDLFPQ
Sbjct: 190 TAEIAVP------IGGQGAN----TTDRAPTGEAGLSGIPNTAPLDLFPQ 229
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 58/74 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVML 74
ENKV E+ F+VVML
Sbjct: 61 ENKVNEDGFLVVML 74
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 130/280 (46%), Gaps = 50/280 (17%)
Query: 157 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 213
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 214 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 269 A--------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 314
G + L + QQ Q LR +Q+NP+++QP+L++L NP + LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 315 EHQTDFLRLINEPVEG--GEGNVLG----------------QLASAMPQAVTV----TPE 352
+ F+R+ + G G GN LG A+ + T+ + +
Sbjct: 252 QDPEAFIRMF---LSGAPGSGNDLGFEFEDESGETGAGGAAAAATGEDEQGTIRIQLSEQ 308
Query: 353 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
+ AI RL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 309 DNNAINRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 348
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 130/280 (46%), Gaps = 50/280 (17%)
Query: 157 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 213
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 214 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 268
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 269 A--------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 314
G + L + QQ Q LR +Q+NP+++QP+L++L NP + LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 315 EHQTDFLRLINEPVEG--GEGNVLG----------------QLASAMPQAVTV----TPE 352
+ F+R+ + G G GN LG A+ + T+ + +
Sbjct: 252 QDPEAFIRMF---LSGAPGSGNDLGFEFEDESGETGAGGAAAAATGEDEQGTIRIQLSEQ 308
Query: 353 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
+ AI RL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 309 DNNAINRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 348
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 136/263 (51%), Gaps = 42/263 (15%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L G +A V + MG + R+ + RA+RAA+ NP+RAVEYL +GIP
Sbjct: 133 SALAMGEQRQAAVANMEAMG---FPRDQIDRAMRAAFFNPDRAVEYLLNGIPASAEQEQR 189
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN--PLDLFPQG----------------- 259
A A+ A N PA Q QP A +G P++LF
Sbjct: 190 AAATPQRPASNQPAPQQQAQPPAQTGNTGATGGDEPVNLFEAAAQAGQRGGVGGNRGTGD 249
Query: 260 --------LPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 311
G A A LDFLRN+ QFQ LR +VQ P +L+P+LQ++ NP L +
Sbjct: 250 LAAALGGGQGGQGGQATANELDFLRNNPQFQQLRQLVQQQPAMLEPILQQVAAGNPQLAQ 309
Query: 312 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRA 368
+I ++ F++L+ E + +V A+P Q + VT EEREAIERL +GF+R
Sbjct: 310 MITQNPEQFMQLL---AEDADDDV------ALPPGAQQIAVTEEEREAIERLCRLGFERD 360
Query: 369 LVLEVFFACNKNEELAANYLLDH 391
L ++ +FAC+KNEELAAN+L D
Sbjct: 361 LAIQAYFACDKNEELAANFLFDQ 383
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + + +K+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFTIDAEPSETIGALKRKISEEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+V M +K
Sbjct: 58 SYKIEEKGFIVCMTSK 73
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 5/125 (4%)
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
LR++ F LRT V P+ L PMLQ+LG+ NP L+++I ++Q +FLR++ EPVEG E +
Sbjct: 242 LRDNPAFAMLRTAVAQEPRSLVPMLQQLGRSNPELVQVINQNQQEFLRMLTEPVEGDEDD 301
Query: 335 VLGQL-----ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
+ L V +T ++ AI RL A+GFDR LE + AC+KNEE+AAN+L
Sbjct: 302 AMAALLGGGEGGEGGMVVELTEDDEAAITRLAALGFDRNACLEAYLACDKNEEMAANFLA 361
Query: 390 DHMHE 394
++M +
Sbjct: 362 ENMFD 366
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q D + + + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFSVEAEESLTIGALKDKVQEAQ-PDCHRDAMK-LVYKGKVLDDGTTVG 58
Query: 61 ENKVAENSFVVVML 74
+N++ E F+VV +
Sbjct: 59 DNQITEQGFIVVFV 72
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 130/243 (53%), Gaps = 37/243 (15%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E + I +M ++R + A+RAA+ NP+RAVEYL +GIPE Q+
Sbjct: 144 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPDRAVEYLLNGIPEHLQ-----------QS 192
Query: 228 GNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQGLPNMGSNAGA----------------G 270
+ P Q A+ A N N DL Q G+ +G+ G
Sbjct: 193 ASAPRQAAQTAAASSAGADDDSNVNLFDLAAQAGRGSGARSGSGADVGTGAAAAAGQDLG 252
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
L++LR + QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L++E G
Sbjct: 253 NLEWLRANAQFQQLRQVVQQQPQMLEPILQQLGASNPQLAQLIAQNPDQFLSLLSE--SG 310
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
G+ + A P A ++VT EER+AIERL +GF + ++ +FAC+KNEELAAN+L
Sbjct: 311 GDDD-----APLPPGAHQISVTEEERDAIERLTRLGFTQDQAIQAYFACDKNEELAANFL 365
Query: 389 LDH 391
D
Sbjct: 366 FDQ 368
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEERGWD---PKHQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV ++ K
Sbjct: 58 SYKIEEKGFVVCVVNK 73
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 49/230 (21%)
Query: 172 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 231
Q++ D+ + + V ALRA++N+PERA+EYL SGIP+ P A A+A G A
Sbjct: 133 QRVRDLMAMGYGEQEVRAALRASFNHPERAIEYLISGIPQNAPQP--ANATASGPA---- 186
Query: 232 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 291
PN P P+ F +R M++ N
Sbjct: 187 ----------------PNLQPWMSDPR----------------------FARVRDMLRQN 208
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQ---LASAMPQA 346
P++L+ +L L + +P I++HQ +FL +IN G GEG+ L + + +A
Sbjct: 209 PELLEVVLSRLAETDPSAFEAIRDHQDEFLSMINGSSAGSVGEGSDLSEDSEMDAASRHQ 268
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+T+T EE A+ERL ++GF R L ++ + AC+KNEELAA+ L + E
Sbjct: 269 ITLTSEEAAAVERLVSLGFHRDLAVQAYLACDKNEELAADILFRQSEDEE 318
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL ++E+ V +K+ + ++ + P Q LI+ G++++D L
Sbjct: 1 MKISIRTLDQRTIKLEMSDSQDVRALKQRLGSMPEVAI-PVESQQLIYGGRIMEDALPLS 59
Query: 61 ENKVAENSFVVVMLTKV 77
+ K+AE+ F+V+M K+
Sbjct: 60 DYKIAEDKFIVLMGKKM 76
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 28/239 (11%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
++S+ +G + EA +Q +++MG ++R + RALRAA+NNP RAVEYL +GIPE
Sbjct: 121 SSSDFASGQDREAAIQNMMEMG---YERPQIERALRAAFNNPHRAVEYLITGIPE----- 172
Query: 217 PVARASAGGQAGNPPAQTQAQ-QPAAPAPTSGPNANPLDLFPQGLPNMG--SNAGAGTLD 273
A +A PP QAQ +PAA A + + + NM + A AG
Sbjct: 173 ------ALTRAEQPP---QAQEEPAAHAEAQTEHEDESNQEANVHENMFDVAEAAAGDEP 223
Query: 274 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 333
+ LR +Q+ P+++Q +LQE+ NP +LI++ F+ + G+
Sbjct: 224 VPAQEDRLALLRAAIQSEPELVQSVLQEIAASNPQAAQLIEQDPEAFISTL-----LGQH 278
Query: 334 NVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
+ G + V ++ + AI RL +GFDR +V++V+ AC++NEE+AA+ L
Sbjct: 279 DDAGYEIEEEEEGVVRVQLSESDESAIRRLCELGFDRDMVVQVYLACDRNEEVAADILF 337
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K LK ++ V+P D V K+ + + DV P SQ ++ GKVL+D T +
Sbjct: 1 MQVTFKDLKKQTVQVSVEPSDLVRVGKEKVAAAR--DVDP-SQLKFVYSGKVLQDDKTFD 57
Query: 61 ENKVAENSFVVVMLTK 76
E KV E ++ M+++
Sbjct: 58 EFKVKEGDSIIFMISQ 73
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 34/252 (13%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L+ G+ E V ++++MG ++R+ V+RALRAA+NNP+RAV+YL SGIPE + +
Sbjct: 151 STLLTGAAYENVVAELMNMG---YERDPVVRALRAAFNNPDRAVDYLLSGIPE-SVLAEA 206
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP---------QGLPNMGSNAGA 269
+ PA + + PA PA T G P G +G +
Sbjct: 207 EAPAPAAAEQPEPAAARTESPATPA-TGGSTTTIAATTPATTPATTAASGTSPLGGQSEE 265
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV- 328
L FLR QFQ +R ++Q NP +L +LQ+LG+ NP L++LI +HQ F++++N PV
Sbjct: 266 DPLAFLREQPQFQQMRQIIQQNPSLLPALLQQLGQSNPQLLQLINQHQEQFIQMLNNPVG 325
Query: 329 ----------------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA---L 369
+ VTP+E+EAIER+ A + + +
Sbjct: 326 GEQQSGGGGGGGGSGGGAPTSGGQVGTGPGGTSYIQVTPQEKEAIERVLAKMYSKCNSDI 385
Query: 370 VLEVFFACNKNE 381
E+ C+ +E
Sbjct: 386 RYELMKKCHVDE 397
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 51/76 (67%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F++E++P V D+K +E V+G D +PA+ Q LI+ G++L D +
Sbjct: 1 MLITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLIS 60
Query: 61 ENKVAENSFVVVMLTK 76
+ ++E +FVVVM+TK
Sbjct: 61 DYNMSEENFVVVMVTK 76
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 127/252 (50%), Gaps = 51/252 (20%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A
Sbjct: 172 QAARALLTRPASEQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRAS 228
Query: 216 -----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
PP A +S G++ + +A + AA TSG +PLD+
Sbjct: 229 AAEVEPPQAGSSGAGRS----SAVEADEGAA---TSGSGGHPLDV--------------- 266
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN----- 325
LRN +F+ LR ++Q P +L +LQ L Q+P L ++++Q + ++
Sbjct: 267 ----LRNLPEFEELRRIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQEYLVHMLTTEEEE 322
Query: 326 ---------EPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
E V+ E + + VTP+E+ AIERL+A+GF LV++ +FA
Sbjct: 323 DGSEGGGGGEGVDNAE---TAETVREDDSYIEVTPQEQAAIERLKALGFPEGLVIQAYFA 379
Query: 377 CNKNEELAANYL 388
C KNE LAA+ L
Sbjct: 380 CEKNEILAASLL 391
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTK 76
++ +
Sbjct: 73 LVAR 76
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum CBS
127.97]
Length = 255
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 28/166 (16%)
Query: 236 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQFQALRTMVQANPQI 294
++ PA P+P G G AG+ G+L+FLRN+ FQ LR +VQ PQ+
Sbjct: 112 SETPATPSPAGG---------------AGETAGSLGSLEFLRNNPHFQQLRQLVQQQPQM 156
Query: 295 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTP 351
L+P+LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT
Sbjct: 157 LEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGTQSISVTE 207
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 208 EERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 253
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 46/271 (16%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
G A+S L G + ++ DMG +D ++ RA+RAA+ NPERA+EYL +G P
Sbjct: 160 TSGIASSGLAVGDEYSLYMNRMRDMG---FDDGSIERAMRAAHYNPERAIEYLCNGFPAN 216
Query: 213 TA--VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
T P+ + + PAQ Q + PA P
Sbjct: 217 TESLTEPLNDEARRPEHQTLPAQAGMDQTSRPAEAVHPELQ---------------QSRS 261
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-- 328
LD +R F LR +Q +P +Q +L EL + NP L+ +IQ +Q DF+ ++NEPV
Sbjct: 262 ELDIIRRLPHFALLRRAIQQDPSQIQSLLAELRRMNPRLLDIIQRNQADFINMLNEPVTD 321
Query: 329 ---------------EGGEGNVL-GQLASAMPQA----VTVTPEEREAIERL----EAMG 364
+ G GN+ G A +M + V+ EE E + +L E MG
Sbjct: 322 EEAGREMRQLRELVAQQGRGNMYAGADAPSMEPTNAIRIEVSQEEAEQLRQLEQMMEPMG 381
Query: 365 FDRALVLEVFFACNKNEELAANYLLDHMHEF 395
R L+V+ +C++N ELAA +L+D++ ++
Sbjct: 382 VSRDTCLQVWLSCDRNTELAAMHLMDNLEDY 412
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 123/239 (51%), Gaps = 45/239 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAV 215
++++ V G+ LE T++ I+DMG + RE VIRALR YNN +RAVE L SG IPE
Sbjct: 148 SSTDFVTGTELENTIKNIVDMG---FQREQVIRALRLGYNNADRAVELLLSGSIPEN--- 201
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
A+ + N +D+ G G + L
Sbjct: 202 -----AADDEEEDN-----------------------MDV---GGGGNDQQGGDNPFEAL 230
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 335
RN F LR + +P I+ +LQ+L + NP L+R I E DF+R+ +G EG
Sbjct: 231 RNHPYFPMLRQAIAQDPNIIPTLLQQLAQSNPELVRQISERPNDFIRIF----QGEEGGN 286
Query: 336 LGQLASAMPQAVT--VTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 391
G + + P T VT EE +AIERL+ + G ++ +V+E +FAC+KNEELAA+YL +
Sbjct: 287 GGGVGGSQPGQFTIQVTREENDAIERLQQLTGLEKQVVIEAYFACDKNEELAASYLFER 345
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + E+ + V D+K +I + + P S Q LI+ GK+L+D TLE
Sbjct: 1 MKLTIKNINKEVYSFELDSDKTVLDLKNSI--FEKYNQIP-SWQTLIYSGKILEDKNTLE 57
Query: 61 ENKVAENSFVVVMLTK 76
K++E F+V+M+ K
Sbjct: 58 SYKISEQGFIVMMIKK 73
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 108 bits (270), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/76 (65%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV+E+ F+VVML+K
Sbjct: 61 DNKVSEDGFLVVMLSK 76
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 117/239 (48%), Gaps = 53/239 (22%)
Query: 165 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 224
S E TV I MG +DRE I ALRAA+ N +RAVE+L +GIPE
Sbjct: 128 SQQEDTVSAITGMG---YDREQTIAALRAAFWNADRAVEFLLTGIPEDVV---------- 174
Query: 225 GQAGNPPAQTQAQQP---AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 281
Q+P APA + +AN L+ L N Q
Sbjct: 175 -----------DQEPLLADAPAVENEEDAN------------------DDLNMLANMPQL 205
Query: 282 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGG--EGNVLG 337
+R M+Q NP++L +LQ+L NP L++ IQ +Q F+ ++N P GG EGN
Sbjct: 206 GEIRNMIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILNGSAPPAGGVEEGN--A 263
Query: 338 QLASAMPQAVTVTPEEREAIERLEAMGFD--RALVLEVFFACNKNEELAANYLLDHMHE 394
Q + ++PEE EAI R++++ + ALV+E +FAC+KNEE A N++ + E
Sbjct: 264 QARQPRRHVIHLSPEEAEAIARIKSIVSNAPEALVVEAYFACDKNEEAAINFIFSSLDE 322
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ E +++VK + + +G D P Q+ LI+ GK+L D T +
Sbjct: 3 LSVAFRTLTQLNFHLELNEEQTIAEVKALVASERGDDYAPELQK-LIYNGKILDDATKVG 61
Query: 61 ENKVAENSFVVVMLTK 76
E + FVVVML K
Sbjct: 62 EVGFDSSKFVVVMLAK 77
>gi|195108433|ref|XP_001998797.1| GI24165 [Drosophila mojavensis]
gi|193915391|gb|EDW14258.1| GI24165 [Drosophila mojavensis]
Length = 299
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 47/223 (21%)
Query: 172 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 231
Q++ D+ +D V ALRA++N+PERA+EYL +GIP T VP V
Sbjct: 121 QRVRDLVLMGYDEPDVRAALRASFNHPERAIEYLITGIP--THVPAVN------------ 166
Query: 232 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 291
QTQ Q NAN D G A L++L F +R +++ N
Sbjct: 167 -QTQTQT----------NANAADANLIG-------ETAERLNYLATDPHFAHVRDLIRQN 208
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 351
P++L+ +L L + +P I+ +Q +F+ ++N P MP ++
Sbjct: 209 PELLELVLTHLRESDPAAFEAIRNNQEEFISMLNAP---------------MPMTASLNT 253
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
EE A+ERL A+GFDR +V+ V+ AC+KNEELAA+ L E
Sbjct: 254 EEEAAVERLMALGFDRDVVVPVYLACDKNEELAADILFRQTDE 296
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 122/255 (47%), Gaps = 35/255 (13%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
V GS TV++I++MG ++R+ V RALRAA+NNP+RAVEYL GIPE PP +
Sbjct: 132 FVTGSERNETVERIMEMG---YERDQVERALRAAFNNPDRAVEYLLMGIPENLQQPPPPQ 188
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAP---TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR- 276
+ Q Q + P ++ DLF Q G+G
Sbjct: 189 QESQSAETQQQQQQQQESERQNQPEAESTNEQYEGEDLFAQAAQGTRDTTGSGADSNASA 248
Query: 277 ------NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL------- 323
+ ALR +V NP+ L P+L+ L + P L I + F+ +
Sbjct: 249 PGSIGLTMEDLLALRQVVSGNPEALAPLLESLSTRYPQLREQIMANPEVFISMLLDAVGD 308
Query: 324 -------INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 376
I EPVE E + P ++ +T ++ +AI RL +GF+R LV++V+FA
Sbjct: 309 NLNAMENITEPVENAE-------PTEAP-SLDLTEDDEQAISRLCELGFERTLVIQVYFA 360
Query: 377 CNKNEELAANYLLDH 391
C+KNEE+AAN L +
Sbjct: 361 CDKNEEIAANMLFND 375
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K +E++ + D K + +++ D+ Q LI GKVLKD T+
Sbjct: 1 MNIIFKDFKKEKIPVELESSSTILDAKNKLASIKSCDI---DQIKLIFSGKVLKDDQTVS 57
Query: 61 ENKVAENSFVVVMLTK 76
+ +N V++M++K
Sbjct: 58 SCGLKDNDQVIMMISK 73
>gi|242079217|ref|XP_002444377.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
gi|241940727|gb|EES13872.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
Length = 137
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 303 GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTPEEREAIERLE 361
G+QN + +LIQE+Q +FLR+IN+P E ++ Q A M + + V PEE EAI+RLE
Sbjct: 45 GEQNLQITQLIQENQAEFLRVINDPAGRAEESLPDQFGGAGMHRTIAVKPEENEAIQRLE 104
Query: 362 AMGFDRALVLEVFFACNKNEELAANYLLDHM 392
M FDR LVLEVFFACNK+E LAANYLLDHM
Sbjct: 105 QMTFDRDLVLEVFFACNKDEHLAANYLLDHM 135
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 80/124 (64%), Gaps = 8/124 (6%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLRN+ QFQ LR +VQ NPQ+L+P+LQ++G NP L LI +H FL+L++E +G
Sbjct: 196 LDFLRNNAQFQQLRQVVQQNPQMLEPILQQVGAGNPQLAALIGQHPEQFLQLLSE--DGD 253
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEA----MGFDRALVLEVFFACNKNEELAANY 387
L A A ++VT ER AIER+ + GF R ++ +FAC+KNEELAAN+
Sbjct: 254 NDAPLPPGAQAT--QISVTEPERAAIERVSSPDITFGFPRDQAIQAYFACDKNEELAANF 311
Query: 388 LLDH 391
L D
Sbjct: 312 LFDQ 315
>gi|356498318|ref|XP_003518000.1| PREDICTED: uncharacterized protein LOC100787330 [Glycine max]
Length = 159
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENK 63
F TLKGTHF ++V P D V+DVK NIE QG DVYP +Q+MLIHQGKVLKD TTLEENK
Sbjct: 48 FEVTLKGTHFVVQVNPRDTVADVK-NIEIAQGVDVYPGAQRMLIHQGKVLKDATTLEENK 106
Query: 64 VAENSFVVVMLTKVIRFHQVGPQL 87
V E++ VV+ML+K+I G ++
Sbjct: 107 VVEDNSVVIMLSKIIYMDTSGTEI 130
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 81/120 (67%), Gaps = 6/120 (5%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLRN+ QFQ LR +VQ P +L+P+L +G NP L +LI ++ FL+L++E + G
Sbjct: 314 LDFLRNNPQFQHLRQVVQQQPGMLEPILASVGAGNPQLAQLIGQNPDQFLQLLSE--DAG 371
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+ L A QA++VT EER AIERL A+GF R L ++ + AC+KNEELAAN+L +
Sbjct: 372 DDAPLPPGA----QAISVTEEERAAIERLCALGFPRDLAIQAYIACDKNEELAANFLFEQ 427
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + +SDVK+ I +G +V SQQ LI+ GK+L+D T+E
Sbjct: 45 MKLTFKDLKQQKFVIEAEPSELISDVKEKITKEKGWEV---SQQKLIYSGKILQDANTVE 101
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+V M+TK
Sbjct: 102 SYKIEEKGFIVCMITK 117
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 12/128 (9%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL
Sbjct: 303 GNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL-------- 354
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
N+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L
Sbjct: 355 ----NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLF 410
Query: 390 DHMHEFED 397
D E +D
Sbjct: 411 DQGPEEDD 418
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +E++P + ++ VK I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETIAKVKAKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV ++ K
Sbjct: 58 SYKIEEKGFVVCVVNK 73
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 126/248 (50%), Gaps = 27/248 (10%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L GS + + MG ++R + A+RAA+NNP+RAVEYL T +P
Sbjct: 127 SGLAMGSERAEAIANMEAMG---FERTQIEAAMRAAFNNPDRAVEYLL------TGIPES 177
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--------- 269
+ Q NPP A G N DL Q S
Sbjct: 178 VQQEQQQQRANPPQAASTAAAPAADDDGG--VNLFDLAAQRRGAPASGGAPAAAAAAQND 235
Query: 270 -GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E
Sbjct: 236 LGNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDA 295
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
E G QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 296 EDDVPLPPGA------QAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFL 349
Query: 389 LDHMHEFE 396
D + E
Sbjct: 350 FDQPEDDE 357
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+S VK+ I +G D P SQ+ LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKISAVKEKISAEKGWD--PKSQK-LIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E FVV M+ K
Sbjct: 58 SYNIEEKGFVVCMVNK 73
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 113/229 (49%), Gaps = 37/229 (16%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E V ++++MG +DR V ALR A+ NP+RA EYL +G+P + A P A+
Sbjct: 119 EDDVNRLMNMG---FDRPQVEAALRRAFGNPDRAAEYLTTGMPAEEA--PSMDAT----- 168
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 287
P PA G P +L + L FL ++ F LR +
Sbjct: 169 -----------PDEPAGGEGEAVVPQEL-----------SEDSPLYFLASNPSFLQLRQL 206
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA- 346
VQ P +L MLQ++ NP L+ LI E+Q DF L+N E G + G +A
Sbjct: 207 VQEQPHLLPSMLQQIAASNPDLVSLINENQEDFYILLNAEDENGGAPMPGAGGAAGAGGS 266
Query: 347 ----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
V +T EE A+ERL +GFDR L L+ + AC K+E +AAN+LL +
Sbjct: 267 GFPGVQLTQEEMAAVERLSQLGFDRNLALQAYIACEKDENMAANWLLSN 315
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+K F++++ + + +VK IE +G D YP +I+QGKVL D TL
Sbjct: 1 MKVTIKTIKDGTFDLQMGDDATIGEVKAAIEQSKG-DKYPKDGLKVIYQGKVLGDSDTLA 59
Query: 61 ENKVAENSFVVVMLT 75
E F+VVM +
Sbjct: 60 SANFQEKDFLVVMAS 74
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 41/228 (17%)
Query: 172 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 231
+ +L + G +DRE I ALRAA+ NP+RAVE+L +G+P+ A
Sbjct: 131 ENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLLNGLPDDAA----------------- 173
Query: 232 AQTQAQQPAAPAPTSGPNANPLDLFP-QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
Q+P DL P Q + N+ + G L+ L N Q +R ++Q
Sbjct: 174 ----DQEP--------------DLGPEQNIDNVDED-GNDDLNMLANMPQLAEIRALIQQ 214
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ--AVT 348
NP++L +LQ+L NP L++ IQ +Q F+ L+N +G P+ +
Sbjct: 215 NPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDLLNGGAQGAGAAAGNAPERNTPRRHVIH 274
Query: 349 VTPEEREAIERLEAMGFD--RALVLEVFFACNKNEELAANYLLDHMHE 394
++PEE AIER++A+ + A+V+E +FAC+KNEE A N++ ++ E
Sbjct: 275 LSPEEAAAIERIKAIVVNAPEAVVVEAYFACDKNEEAAINFIFSNLDE 322
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ + +++VK + + +G D P Q+ LI+ GK+L D +
Sbjct: 3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQK-LIYNGKILDDSVKVG 61
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGP 85
E + FVVVML+K + +V P
Sbjct: 62 EVGFDSSKFVVVMLSKR-KVTEVAP 85
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 123/242 (50%), Gaps = 51/242 (21%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-----PPVARAS 222
E V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A PP A +S
Sbjct: 312 EQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEVEPPQAGSS 368
Query: 223 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 282
G++ + +A + AA TSG +PLD+ LRN +F+
Sbjct: 369 GAGRS----SAVEADEGAA---TSGSGGHPLDV-------------------LRNLPEFE 402
Query: 283 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--------------EPV 328
LR ++Q P +L +LQ L Q+P L ++++Q + ++ E V
Sbjct: 403 ELRRIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQEYLVHMLTTEEEEDGSEGGGGGEGV 462
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
+ E + + VTP+E+ AIERL+A+GF LV++ +FAC KNE LAA+ L
Sbjct: 463 DNAE---TAETVREDDSYIEVTPQEQAAIERLKALGFPEGLVIQAYFACEKNEILAASLL 519
Query: 389 LD 390
D
Sbjct: 520 SD 521
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 133 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 192
Query: 73 MLTK 76
++ +
Sbjct: 193 LVAR 196
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 12/128 (9%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL
Sbjct: 129 GNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL-------- 180
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
N+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L
Sbjct: 181 ----NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLF 236
Query: 390 DHMHEFED 397
D E +D
Sbjct: 237 DQGPEEDD 244
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 82/133 (61%), Gaps = 10/133 (7%)
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG- 333
LR++ F LR++VQ NP +LQP LQ+LG NP L+ LI+ +Q F+ + E + GEG
Sbjct: 271 LRSNPVFGQLRSLVQQNPALLQPFLQQLGASNPELLSLIERNQQAFVEYLQEGLGEGEGL 330
Query: 334 -NVLGQLASAMP--------QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
+L Q Q + VT EER AI+RL AMGFD + ++ + AC++NEELA
Sbjct: 331 DALLDQFGDDGDDEGGMGGGQYIQVTEEERAAIQRLVAMGFDEQMAIQAYIACDRNEELA 390
Query: 385 ANYLLDHMHEFED 397
AN LL++ +F+D
Sbjct: 391 ANMLLENGFDFDD 403
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ KTL+ F IE +P + V+D+KK I+ QG +PA Q +I GK+L D T+
Sbjct: 2 VRIQFKTLQQKQFFIEAEPTETVADLKKKIQADQG---FPAESQKIIFSGKILPDEKTVG 58
Query: 61 ENKVAENSFVVVML 74
E E F VVM+
Sbjct: 59 EANFKEKDFCVVMV 72
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 126/240 (52%), Gaps = 35/240 (14%)
Query: 173 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 232
QI +M ++R + A+RAA+ N ERA+EYL +GIPE + + P A
Sbjct: 150 QIAEMEAMGFERSQIDLAMRAAFFNSERAIEYLLTGIPEN-----LLQEQRQAAPAAPAA 204
Query: 233 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD-------------FLRNSQ 279
+ QPAA G P+DLF A + FLRN+
Sbjct: 205 GQASSQPAA-----GGEDEPVDLFAAAANAGNRGGAARADNAAAPGGGGLGNLDFLRNNA 259
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 339
QFQ LR +VQ PQ+L+P+LQ++G NP L LI +H FL+L++E +
Sbjct: 260 QFQQLRQVVQQQPQMLEPILQQVGAGNPQLATLISQHPEQFLQLLSENADDD-------- 311
Query: 340 ASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+ +P QA+ V+ EER+AIERL +GF+R ++ +FAC+KNEELAAN+L + + E
Sbjct: 312 -APLPPGAQAIEVSGEERDAIERLCRLGFNRDQAIQAYFACDKNEELAANFLFEQPEDEE 370
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + +S+VK I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFVIEAEPTELISEVKDKISKEKG---WEASQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYHIEEKGFIVCMV 71
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 12/131 (9%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 258 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 317
Query: 330 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 318 D---------ETQLPPGTQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 368
Query: 387 YLLDHMHEFED 397
+L D E ED
Sbjct: 369 FLFDQPDENED 379
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 58/74 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVML 74
ENKV E+ F+VVML
Sbjct: 61 ENKVNEDGFLVVML 74
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 47/56 (83%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
+ + AASNL++G N++ + Q+++MGGGSWD++ V RALRAAYNNPERAVEYLYS
Sbjct: 130 NTHDNAASNLLSGRNVDTIINQLMEMGGGSWDKDKVQRALRAAYNNPERAVEYLYS 185
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 12/131 (9%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 257 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 316
Query: 330 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 317 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 367
Query: 387 YLLDHMHEFED 397
+L D E ED
Sbjct: 368 FLFDQPDENED 378
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I + +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIASEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 12/131 (9%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 256 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 315
Query: 330 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 316 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 366
Query: 387 YLLDHMHEFED 397
+L D E ED
Sbjct: 367 FLFDQPDENED 377
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I + +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIASEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 127/250 (50%), Gaps = 49/250 (19%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--- 215
S L G+ EA V + MG + R + A+RAA+ NP+RAVEYL +GIP+
Sbjct: 112 SALTMGNEREAAVANMESMG---FARADIDAAMRAAFFNPDRAVEYLLTGIPDSARQEQA 168
Query: 216 -------PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA- 267
P +AGG G A AP+ G P++LF G A
Sbjct: 169 QAAQANAPSSPTPAAGGNTG-----------ATAAPSGG--DEPINLFEAARGGSGGAAR 215
Query: 268 ----------------GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 311
A +L+FLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L +
Sbjct: 216 SGATGAAAGAGGATALNANSLEFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQ 275
Query: 312 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 371
+I + FL+L+ E + G QA++VT +EREAIERL +GF+R +V+
Sbjct: 276 MIAANPEQFLQLLAEDADDDAPLPPGT------QAISVTEDEREAIERLCRLGFERDIVI 329
Query: 372 EVFFACNKNE 381
+ +FAC+KNE
Sbjct: 330 QAYFACDKNE 339
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + ++K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGELKAKIQADKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKV 77
+ E F+V M++K
Sbjct: 58 SYSIEEKGFIVCMVSKT 74
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 129/295 (43%), Gaps = 64/295 (21%)
Query: 156 QAASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
QA SN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 142 QAVSNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPES 198
Query: 213 -------TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL----- 260
VP + GQ QQ A G + L
Sbjct: 199 LQHPTPPVPVPAPVPTAPTGQQTERNTSETGQQGANEEHGDGDEEGEESTQHENLFEAAA 258
Query: 261 -----PNMGSNAGAGTLDFLRNS-----------------QQFQALRTMVQANPQILQPM 298
N G ++ GT + QQ Q LR +Q+NP+++QP+
Sbjct: 259 AAAAATNQGDSSIGGTTSGVGAGAGAGAGGEGDIGGLGDDQQMQLLRAALQSNPELIQPL 318
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLG------------------- 337
L++L NP + LI + F+R+ + G G GN LG
Sbjct: 319 LEQLAASNPQIASLISQDPEAFVRMF---LSGAPGSGNDLGFEFEDEGAGGAGGATTGGD 375
Query: 338 QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
+ + ++ ++ AI RL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 376 EEEEEGTIRIQLSEQDNNAINRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 430
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K ++V+ D V K+ + +G D +SQ L++ GKVL+D LE
Sbjct: 1 MQIVFKDFKKQTVTLDVELTDSVLSTKEKLAQEKGCD---SSQIKLVYSGKVLQDDKNLE 57
Query: 61 ENKVAENSFVVVMLTKVIR 79
K+ E + ++ M+ K +
Sbjct: 58 SYKLKEGASIIFMINKTKK 76
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 90/131 (68%), Gaps = 12/131 (9%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 254 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDID 313
Query: 330 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 314 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 364
Query: 387 YLLDHMHEFED 397
+L D E ED
Sbjct: 365 FLFDQPDEGED 375
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P +K+ DVK I +G +P SQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKGKIAMEKG---WPPSQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 25/247 (10%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 219
+ ++G+ LE V I++MG + +E V RA+R ++NNP+RAVEYL +G+P++TA P
Sbjct: 163 SFLSGAELETAVSSIIEMG---FSKEDVQRAMRMSFNNPDRAVEYLMNGLPDETAAAPSR 219
Query: 220 RASAGGQAGNP---PAQTQAQQPAAPAPTSGPNAN-PLDLFPQGLP-----NMGSNAGAG 270
P P + + P PNA +LF Q N S G
Sbjct: 220 TTGVPATPATPSPAPVTSMQETPTGAGAGRAPNAGQSGNLFEQAAAMQSGTNRASEGLLG 279
Query: 271 TLDF-------LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 323
D L N Q LRT+++ NP LQP++Q L + NP L + LR+
Sbjct: 280 EEDAQGRQILDLGNPQVLSQLRTLLEQNPAALQPLVQALVQSNPQLAEAMSADPEGVLRM 339
Query: 324 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
+ GEG + G+ + +P + E+R +E++ AMG +E +F C +N E+
Sbjct: 340 L-----AGEG-LEGEDSFEVPSLQQLADEDRTQVEQIVAMGIPERKAIESYFMCGRNLEM 393
Query: 384 AANYLLD 390
A Y +
Sbjct: 394 AVQYYFE 400
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VK+L G +F I+V+P D V VK+ I+ QG +PA Q LI+ GK+L D +
Sbjct: 1 MKLLVKSLAGGNFHIDVEPSDSVGSVKQKIQASQG---HPAENQKLIYSGKILADEKNMG 57
Query: 61 ENKVAENSFVVVMLTK 76
E ++ E F+VVM++K
Sbjct: 58 EYEIKEKDFLVVMVSK 73
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 80/123 (65%), Gaps = 4/123 (3%)
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
L + Q Q LR ++Q NPQ+ QP++QEL QNP L +++ ++ +L++ + GEG+
Sbjct: 274 LADHPQIQHLRQLMQQNPQLAQPIIQELAAQNPGLAQVLGQNPEMLAQLLSGAL-AGEGD 332
Query: 335 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
G + Q V VT EER AIERLEA+GF R V+E +FAC+KNEELAANYL D
Sbjct: 333 EGGDIPPGA-QVVHVTEEERAAIERLEALGFPRQAVIEAYFACDKNEELAANYLFDGA-- 389
Query: 395 FED 397
F+D
Sbjct: 390 FDD 392
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V D+K+ I+ QG + Q LI+ GKVL D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVGDLKRKIQETQG---HALESQKLIYSGKVLPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
++ E F+V+M++K
Sbjct: 58 SCEIKEKDFLVLMVSK 73
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 27/148 (18%)
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL---------------I 313
+G LD LR F+ +R +V++NPQ L +L +G+ +P L+++ I
Sbjct: 187 SGVLDELRQHPMFEQMRAIVRSNPQTLPQILSLIGQSDPSLLQVSLTIITYLIYYPYIAI 246
Query: 314 QEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER------LEAMGFDR 367
E+Q +F++L++EPV G G+ + Q++T+TPEE E+I R LE +GF R
Sbjct: 247 TENQEEFIQLLSEPVLGTSGDFIDA------QSITLTPEEMESINRVSDTIYLEGLGFSR 300
Query: 368 ALVLEVFFACNKNEELAANYLLDHMHEF 395
+E F AC+KNEE+AANYLL+++ ++
Sbjct: 301 PAAVEAFLACDKNEEMAANYLLENIADY 328
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 205
L+ G LE + I++MG +D E+V A+ AA+NNP RA+E L
Sbjct: 113 LLMGEELEKAINGIVEMG---FDVESVKAAMSAAFNNPNRAIELL 154
>gi|167541066|gb|ABZ82043.1| DNA repair protein, partial [Clonorchis sinensis]
Length = 156
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 12/124 (9%)
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP----------VE 329
QFQ +R +VQANP++L ++Q++G N L+RLIQE++ FL +N P +E
Sbjct: 26 QFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAPISQDAGEPEGIE 85
Query: 330 GGEGNVLGQLASAMPQAV--TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
E G + P+ + T+T EER AIERL+A+GF LV++ ++AC KNE+ AAN+
Sbjct: 86 SSETTTPGNVRQGEPRQIILTMTQEERAAIERLQALGFPEELVIQAYYACEKNEDAAANF 145
Query: 388 LLDH 391
LL
Sbjct: 146 LLSE 149
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 85/122 (69%), Gaps = 5/122 (4%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LD+LRN+ QFQ LR +VQ PQ+L+P+LQ +G NP L +LI +H FL+L+ E E
Sbjct: 273 GNLDWLRNNPQFQQLRQVVQQQPQMLEPILQSVGAGNPQLAQLIGQHPEQFLQLLGE--E 330
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
G EG+ L + ++VTPEE EAIERL +GF+R L ++ +FAC+KNEELAAN+L
Sbjct: 331 GEEGDALAPPGATQ---ISVTPEESEAIERLCGLGFERDLAIQAYFACDKNEELAANFLF 387
Query: 390 DH 391
+
Sbjct: 388 EQ 389
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + +SDVK IE +G + A+QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPTELISDVKAKIEKEKG---WEAAQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVML 74
K+ E F+V M+
Sbjct: 58 SYKIEEKGFIVCMV 71
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 90/131 (68%), Gaps = 12/131 (9%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 242 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 301
Query: 330 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 302 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 352
Query: 387 YLLDHMHEFED 397
+L D E E+
Sbjct: 353 FLFDQPDENEE 363
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 17 VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74
+ P + VK+ I T +G +PASQQ LI+ GK+L+D T+E + E F+V M+
Sbjct: 2 LSPPTRSVHVKEKIATEKG---WPASQQKLIYSGKILQDDNTVESYNIEEKGFIVCMV 56
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 112/249 (44%), Gaps = 58/249 (23%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
QA S LV G V I+ MG ++RE V+ AL A++ NP+RAVEYL SG T
Sbjct: 134 SQAESTLVTGEAYNELVTSIMAMG---FERERVVAALNASFCNPDRAVEYLMSGT---TN 187
Query: 215 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 274
V G A PP Q P AP S N +
Sbjct: 188 V---------GTA--PPQQQPDTIPTENAPISDSN---------------------VFND 215
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-------- 326
L ++ + Q + +Q NP +LQP LQ++ + NP L ++ H +F+ +
Sbjct: 216 LMDNPEIQVMAQQIQQNPHLLQPYLQQIEQSNPSLFNMVSSHPEEFVSFLTTLRRGTSQT 275
Query: 327 ---PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
P G G V V VT E++ IE+L+++GF + ++ + AC+KN ++
Sbjct: 276 QPPPASAGAGGV---------SYVRVTAGEQQDIEQLKSLGFSESECVQAYMACDKNLDM 326
Query: 384 AANYLLDHM 392
AAN+LL +
Sbjct: 327 AANFLLSDI 335
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTLK F+IE+ E+ V +K+ I +G+D +P + Q LI+ GK+L D +L+
Sbjct: 1 MLITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ + F+V M+TK
Sbjct: 61 EYKIEDGKFIVAMVTK 76
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 27/180 (15%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 227
Query: 208 GIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 263
GIP Q V P +A + G +P A A
Sbjct: 228 GIPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TT 267
Query: 264 GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 323
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F R
Sbjct: 268 TTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFFRC 327
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 272 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 331
Query: 61 ENKVAENSFVVVMLTKV 77
+N+V+E+ F+VVML+K+
Sbjct: 332 DNEVSEDGFLVVMLSKI 348
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 571 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 630
Query: 61 ENKVAENSFVVVMLTKV 77
+N+V+E+ F+VVML+K+
Sbjct: 631 DNEVSEDGFLVVMLSKI 647
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 290 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 349
Query: 61 ENKVAENSFVVVMLTKV 77
+N+V+E+ F+VVML+K+
Sbjct: 350 DNEVSEDGFLVVMLSKI 366
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 9/138 (6%)
Query: 264 GSN--AGAGTLDF--LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 319
G+N GAG +D LR++ Q Q LR +V ANPQ+ QP++Q+L NP ++ ++
Sbjct: 247 GANPFGGAGPIDMAALRDNPQVQHLRELVAANPQLAQPIIQQLAASNPQFAQMFAQNPEA 306
Query: 320 FLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
++L+ +G Q + VTPEE+ AIERLEA+GF R V+E +FAC+K
Sbjct: 307 LMQLLM-----NQGEGGEGGLPPGAQYINVTPEEQAAIERLEALGFPRQAVIEAYFACDK 361
Query: 380 NEELAANYLLDHMHEFED 397
NEELAANYL + E +D
Sbjct: 362 NEELAANYLFEGGFEDDD 379
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F I+ + D V D+KK I QG + Q +I+ GKVL D ++E
Sbjct: 1 MKITVKTLQQKVFNIDAEGSDTVGDLKKKISESQGHSI---ESQKIIYSGKVLPDNKSVE 57
Query: 61 ENKVAENSFVVVM 73
++ E F+V+M
Sbjct: 58 SCEIKEKDFLVLM 70
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 87/128 (67%), Gaps = 6/128 (4%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 264 GNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDID 323
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L
Sbjct: 324 DD-----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLF 377
Query: 390 DHMHEFED 397
+ E +D
Sbjct: 378 EQPDEGDD 385
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 SYNIEEKGFIVCMVSK 73
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 548 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 607
Query: 61 ENKVAENSFVVVMLTKV 77
+N+V+E+ F+VVML+K+
Sbjct: 608 DNEVSEDGFLVVMLSKI 624
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 122/259 (47%), Gaps = 39/259 (15%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
V GS V++I++MG ++R+ V RA+RAA+NNP+RAVEYL GIPE +
Sbjct: 150 FVVGSQRNEAVERIMEMG---YERDEVNRAMRAAFNNPDRAVEYLLMGIPEHLQQQEQQQ 206
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPTSGP---NANPLDLFPQGLPNMGSNAGAGTLDFLRN 277
++ + A T+ + +DLF Q G ++ A
Sbjct: 207 EQQ------QEQHVESTEVATTEETNDNEDVDNGEVDLFTQAAQGNGDSSAAPRGAAGAA 260
Query: 278 S----------QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
+ ALR +V NP+ L P+L+ L + P L I + F+ ++ E
Sbjct: 261 GGPPGSIGLTMEDLLALRQVVAGNPEALAPLLENLSIRYPQLREQILANPEVFVSMLLEA 320
Query: 328 VEGGEGNVLGQL--------------ASAMPQA---VTVTPEEREAIERLEAMGFDRALV 370
V V+G+ ASA Q V ++ E+ +AI RL +GF+R LV
Sbjct: 321 VGDNLQGVMGEEFEGLAGGELGGNDDASAAGQEQHIVQLSEEDEQAISRLCELGFERNLV 380
Query: 371 LEVFFACNKNEELAANYLL 389
++V+FAC+KNEE+AAN L
Sbjct: 381 IQVYFACDKNEEIAANILF 399
>gi|83033008|ref|XP_729289.1| DNA repair protein RAD23 [Plasmodium yoelii yoelii 17XNL]
gi|23486634|gb|EAA20854.1| putative DNA repair protein RAD23 [Plasmodium yoelii yoelii]
Length = 368
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 119/249 (47%), Gaps = 29/249 (11%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
L+ G L+ T+ I MG ++RE V +A+ AYNNP A++YL +G Q +
Sbjct: 132 LLTGDKLKETIDNICAMG---FERELVQKAMTLAYNNPNVAIDYLTNGF--QDIIDDGHD 186
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 280
S + P + + N N LD M N+ + LRNS
Sbjct: 187 ISEMKDSSENP--NDRDENYSNLSNLLMNYNLLD--ENERQEMSVNSES-----LRNSPF 237
Query: 281 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 340
F +R +NPQ + +L+ +G+ +P L+ I+E+Q +FL + + +G N L
Sbjct: 238 FNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNAL-QNYDGDNNNAENDLI 296
Query: 341 SAMPQA--------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
A ++ E E++ +LE++GF + + LE F AC+KNEE+AAN
Sbjct: 297 PNYEYADETNQNNDNFNIPITSLNESEMESVRKLESLGFPKHVALEAFIACDKNEEMAAN 356
Query: 387 YLLDHMHEF 395
YL ++M+++
Sbjct: 357 YLFENMNDY 365
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 17/85 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
MK+ V+TL+ T EI V D + D+KK IE V+P +Q LI G +L
Sbjct: 1 MKIKVRTLQNTEEEINVDNNDTILDLKKKIEN-----VFPEMACDKQKLIFSGNIL---- 51
Query: 58 TLEENK----VAENSFVVVMLTKVI 78
++E+K + EN V+VM+T+ I
Sbjct: 52 -IDEDKAVDILKENDIVIVMVTRKI 75
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V ++ VS VK+ IE QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKVAEN F+VVMLTK
Sbjct: 61 DNKVAENGFLVVMLTK 76
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 42/258 (16%)
Query: 162 VAGSNLEATVQQ----ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 217
V SN A Q+ I ++ ++R + A+RAA+ NPERAVEY+ +GIPE
Sbjct: 136 VGDSNTLAIGQERAEAIANLEAMGFERSQIDAAMRAAFYNPERAVEYILNGIPEN----- 190
Query: 218 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQ------------------- 258
+ SA A A A N N DL Q
Sbjct: 191 LQHTSARPAPAAAAAPAAAPAAPAAGGDDDGNVNLFDLAAQQGRGSGARGGAGADAGAGA 250
Query: 259 --GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 316
+ + G G L+FLR++ QFQ LR +VQ PQ+L+P+LQ+LG NPHL +LI ++
Sbjct: 251 AAAVAAAAAQQGFGNLEFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPHLAQLIAQN 310
Query: 317 QTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEV 373
FL+L++E G + +P Q ++VT EER+AIERL +GF + ++
Sbjct: 311 PEQFLQLLSES---------GDDDAPLPHGAQQISVTEEERDAIERLVRLGFTQDQAIQA 361
Query: 374 FFACNKNEELAANYLLDH 391
+FAC+KNEELAAN+L D
Sbjct: 362 YFACDKNEELAANFLFDQ 379
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K LK F I+ +P + VS +K+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKITIKDLKQQRFTIDAEPTELVSALKQKISDERGWD---PKLQKLIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV ++ K
Sbjct: 58 SYKIEEKGFVVCVVNK 73
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
L+FLRNS FQ LR +VQ P +L+P LQ++ + NP L ++I + FL+L+ E EG
Sbjct: 285 LEFLRNSPHFQQLRQLVQQQPAMLEPFLQQVAEGNPQLAQMISLNPDQFLQLLAEDQEG- 343
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+G L ++A ++VTPEER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 344 DGGPLPPGSTA----ISVTPEERDAIERLCGLGFSRDQVIQAYFACDKNEELAANFLFEQ 399
Query: 392 MHEFED 397
+ E+
Sbjct: 400 PEDDEE 405
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P D ++ VK+ + +G D ASQQ LI+ GKVL D T+E
Sbjct: 1 MKLSFRDLKQQKFTIEAEPTDTIAQVKEKVAAEKGWD---ASQQKLIYSGKVLADANTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+V M++K
Sbjct: 58 SYKIEEKGFIVCMISK 73
>gi|240256296|ref|NP_197113.4| uncharacterized protein [Arabidopsis thaliana]
gi|332004862|gb|AED92245.1| uncharacterized protein [Arabidopsis thaliana]
Length = 171
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK--VIRFHQVGPQLFQL 90
NKV + S + +++TK + + P LFQ+
Sbjct: 61 ANKVFDKSVIAIIITKGCLEEMEKQNPPLFQM 92
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 4/101 (3%)
Query: 294 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVTPE 352
I + L+E+ KQNP L ++I+ + F+ ++N+ E E N L Q + Q + VT
Sbjct: 74 ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNK--ESFERDNELAQPEEDLLQ-LQVTAV 130
Query: 353 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 393
+ EAI RLEAMGF+R +VLEVF ACNKNE+LAAN+LLDH+H
Sbjct: 131 DDEAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDHIH 171
>gi|9755819|emb|CAC01850.1| putative protein [Arabidopsis thaliana]
Length = 142
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK--VIRFHQVGPQLFQL 90
NKV + S + +++TK + + P LFQ+
Sbjct: 61 ANKVFDKSVIAIIITKGCLEEMEKQNPPLFQM 92
>gi|341889007|gb|EGT44942.1| CBN-RAD-23 protein [Caenorhabditis brenneri]
Length = 328
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 52/240 (21%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E TV I MG +DRE + ALRAA+ NP+RAVE+L +GIP+ V A G
Sbjct: 127 EETVAAITGMG---YDREQAVAALRAAFWNPDRAVEFLLNGIPDD--VVDQEPALGLGLG 181
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 287
+PP + ++ L+ L N Q +R+M
Sbjct: 182 ADPPGENVEEE-----------------------------VNEDLNMLANMPQLAEIRSM 212
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP--- 344
+Q NP++L +LQ+L NP L++ IQ +Q F+ ++N G G Q
Sbjct: 213 IQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILN-----GAGQNAPQGGGGAGAGA 267
Query: 345 ---------QAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMHE 394
+ ++PEE AIER++A+ A+V+E +FAC+KNEE A N++ + E
Sbjct: 268 AAGERGPRRHVIHLSPEEAAAIERIKAIVNAPEAMVVEAYFACDKNEEAAINFIFSSLDE 327
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +TL +F +E+ + +++VKK + T +G D P Q+ LI+ GK+L D T + +
Sbjct: 5 VAFRTLTQINFSLELNEDQTIAEVKKLVATEKGDDYAPELQK-LIYNGKILDDATKVADV 63
Query: 63 KVAENSFVVVMLTK 76
+ FVVVMLTK
Sbjct: 64 GFDSSKFVVVMLTK 77
>gi|312382824|gb|EFR28136.1| hypothetical protein AND_04281 [Anopheles darlingi]
Length = 273
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 112/222 (50%), Gaps = 35/222 (15%)
Query: 186 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPT 245
+VI AL NN E AVEYL +A A + Q A+ PAA P
Sbjct: 77 SVIVALEICSNNREAAVEYLMD--------------NAADMAVDLLEQQSAETPAASVPG 122
Query: 246 SGPNANPLDLFPQGL--PNMGSNAGAGT----LDFLRNSQQFQALRTMVQANPQILQPML 299
G + GL P+M AG L FLR + F ++ ++Q +P +L ++
Sbjct: 123 IGVS---------GLQAPDMAVAAGGARNERPLAFLRGNPVFFEMKRLLQEDPSLLPYLM 173
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVE----GGEGNVLGQLASAMPQAVTVTPEERE 355
Q + NP+LMR+I E+Q +FL +INE E E L +A+AM ++TP + +
Sbjct: 174 QRIQYSNPNLMRIISENQEEFLAMINENSELAPDNREAQELESIAAAMVN--SLTPSDMD 231
Query: 356 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
AI+RL+A+G+ LV++ + AC ++E AA +L+ E ED
Sbjct: 232 AIDRLKALGYPEHLVIQAYIACERDEYKAAEFLVSQNLEDED 273
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ I + G YP +Q LI+ GKV++D L
Sbjct: 1 MKITLKTLKQQTFHVEVDVEKDTVRMLKEKIFSESGQ-AYPVERQWLIYLGKVMEDSHPL 59
Query: 60 EENKVAENSFVV 71
+ + + FV+
Sbjct: 60 SQYNLDDKKFVM 71
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 110/241 (45%), Gaps = 86/241 (35%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL-------------------------- 270
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+L+A+GF +LV++ +FAC KNE LAAN+LL FE
Sbjct: 271 ----------------------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFE 306
Query: 397 D 397
D
Sbjct: 307 D 307
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 85/133 (63%), Gaps = 12/133 (9%)
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
G G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E
Sbjct: 264 GGFGNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLQLLGE 323
Query: 327 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
V+ +P QA+ VT EER+AIERL +GFDR ++ +FAC+KNEEL
Sbjct: 324 EVDDD---------VPLPPGAQAIQVTEEERDAIERLCRLGFDRDAAIQAYFACDKNEEL 374
Query: 384 AANYLLDHMHEFE 396
AAN+L D + E
Sbjct: 375 AANFLFDQPDDDE 387
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D VS VK+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLVSAVKQKIAGEKGWD---PKDQKLIYSGKILKDDDTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV M+ K
Sbjct: 58 SYKIEEKGFVVCMVNK 73
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
Length = 372
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 6/128 (4%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L+ E +
Sbjct: 250 GNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLAEDL- 308
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
G EG + + VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L
Sbjct: 309 GDEGEL-----PPGAHEIRVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLF 363
Query: 390 DHMHEFED 397
+ E ED
Sbjct: 364 EQPDEGED 371
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETVGQVKEKIAQEKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 SYNIEEKGFIVCMVSK 73
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 73/126 (57%), Gaps = 16/126 (12%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
L+FLR+ QF LR +VQ NP +L P+L ++G+ NP L++ I +H FLRL+ EP G
Sbjct: 198 LEFLRSQPQFDQLRQLVQQNPNLLPPLLAQIGQANPQLLQAIDQHPQAFLRLLQEPAGGA 257
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIER--------LEAMGFDRALVLEVFFACNKNEEL 383
G A + VT EE EAI R LEA+GF V+E +FAC+KNE L
Sbjct: 258 PG--------AGQNVIRVTQEEHEAIARVSITERVVLEALGFSHHRVIEAYFACDKNENL 309
Query: 384 AANYLL 389
AAN L
Sbjct: 310 AANLLF 315
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 12/131 (9%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E V+
Sbjct: 268 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVD 327
Query: 330 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN
Sbjct: 328 DD---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAAN 378
Query: 387 YLLDHMHEFED 397
+L D + +D
Sbjct: 379 FLFDQPEDDDD 389
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +EV+P D +S VK+ I +G D A +Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQNKFTLEVEPTDLISTVKQRISEEKGWD---AKEQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVML 74
K+ E FVV M+
Sbjct: 58 SYKIEEKGFVVCMI 71
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 75/123 (60%), Gaps = 7/123 (5%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN----EP 327
++ LRN Q Q LR +VQ+NP ++QP++Q+L QNP L + ++ ++ E
Sbjct: 295 IEALRNHPQIQQLRELVQSNPGLIQPLVQQLAAQNPELAQAFMQNPFALANILGVDDEEG 354
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
+ G EG G L V VTPEER AIERLE +GF R +E +FAC+KNEELAANY
Sbjct: 355 LAGMEGG--GDLPPGA-HVVQVTPEERAAIERLEGLGFPRQAAIEAYFACDKNEELAANY 411
Query: 388 LLD 390
L +
Sbjct: 412 LFE 414
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F I+ +P + V ++K+ I QG DV S Q LI+ GKVL D ++
Sbjct: 1 MKITVKTLQQKVFTIDAEPSNSVQELKEKISKEQGHDV---SSQKLIYSGKVLADTKSVA 57
Query: 61 ENKVAENSFVVVMLTK 76
E ++ E F+V+M+ K
Sbjct: 58 ECEIKEKDFLVLMVAK 73
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 88/127 (69%), Gaps = 11/127 (8%)
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L++E
Sbjct: 274 GLGNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSE- 332
Query: 328 VEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
+G E + + +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELA
Sbjct: 333 -DGDEDD------APLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELA 385
Query: 385 ANYLLDH 391
AN+L D
Sbjct: 386 ANFLFDQ 392
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE++P + ++ VK+ I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVIEIEPSETIAAVKQKISDERG---WAPKTQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV ++ K
Sbjct: 58 SYKIEEKGFVVCVVNK 73
>gi|195400082|ref|XP_002058647.1| GJ14198 [Drosophila virilis]
gi|194142207|gb|EDW58615.1| GJ14198 [Drosophila virilis]
Length = 290
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 47/223 (21%)
Query: 172 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 231
Q++ D+ ++ + V AL A++N+PERA+EYL +GIP A G + P
Sbjct: 112 QRVRDLMLMGYEEQDVRAALSASFNHPERAIEYLITGIPSSHVT-----AMNGTTTTSSP 166
Query: 232 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 291
A++ + A L++L +F +R +++ N
Sbjct: 167 AESSV----------------------------ISETAEHLNYLATDPRFAHVRDLIRQN 198
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 351
P++L+ +L L + +P I+ +Q +F+ ++NEP ++ G L+
Sbjct: 199 PELLELVLTHLRESDPAAFEAIRSNQEEFISMLNEPT----AHLTGSLSH---------- 244
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
EE A+ERL A+GFDR +VL ++ AC+KNEEL A+ L E
Sbjct: 245 EEEAAVERLMALGFDRDVVLPIYLACDKNEELTADILFRQTDE 287
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 84/123 (68%), Gaps = 6/123 (4%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLRN+ QFQ LR +VQ P +L+P+LQ++G+ NP L +LI +H FL L++E +
Sbjct: 264 LDFLRNNPQFQQLRQLVQQQPHMLEPILQQVGQGNPQLAQLIADHPEQFLSLLSE--DHD 321
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+ L A Q V++T EE EAI+RL +GF+R LV++ +FAC+KNEELAAN+L D
Sbjct: 322 DDTPLPPGA----QVVSITEEESEAIDRLCRLGFERDLVVQAYFACDKNEELAANFLFDQ 377
Query: 392 MHE 394
E
Sbjct: 378 PEE 380
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + ++DVK I +G + A +Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETIADVKAKISAEKG---WEADKQKLIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M+ K
Sbjct: 58 SYNIEEKGFIVCMIQK 73
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 18/178 (10%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
+A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP++ ++
Sbjct: 184 RAESNLLMGEEYNRTVASMIEMG---YARDQVERAMSASFNNPERAVEYLITGIPQEESL 240
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
Q Q S ++ +++ A +FL
Sbjct: 241 FNAGHDDEDVARAGSLLQQQVGGGGDGGSAS---------------DLQTDSSADPFEFL 285
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 333
R+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+EG G
Sbjct: 286 RSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPLEGEVG 343
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V D+KK I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFSIDFDPEKTVLDLKKTIFNERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVG 84
KV E F+VVMLT+ I G
Sbjct: 60 SYKVDEKKFIVVMLTRDISVTGSG 83
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 125/242 (51%), Gaps = 31/242 (12%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E Q I +M ++R + A+RAA+ NPERAVEYL +GIPE V + +A +
Sbjct: 141 EQRAQAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLTGIPEN-----VQQQTAAQRV 195
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------ 269
G+ + ++G A DL + L ++ + AG
Sbjct: 196 GHAIPPPAPAAASPAPASAGEAAG--DLEGENLFDLAARAGGARSGSGGAAAAGASAQDL 253
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G L +LR + QFQ LR +VQ P +L+ +LQ+L NP L + I ++ FL+L++E
Sbjct: 254 GNLSWLRQNAQFQQLRQVVQQQPGMLEQILQQLSAGNPQLAQTIAQNPEQFLQLLSE--- 310
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
G+ L Q ++VT EER+AIERL +GF + ++ +FAC KNEELAAN+L
Sbjct: 311 --HGDDDAPLPPGAHQ-ISVTEEERDAIERLTRLGFSQDQAIQAYFACEKNEELAANFLF 367
Query: 390 DH 391
D
Sbjct: 368 DQ 369
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE +P D +S VK+ + G D PA Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVNFKDLKQQKFTIEFEPTDLISTVKQKLSEDHGWD--PALQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLT 75
K+ E FVV M++
Sbjct: 58 SCKIEEKGFVVCMVS 72
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 110/241 (45%), Gaps = 86/241 (35%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL-------------------------- 270
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+L+A+GF +LV++ +FAC KNE LAAN+LL F+
Sbjct: 271 ----------------------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFD 306
Query: 397 D 397
D
Sbjct: 307 D 307
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 110/241 (45%), Gaps = 86/241 (35%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL-------------------------- 270
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+L+A+GF +LV++ +FAC KNE LAAN+LL F+
Sbjct: 271 ----------------------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFD 306
Query: 397 D 397
D
Sbjct: 307 D 307
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 110/241 (45%), Gaps = 86/241 (35%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL-------------------------- 270
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+L+A+GF +LV++ +FAC KNE LAAN+LL F+
Sbjct: 271 ----------------------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFD 306
Query: 397 D 397
D
Sbjct: 307 D 307
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 110/241 (45%), Gaps = 86/241 (35%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL-------------------------- 270
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+L+A+GF +LV++ +FAC KNE LAAN+LL F+
Sbjct: 271 ----------------------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFD 306
Query: 397 D 397
D
Sbjct: 307 D 307
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
++A G LDFLR + QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+
Sbjct: 936 ASADLGNLDFLRTNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLHLL 995
Query: 325 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
E E G QA++VT EER+AIERL +GFDR ++ +FAC+KNEELA
Sbjct: 996 GEDAEDDVPLPPGA------QAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELA 1049
Query: 385 ANYLLD 390
AN+L D
Sbjct: 1050 ANFLFD 1055
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F +EV+P D +S VK+ I +G D Q LI+ GK+LKD T+ + E
Sbjct: 693 LKQQKFTLEVEPADLISAVKEKISAEKGWD---PKHQKLIYSGKILKDEETVASYNIEEK 749
Query: 68 SFVVVMLTK 76
FVV M+ K
Sbjct: 750 GFVVCMVNK 758
>gi|70930440|ref|XP_737130.1| DNA repair protein RAD23 [Plasmodium chabaudi chabaudi]
gi|56512258|emb|CAH84100.1| DNA repair protein RAD23, putative [Plasmodium chabaudi chabaudi]
Length = 243
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 34/258 (13%)
Query: 154 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG----I 209
Y S L+ G L+ + I MG ++RE V +A+ AYNNP A++YL +G I
Sbjct: 1 YSNPESILLTGDKLKEAIDNICAMG---FERELVQKAMVLAYNNPNVAIDYLTNGFQDII 57
Query: 210 PEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
E + + S NP + + + N N LD +M N+ A
Sbjct: 58 DEGHDISDIKDPSE-----NPNDRDENYSNLSNLLM---NYNLLD--ENERQDMSVNSEA 107
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR-LINEPV 328
LRNS F +R +NPQ + +L+ +G+ +P L+ I+E+Q +FL L N
Sbjct: 108 -----LRNSPFFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNALQNYDT 162
Query: 329 EGGEGNVL---GQLASAMPQAV--------TVTPEEREAIERLEAMGFDRALVLEVFFAC 377
+ N L + A Q ++ E E++ +LE++GF + + LE F AC
Sbjct: 163 DNNAENDLIPNYEYADEANQNTDNFNIPIASLNESEMESVRKLESLGFPKHVALEAFIAC 222
Query: 378 NKNEELAANYLLDHMHEF 395
+KNEE+AANYL ++M+++
Sbjct: 223 DKNEEMAANYLFENMNDY 240
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 119/232 (51%), Gaps = 56/232 (24%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L+ GS EA VQ++ MG + R + RA+RAA+ +P+RA+EYL +GIP+ T P
Sbjct: 160 STLLMGSQSEAAVQEMEAMG---FPRADIDRAMRAAFFHPDRAIEYLLNGIPD-TPEQPA 215
Query: 219 ARASAGGQAGNPPAQTQAQQPAAPA-------PTSGPNAN-----PLDLFPQGLPNMGSN 266
AR +QP+APA P++ P AN P++LF
Sbjct: 216 AR----------------EQPSAPAQSNVPVPPSNQPAANAEPDEPINLFEAAAQAAQGG 259
Query: 267 AGAGT------------------LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 308
GT LDFLRN+ FQ LR +VQ P +L+P+LQ+LG NP
Sbjct: 260 GARGTRTAGASLGGAAGGEGLSNLDFLRNNPHFQQLRQLVQQQPGMLEPILQQLGAGNPQ 319
Query: 309 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERL 360
L +LI ++Q FL+L++E +E QL ++VT EER+AIER+
Sbjct: 320 LAQLIGQNQEQFLQLLSEDIEDDT-----QLPPGT-HTISVTEEERDAIERV 365
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 28/101 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ + LK F I+ +P + + +K+ I +G D A+QQ LI+ G
Sbjct: 1 MKLSFRDLKQQKFTIDAEPSETIGQLKEKIAQEKGWD---AAQQKLIYSGELHFERHLRL 57
Query: 51 ---------------KVLKDVTTLEENKVAENSFVVVMLTK 76
K+L++ T+E + E FVV M++K
Sbjct: 58 ARDLNLLSDVRPSTGKILQNANTIESYNIEEKGFVVCMVSK 98
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 9/124 (7%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-----E 326
L LR++ Q LR +V NP ++QP++Q+L NP L +LI ++ +L+ +
Sbjct: 270 LSALRDNPQIAQLRELVAQNPALIQPLIQQLAGSNPQLAQLIAQNPEALFQLLGGENGLD 329
Query: 327 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+ GEG L A Q + +T EER+AIERLEA+GF R V+E +FAC+KNEELAAN
Sbjct: 330 FEDDGEGGGLPPGA----QVINITEEERQAIERLEALGFPRQAVIEAYFACDKNEELAAN 385
Query: 387 YLLD 390
YL +
Sbjct: 386 YLFE 389
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+++ + + V D+KK I +QG +P Q +I+ GKVL D T+E
Sbjct: 1 MKITVKTLQQKVFQLDAEGSETVGDLKKKINDLQG---HPVENQKIIYSGKVLPDDKTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V+M++K
Sbjct: 58 SCNIKEKDFLVLMVSK 73
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 12/129 (9%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E V+
Sbjct: 270 LDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVDDD 329
Query: 332 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 330 ---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFL 380
Query: 389 LDHMHEFED 397
D + +D
Sbjct: 381 FDQPEDDDD 389
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D A +Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQNKFTLDVEPTDLISTVKQRISEEKGWD---AKEQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVML 74
K+ E FVV M+
Sbjct: 58 SYKIEEKGFVVCMI 71
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 120/244 (49%), Gaps = 27/244 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRL-HLRLLHQL 119
+ KV ++ FVVVM V + + G P P ++++ + +
Sbjct: 60 DYKVTDSGFVVVM--SVSKPAKEG-------SASAPGNPAGEGRPTTDKKIPDVDVTESP 110
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
+ + + L + L G S+LV G N E VQ+++ MG
Sbjct: 111 SSKPDANSQPSLPTVTTTQSTTTNTL---------GFGESSLVTGENFERVVQELVSMG- 160
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVP-PVARASAGGQAGNPPAQTQAQ 237
+++ VIRA+RA +NNP+RA EYL SG IP V P R G ++ +P A A
Sbjct: 161 --FEKPLVIRAMRAGFNNPDRAFEYLSSGNIPNIDIVDQPSQR--EGSESVSPEAPGDAD 216
Query: 238 QPAA 241
P +
Sbjct: 217 TPGS 220
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 119/274 (43%), Gaps = 61/274 (22%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
V G+ T+Q+I++MG + RE V ALRAA+NNP+RAVEYL GIPE +
Sbjct: 142 FVVGTERNETIQRIMEMG---YQREEVEAALRAAFNNPDRAVEYLLMGIPEHLQHQQPQQ 198
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR---- 276
+ PA DLF Q G+ A + D
Sbjct: 199 LQQTTIQTEGATSANMELPAED-----------DLFAQAA--RGNQANQQSTDDTPPGSI 245
Query: 277 --NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-------- 326
+ ALR +V NP+ L P+L+ L + P L I + F+ ++ E
Sbjct: 246 GLTMEDLLALRQVVSGNPEALPPLLENLTTRYPQLREQIMANPEVFVSMLLEAVGDNLQH 305
Query: 327 ---------------PVEGGEGNVLGQLASAM-------PQA---------VTVTPEERE 355
P G V + SA+ P A +++T ++ +
Sbjct: 306 SLGNDLDGISELDQHPTANTNGEVTAEHDSAIVTETNEAPAAGEQPSNNYNISLTEQDEQ 365
Query: 356 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
AI RL +GF+R+LV++V+FAC+KNEE+AAN L
Sbjct: 366 AIGRLCELGFERSLVVQVYFACDKNEEIAANMLF 399
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 10/117 (8%)
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
N Q Q LR ++ NP ++QP++QE+ QNP L +L ++ +++ G++
Sbjct: 273 NHPQIQHLREIMAQNPALIQPVIQEIAAQNPQLAQLFAQNPEALAQILG-------GDLG 325
Query: 337 GQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
+ +P Q + VT EER AIERLEA+GF R V+E +FAC+KNEELAANYL D
Sbjct: 326 DEEEGGIPPGAQVIQVTEEERAAIERLEALGFPRQAVIEAYFACDKNEELAANYLFD 382
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+IE + D V+D+K+ I+ QG V Q LI+ GKVL D ++E
Sbjct: 1 MKITVKTLQQKVFQIEAEGTDTVADLKQKIQETQGHGV---DSQKLIYSGKVLPDSKSIE 57
Query: 61 ENKVAENSFVVVMLTK 76
++ E F+V+M++K
Sbjct: 58 SCEIKEKDFLVLMVSK 73
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 6/127 (4%)
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L+ E + G
Sbjct: 254 NLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLAEDM-G 312
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
EG + + VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 313 DEGEL-----PPGAHEIRVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFE 367
Query: 391 HMHEFED 397
E +D
Sbjct: 368 QPDEGDD 374
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPTETVGQVKEKIAREKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V M++K
Sbjct: 58 SYNIEEKGFIVCMVSK 73
>gi|402087037|gb|EJT81935.1| UV excision repair protein Rad23 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 377
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 82/127 (64%), Gaps = 6/127 (4%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E +
Sbjct: 253 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPEQFLGLLGEDAD 312
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
G QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 313 DDVPLPPGA------QAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLF 366
Query: 390 DHMHEFE 396
D + E
Sbjct: 367 DQPDDDE 373
>gi|326427438|gb|EGD73008.1| hypothetical protein PTSG_04717 [Salpingoeca sp. ATCC 50818]
Length = 127
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 274 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 333
FL F LR +V NP L +LQ L NP L++LI ++Q DF LIN P
Sbjct: 11 FLHIDPAFNQLRRLVHQNPAHLPSLLQHLASSNPDLVQLINDNQEDFYHLINAPSVAA-- 68
Query: 334 NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 393
+ Q Q + ++PE+ EAIERL A GFDRA + +FAC+K+E AAN+L +H +
Sbjct: 69 --MPQGPPPGAQGLQLSPEDAEAIERLVAFGFDRATAAQAYFACDKDENAAANWLFEHGN 126
Query: 394 E 394
E
Sbjct: 127 E 127
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLR + QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E E
Sbjct: 272 GNLDFLRTNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLQLLGEDAE 331
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
G QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 332 DDVPLPPGA------QAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLF 385
Query: 390 DHMHE 394
D +
Sbjct: 386 DQPED 390
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 22/95 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----------- 49
MKV + LK F +EV+P D +S VK+ I T +G D Q LI+
Sbjct: 1 MKVTFRDLKQQKFTLEVEPTDLISAVKERISTEKGWD---PKHQKLIYSGADEQNPAPTA 57
Query: 50 --------GKVLKDVTTLEENKVAENSFVVVMLTK 76
GK+LKD T+ + E FVV M+ K
Sbjct: 58 PPFLTNFLGKILKDEETVASYNIEEKGFVVCMVNK 92
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 118/261 (45%), Gaps = 41/261 (15%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 219
+ V G TV +I++MG ++R+ V RALRAA+NNP+RAVEYL GI P
Sbjct: 133 DFVVGQQRNETVDRIMEMG---YERDQVERALRAAFNNPDRAVEYLLMGI-------PEN 182
Query: 220 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPL---DLFPQGLPNMGSNAGA------- 269
AG + P Q Q + P DLF Q N +
Sbjct: 183 LQRAGARQQQPEQQAQQESQPQQESQPQQATEPQEGEDLFAQAEQRTQGNTASAEGAAAA 242
Query: 270 --------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
G++ + ALR +V NP+ L P+L+ L + P L I + F+
Sbjct: 243 DGAQGGVPGSIGL--TMEDLLALRQVVSGNPEALAPLLESLSSRYPQLREQIMSNPEVFV 300
Query: 322 RLINEPV-----------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 370
++ E V E G+ A+ V +T + +AI RL +GF+RA+
Sbjct: 301 SMLLEAVGDNLQDAMTDLETGDDPEGAAAAAEGAFQVELTESDEQAITRLCELGFERAVA 360
Query: 371 LEVFFACNKNEELAANYLLDH 391
++V+FAC KNEE+AAN LL+
Sbjct: 361 IQVYFACGKNEEIAANMLLND 381
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ P V D K + T + + SQ LI+ GKVL+D L+
Sbjct: 2 INIIFKDFKKEKISLELDPSSSVKDAKVRLATEKSCE---ESQIKLIYSGKVLQDAKNLQ 58
Query: 61 ENKVAENSFVVVMLT 75
E+ + + V+ M++
Sbjct: 59 ESGLKDGDQVIFMIS 73
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 92/171 (53%), Gaps = 36/171 (21%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ +QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQAPEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIK 62
Query: 61 ENKVAENSFVVVMLTKV 77
E + E +FVVVM+TK
Sbjct: 63 EYHIDEKNFVVVMVTKA 79
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 121/259 (46%), Gaps = 54/259 (20%)
Query: 158 ASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
ASN V GS V +I++MG ++RE V RALRAA+NNP+RAVEYL GIP+
Sbjct: 127 ASNDPGFVVGSQRNEAVDRIMEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPDHLQ 183
Query: 215 VPPVARASAGGQAGNPPAQTQAQQPAAP----APTSGP--NANPLDLFPQGLPNMGSNAG 268
+AQ+P + A T+G + N DLF Q N ++
Sbjct: 184 QQQQQPQVT----------QEAQEPTSGSTEVAQTAGEQGDINEDDLFAQAAQNNATDGS 233
Query: 269 AGTL-------DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 321
G + ALR +V NP+ L P+L+ L + P L I + F+
Sbjct: 234 TGASAAGSQPGSIGLTMEDLLALRQIVAGNPEALGPLLENLSTRYPQLREQILSNPEVFV 293
Query: 322 RLINEPVEGGEGNVLGQLAS---------------------AMPQAVTVTPEEREAIERL 360
++ E V G+ N+ G + S A P +++T + +AI RL
Sbjct: 294 SMLLEAV--GD-NLQGSMDSEFDNLGLTEGAEGDEGEESELAQP-PISLTEADEQAISRL 349
Query: 361 EAMGFDRALVLEVFFACNK 379
+GF+R+LV++V+FAC+K
Sbjct: 350 CELGFERSLVVQVYFACDK 368
>gi|328865496|gb|EGG13882.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 130
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 10/121 (8%)
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
LRN QF LR +Q NPQ++ +LQ+ + NP L+R I E+ +FLRL + + N
Sbjct: 17 LRNHPQFAVLREAIQRNPQVITELLQQYSQSNPQLVRQITENPQEFLRLFQDQQGAPQPN 76
Query: 335 VLGQLASAMPQAVTVTPEEREAIERL-EAMGFDRALVLEVFFACNKNEELAANYLLDHMH 393
+ A+ VTPEER AIERL + G D+ V+E +FAC+KNEEL A+YL +
Sbjct: 77 QV---------AIQVTPEERAAIERLIQLTGMDKHEVIEAYFACDKNEELTASYLFERAD 127
Query: 394 E 394
E
Sbjct: 128 E 128
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E +
Sbjct: 243 GNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDAD 302
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
G QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 303 DDVPLPPGA------QAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLF 356
Query: 390 DHMHEFE 396
D + E
Sbjct: 357 DQPEDDE 363
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P D++S VK+ I +G + Q LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDQISAVKEKIAAEKG---WEPKTQKLIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E FVV M+ K
Sbjct: 58 SYNIEEKGFVVCMVNK 73
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 131/295 (44%), Gaps = 57/295 (19%)
Query: 148 HSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
S G AS V GS TV++I++MG +DR V ALRAA+NNP+RAVEYL +
Sbjct: 118 ESTGAAVGSGAS-FVTGSARSQTVERIMEMG---YDRAQVEMALRAAFNNPDRAVEYLLT 173
Query: 208 GIPE--QTAVPPVARASAG-GQAGNPPAQTQAQQPAA---------PAPTSGPNANPLDL 255
GIPE Q + AR SA +G P AQ + + + + DL
Sbjct: 174 GIPEHLQNSSAFSARQSASVAASGVPETGATAQTGTETETGTGTGTASEVNDEHVHEDDL 233
Query: 256 FPQGLPNMGSN-----AGAGTLDFLRNSQQFQA----------LRTMVQANPQILQPMLQ 300
F Q N T ++S Q LR ++ +P+ L P+L+
Sbjct: 234 FAQAAAVGSENPTTGADATTTGTVSQDSSPLQTIGLTFEDLVQLRGVINGDPEALPPLLE 293
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLI----------------------NEPVEGGEGNVLG- 337
L ++ P L I + F+ ++ +E + G+G+
Sbjct: 294 SLSERYPELREQIMSNPEMFISMLLQAVGGALPSEALDDASAYQADSEAIAEGDGSTASA 353
Query: 338 ---QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
A A + ++++ E+ IERL +GF+R LV++++ AC+KNEE+ AN L
Sbjct: 354 NQDTAADAQNELLSLSEEDLTTIERLCELGFERDLVIQIYVACDKNEEVTANMLF 408
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 7/124 (5%)
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL--INEPVEGGE 332
L NS Q Q +R VQ NP ++QP+LQ++ NP L +++ ++ L + + +GGE
Sbjct: 228 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDEDDGGE 287
Query: 333 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
A V +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL +
Sbjct: 288 -----DYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEIA 342
Query: 393 HEFE 396
E E
Sbjct: 343 EEDE 346
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+ G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 51 --KVLKDVTTLEENKVAENSFVVVMLTK 76
K+LKD T+ + K+ E F+VVM++K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSK 85
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 84/130 (64%), Gaps = 12/130 (9%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L LI + FL+L+ E +
Sbjct: 263 GNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIATNPDQFLQLLGEYAD 322
Query: 330 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
+ +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN
Sbjct: 323 DD---------TPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAAN 373
Query: 387 YLLDHMHEFE 396
+L D + E
Sbjct: 374 FLFDQPEDDE 383
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G + Q LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WEPKLQKLIYSGKILKDEETVG 57
Query: 61 ENKVAENSFVVVML 74
+ E FVV M+
Sbjct: 58 SYNIEEKGFVVCMV 71
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 7/124 (5%)
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL--INEPVEGGE 332
L NS Q Q +R VQ NP ++QP+LQ++ NP L +++ ++ L + + +GGE
Sbjct: 219 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDEDDGGE 278
Query: 333 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
A V +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL +
Sbjct: 279 -----DYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEIA 333
Query: 393 HEFE 396
E E
Sbjct: 334 EEDE 337
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+ G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 51 --KVLKDVTTLEENKVAENSFVVVMLTKV 77
K+LKD T+ + K+ E F+VVM++K+
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKL 86
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 82/127 (64%), Gaps = 6/127 (4%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L LI + FL+L+ E +
Sbjct: 264 GNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEDAD 323
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
G QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 324 DDVPLPPGA------QAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLF 377
Query: 390 DHMHEFE 396
D + E
Sbjct: 378 DQPDDDE 384
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTELISAVKEKISAEKGWD---PKLQKLIYSGKILKDEETVA 57
Query: 61 ENKVAENSFVVVML 74
+ E FVV M+
Sbjct: 58 SYNIEEKGFVVCMV 71
>gi|68066300|ref|XP_675133.1| DNA repair protein RAD23 [Plasmodium berghei strain ANKA]
gi|56494136|emb|CAH99316.1| DNA repair protein RAD23, putative [Plasmodium berghei]
Length = 368
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 122/252 (48%), Gaps = 35/252 (13%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
L+ G L+ T+ I MG ++RE V +A+ AYNNP A++YL +G Q +
Sbjct: 132 LLTGDKLKETIDNICAMG---FERELVQKAMTLAYNNPNVAIDYLTNGF--QDIIGDGHD 186
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPTSG--PNANPLDLFP-QGLPNMGSNAGAGTLDFLRN 277
S P++ ++ + S N N LD Q +P + S + LRN
Sbjct: 187 ISEIKD----PSENPNERDEKYSNLSNLLMNYNLLDENERQEMP-VNSES-------LRN 234
Query: 278 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 337
S F +R +NPQ + +L+ +G+ +P L+ I+E+Q +FL + + + N
Sbjct: 235 SPFFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNAL-QNYDTDNNNSEN 293
Query: 338 QLASAMPQA--------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
L ++ E E++ +LE++GF + + LE F AC+KNEE+
Sbjct: 294 DLIPNYEYTDETNQNNDNFNIPITSLNESEMESVRKLESLGFPKHVALEAFIACDKNEEM 353
Query: 384 AANYLLDHMHEF 395
AANYL ++M+++
Sbjct: 354 AANYLFENMNDY 365
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ T EI V D +SD+KK IE V P +Q LI G +L +
Sbjct: 1 MKIKVRTLQNTEEEINVDSNDTISDLKKKIENVFPE--MPCDKQKLIFSGNIL-----MN 53
Query: 61 ENKVA----ENSFVVVMLTKVI 78
E+KV EN V+VM+T+ I
Sbjct: 54 EHKVVDILKENDIVIVMVTRKI 75
>gi|195037074|ref|XP_001989990.1| GH18491 [Drosophila grimshawi]
gi|193894186|gb|EDV93052.1| GH18491 [Drosophila grimshawi]
Length = 282
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 54/223 (24%)
Query: 172 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 231
Q++ D+ ++ + V ALRA++N+PERA+EYL +GIP Q + +AG G
Sbjct: 111 QRVRDLILMGYEEQDVRAALRASFNHPERAIEYLITGIPNQA---DQQQTTAGSHDGAEV 167
Query: 232 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 291
++ A L++L +F +R +V+ N
Sbjct: 168 SE----------------------------------AAERLNYLATDPRFAHVRDLVRQN 193
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 351
P++L+ +L L + +P I+ +Q +F+ ++N+P A ++
Sbjct: 194 PELLELVLSHLRETDPAAFATIRNNQEEFVNMLNQPT-----------------AADLSS 236
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
++ A+ERL A+GF+R +V+ V+ AC+KNEEL A+ L E
Sbjct: 237 DDEAAVERLMALGFERDVVVPVYLACDKNEELTADLLFRDTDE 279
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 80/158 (50%), Gaps = 42/158 (26%)
Query: 169 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 228
A V Q+ DMG + E V L+AA+ NP+RAVEYL +GIPE P
Sbjct: 145 ANVGQLCDMG---FPEEQVRSCLQAAFGNPDRAVEYLMNGIPENLVNP------------ 189
Query: 229 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 288
AA APT+G AG+L+ LRN QF + R +V
Sbjct: 190 ---------TSAAAAPTTG------------------GPSAGSLEQLRNHPQFASFREVV 222
Query: 289 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
+ NP L +LQ++G QNP L+RLI E+Q+ FL+++NE
Sbjct: 223 RTNPAALPALLQQIGGQNPELLRLIHENQSQFLQMLNE 260
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F IE +P D V+ VK I+ Q +PA QQ LIH GK+LKD T L
Sbjct: 1 MKLTVKTLQGNAFSIEAEPTDTVAVVKTKIQETQE---FPAIQQKLIHAGKILKDDTALS 57
Query: 61 ENKVAENSFVVVMLTKV 77
E + EN F+VVM++K
Sbjct: 58 EYNIKENDFIVVMVSKA 74
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 85/121 (70%), Gaps = 6/121 (4%)
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
+LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++ NP L ++I ++ F++L+ E +
Sbjct: 270 SLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVAAGNPQLAQIITQNPEQFMQLLAE--DS 327
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
G+ L A Q ++VT EEREAIERL +GF+R LV++ +FAC+KNEELAAN+L D
Sbjct: 328 GDDVALPPGA----QQISVTEEEREAIERLCRLGFERDLVIQAYFACDKNEELAANFLFD 383
Query: 391 H 391
Sbjct: 384 Q 384
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F++E +P D + VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFQVEAEPTDTIGSVKEKISKEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+V M +K
Sbjct: 58 SYKIEEKGFIVCMTSK 73
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 109/241 (45%), Gaps = 86/241 (35%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AA + V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 156 AAPSTVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 206
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QP+ A AG L+FLR
Sbjct: 207 ----GSPEPEHGSVQESQVSEQPSTEA-----------------------AGENPLEFLR 239
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 240 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL-------------------------- 273
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+L+A+GF +LV++ +FAC KNE LAAN+LL F+
Sbjct: 274 ----------------------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFD 309
Query: 397 D 397
D
Sbjct: 310 D 310
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|164665690|gb|ABY66299.1| DNA repair protein RAD23 [Brassica napus]
Length = 327
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG FEI+V ED V+DVKKNIETV G A++QMLIH+GKVL+D TT+E
Sbjct: 1 MKIFVKTLKGDRFEIQVNLEDSVADVKKNIETVMG---VTAAEQMLIHKGKVLEDETTME 57
Query: 61 ENKVAENSFVVVMLTK 76
N+V+E S + VM K
Sbjct: 58 ANEVSEKSIIAVMKRK 73
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 52/211 (24%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
ASN+ S E+ +QQIL+M G+W RE V AL A N+ ++AVEYLY G+PEQ+
Sbjct: 98 TASNMTYESISESGIQQILEMVSGTWSREAVAYALYFASNDLDKAVEYLYFGLPEQS--- 154
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
P +T+ Q P + +A +LD LR
Sbjct: 155 ------------EDPHKTEGTQEHTQEPEASQDA----------------IQEWSLDALR 186
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI------------ 324
N+ +F+ +R +VQ++P L+ +L+ + + NP L++ I +++ DFLRL+
Sbjct: 187 NTPEFEYVRPLVQSDPSFLEEILEVIEEHNPQLVQFILDNKADFLRLVLDQPQEHQDDDV 246
Query: 325 -----NEPVEGGE-GNVLGQLASA---MPQA 346
NEP GGE GN +G+ PQA
Sbjct: 247 LHFQSNEPNNGGESGNQVGKFEETEVEQPQA 277
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LD LR+ QF LR +VQ NP LQ +L ++G+Q P L++ I +Q +FL+++NEP+
Sbjct: 216 LDALRSHPQFDDLRRLVQTNPSTLQAVLSQIGQQQPDLLQAINANQAEFLQMMNEPMISA 275
Query: 332 --EGNVLGQLASAM-PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
+ V + AM Q + ++ EE A++RL MGFDR+ + + AC+KNE LAAN L
Sbjct: 276 MPQEQVQQYMNMAMQAQVLRLSEEEMAAVDRLTEMGFDRSEAAQAYLACDKNEALAANLL 335
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTLKG F +EV+ E V++VK I+T + PAS LIH GKVLKD +E
Sbjct: 1 MNLTVKTLKGGKFTVEVEAEKTVAEVKVAIQTNKD---LPASSMKLIHSGKVLKDEDKIE 57
Query: 61 ENKVAENSFVVVMLTKV 77
+ N F+VVM+ KV
Sbjct: 58 SCNIKPNDFLVVMIAKV 74
>gi|339249469|ref|XP_003373722.1| putative UBA/TS-N domain protein [Trichinella spiralis]
gi|316970103|gb|EFV54095.1| putative UBA/TS-N domain protein [Trichinella spiralis]
Length = 521
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 126/293 (43%), Gaps = 94/293 (32%)
Query: 157 AASNLVAGSNLEATVQQILD---------MGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
A+SN V ++ T++ LD MG + + +V+ AL+ AYNNP+ A++YL S
Sbjct: 260 ASSNTVTANDRHETMELQLDDNLVNELCMMG---FRKSSVVVALKMAYNNPDVAIDYLTS 316
Query: 208 GIP----EQTAVPPVARASAGGQ-AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 262
G+ ++ +A++ GQ GN P Q
Sbjct: 317 GVDLIRLKERIDNEIAQSRTVGQDGGNEPEYDGIAQ------------------------ 352
Query: 263 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 322
LR++ + LR +VQ +P +L ++ E+ + NP++ RLIQE+Q F++
Sbjct: 353 ------------LRHNPAIKQLRLVVQRDPTMLHDVIMEIERANPNITRLIQENQEAFVQ 400
Query: 323 LINEPVEGGE--------------------------------------GNVLGQLASAMP 344
L+NE V+ E +
Sbjct: 401 LLNERVDQNEPMKQEVQKQQQQPQQQQQQQQQQPQQQRRRQQQQQQHQQQEQSTSSGTRI 460
Query: 345 QAVTVTPEEREAIERLEA---MGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
+ +T EER+A++R +A MGF + V+E +FAC+KNE LAAN+LL + E
Sbjct: 461 FRIHLTAEERDAVDRCQALVAMGFSESQVIEAYFACDKNEALAANFLLQSLEE 513
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 121/235 (51%), Gaps = 37/235 (15%)
Query: 169 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGG 225
A + I +M ++R + A+RAA+NNPERAVEYL +GIP +Q A P + A A
Sbjct: 147 ARAEAIANMEAMGFERSQIDIAMRAAFNNPERAVEYLLNGIPPHLQQEAQPSRSPAGASA 206
Query: 226 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-----------GTLDF 274
PA + N N DL Q GS + G L++
Sbjct: 207 APSAAPAAPE-----------DDNVNLFDLAAQQGRGSGSRGASGAGAAAQQQGLGNLEW 255
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
LR++ QFQ LR +VQ PQ+L+P+LQ L NP L +I + FL L++E
Sbjct: 256 LRHNSQFQQLRQVVQQQPQMLEPILQTLSASNPQLAHVIATNPDQFLELLSE-------- 307
Query: 335 VLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
G + +P ++VT EER+AIERL +GF + ++ +FAC+KNEELAAN
Sbjct: 308 -TGDDDAPLPPGAHQISVTEEERDAIERLVRLGFTQDQAIQAYFACDKNEELAAN 361
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K LK F +E +P D +S VK+ I QG D P SQ+ LI+ GK+LKD T+E
Sbjct: 1 MKITIKDLKQNKFTVEAEPTDLISTVKQKIADSQGWD--PKSQK-LIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV ++ K
Sbjct: 58 SYKIEEKGFVVCVVQK 73
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 83/123 (67%), Gaps = 7/123 (5%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLRN+ QFQ LR +VQ P +L+P+LQ++ +P L ++I ++ F++L+ E G
Sbjct: 272 LDFLRNNPQFQQLRQVVQQQPGMLEPILQQVAAGSPQLAQIITQNPEQFMQLL---AEDG 328
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+ + LA+ ++ VT EER+AIERL +GF+R V++ +FAC+KNEELAAN+L D
Sbjct: 329 DDD----LAAPPGGSIAVTEEERDAIERLCRLGFERQDVIQAYFACDKNEELAANFLFDQ 384
Query: 392 MHE 394
E
Sbjct: 385 PDE 387
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K LK F I+ +P + + +K IE+ +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MRLTFKDLKQAKFTIDAEPSETIGTLKSKIESEKG---WETSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+V M +K
Sbjct: 58 SYKIEEKGFIVCMTSK 73
>gi|21355163|ref|NP_651212.1| CG10694 [Drosophila melanogaster]
gi|7301100|gb|AAF56234.1| CG10694 [Drosophila melanogaster]
gi|19527925|gb|AAL90077.1| AT15685p [Drosophila melanogaster]
gi|220949914|gb|ACL87500.1| CG10694-PA [synthetic construct]
gi|220958714|gb|ACL91900.1| CG10694-PA [synthetic construct]
Length = 290
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 51/227 (22%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
V ++ MG G E V ALRA++N+PERA+EYL +GIP++ S G A P
Sbjct: 115 VSDLMSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVV-------SEQGLAAIP 164
Query: 231 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
QT Q L L +R M+
Sbjct: 165 SVQTSDQ----------------------------------LQQLMADLNITRMREMINQ 190
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 350
NP+++ ++ L + +P + Q +Q + + +I+ GG ++ +T+T
Sbjct: 191 NPELIHRLMNRLAETDPATFEVFQRNQEELMNMIS----GGASRTPNEIEHLQ---ITLT 243
Query: 351 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EE A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 244 AEETAAVGRLEALGFERVMAVQAYLACDKDEQLAAEVLIRQSEEDRD 290
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 6/125 (4%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E +
Sbjct: 278 LDFLRHNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESADDD 337
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
G QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 338 VPLPPGA------QAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 391
Query: 392 MHEFE 396
+ E
Sbjct: 392 PDDDE 396
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F +EV+P +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTYLISAVKEKISAEKGWD---PKHQKLIYSGKILKDDETVA 57
Query: 61 ENKVAENSFVVVMLTKVIRF 80
+ E FVV M+ K F
Sbjct: 58 SYNIEEKGFVVCMVNKACLF 77
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 339
Q Q LR +V+ NP ++QP++Q+L QNP + + + + L+L+ EG E
Sbjct: 295 QIQQLREIVRQNPALIQPLIQQLAAQNPQMAQALAANPDMLLQLLGA-GEGDEEGGPEGE 353
Query: 340 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
Q ++VT EEREAI RLEA+GF R VLE +FAC+KNEELAANYL +
Sbjct: 354 VPPGAQVISVTVEEREAIARLEALGFPRHAVLEAYFACDKNEELAANYLFE 404
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKT + F+I+++P D + +K IE+ +PA Q +I+ GK+L D T+E
Sbjct: 1 MKITVKTTQQKVFQIDIEPTDTIGSLKAKIESAHN---HPAPTQKIIYSGKILSDDKTIE 57
Query: 61 ENKVAENSFVVVML 74
V E F V+M+
Sbjct: 58 SCGVKEKDFFVLMV 71
>gi|341902355|gb|EGT58290.1| hypothetical protein CAEBREN_15682 [Caenorhabditis brenneri]
Length = 316
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 66/251 (26%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV----PPVARASA 223
E ++ I+++G DRE + LRAA + +RA YL++GIPE + V P RA
Sbjct: 107 EESIAAIMEIGA---DREQAVAVLRAARWSRDRAAGYLFNGIPEDSVVQEPAPQEPRAEE 163
Query: 224 -GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 282
GG+A A+ +AQ+ LD L N Q +
Sbjct: 164 QGGEAPAVDAEAEAQE------------------------------HEDLDILANLPQLE 193
Query: 283 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 342
+R +VQ NP+ L P+LQ++ NP L+R IQ +Q +F+ ++N G GQ
Sbjct: 194 EIRQLVQQNPENLAPILQQIAAHNPRLVRTIQNNQQEFMDMLN----GA-----GQYDQN 244
Query: 343 MP------------------QAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEEL 383
+P + V + E+ +AI R++A+ A V+E +FAC+++EE
Sbjct: 245 LPGAGAGAAGAAAGGQGGRRRVVHLNQEQLDAINRIKAIVNASEATVVEAYFACDQDEEA 304
Query: 384 AANYLLDHMHE 394
A N++ + M E
Sbjct: 305 AINFIFNTMDE 315
>gi|408389579|gb|EKJ69020.1| hypothetical protein FPSE_10799 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 6/105 (5%)
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 351
PQ+L+P+LQ+LG NP L LI + FL+L+ E + G QA++VT
Sbjct: 12 PQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEYADDDVPLPPGA------QAISVTE 65
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D + E
Sbjct: 66 EERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLFDQPEDDE 110
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 16/133 (12%)
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH----------QTDFLRLI 324
RNS F +R M+ NP ++QP++Q+L NP L +++ ++ +
Sbjct: 285 FRNSPMFTQIRQMIAQNPALVQPLIQQLAATNPQLAQVMNQNPQLLLQLLAGEEGEGDEG 344
Query: 325 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
E GEG V G + VTPEE AIERL +GF R L ++ +FAC+KNEE+A
Sbjct: 345 MEWEGDGEGGVPGVTT------IQVTPEENAAIERLIGLGFPRDLAIQAYFACDKNEEVA 398
Query: 385 ANYLLDHMHEFED 397
ANYL D+ E D
Sbjct: 399 ANYLFDYAFEQND 411
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++ +P D V D+K I Q +P QQ +I+ GK+L D T+E
Sbjct: 1 MKLTFKTLQQKQFTLDAEPSDTVLDLKHRISQDQD---FPVEQQKIIYSGKILSDTQTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+VVM++K
Sbjct: 58 ACKIKEKDFLVVMVSK 73
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 126/292 (43%), Gaps = 70/292 (23%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
V GS T+++I++MG ++R V ALRAA+NNP+RAVEYL GIPE P
Sbjct: 158 FVTGSQRNETIERIMEMG---YERSQVESALRAAFNNPDRAVEYLLMGIPEHLQAAPQPA 214
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPT---------------SGPNANPLDLFPQ-GLPNMG 264
S G A +A APT G +A+ +LF Q G
Sbjct: 215 GS-----GVVAASQSMDTSSAIAPTVESATAGVTTATTHTGGASAHEDNLFAQAAAAESG 269
Query: 265 SNAG------AGTLDFLRNS--------QQFQALRTMVQANPQILQPMLQELGKQNPHLM 310
AG GTL + + LR ++ +P+ L P+L+ L + P +
Sbjct: 270 DTAGVTEASATGTLSHGSSPLQTIGLTFEDLMQLRGVINGDPEALPPLLESLSDRYPEVR 329
Query: 311 RLIQEHQTDFLRLINEPV-------------------EGGEGNVLGQLASAMPQAVTV-- 349
I + F+ ++ + V EG +GN + A P V
Sbjct: 330 EQIMGNPEMFISMLLQAVGGAIPSDSLDDAMSFRTEGEGEDGNTHAN-SEANPDGAVVSV 388
Query: 350 ----------TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
T ++ AI+RL +GFDR LV++V+ AC+KNE++ A+ L ++
Sbjct: 389 SEAAQDRLQLTSDDITAIDRLCELGFDRDLVVQVYVACDKNEDITADMLFNN 440
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 42/229 (18%)
Query: 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 225
+++ VQ+I +MG + E AL NNP+RAVEYL S I + +GG
Sbjct: 148 DIQIKVQRITEMG---YSLEEARIALEICDNNPDRAVEYLLSEIATSSMGGGGGGGGSGG 204
Query: 226 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 285
+ T + L FLR F ++
Sbjct: 205 GSAAVSGGTTQE--------------------------------SRLAFLREHPTFLEMK 232
Query: 286 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-----LGQLA 340
++Q +P +L +LQ++ NP LMR+I E+Q +FL LINE E G + L A
Sbjct: 233 RLLQEDPSLLPHLLQKIQSSNPDLMRIISENQVEFLSLINEGTEEPTGRMGVPRELETTA 292
Query: 341 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
+AM ++T + + +AI+RL+A+GF LV++ + AC +NE AA++L+
Sbjct: 293 AAMVDSLTQS--DMDAIDRLKALGFPEHLVIQAYIACERNEYQAADFLV 339
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F+IEV E D V +K+ D YP +Q LI+ GK+++D L
Sbjct: 1 MKITIKTLKQEAFQIEVDVEKDTVRTLKEKFFQESKQD-YPVERQRLIYLGKIMEDDLPL 59
Query: 60 EENKVAENSFVVVMLTK 76
+ + FVVVM K
Sbjct: 60 SHYSLDDKKFVVVMNKK 76
>gi|224587227|gb|ACN58624.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 102
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 73/103 (70%), Gaps = 8/103 (7%)
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQA-----VTVTPEE 353
+LG++NP L++ I ++Q F++++NEP G G+V +G L +A+ + + VTP+E
Sbjct: 1 QLGRENPQLLQQISQYQELFIQMLNEPA-GEVGDVPEVGDLGAAVEEGAPVNYIQVTPQE 59
Query: 354 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+ E E
Sbjct: 60 KEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQGFEDE 102
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
Length = 383
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 334
L+++ Q LR +VQ NP ++QP++Q+L + NP + + I +H ++L+ + +G+
Sbjct: 262 LQSNPQIAQLRELVQQNPALVQPLVQQLAQSNPAIAQAIIQHPEAIMQLLGVDGDDFDGD 321
Query: 335 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
+ VT EE+ AI+RLEAMGF R V+E +FAC+KNEELAANYL D+ E
Sbjct: 322 DDMNPPPGT-HVMHVTEEEQAAIQRLEAMGFPRQKVIEAYFACDKNEELAANYLFDNGFE 380
Query: 395 FED 397
+D
Sbjct: 381 DDD 383
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKT + F+I+V+ + V +K+ I G +P + Q +I+ GK+L D T+E
Sbjct: 1 MKITVKTTQQKVFQIDVEGPETVGVLKQKISDAHG---HPVASQKIIYSGKILPDDKTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V+M++K
Sbjct: 58 SCGIKEKDFLVLMVSK 73
>gi|238582807|ref|XP_002390045.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
gi|215452995|gb|EEB90975.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
Length = 151
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 8/126 (6%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 331
++ LRN+ Q Q LR + +P+ Q ++Q+L Q P L++ ++ F+RL++ +
Sbjct: 32 IEALRNNPQIQQLREHIAQHPESAQALIQQLAAQYPQLIQTFAQNPDAFIRLLDLDPQS- 90
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+A ++VT EER AIERLEA GF R VLE + AC+K+E +AANYL +H
Sbjct: 91 -------MAPQGSHVISVTEEERAAIERLEAFGFPRHKVLEAYLACDKDETMAANYLFEH 143
Query: 392 MHEFED 397
+E +D
Sbjct: 144 GYEDDD 149
>gi|195573349|ref|XP_002104656.1| GD21063 [Drosophila simulans]
gi|194200583|gb|EDX14159.1| GD21063 [Drosophila simulans]
Length = 288
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 57/229 (24%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
V ++ MG G E V ALRA++N+PERA+EYL +GIP++ A S G A P
Sbjct: 115 VNDLMSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVA-------SEQGLAAVP 164
Query: 231 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
Q Q L L +R M+
Sbjct: 165 NVQASEQ----------------------------------LQHLLADPSITRMREMLNQ 190
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAMPQAVT 348
NP+++ ++ L + +P + +Q DFL +I+ GG N +G L +T
Sbjct: 191 NPELMHRLMDRLAETDPATFEALGSNQ-DFLNMIS----GGARRTNEVGHLE------IT 239
Query: 349 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+T EE A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 240 LTAEEAAAVGRLEALGFERVMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 58/240 (24%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-TAV 215
+ + L++G + ++Q++ MG + RE + A++AA+NNP+RAVEYL +GIP T+
Sbjct: 124 SGTGLLSGPEYDKAIEQLMSMG---FQREECVNAMKAAFNNPDRAVEYLLNGIPPGVTSH 180
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
PP AS GQ PPA AQQP G PN
Sbjct: 181 PPAPVASGQGQ---PPA---AQQPV------------------GQPN------------- 203
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQ----NPHLMRLIQEHQTDFLRLINEPVEGG 331
Q Q LR + Q NPQ + +L +L +Q NP L + ++ L+++
Sbjct: 204 ----QIQQLRQLYQQNPQAVLQLLPQLLQQIQQTNPELHAQVSQNPEMLLQMLMG----- 254
Query: 332 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
GQ P ++ +T +E + IE + +GF + LE + AC+KN E+A NYL +
Sbjct: 255 ----AGQQQGPPPGSIQLTQQEFKDIETIMQLGFTKQDSLEGYIACDKNVEMAINYLFEK 310
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G +F ++V+ D +SDVK+ I V+ +V QQ L+ +G +L D TT+
Sbjct: 1 MKIIIKTLSGQNFPLDVEGSDTISDVKEKIFQVKQFEV---GQQKLLRKGTLLDDKTTIA 57
Query: 61 ENKVAENSFVVVMLT 75
E + EN F+VVM+
Sbjct: 58 ELGIQENEFLVVMVN 72
>gi|195331506|ref|XP_002032442.1| GM26556 [Drosophila sechellia]
gi|194121385|gb|EDW43428.1| GM26556 [Drosophila sechellia]
Length = 288
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 57/229 (24%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
V ++ MG G E V ALRA++N+PERA+EYL +GIP++ A S G A P
Sbjct: 115 VNDLMSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVA-------SEQGLAAVP 164
Query: 231 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
Q Q L L +R M+
Sbjct: 165 NVQASEQ----------------------------------LQHLLADPSITRMREMLNQ 190
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAMPQAVT 348
NP+++ ++ L + +P + +Q DFL +I+ GG N +G L +T
Sbjct: 191 NPELMHRLMDRLAETDPATYEALGRNQ-DFLNMIS----GGARRTNEVGHLE------IT 239
Query: 349 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+T EE A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 240 LTAEEAAAVGRLEALGFERVMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus anophagefferens]
Length = 371
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 99/227 (43%), Gaps = 47/227 (20%)
Query: 173 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 232
Q+ MG G D+ AL AA N + AVE+L +GIP++ A+ G
Sbjct: 139 QLDAMGFGHADQSRA--ALEAAMGNVDLAVEFLMNGIPDEAAL-------TGANLDGDGD 189
Query: 233 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 292
A+P T LR QF LR +QANP
Sbjct: 190 AAMDDAGASPLAT-----------------------------LRAHPQFDDLRRTIQANP 220
Query: 293 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAM 343
LQ +L +G+ +P L+ LI +Q +FL+++NEP+ G G
Sbjct: 221 GALQQVLAGIGRDSPELLALIHANQAEFLQMMNEPLLGAISGGGGMGGGGRGPPGGGGGA 280
Query: 344 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
V +T EE +A+ RL+ +GF R ++ + AC+KNE LAAN L D
Sbjct: 281 GNVVRLTREEADAVGRLQELGFSRDDAVQAYLACDKNESLAANLLFD 327
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V VKTL+G F++E PE + VK IE Q A+ LIH GKVLKD TL
Sbjct: 1 MLVAVKTLEGRLFKVEAAPESTIGAVKGLIEASQPE--LKAAAMKLIHSGKVLKDEDTLA 58
Query: 61 ENKVAENSFVVVMLTKVIR 79
+ V E SF+V M+TK R
Sbjct: 59 DKGVTEQSFLVCMVTKPKR 77
>gi|195504946|ref|XP_002099297.1| GE23445 [Drosophila yakuba]
gi|194185398|gb|EDW99009.1| GE23445 [Drosophila yakuba]
Length = 297
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 110/254 (43%), Gaps = 74/254 (29%)
Query: 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
DV ASN E V++++ MG G D V ALRA++N+PERA+EYL +GIP+
Sbjct: 103 DVTPSIASN-------EQLVRELMSMGYGEQD---VRSALRASFNHPERAIEYLINGIPQ 152
Query: 212 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 271
+ + P Q A+ P S
Sbjct: 153 EAS----------------PQQELAEIP-------------------------SGQSTEE 171
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI------- 324
L L + +R M++ NP+++Q +++ L + +P +Q Q F+ ++
Sbjct: 172 LQHLMADPRLTRMREMIRENPELMQLIMERLAETDPAAFEAVQHDQEGFMSMLSGAAGSA 231
Query: 325 ----NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 380
+ P EG V ++ EE A+ERLEA+GF+R + ++ + AC+K+
Sbjct: 232 GGASHNPDEGEHFQV------------ALSAEEAAAVERLEALGFERVMAVQAYLACDKD 279
Query: 381 EELAANYLLDHMHE 394
E+LAA L E
Sbjct: 280 EQLAAEVLFRESEE 293
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 125/288 (43%), Gaps = 62/288 (21%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
+ G LE+ +Q +++MG ++R+ V RA+RAA+NNP+RAVEYL +GIPE A PP A
Sbjct: 158 FLTGGALESAMQSMMEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHLANPPAAP 214
Query: 221 ASAGGQAGNPPAQTQAQQ------------------PAAPAPTSGPNANPLDLFPQGLPN 262
+ A + QT + PA PA T P +LF
Sbjct: 215 QPSSTGAASAGEQTPSAAGGAPATPAAPSAGAGARVPATPA-TPSPAGRAGNLFEAAAAA 273
Query: 263 -------------------------------MGSNAGAG--TLDFLRNSQQFQALRTMVQ 289
+G + G+G +D L N L+ +VQ
Sbjct: 274 QQAGRGGAGAGAAGAAASAGGGAGAGAAGALLGEDDGSGEQVID-LGNPAMLAQLQQLVQ 332
Query: 290 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 349
NP LQP++Q + + NP L + H + + G+ + +P +
Sbjct: 333 QNPAALQPLVQAIAQSNPQLAEAMN-HDPQGVLALLAGGAAAGGDEM-----ELPTLAEL 386
Query: 350 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ ++R +E++ AMG + +E +F C KN E+A Y ++ +FED
Sbjct: 387 SDDDRAGVEQIVAMGIPESKAIESYFMCGKNVEMAVQYYFENPQDFED 434
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K I+ QG + Q +I GK+L D T+
Sbjct: 1 MKLLIKSLAGGNFHLDAELTDTIGSIKAKIQKEQG---HAPELQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVML 74
+ + E F+VVM+
Sbjct: 58 DCNIKEKDFLVVMV 71
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 78/117 (66%), Gaps = 6/117 (5%)
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L+ E +
Sbjct: 278 GNLDFLRNNTQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPEQFLALLGE--D 335
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 386
E L A QA+ VT EER+AIERL +GF R ++ +FAC+KNEELAAN
Sbjct: 336 ADEDAPLPPGA----QAIAVTEEERDAIERLCRLGFGREQAIQAYFACDKNEELAAN 388
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IEV+P D +S VK+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVIEVEPTDLISAVKQKISEERGWD---PKLQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV ++ K
Sbjct: 58 SYKIEEKGFVVCVVNK 73
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 284 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 343
R V NP +LQPM+Q++ + NP+L + ++++ L+L+ G +
Sbjct: 291 FRNTVMQNPALLQPMIQQIAQSNPNLAQYLEQNPEALLQLLGAIGGEGGLEEGEGGEGGI 350
Query: 344 PQAVTV---TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396
P TV TPEER AIERLEA+GF R V+E +FAC+KNEE+AANYL ++ E E
Sbjct: 351 PPGATVLQVTPEERAAIERLEALGFPRQQVVEAYFACDKNEEMAANYLFENGFEDE 406
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M++ +K L+G F+I +V+ ED V+ +K+ I G +P Q LI+ GK+L+D +
Sbjct: 1 MELTIKNLQGKVFKISDVEEEDTVASLKQKIA---GQFQHPVELQKLIYSGKILQDDAQI 57
Query: 60 EENKVAENSFVVVMLT 75
+ + + F+V+M++
Sbjct: 58 KSYNIKQTDFIVLMVS 73
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 9/106 (8%)
Query: 294 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--VTVTP 351
+L+P+LQ+LG NP L +LI ++ FL L++E GG+ + A P A ++VT
Sbjct: 290 MLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSE--SGGDDD-----APLPPGAHQISVTE 342
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
EER+AIERL +GF + ++ +FAC+KNEELAAN+L D + ED
Sbjct: 343 EERDAIERLTRLGFTQDQAIQAYFACDKNEELAANFLFDQPDDDED 388
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEQRGWD---PKLQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E FVV ++ K
Sbjct: 58 TYKIEEKGFVVCVVNK 73
>gi|125775113|ref|XP_001358808.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
gi|54638549|gb|EAL27951.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
Length = 313
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 42/227 (18%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E VQ+++ MG ++ V AL A++N+PE A+EYL + IP + A
Sbjct: 127 EEMVQRLMGMG---YEEMPVRAALSASFNHPELAIEYLIAQIPSEAA------------- 170
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 287
SG A+P+ + P + M N L L + +F LR M
Sbjct: 171 ------------------SG-TASPVCVSP-SVAEMAVN-----LAPLMSDPRFAQLREM 205
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 347
+ NP L+ +L ++ NP + ++ H +F+ L+N + + + Q A + Q
Sbjct: 206 ILQNPDQLEAILGQMSGSNPEVFEGLRNHHGEFVDLLNYDLSLSDDDEFPQQADSA-QQT 264
Query: 348 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
+T E A++RL A+GF L ++V+ ACNKNEELAA+ L E
Sbjct: 265 PLTAAEAAAVDRLTALGFQHDLAVQVYLACNKNEELAADVLFRQSEE 311
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 275 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-------EP 327
LRN+ F LR V +P+ L P+LQ+LG+ NP L+++I +HQ FL ++ +
Sbjct: 244 LRNNPAFGMLRAAVAQDPRALVPLLQQLGRTNPELVQVINQHQQAFLAMLTEAGDDDEDD 303
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
G V ++P++ AI RL A+GFDR LE + AC++NEE+AAN+
Sbjct: 304 AMAALLGGAGGGGEGGGMVVELSPDDEAAIGRLAALGFDRNACLEAYLACDRNEEMAANF 363
Query: 388 LLDHMHE 394
L ++M +
Sbjct: 364 LAENMFD 370
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q A + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFNVEAEDSMTIGALKDKVQETQPDCTREAMK--LVYKGKVLDDATTVG 58
Query: 61 ENKVAENSFVVVML 74
+N+V E F+VV +
Sbjct: 59 DNQVTEQGFIVVFI 72
>gi|440791110|gb|ELR12364.1| UBA/TSN domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 305
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 55/227 (24%)
Query: 179 GGSWDRETVIRALRAAYNNPERAVEYLYSGI----PEQTAVPPVAR--ASAGGQAGNPPA 232
G +++E ++RALR A N+ + A + L SG P+Q A ++ G Q +P A
Sbjct: 119 GMGFEQEQIVRALRLARNDLQNACDLLLSGAQRTDPQQEASNLMSDLIQRMGQQNSDPQA 178
Query: 233 QTQ--AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
Q + QQP QFQ +R+++Q
Sbjct: 179 QFEWVVQQP----------------------------------------QFQRIRSLLQT 198
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN------VLGQLASAMP 344
P + +L +LG NP L LI ++Q +FL +N+ EGG+G+ V
Sbjct: 199 RPDLFAALLTQLGGSNPQLHELISQNQAEFLEWLNDE-EGGDGDGSDIAVVQTGGGGGGG 257
Query: 345 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
A ++ + +I RL +GF R +V + + AC KNEE+AANYL ++
Sbjct: 258 AAAQLSQRDESSITRLMELGFGRDVVRQAYLACGKNEEMAANYLFEN 304
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 339
Q A+R MVQ NP ++QP+LQ++ ++P L +LI ++ L+ G+ +
Sbjct: 280 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 339
Query: 340 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
M V +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 340 GPVM--RVNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 392
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 20 EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
++KV+D+KK I+ Q +P Q LI+ GK+L D +++E K+ E F+VVM+++
Sbjct: 10 QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMVSR 63
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 339
Q A+R MVQ NP ++QP+LQ++ ++P L +LI ++ L+ G+ +
Sbjct: 276 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 335
Query: 340 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
M V +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 336 GPVM--RVNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 388
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 20 EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
++KV+D+KK I+ Q +P Q LI+ GK+L D +++E K+ E F+VVM+++
Sbjct: 10 QNKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMVSR 63
>gi|281207509|gb|EFA81692.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 124
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 19/136 (13%)
Query: 263 MGSNAGAG---TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 319
M G G + LRN+ F LR +Q NP ++ +LQ+ + NP L+R I E+ +
Sbjct: 1 MAEAEGTGEPNIFEALRNNPHFPMLRETIQRNPAVIPELLQQFSQTNPGLVRQITENPQE 60
Query: 320 FLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACN 378
FLRL EP + A+ V+ EEREAIERL + G ++A V+E +FAC+
Sbjct: 61 FLRLFQEPQQV---------------AIQVSQEEREAIERLILLTGLEKAEVVEAYFACD 105
Query: 379 KNEELAANYLLDHMHE 394
K+E+L A+YL + +
Sbjct: 106 KDEQLTASYLFERADD 121
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 31/156 (19%)
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
S AG L FLR++ QF+ +R +VQ+NP +L LQE+ + NP L ++I E+Q F++++
Sbjct: 185 STAGEDPLHFLRSTPQFETMRRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQML 244
Query: 325 NEP------------VEGGEGN-------VLGQLASAMPQA----VTVTPEEREAIERLE 361
N+P +G PQ + VTPEE++AIER
Sbjct: 245 NDPNLETSGGSSAGGQSQPQGTPGSASGVAGSGGGGGGPQMGEGYIQVTPEEKQAIER-- 302
Query: 362 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
F L E +FAC KNE+LAAN+LL +F+D
Sbjct: 303 --SF--RLPREAYFACEKNEDLAANFLL--QGDFDD 332
>gi|195144934|ref|XP_002013451.1| GL23402 [Drosophila persimilis]
gi|194102394|gb|EDW24437.1| GL23402 [Drosophila persimilis]
Length = 314
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 45/229 (19%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E VQ+++ MG ++ V AL A++N+PE A+EYL + IP + A
Sbjct: 127 EEMVQRLMGMG---YEEMPVRAALSASFNHPELAIEYLIAQIPSEAA------------- 170
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 287
SG A+P+ + P + M N L L + +F +R M
Sbjct: 171 ------------------SG-TASPVSVSP-SVAEMAVN-----LAPLMSDPRFAQVREM 205
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE--PVEGGEGNVLGQLASAMPQ 345
+ NP L+ +L ++ NP + ++ H +F+ L+N V + Q SA Q
Sbjct: 206 ILQNPDQLEAILGQMSGSNPEVFEALRNHHGEFVDLLNYDLSVLSDDDEFPQQADSA--Q 263
Query: 346 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
+T E A++RL A+GF L ++V+ ACNKNEELAA+ L E
Sbjct: 264 QTPLTAAEAAAVDRLTALGFQHDLAVQVYLACNKNEELAADVLFRQSEE 312
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
+L+FLR++ FQ LR +VQ P +L+P+LQ++ NP + +I ++ FL+L+ E
Sbjct: 259 SLEFLRSNPHFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQFLQLLGE---- 314
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
E QA++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D
Sbjct: 315 -ELEDEEGALPPGAQAISVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFD 373
Query: 391 HMHEFE 396
E E
Sbjct: 374 QPDEDE 379
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+V+P + V +VK I +G Y A + +I+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YEAERMKVIYSGKILQDDKTVE 58
Query: 61 ENKVAENSFVVVMLTK 76
+ E F+V + +K
Sbjct: 59 SYNIQEKDFLVCLPSK 74
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 45/228 (19%)
Query: 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 223
S E V+ I MG +++ +I+AL+AA+NN ERA+EYL +G
Sbjct: 126 NSEFEQKVKDIEAMG---FEKSKIIQALQAAFNNQERAIEYLLNG-----------NIPI 171
Query: 224 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 283
Q P +QP P L L + QFQ
Sbjct: 172 LQQQQQQPNLQNQEQPLDPV------------------------NLEELQALAQNPQFQQ 207
Query: 284 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 343
+ +++ NPQ++ P+LQEL + NP L +L+Q + FL I Q +
Sbjct: 208 IVQVIRQNPQLILPILQELSQTNPQLAQLLQSNPQAFLSYI-------LQQEDQQDDNDE 260
Query: 344 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
A+ + +E +E + +GFD+ LE + AC+K +ELA NYL D
Sbjct: 261 SNAIQLNNQESNDVEEIIMLGFDKNDALEAYIACDKQKELAINYLFDQ 308
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK-DVTT 58
MK+ +KTLKG FEI + E +S +K I +G + L+H+GK L D
Sbjct: 1 MKLTIKTLKGNDFFEINFQNETTISQIKDTICQKKGEQCKENIK--LVHKGKQLNDDQKN 58
Query: 59 LEENKVAENSFVVVML 74
+E + EN F+++M+
Sbjct: 59 CQELGIKENDFLIMMV 74
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 97/230 (42%), Gaps = 40/230 (17%)
Query: 184 RETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA 243
R+ I ALRAA+NNP+RA EYL SG+ Q G G+ + +
Sbjct: 147 RDQCILALRAAFNNPDRAFEYLLSGVNLQALASQPGGQEGAGAGGDDMGDDYGDEEGSSD 206
Query: 244 PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELG 303
P G NP Q PN F +R + +PQ Q + +L
Sbjct: 207 PFGGA-GNPFAALAQN-PN------------------FALIRQRILQDPQFYQQFMSQLQ 246
Query: 304 KQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ----------------AV 347
+ P L LIQ++ F+ LI G+ N + ++
Sbjct: 247 QTQPQLFALIQQNPAAFMNLI----LAGDPNAGLAGMAGAGAGAGHAHGGAGGANPPGSI 302
Query: 348 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
VT +E EAI RL ++GF + E +FAC+KNEELAANYL + E E+
Sbjct: 303 RVTQDEMEAINRLTSLGFPKHKAAEAYFACDKNEELAANYLFETGFEDEE 352
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ +KTL+G IEV+ D + VK E +Q A LI GKV++D +L
Sbjct: 1 MKIIIKTLQGKQLPIEVEESDTIRQVK---EKIQAEHQMQADLMKLIAYGKVMEDDNKSL 57
Query: 60 EENKVAENSFVVVMLTKV 77
++ ++ E F+VVM++K
Sbjct: 58 KDYQIKEGDFLVVMISKA 75
>gi|299117286|emb|CBN75246.1| rad23b protein [Ectocarpus siliculosus]
Length = 341
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 111/269 (41%), Gaps = 55/269 (20%)
Query: 169 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 228
A V+ + MG + + ALRAA+N+ RA YL GIP+ V S G A
Sbjct: 80 ANVEMLTAMG---FPEDQATAALRAAFNDVSRAASYLMEGIPDN-----VGAGSGGSDAR 131
Query: 229 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTM 287
A A A + MG AG G L+F+R QF LR +
Sbjct: 132 GGGDAALAAAMMAGAEDEDGDEGGGGAAGLAQALMGMEAGEGNPLNFMRFHPQFDELRGL 191
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA------- 340
V+ NP +L +LQ L Q+P L+ I +H DFLRL+NEP + EG + ++
Sbjct: 192 VRENPAMLPQVLQGLATQSPELIERINQHPDDFLRLMNEPPD-AEGQAIMEMGVEGLLEG 250
Query: 341 ----------------------------------SAMPQAVTV--TPEEREAIERLEAM- 363
Q VTV T EE ++ L AM
Sbjct: 251 MDQEDDEEEEGGDAEAVAAGGGGGSPGVGVAGGDGGQGQIVTVELTEEEDAVVQNLMAMV 310
Query: 364 -GFDRALVLEVFFACNKNEELAANYLLDH 391
G R V+E F AC+KN E+AAN L ++
Sbjct: 311 PGAGRDQVIEAFIACDKNAEMAANLLFEN 339
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTLKG F I+V E +SDVK I V+G D P + Q+LI GK LKD +L V
Sbjct: 7 VKTLKGEVFRIDVAEESVMSDVKTKISEVRGHD--PGT-QVLICGGKTLKDGDSL-AGSV 62
Query: 65 AENSFVVVML 74
A F+V+M+
Sbjct: 63 AAGGFLVLMV 72
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 9/125 (7%)
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL--------INEPV 328
+ QQ Q LR +Q+NP+++QP+L++L NP + LIQ+ F+R + +
Sbjct: 211 DDQQMQLLRAALQSNPELIQPLLEQLAASNPQIASLIQQDPEAFIRTFLGAGGEDLGFEI 270
Query: 329 EGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
EG E G G+ + ++ +++ AI RL +GF+R LV++V+ AC+KNEE+AA+
Sbjct: 271 EGDESGFTGGEAGEEGTVRIQLSEQDQSAINRLCELGFERDLVIQVYLACDKNEEVAADI 330
Query: 388 LLDHM 392
L M
Sbjct: 331 LFRDM 335
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 96/204 (47%), Gaps = 27/204 (13%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
A S L G LE T+ ++ MG + R A+RAA+NNP+RAVEYL +G+P
Sbjct: 163 AESALFTGPQLEETLTHLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP------ 213
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
P A GG + A+TQ P + D P L LR
Sbjct: 214 PEVSAMLGGDS----AETQEAHGDVPPEEGDAEGDEDDENP--------------LGALR 255
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
+ F +R MVQANP +L +LQ +G NP L+ LI ++Q FL ++ GE
Sbjct: 256 HHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAA 315
Query: 337 GQLASAMPQAVTVTPEEREAIERL 360
G A P + +T EE EA++R+
Sbjct: 316 GTGGFAAPGIIQMTAEEMEALQRV 339
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKVI 78
+ + + EN +VVM+TK +
Sbjct: 59 DCSALKENDRLVVMVTKAV 77
>gi|194909981|ref|XP_001982049.1| GG11252 [Drosophila erecta]
gi|190656687|gb|EDV53919.1| GG11252 [Drosophila erecta]
Length = 297
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 50/228 (21%)
Query: 172 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 231
Q + D+ + + V ALRA++N+PERA+EYL +GIP++ + P
Sbjct: 111 QWVCDLMSMGYGEQEVRSALRASFNHPERAIEYLINGIPQEAS----------------P 154
Query: 232 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 291
A+ P S L L + +R M++ N
Sbjct: 155 EHELAEIP-------------------------SGQSTEQLQHLMGDPRLTQVREMIREN 189
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA----- 346
P+++Q +L+ L +P + Q + ++ G G+V + P
Sbjct: 190 PELMQLILERLADTDPAAFEDVHRDQEGLMTMLA----GVAGSVGDANHNHNPDEGELLQ 245
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
V +T EE A+ERLEA+GF+R + ++ + AC+K+E+LAA L+ E
Sbjct: 246 VALTAEEAAAVERLEALGFERVMAVQAYLACDKDEQLAAEVLIRQSEE 293
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 88/173 (50%), Gaps = 45/173 (26%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
G+P P Q+ AP + AG L+FL
Sbjct: 204 -----------GSPEPEHGSVQESQAPE------------------QPATEAGENPLEFL 234
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLM------RLIQEHQTDFLR 322
R+ QFQ +R ++Q NP +L +LQ+LG++NP L+ R +++ + FLR
Sbjct: 235 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQVRPRVRELRQPPSQFLR 287
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIK 62
Query: 61 ENKVAENSFVVVMLTKV 77
E + E +FVVVM+TK
Sbjct: 63 EYHIDEKNFVVVMVTKA 79
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 9/130 (6%)
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G ++ LRN+ Q A+R + NPQ Q ++Q+L +QNP + ++I D L + P
Sbjct: 257 GGLNIETLRNNPQIAAIRQAMAQNPQAAQALIQQLAQQNPQIAQIIGS-DPDLLTNLFLP 315
Query: 328 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 387
GEG++ V +TPEE AIERL+ +GF R +V++ +FAC+KNEELAANY
Sbjct: 316 ---GEGDI-----PPGATVVNITPEENAAIERLQGLGFPREVVIQAYFACDKNEELAANY 367
Query: 388 LLDHMHEFED 397
L +H + +D
Sbjct: 368 LFEHGFDDDD 377
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ VKT + +EV+ D + VK+ I G +P + Q +I+ GK+L D T+E
Sbjct: 2 VKITVKTTQQKVHHVEVELTDTIGTVKQKISDEHG---HPVAAQKIIYSGKILPDDKTIE 58
Query: 61 ENKVAENSFVVVMLTK 76
+ E F V+M++K
Sbjct: 59 SCALKEKDFFVLMVSK 74
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 17/101 (16%)
Query: 294 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP-----QAVT 348
+L+P+LQ LG NP L +LI + FL+L+ E V+ +P QA+
Sbjct: 255 MLEPILQ-LGAGNPQLAQLIANNPDQFLQLLGEEVD-----------DDVPLPPGAQAIA 302
Query: 349 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 303 VTEEERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLF 343
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWD--PKDQK-LIYSGKILKDDDTVE 57
Query: 61 ENKVAENSFVVVMLT 75
K+ E FVV M+
Sbjct: 58 SYKIEEKGFVVCMVN 72
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 79/132 (59%), Gaps = 11/132 (8%)
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
+ A L FLR++ F+ +R +++ +P +L +++ + NP L+ +I E+Q +FL LIN
Sbjct: 254 SGDANPLAFLRDNPVFEDMRRILRDDPSMLPYLMRRMQASNPDLLNIIAEYQDEFLALIN 313
Query: 326 EPVEGGEGNVLGQ--------LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
E G G GQ +A+AM ++TP + +AIERL+A+G+ LV++ + AC
Sbjct: 314 EGSNAG-GQPAGQPMSRELESIAAAM--VNSLTPSDMDAIERLKALGYPEHLVIQAYIAC 370
Query: 378 NKNEELAANYLL 389
++E AA +L+
Sbjct: 371 ERDEYDAAMFLV 382
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ + G YP +Q LI+ GK+++D L
Sbjct: 1 MKITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLL 59
Query: 60 EENKVAENSFVVVMLTK 76
+ K+ + F+VVM K
Sbjct: 60 SQYKLDDKKFIVVMSKK 76
>gi|297811745|ref|XP_002873756.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
gi|297319593|gb|EFH50015.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
Length = 134
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIEVKP D KNIETV G+ YPA+QQ+LIH+GK L+D T+E
Sbjct: 1 MKIIVKTLKGTRFEIEVKPNDS-----KNIETVLGASEYPAAQQILIHKGKKLRDEATME 55
Query: 61 E 61
E
Sbjct: 56 E 56
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G + +P + Q LI+ GK+L +
Sbjct: 1 MQITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILN-----D 55
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQ-VLRLLPRHNQRLHLRLLHQL 119
+ A + LT Q P L + P + P+ ++
Sbjct: 56 DTATAAPAPASPPLTYTPIARQNAPVLPTVPAPAVPTSEPTTTTAPKEEEKTDSPPETMS 115
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
S+ S ++ A S LV G + E V +I+ MG
Sbjct: 116 PSSTECSVP-----------------SDSSRPSLFVDATSALVTGQSYENMVTEIMSMG- 157
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
++RE VI ALRA++NNP+RAVEYL GIP GQA P QT A P
Sbjct: 158 --YEREQVIAALRASFNNPDRAVEYLLVGIP----------GDREGQAVADPPQTLASTP 205
Query: 240 AAP 242
P
Sbjct: 206 TQP 208
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 237 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQNFDD 285
>gi|290999563|ref|XP_002682349.1| rad23 protein [Naegleria gruberi]
gi|284095976|gb|EFC49605.1| rad23 protein [Naegleria gruberi]
Length = 385
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 108/255 (42%), Gaps = 58/255 (22%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
+ TVQQ L+MG +DR + ++A++ + A E+L SGIPE +
Sbjct: 153 DETVQQFLEMG---YDRNDIDECMKASFYDRATAAEFLISGIPENV------KQMMQENG 203
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 287
GN P P G A+ L G+ G D S Q LR
Sbjct: 204 GNLPT----------PPQGGSLASAL---------AGNQQGFSLRDLFTLSPQLNNLRNA 244
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE--------------------- 326
++ NP +L+ L + + +P L ++IQ + +FL +INE
Sbjct: 245 IRQNPTLLREFLTHVSQVSPELYQIIQSNPREFLEIINETGPVTGTTGTQPQTTPTTTTG 304
Query: 327 ---PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 383
P G E L Q A P + ++ ++ I L +GF + ++ + AC+KN+E+
Sbjct: 305 GEHPPSGEE---LQQ--QAPPGTIFISQDDERKINELVGLGFTKNEAIQAYLACDKNQEM 359
Query: 384 AANYLLDHMHE-FED 397
AAN L ++ FED
Sbjct: 360 AANLLFENRDRGFED 374
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 83/156 (53%), Gaps = 37/156 (23%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPA------------------------TEAGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 312
+ QFQ +R ++Q NP +L +LQ+LG++NP L+++
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQV 271
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKV 77
++ E +FVVVM+TK
Sbjct: 65 RIDEKNFVVVMVTKT 79
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 15/128 (11%)
Query: 280 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL--------INEPVEGG 331
Q Q LR +Q+NP+++QP+L++L NP + +I E F+R + +EG
Sbjct: 232 QMQLLRAALQSNPELIQPLLEQLSASNPQIANMISEDPEGFIRTFLGAGGEDLGFDIEGE 291
Query: 332 EGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384
+ ++LG A + ++ ++ AI RL +GFDR LV++V+ AC+KNEE+A
Sbjct: 292 DADMLGGADGDGEGADAPGTVRIPISEQDENAINRLCELGFDRNLVIQVYLACDKNEEVA 351
Query: 385 ANYLLDHM 392
A+ L M
Sbjct: 352 ADILFRDM 359
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
S GS EAT+ I++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 61 STFALGSEREATILNIMEMG---YDRPQVEAALRAAFNNPHRAVEYLITGIPE 110
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 37/144 (25%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA + AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPA------------------------TEAGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQ 300
+ QFQ +R ++Q NP +L +L+
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLR 259
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 76.3 bits (186), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 236
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ A A A QA PA QA
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQ------AEAPAAVQALPVPAAVQA 54
>gi|195445192|ref|XP_002070215.1| GK11154 [Drosophila willistoni]
gi|194166300|gb|EDW81201.1| GK11154 [Drosophila willistoni]
Length = 284
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 65/230 (28%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E V++++ MG ++ E V ALRA++N+PERA+EYL +G+
Sbjct: 113 EDRVRELVSMG---YEEEEVRAALRASFNHPERAIEYLINGL------------------ 151
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF--LRNSQQFQALR 285
PP+Q + S++ + D+ L + +F R
Sbjct: 152 --PPSQPLPTP-----------------------STTSSSSLSSPDWAELLSDPRFIQFR 186
Query: 286 TMVQANPQILQPMLQELGKQNPHLMRLIQEH-QTDFLRLINEPVEGGEGNVLGQLASAMP 344
++ +P+ L+ +L+ +G+ +P + I+ Q F +GG ++
Sbjct: 187 DAIRDHPEALEGLLRRIGESDPETLEAIRNGIQNGFED------DGGSESI--------- 231
Query: 345 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
V++TPEE A+ERL ++GF R +VL+V+ AC+KNEELAA+ L E
Sbjct: 232 -QVSLTPEELAAVERLISLGFQREMVLQVYLACDKNEELAADILFRESEE 280
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 75.9 bits (185), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 236
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ A A A QA PA QA
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQ------AEAPAAVQALPIPAAVQA 54
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 9/91 (9%)
Query: 308 HLMRLIQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVTVTPEEREAIE 358
+L+ I +HQ F++++NEPV+ G + + S + VTP+E+EAIE
Sbjct: 205 YLLMQISQHQEHFIQMLNEPVQEAGGQGGGGGSGSGGIAEAGSGHMNYIQVTPQEKEAIE 264
Query: 359 RLEAMGFDRALVLEVFFACNKNEELAANYLL 389
RL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 265 RLKALGFPEGLVIQAYFACEKNENLAANFLL 295
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 205
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 155 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYL 206
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 3 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 57
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 282 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 341
Q LR +V NP +LQ ++Q+L + NP L + + L+++ G EG LG
Sbjct: 285 QQLRELVAQNPALLQGLIQQLAENNPELANQLANNPEMLLQVL--AAAGAEG--LGDDDE 340
Query: 342 A-MP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+P Q V +T EE ++++RLE +GF R VLE + AC+KNEELAANYL ++
Sbjct: 341 GPLPPGAQVVQLTQEEMQSVQRLEQLGFSRQAVLEAYLACDKNEELAANYLFEN 394
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ VKTL+ F IE + + V D+KK I+ QG D A+ Q LI GKVL D +E
Sbjct: 2 VKLTVKTLQQKVFTIEAEGTETVGDLKKKIQAEQGHD---AATQKLIFSGKVLPDEKVVE 58
Query: 61 ENKVAENSFVVVMLTK 76
+ + F+V+M+ K
Sbjct: 59 TLNIKDKDFLVLMVAK 74
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like, partial
[Oryctolagus cuniculus]
Length = 365
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A
Sbjct: 195 QAARALLTRPASEQMVAEIVSMG---YEREHVLAALRASFNNPHRAVEYLLMGLPGDRAS 251
Query: 216 -----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
PP A +S G ++ A A A TSG +PLD+
Sbjct: 252 AAEVEPPQAGSSGAG-------RSSAVVADAGATTSGSGGHPLDV--------------- 289
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L N+ +FQ LR ++Q P +L +LQ + Q+P L R +++Q + ++ P+
Sbjct: 290 ----LWNAPEFQLLRQILQYFPSLLPGVLQRICPQDPLLRRQFRQYQDYLVHMLTAPM 343
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTK 76
++ +
Sbjct: 73 LVAR 76
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 283 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV------------EG 330
ALR +V NP+ L P+L+ L + P L I + F+ ++ E V EG
Sbjct: 245 ALRQVVSGNPEALAPLLESLSNRFPQLREQIVANPEVFVSMLLEAVGENLEDAMTGMDEG 304
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
EG + V V+ + +AI RL +GF+RALV++V+FAC KNEE+AAN L
Sbjct: 305 TEGGAVAAGQQGEEVNVEVSESDEQAIARLCELGFERALVMQVYFACGKNEEIAANMLF- 363
Query: 391 HMHEFED 397
+EF D
Sbjct: 364 --NEFGD 368
>gi|397637202|gb|EJK72575.1| hypothetical protein THAOC_05883 [Thalassiosira oceanica]
Length = 504
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 58/172 (33%)
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE------ 329
RN QF +LR +VQ+NP LQ +L ++G+Q P L++ I +Q +FL ++NEPV
Sbjct: 307 RNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPVAEAPAGG 366
Query: 330 ----------------------------GGEGNVLGQLASAMP----------------- 344
G G+ G +A+
Sbjct: 367 GADAGGADAGHDGADDGRRRRAAPGHRAGHRGHAAGATRTALTDGRRGHGAGGMPPGMMG 426
Query: 345 -------QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
Q + ++ EE A+ RL MGFDR + + AC+KNE LAAN L+
Sbjct: 427 GGGEGGPQVLRLSEEEMAAVNRLTEMGFDRTEAAQAYLACDKNEALAANLLM 478
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 44/120 (36%), Gaps = 50/120 (41%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNI-----------ETVQGS----------------- 36
VKTLKG F IEV P + V++VK I E V G+
Sbjct: 6 VKTLKGGKFTIEVDPSNSVAEVKAVIRGGGDHAHDPEEVVAGNFLNSSWRSSNSKIQTGL 65
Query: 37 ----------------------DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74
PA+ LIH GKVLKD +E + N F+VVM+
Sbjct: 66 NSEMRLAPTRSHALLFRQENTKSELPAAGMKLIHSGKVLKDDEKIESCNIKPNDFLVVMI 125
>gi|158430391|pdb|2QSF|X Chain X, Crystal Structure Of The Rad4-Rad23 Complex
gi|158430393|pdb|2QSG|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Uv-Damaged Dna
gi|158430397|pdb|2QSH|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
Length = 171
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 24/133 (18%)
Query: 283 ALRTMVQANPQILQPMLQELGKQNPHL---------------MRLIQEHQTDFLRLINEP 327
+LR +V NP+ L P+L+ + + P L + + ++ D + ++
Sbjct: 37 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 96
Query: 328 VEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 379
VEG + V G+ A+A + Q V TPE+ +AI RL +GF+R LV++V+FAC+K
Sbjct: 97 VEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDK 156
Query: 380 NEELAANYLL-DH 391
NEE AAN L DH
Sbjct: 157 NEEAAANILFSDH 169
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77
++ DVK NIE +Q D YP QQ+LIH GKVLKD TTL +N+V+E+ F+VVML+KV
Sbjct: 76 EIMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKV 131
>gi|380476277|emb|CCF44800.1| hypothetical protein CH063_14080, partial [Colletotrichum
higginsianum]
Length = 94
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 301 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAI 357
+LG NP L +LI + FL+L+ E V+ +P QA+ VT EER+AI
Sbjct: 1 QLGAGNPQLAQLIANNPDQFLQLLGEEVDDD---------VPLPPGAQAIQVTEEERDAI 51
Query: 358 ERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
ERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 52 ERLCRLGFDRDAAIQAYFACDKNEELAANFLF 83
>gi|348690401|gb|EGZ30215.1| hypothetical protein PHYSODRAFT_553293 [Phytophthora sojae]
Length = 450
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F ++ + D VS VK+ IE +Q +P +QQ LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIEGLQN---FPVAQQKLIHAGKVLKDDSTLA 57
Query: 61 ENKVAENSFVVVMLT 75
E V EN F+VVM+T
Sbjct: 58 EYNVKENDFLVVMVT 72
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
+L+ LRN QF ALR +VQ+NP L +LQ++G Q+P L+RLI ++Q F++++NEP+
Sbjct: 227 SLEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPI 284
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
+ +T EE A++RL MGF+R V++ + AC+KNE LAAN+L+
Sbjct: 387 IMLTEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLM 429
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 73.6 bits (179), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 64 EYKIDEKNFVVVMVTK 79
>gi|167375270|ref|XP_001739824.1| UV excision repair protein rad23 [Entamoeba dispar SAW760]
gi|165896371|gb|EDR23800.1| UV excision repair protein rad23, putative [Entamoeba dispar
SAW760]
Length = 315
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 60/232 (25%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-----IPEQTAVPPVARAS 222
E + +++MG + R+ I+ALR + NN A ++L SG IP+Q
Sbjct: 132 EENINHLVEMG---FLRDDAIKALRKSQNNTAIAADFLISGVDLDNIPDQ---------P 179
Query: 223 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 282
AGG P + PN+ L+ + +QF
Sbjct: 180 AGGYEEEDPQE--------------PNS--------------------ILNLTK--EQFI 203
Query: 283 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI----NEPVEGGEGNVLGQ 338
L + PQI++P LQ + +NP L +L++ + +I N E + Q
Sbjct: 204 EL---CREQPQIIEPFLQHIESENPQLAQLMRNNPGMVYDIIKGQTNNNRVPSESQPIPQ 260
Query: 339 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
+ P ++PE+ AI+RL A+GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 261 QPNHAPSQPQLSPEDNAAIDRLCALGFGRSQCLQAYIACDKNEQLAANFLLD 312
>gi|349604998|gb|AEQ00385.1| UV excision repair protein RAD23-like protein B-like protein,
partial [Equus caballus]
Length = 94
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 9/86 (10%)
Query: 313 IQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVTVTPEEREAIERLEAM 363
I +HQ F++++NEPV+ G + + S + VTP+E+EAIERL+A+
Sbjct: 2 ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKAL 61
Query: 364 GFDRALVLEVFFACNKNEELAANYLL 389
GF LV++ +FAC KNE LAAN+LL
Sbjct: 62 GFPEGLVIQAYFACEKNENLAANFLL 87
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 82/185 (44%), Gaps = 34/185 (18%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIRFHQVGP 85
+K+ IE +G D YPA Q LI+ GK+L D T L E K+ E F+VVM+TK ++ P
Sbjct: 4 LKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTK----PKLPP 58
Query: 86 QLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLWHRHNLSLNLLLLLLLLLLLLLLLLL 145
P P + + S N+ LL+
Sbjct: 59 ATHAGSSDSTP-------TPGTGDGGEKQTSDTTSNEPPASENVNSGASFGQAESALLM- 110
Query: 146 QLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 205
D Y Q+ N I+DMG + +E V RALRA++NNP+RAVEYL
Sbjct: 111 -----GDEYNQSLRN-------------IMDMG---YPKEQVERALRASFNNPDRAVEYL 149
Query: 206 YSGIP 210
+GIP
Sbjct: 150 LNGIP 154
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 46/180 (25%)
Query: 150 VSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 209
DV +A +NL + EA V+ L RAA+ NP+ AVE+L +GI
Sbjct: 122 ADDVSAEAVANLTSMGFPEAEVKHCL----------------RAAHGNPDIAVEFLTNGI 165
Query: 210 PEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 269
PE VA A+A A N A T + + SG PL
Sbjct: 166 PEG-----VAEAAA---AMNTSAVTSPSASSESSSGSG---QPLQA-------------- 200
Query: 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
LRN QF LR +VQ+NPQ+LQ +L ++G+Q P L++ I +Q FL+++NEPVE
Sbjct: 201 -----LRNHPQFNDLRRLVQSNPQMLQQVLTQIGQQQPQLLQEINANQALFLQIMNEPVE 255
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI + V+DVK IE + A LIH GKVLKD ++
Sbjct: 1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSE--LSAGTLKLIHSGKVLKDEDSIA 58
Query: 61 ENKVAENSFVVVMLTKVIR 79
+ EN F+VVM+TK +
Sbjct: 59 SAGIKENDFLVVMVTKAKK 77
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 345 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
Q + +T EE A++RL MGFDR+ + F AC+KNE LAAN L+D M
Sbjct: 357 QVLRLTEEEMAAVDRLAEMGFDRSEAAQAFLACDKNEALAANLLMDSM 404
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryzias latipes]
Length = 421
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKV 77
+ K+ E +FVVVM++K
Sbjct: 61 DYKIDEKNFVVVMVSKA 77
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---QT 213
A+S LV G+ EA + +I+ MG ++RE V+ ALRA++NNP RAVEYL +GIP Q
Sbjct: 152 ASSALVTGAEYEAMLTEIMSMG---YERERVVAALRASFNNPHRAVEYLLTGIPSSPVQE 208
Query: 214 AVPPVARASAGG 225
+ PPV ++G
Sbjct: 209 SNPPVQPPTSGS 220
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 312
++G L FLR QF +R +Q NP +L +LQ+LG++NP L+++
Sbjct: 351 SSGENPLAFLRTQPQFLHMRQAIQQNPALLPTLLQQLGRENPQLLQV 397
>gi|67466741|ref|XP_649512.1| RAD23 protein [Entamoeba histolytica HM-1:IMSS]
gi|56465972|gb|EAL44126.1| RAD23 protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707323|gb|EMD47005.1| RAD23 protein, putative [Entamoeba histolytica KU27]
Length = 314
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 158/404 (39%), Gaps = 107/404 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-VSDVKKNIETVQGSDVYPASQQMLIHQGKVLK-DVTT 58
MK+ VKT++G E E++PE V ++K I QG D+ S LI++ ++LK +
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 59 LEENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQ 118
L + E +V+ V++ V P PKL + H+ + Q
Sbjct: 58 LGGLGINEGDSIVM----VVKKSAVPP----------PKLAPVTQPETHSTEPIQQPTTQ 103
Query: 119 LWHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMG 178
+ S + D++ V E + +++MG
Sbjct: 104 PITTNQPSTQPV---------------------DIFQSQQRQTVNVEPTEENINHLVEMG 142
Query: 179 GGSWDRETVIRALRAAYNNPERAVEYLYSG-----IPEQTAVPPVARASAGGQAGNPPAQ 233
+ R+ I+ALR + NN A ++L SG IP+Q PA
Sbjct: 143 ---FLRDDAIKALRKSQNNTAIAADFLISGVDLDNIPDQ------------------PAG 181
Query: 234 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 293
+ + P P G++ L Q + R PQ
Sbjct: 182 SYEEYPQEP---------------------------GSILNLTKDQFIELCREQ----PQ 210
Query: 294 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-------PVEGGEGNVLGQLASAMPQA 346
I++ +Q + +NP +LI+ + +I P E A + PQ
Sbjct: 211 IIESFIQHVESENPSAAQLIRNNPGMIYDIIKSQTNDNRVPSEPQHTQPQPNHAPSQPQ- 269
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
++PE+ AI+RL +GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 270 --LSPEDNAAIDRLCGLGFGRSQCLQAYIACDKNEQLAANFLLD 311
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 11/91 (12%)
Query: 149 SVSDVYGQAA------SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAV 202
+ +++ G++A S GS E T+Q I++MG ++R V ALRAA+NNP RAV
Sbjct: 120 AATNIEGESAPTETSESTFALGSERETTIQNIMEMG---YERPQVEAALRAAFNNPHRAV 176
Query: 203 EYLYSGIPEQTAVP--PVARASAGGQAGNPP 231
EYL SGIPE P PVA A+ G +G P
Sbjct: 177 EYLISGIPESLQRPSAPVASAATGSGSGAAP 207
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ D VS K+ + + D P SQ L++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQTIPIDVELNDSVSSAKEKL--AKEKDCTP-SQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKV 77
E K+ E + ++ M++K
Sbjct: 58 ECKLKEGASIIFMISKA 74
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 24/196 (12%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP Q N
Sbjct: 155 VDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL-----------QRMNE 201
Query: 231 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
PA P+ +S ++ D + S++ + L QF +R++VQA
Sbjct: 202 PA-------INPSASSERMSSLTDRLTSHMRQDDSDSA--LYNALMQIPQFGEIRSIVQA 252
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV- 349
NP+ L ++Q+L +P ++ LIQ+ FLR++ P + G P +V++
Sbjct: 253 NPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVPPDSVSIP 312
Query: 350 -TPEEREAIERLEAMG 364
EER AI+RL +G
Sbjct: 313 LREEERVAIQRLVELG 328
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 24/196 (12%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP Q N
Sbjct: 155 VDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL-----------QRMNE 201
Query: 231 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
PA P+ +S ++ D + S++ + L QF +R++VQA
Sbjct: 202 PA-------INPSASSERMSSLTDRLTSHMRQDDSDSA--LYNALMQIPQFGEIRSIVQA 252
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV- 349
NP+ L ++Q+L +P ++ LIQ+ FLR++ P + G P +V++
Sbjct: 253 NPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGVDVPPDSVSIP 312
Query: 350 -TPEEREAIERLEAMG 364
EER A++RL +G
Sbjct: 313 LREEERVAVQRLVELG 328
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 24/196 (12%)
Query: 171 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 230
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP Q N
Sbjct: 155 VDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL-----------QRMNE 201
Query: 231 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 290
PA P+ +S ++ D + S++ + L QF +R++VQA
Sbjct: 202 PA-------INPSASSERMSSLTDRLTSHMRQDDSDSA--LYNALMQIPQFGEIRSIVQA 252
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV- 349
NP+ L ++Q+L +P ++ LIQ+ FLR++ P + G P +V++
Sbjct: 253 NPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVPPDSVSIP 312
Query: 350 -TPEEREAIERLEAMG 364
EER AI+RL +G
Sbjct: 313 LREEERVAIQRLVELG 328
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 153 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206
YG+A SNL+AGS LE T+QQI D+G R+ VIRAL AAYNNPER VEYLY
Sbjct: 61 TYGKAESNLIAGSTLEPTIQQI-DIGR-KLVRDIVIRALSAAYNNPERTVEYLY 112
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 102/235 (43%), Gaps = 63/235 (26%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
SN+V GS + +Q ++ MG + E A++AA+NN RA+EYL +G+P P
Sbjct: 113 TTSNMVTGSEYDQAIQNLIQMGFAKSECEA---AMKAAFNNQNRAIEYLLNGLPVIDQPP 169
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
P QPA NAN +D Q +
Sbjct: 170 P--------------------QPAL-------NANQVD---QNI---------------- 183
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 336
Q LR NPQ + +Q+L + NP L + IQ++ ++L+ +G EG+ +
Sbjct: 184 ----LQLLREQFMQNPQAVLQSIQQLQQTNPQLYQQIQQNPETLIQLLMGAGQG-EGDEI 238
Query: 337 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391
+T EE + + +L MGF + LE F AC+KN E AA+YL +
Sbjct: 239 ---------ETEITQEEEQQLNQLMMMGFSKEDALEGFLACDKNVETAASYLFEK 284
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G FE+EV+P D V ++K+ IE V+ ++ +QQ L+ +G +L D T+
Sbjct: 1 MKIIIKTLSGQTFELEVQPTDSVLNIKEKIEKVKQFEI---AQQKLLRKGTLLVDDQTVG 57
Query: 61 ENKVAENSFVVVMLT 75
+ + E F+VVM+
Sbjct: 58 DLGIQEKDFLVVMVN 72
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ +F++EV+ KV +VK+ I +G Y + Q LIH GK+L D +T+E
Sbjct: 1 MKLTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG---YTVASQKLIHSGKILNDASTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
E K++E F+VVM++K
Sbjct: 58 ELKISEKDFIVVMVSK 73
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
G+ E V +++MG + R+ V A+R A+NNP+RA EYL +GIP+ A
Sbjct: 135 GAVYENAVSNLMEMG---FPRDQVTHAMRTAFNNPDRAAEYLMTGIPDSVA 182
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
AS GS EAT+Q I++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 132 ASTFAVGSEREATIQNIMEMG---YDRPQVENALRAAFNNPHRAVEYLITGIPE 182
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV+ D V K+ + + + ASQ L++ GKVL D TLE
Sbjct: 1 MQIIFKDFKKQTVPIEVELTDTVLSTKEKLGQAKSCE---ASQIKLVYSGKVLVDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQ 86
E K+ E ++ M++K PQ
Sbjct: 58 EYKIKEGVSIIFMISKAKSSQSSTPQ 83
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus
siliculosus]
Length = 466
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ VKT+KG F+IEV+ V +VK IE +PA+Q LIH G++LKD TL
Sbjct: 2 VKLTVKTIKGKKFQIEVEQTQTVREVKGVIEEQNAE--FPAAQLKLIHSGQILKDECTLA 59
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E F+V M+TK
Sbjct: 60 EYKIKEEEFLVCMVTK 75
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
TL+ R QF L+ +VQ +P L +LQ +G+Q+P+L+ I E+Q DF+ L+NEP+
Sbjct: 177 TLEDFRGHPQFNELKRLVQRDPTQLSSILQMIGRQSPNLLARIHENQGDFIALMNEPI 234
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392
+ ++ EE A+ RL +GF+R + + AC+KNE LAAN+LL+ M
Sbjct: 342 IRLSEEEGAAVARLTELGFERTDAAQAYLACDKNEALAANFLLNDM 387
>gi|342181674|emb|CCC91154.1| putative UV excision repair RAD23 protein, partial [Trypanosoma
congolense IL3000]
Length = 280
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 33/218 (15%)
Query: 157 AASNLVAGSNLEAT-------VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 209
AA+ GS++ AT + I MG DR+ + ALRAAY NP+RAVE+L++GI
Sbjct: 50 AAAAPRTGSSVAATQGVDPALIDSIAAMG--FEDRDQIALALRAAYMNPDRAVEFLFTGI 107
Query: 210 PEQTAVPPVARASAGGQAGNPPAQTQAQQPA-APAPTSGPNANPLDLFPQGLPNMGSNAG 268
P V R A Q P T A P SG + LF
Sbjct: 108 PSH-----VQRELAESQLRAVPGNTSVSGGVDATHPQSGRGGDTESLF------------ 150
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR-LINEP 327
+ L Q + +R++V++NPQ L ++Q+L ++ P + +L+Q+ +F+R ++ +
Sbjct: 151 ----NALMAVPQMEEIRSIVRSNPQALGTVIQQLQERFPQIAQLVQQDPEEFMRFMVGDA 206
Query: 328 VEGGEGNVLGQLASAMPQAV-TVTPEEREAIERLEAMG 364
V V A+ +A+ + EER A+ RL +G
Sbjct: 207 VTADTEAVSDGGAALASEAIPPLREEERAAVNRLVVLG 244
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
V G++L+ VQ +++MG ++RE +RALRA+YNNPERAVEYL++GIP
Sbjct: 153 FVTGADLQTAVQNMMEMG---FEREQAMRALRASYNNPERAVEYLFNGIP 199
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+++ +P + V+D+KK IE G +P + Q LI+ G+VL D T+E
Sbjct: 1 MKITVKTLQQKTFQLDAEPSETVADLKKKIEEGHG---HPVATQKLIYSGQVLGDDKTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V+M+
Sbjct: 58 SCNIKEKGFLVLMV 71
>gi|407416607|gb|EKF37719.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 300
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 190 ALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN 249
ALRAAY NP+RAVE+L +GIP Q N PA P+ +S
Sbjct: 111 ALRAAYMNPDRAVEFLCTGIPSDVM-----------QRMNEPA-------INPSASSERM 152
Query: 250 ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHL 309
++ D + ++ + + L QF +R++VQANP+ L ++Q+L +P +
Sbjct: 153 SSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEIRSIVQANPESLPTVVQQLRIHHPEV 210
Query: 310 MRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAM 363
+ LIQ+ FLR++ P G G+ + + ++P + EER AI+RL +
Sbjct: 211 IGLIQQDLEGFLRIMGNPGQTEFTTSAGGGDNVPHDSVSIP----LREEERVAIQRLVEL 266
Query: 364 G 364
G
Sbjct: 267 G 267
>gi|195609762|gb|ACG26711.1| hypothetical protein [Zea mays]
Length = 38
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 363 MGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 1 MGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 35
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 43/51 (84%), Gaps = 3/51 (5%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+LV G+ L+ +VQ +++MG ++RE V+RAL+A++NNP+RAVEYL++GIP
Sbjct: 128 DLVTGAALQTSVQNMIEMG---FEREQVLRALKASFNNPDRAVEYLFNGIP 175
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ +P D V+D+K I+ Q +P Q LI+ GKVL D T+E
Sbjct: 1 MKITVKTLQQKQFQIDAEPSDTVADLKSKIKDTQN---HPVEHQKLIYSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLT 75
++ E F+V+M++
Sbjct: 58 SCQIKEKDFLVLMVS 72
>gi|407042326|gb|EKE41271.1| RAD23 protein, putative [Entamoeba nuttalli P19]
Length = 317
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 57/230 (24%)
Query: 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 227
E + +++MG + R+ I+ALR + NN A ++L SG+ + + AGG
Sbjct: 135 EENINHLVEMG---FLRDNAIKALRKSQNNTAIAADFLISGV----DLDNIPDQPAGGYE 187
Query: 228 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 287
P Q+P G++ L Q + R
Sbjct: 188 EYP------QEP------------------------------GSILNLTKDQFIELCREQ 211
Query: 288 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI-----NEPVEGGEGNVLGQL--A 340
PQI++ +Q + +NP +LI+ + +I + V G Q A
Sbjct: 212 ----PQIIESFIQHVESENPSAAQLIRNNPGMIYDIIKSQTNDNRVPSGPQPTQPQPNHA 267
Query: 341 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
A PQ ++PE+ AI+RL +GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 268 PAQPQ---LSPEDNAAIDRLCGLGFGRSQCLQAYIACDKNEQLAANFLLD 314
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 52/76 (68%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ P+ V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTK 76
+ K+ E +FVVVM++K
Sbjct: 61 DYKIDEKNFVVVMVSK 76
>gi|402580657|gb|EJW74606.1| hypothetical protein WUBG_14486, partial [Wuchereria bancrofti]
Length = 80
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 346 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394
A+ VT ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 30 AIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 78
>gi|109126538|ref|XP_001116344.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Macaca
mulatta]
Length = 53
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 4 IQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 52
>gi|159162855|pdb|1PVE|A Chain A, Solution Structure Of Xpc Binding Domain Of Hhr23b
Length = 72
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 45/58 (77%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 329
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 6 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQ 63
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 10/78 (12%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
G + S L G+ LE+ +Q +++MG ++R+ V RA+RAA+NNP+RAVEYL +GIPE
Sbjct: 168 GTSGSFLTGGA-LESAMQSMVEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHLV 223
Query: 215 VPP------VARASAGGQ 226
PP AR S+ GQ
Sbjct: 224 NPPAAAAEAAARTSSEGQ 241
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K I+ QG + Q +I GK+L D T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQNEQG---HAPELQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVMLTK 76
+ K+ E F+VVM++K
Sbjct: 58 DCKIKEKDFLVVMVSK 73
>gi|93279429|pdb|2F4M|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
gi|93279431|pdb|2F4O|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
Length = 61
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 44/57 (77%)
Query: 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 4 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I++ PE+ V + + IE+ +G D +P + Q LI+ GK+L D T++E
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILND-DTVKEY 113
Query: 63 KVAENSFVVVMLTK 76
K+ E +FVV M+TK
Sbjct: 114 KIDEKNFVVFMVTK 127
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 61.6 bits (148), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67
Query: 63 KVAENSFVVVMLTK 76
++ E +FVVVM+TK
Sbjct: 68 RIDEKNFVVVMVTK 81
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 61.2 bits (147), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTK 76
++ E +FVVVM+TK
Sbjct: 65 RIDEKNFVVVMVTK 78
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%)
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
S AG L FLR++ QF+ +R +VQ+NP +L LQE+ + NP L ++I E+Q F++++
Sbjct: 256 STAGEDPLHFLRSTPQFETMRRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQML 315
Query: 325 NEP 327
N+P
Sbjct: 316 NDP 318
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE++ +KV +K+ I +G D Y A Q LI+ GK+L D +
Sbjct: 1 MIITLKTLQQQTFKIEIEESEKVLALKERIAQEKGGD-YAADNQKLIYAGKILDDKQCIS 59
Query: 61 ENKVAENSFVVVMLTKV 77
E K+ E++FVV+M+TK
Sbjct: 60 EYKIQESNFVVIMVTKA 76
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 155 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 214
G + + + G LE+ + +++MG + RE V RA+RAA+NNP+RAVEYL +GIPE A
Sbjct: 130 GGDSGSFLTGGPLESAMSSMMEMG---FQREQVQRAMRAAFNNPDRAVEYLMTGIPEHLA 186
Query: 215 VP 216
P
Sbjct: 187 NP 188
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 291 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 350
NP LQP++Q + + NP L + L L+ GG G + +P ++
Sbjct: 323 NPAALQPLVQAIAQSNPQLAEAMNHDPQGVLSLLAGGAAGGAGEEM-----ELPTLAELS 377
Query: 351 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
++R ++E++ AMG A +E +F C KN E+A Y ++ +FED
Sbjct: 378 EQDRTSVEQIVAMGIPEAKAIESYFMCGKNVEMAVQYYFENPQDFED 424
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K I+ QG +P Q +I GK+L D T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQKEQG---HPPELQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVMLT 75
+ + E F+VVM++
Sbjct: 58 DCNIKEKDFLVVMVS 72
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211
S GS E T+Q I++MG ++R V ALRAA+NNP RAVEYL SGIPE
Sbjct: 141 STFALGSERETTIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLISGIPE 190
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K K IEV+ D VS K + Q D +SQ L++ GKVL+D TLE
Sbjct: 1 MKIIFKDFKKQTIPIEVELTDTVSSAKDKL--AQEKDCV-SSQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKV 77
E K+ E + ++ M++K
Sbjct: 58 ECKLKEGASIIFMISKA 74
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 29/233 (12%)
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
G DR + ALRAA+ N +RAVEYL+ GIP V ++ G P +A P
Sbjct: 182 GFEDRNQIALALRAAFMNVDRAVEYLFDGIPPHL----VEELTSHGLPAAPAEAPRASNP 237
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
+A + T+ A P+ S A + D L QF +RT+ N L ++
Sbjct: 238 SASSATA---AVPVSTS-LASAATLSTAASEMRDALSRIPQFDEIRTLYNQNTDTLPVVM 293
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-LGQLASAMPQAVT---------- 348
Q++ ++P + I+ + FL ++ E + G N G +AS +AV
Sbjct: 294 QQIALRHPAVYEQIERNPEVFLSIMGEAGQPGTSNAPPGSVASPTAEAVVGDTEEGSFMN 353
Query: 349 -------VTPEEREAIERLEAMG---FDRALVLEVFFACNKNEELAANYLLDH 391
+T E+R A+++L +G +D + V+ A +N+E+AA+ L +H
Sbjct: 354 ELQAGVELTAEDRMAVQQLVELGGGMWDEQSAVLVYLATQRNQEVAASVLFEH 406
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK + D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLL-----VDEYEPASLRLCFNGAVLEDSKILA 55
Query: 61 ENKVAENSFVVV 72
+ V +N F+V+
Sbjct: 56 DAGVKDNDFLVL 67
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P +K+ VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSEKIGQVKEKISAEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTK 76
K+ E F+V M +K
Sbjct: 58 SYKIEEKGFIVCMTSK 73
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 15/104 (14%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
S L G A + + MG + R+ + RA+RAA+ NP+RAVEYL +GIP
Sbjct: 135 SALALGEQRTAAIAGMEAMG---FARDQIDRAMRAAFFNPDRAVEYLLNGIPAS------ 185
Query: 219 ARASAGGQAGNP-PAQTQAQQPAAPAP----TSGPNAN-PLDLF 256
A+ A +P P Q QQP APA T+ P+ + P++LF
Sbjct: 186 AQQEERPAAASPRPTSNQGQQPVAPATIATETAAPSGDEPVNLF 229
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 20 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 79
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E +FVVVM+TK
Sbjct: 80 DYRIDEKNFVVVMVTK 95
>gi|389583319|dbj|GAB66054.1| DNA repair protein RAD23, partial [Plasmodium cynomolgi strain B]
Length = 117
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Query: 347 VTVTP---EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 395
+ +TP E E+I++LE++GF + L LE F AC+KNEE+AANYL ++M+++
Sbjct: 30 IPITPLNENEMESIKKLESLGFPKHLALEAFIACDKNEEMAANYLFENMNDY 81
>gi|123398957|ref|XP_001301380.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123497770|ref|XP_001327247.1| polyubiquitin [Trichomonas vaginalis G3]
gi|154420157|ref|XP_001583094.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121882554|gb|EAX88450.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910174|gb|EAY15024.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121917333|gb|EAY22108.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 132
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVL 101
+ + ++S L V+R G + ++ P L++L
Sbjct: 58 DYSIQKDS----TLHLVLRLRGGGKEAYE------PSLRIL 88
>gi|353237727|emb|CCA69693.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Piriformospora indica DSM 11827]
Length = 408
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 218
++ + GS LE +Q ++DMG ++R V RA+RA++NNP+RA +YL++GIP P
Sbjct: 141 TSFLTGSALETAIQGLMDMG---FERPQVERAMRASFNNPDRAADYLFNGIPPGLLPTPA 197
Query: 219 AR 220
AR
Sbjct: 198 AR 199
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL+ F ++V+PE V +K+ I G +P + Q LI+ GKVL D ++
Sbjct: 1 MKITIKTLQQKLFTVDVEPEQTVQAIKEKINEEHG---HPVASQKLIYSGKVLDDAKVVK 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V+M+
Sbjct: 58 DCNFKEKDFLVLMV 71
>gi|312077797|ref|XP_003141460.1| ubiquitin/ribosomal fusion protein [Loa loa]
Length = 702
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 526 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 582
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVL-----RLLPRHNQRLHLRL 115
+ + + S + ++L +R + P L QL Q+ + Q+ RL PR +
Sbjct: 583 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCEKQICRKCYARLPPRATNCRKKKC 640
Query: 116 LHQLWHRHNLSLNLLLLLLLLLLLLLLLL 144
H R LN+ + L + + +++L
Sbjct: 641 GHSNDLRIKKKLNITFVFLEIFPVGVIVL 669
>gi|159162478|pdb|1IFY|A Chain A, Solution Structure Of The Internal Uba Domain Of Hhr23a
Length = 49
Score = 57.8 bits (138), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 2 LVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 48
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76
V +K+ IET +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK
Sbjct: 42 VKALKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 95
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 205
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 192 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYL 245
>gi|282601359|ref|ZP_05981478.2| ubiquitin family protein [Subdoligranulum variabile DSM 15176]
gi|282569316|gb|EFB74851.1| ubiquitin family [Subdoligranulum variabile DSM 15176]
Length = 721
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+VFVK L G H +EV+P D++ DVK+ I+ +G P +Q LI GK+L+D TL+
Sbjct: 76 MQVFVKRLAGKHITLEVEPTDRIEDVKQKIQDKEG---IPPERQRLIFAGKILEDGNTLQ 132
Query: 61 ENKVAENSFVVVM 73
+ + ++S + ++
Sbjct: 133 DYSIRKDSTIYLV 145
>gi|154416733|ref|XP_001581388.1| ubiquitin [Trichomonas vaginalis G3]
gi|121915615|gb|EAY20402.1| ubiquitin, putative [Trichomonas vaginalis G3]
Length = 166
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 35 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 91
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 92 DYSIQKDSTLHLVL 105
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 100/233 (42%), Gaps = 41/233 (17%)
Query: 169 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGG 225
A + I+ MG DRE V ALRAAY N +RAVE+L +GIP +Q +ASA G
Sbjct: 145 ALIDSIVAMGFN--DREQVSLALRAAYMNADRAVEFLCTGIPPHVQQQLAEADLQASAMG 202
Query: 226 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----QQF 281
+A P A G P + +G GT LR +
Sbjct: 203 RAAVPSA--------------------------GTPPSDAGSG-GTQSDLRRALSAIPHI 235
Query: 282 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI--NEPVEGGEGNVLGQL 339
R+++Q NPQ + +L + P + L Q+ +F R + + + ++
Sbjct: 236 DDFRSLLQNNPQAFSALAGQLLENFPQVGELAQQDPEEFARFMMAGSVPDNADQTLVTAG 295
Query: 340 ASAMPQAVTVTPEEREAIERLEAMG---FDRALVLEVFFACNKNEELAANYLL 389
+ + A + E+R A+ RL +G + E + C + E+ AA++LL
Sbjct: 296 ETEVDDAQPLGEEDRAAVNRLVLLGEGAWGEREATEAYRMCGRREDAAAHFLL 348
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K++ G E EV P+ KV D+KK +E S+ P S + L + +VL+D T+E
Sbjct: 1 MRIILKSVLGKKREHEVSPDTKVEDIKKFLE----SEYTPQSLR-LCYNNRVLEDPMTME 55
Query: 61 ENKVAENSFVVVMLTK 76
+ + E++ +V + K
Sbjct: 56 QLGIGEDTVIVYVGKK 71
>gi|403264482|ref|XP_003924511.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403264484|ref|XP_003924512.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 128
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKKG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
+N + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 58 DNNIQKESTLHLVLH--LRGGIIEPSLHQLAQKYSWDKMICR---KCYARLHPRAVNCCK 112
Query: 121 HRHNLSLNL 129
++ + NL
Sbjct: 113 RKYGHTNNL 121
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTK 76
E + + FVVVM+ +
Sbjct: 61 EVMIDPSKFVVVMIAR 76
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 165 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212
S E T Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+
Sbjct: 124 SEQEETAQAIVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEE 168
>gi|123390682|ref|XP_001299927.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880876|gb|EAX86997.1| polyubiquitin [Trichomonas vaginalis G3]
Length = 153
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V+D+KK I+ QG + Q LI+ GK+L D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQGHTI---ESQKLIYSGKILPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTK 76
++ E F+V+M++K
Sbjct: 58 SCEIKEKDFLVLMVSK 73
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 41/50 (82%), Gaps = 3/50 (6%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207
+++ + G L++T+Q +++MG ++R+ V+RALRA++NNP+RAVEYL++
Sbjct: 150 SNSFLTGEALQSTIQNMMEMG---FERDQVMRALRASFNNPDRAVEYLFN 196
>gi|123390686|ref|XP_001299928.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880877|gb|EAX86998.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 186
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 110 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 166
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 167 DYSIQKDSTLHLVL 180
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL++ +
Sbjct: 38 VKTLTGKHITLEVEPTDRIEDVKTKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQDYSI 94
Query: 65 AENSFVVVML 74
++S + ++L
Sbjct: 95 QKDSTLHLVL 104
>gi|154416813|ref|XP_001581428.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121915655|gb|EAY20442.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 147
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFV 70
+ + ++S +
Sbjct: 134 DYSIQKDSIL 143
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|429327043|gb|AFZ78850.1| polyubiquitin [Coptotermes formosanus]
Length = 230
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|123471218|ref|XP_001318810.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479158|ref|XP_001322738.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123501326|ref|XP_001328048.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121901578|gb|EAY06587.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905590|gb|EAY10515.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910986|gb|EAY15825.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|123445177|ref|XP_001311351.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121893157|gb|EAX98421.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 229
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|1101011|gb|AAC46935.1| polyubiquitin, partial [Trichomonas vaginalis]
Length = 770
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 10 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 66
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 67 DYSIQKDSTLHLVL 80
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 86 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 142
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 143 DYSIQKDSTLHLVL 156
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 162 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 218
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 219 DYSIQKDSTLHLVL 232
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 238 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 294
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 295 DYSIQKDSTLHLVL 308
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 314 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 370
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 371 DYSIQKDSTLHLVL 384
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 390 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 446
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 447 DYSIQKDSTLHLVL 460
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 466 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 522
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 523 DYSIQKDSTLHLVL 536
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 542 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 598
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 599 DYSIQKDSTLHLVL 612
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 618 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 674
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 675 DYSIQKDSTLHLVL 688
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 694 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQVKEG---IPPDQQGLIFAGKQLEDGKTLQ 750
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 751 DYSIQKDSTLHLVL 764
>gi|332854163|ref|XP_003316257.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Pan
troglodytes]
gi|397493861|ref|XP_003817814.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 7 [Pan
paniscus]
Length = 175
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 104
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 105 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 159
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 160 KKCGHTNNL 168
>gi|443893900|dbj|GAC71356.1| small Nuclear ribonucleoprotein splicing factor [Pseudozyma
antarctica T-34]
Length = 176
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 279 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 338
+ F + +VQ NP LQP++Q + + NP L + L L+ G +
Sbjct: 64 KDFLVVMQLVQQNPAALQPLVQAIAQSNPQLAEAMNHDPQGVLSLLAGGAGGAGEEM--- 120
Query: 339 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+P ++ E+R +E++ AMG +E FF C KN E+A Y ++ +F+D
Sbjct: 121 ---ELPTLAELSDEDRAGVEQIVAMGIPEDKAIESFFMCGKNVEMAVQYYFENPQDFDD 176
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K+ I+ QG + Q +I GK+L D T+
Sbjct: 1 MKLLIKSLAGGNFHLDAELSDTIGAIKQKIQAEQG---HKPEWQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVM 73
+ + E F+VVM
Sbjct: 58 DCNIKEKDFLVVM 70
>gi|123454697|ref|XP_001315100.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479152|ref|XP_001322735.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479160|ref|XP_001322739.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897766|gb|EAY02877.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905587|gb|EAY10512.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905591|gb|EAY10516.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|426387854|ref|XP_004060377.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Gorilla
gorilla gorilla]
Length = 175
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 104
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 105 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 159
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 160 KKCGHTNNL 168
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 24/156 (15%)
Query: 169 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 228
A + ++ MG DR V ALRAAY N +RAVE+L SGIP +
Sbjct: 142 ALIDTVVSMG--FEDRTQVALALRAAYMNVDRAVEFLCSGIPSNVE-----------RDL 188
Query: 229 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 288
P +Q P P+S A P + +G+ L +F+ +R +V
Sbjct: 189 GPVFHDDSQHGMFPIPSSMAPAAPTE-----------GSGSALEQALMAVPRFEEIREIV 237
Query: 289 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ANPQ + +Q+L P + RL+Q++ +F ++
Sbjct: 238 RANPQAIASAVQQLQLHYPDIARLVQQNPQEFATIM 273
>gi|12084372|pdb|1F4I|A Chain A, Solution Structure Of The Hhr23a Uba(2) Mutant P333e,
Deficient In Binding The Hiv-1 Accessory Protein Vpr
Length = 45
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 37/46 (80%), Gaps = 2/46 (4%)
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+E+EAIERL+A+GF+ +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 1 QEKEAIERLKALGFEESLVIQAYFACEKNENLAANFLLS--QNFDD 44
>gi|9955429|dbj|BAB12223.1| RAD23 homolog [Hydractinia echinata]
Length = 101
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
+ L FLRN QFQ +R VQ +P+ L +LQE+G+ NP L++LI ++Q F+ L+NE
Sbjct: 1 SAVADLSFLRNLPQFQLMRDQVQEHPESLPQLLQEIGQSNPQLLQLISQNQEAFIALLNE 60
>gi|123454695|ref|XP_001315099.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897765|gb|EAY02876.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|355715049|gb|AES05208.1| RAD23-like protein A [Mustela putorius furo]
Length = 102
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 23/108 (21%)
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
G L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 1 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 60
Query: 328 VEGGEGNVLGQLAS-------------AMPQA--VTVTPEEREAIERL 360
G+LA PQ + VTP+E+EAIER+
Sbjct: 61 P--------GELADISDVEGEGGAIGEEAPQMNYIQVTPQEKEAIERV 100
>gi|7245807|pdb|1DV0|A Chain A, Refined Nmr Solution Structure Of The C-Terminal Uba
Domain Of The Human Homologue Of Rad23a (Hhr23a)
Length = 47
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Query: 352 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 46
>gi|148693134|gb|EDL25081.1| mCG67952 [Mus musculus]
Length = 128
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGLTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQ--VGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S L V+R H + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKES----TLHLVLRLHGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|344283081|ref|XP_003413301.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Loxodonta
africana]
Length = 179
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 52 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 108
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 109 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 163
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 164 KKCGHTNNL 172
>gi|402869938|ref|XP_003899000.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Papio anubis]
Length = 128
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIKPSLCQLAQKYNRNKMICR---KCYARLHPR 106
>gi|210076049|ref|XP_002143115.1| YALI0F18403p [Yarrowia lipolytica]
gi|199424967|emb|CAR65204.1| YALI0F18403p [Yarrowia lipolytica CLIB122]
Length = 77
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G E++V+PED++S +K+ IE ++G P +QQ L+ GK L+D T+
Sbjct: 1 MKIKIKTLIGKEIEMDVEPEDQISVLKEKIEELEG---IPPAQQRLVFTGKQLQDEKTIA 57
Query: 61 ENKV 64
ENK+
Sbjct: 58 ENKI 61
>gi|225703194|gb|ACO07443.1| Ubiquitin [Oncorhynchus mykiss]
Length = 128
Score = 55.1 bits (131), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|330688314|gb|AEC32931.1| ubiquitin [Pachycara brachycephalum]
Length = 129
Score = 54.7 bits (130), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|80751129|ref|NP_001032190.1| 60S ribosomal protein L40 [Danio rerio]
gi|77567706|gb|AAI07518.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Danio
rerio]
gi|111494058|gb|AAI05747.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Danio
rerio]
Length = 128
Score = 54.7 bits (130), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCEKMICR---KCYARLHPR 106
>gi|426387866|ref|XP_004060383.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 11 [Gorilla
gorilla gorilla]
Length = 158
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 31 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 87
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 88 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 142
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 143 KKCGHTNNL 151
>gi|148708840|gb|EDL40787.1| mCG7881 [Mus musculus]
Length = 128
Score = 54.7 bits (130), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLPGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|61378584|gb|AAX44930.1| ubiquitin/ribosomal fusion protein [Bubalus bubalis]
Length = 128
Score = 54.7 bits (130), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIRKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|113431898|emb|CAJ90900.1| ubiquitin/ribosomal fusion protein homologue [Salmo salar]
Length = 135
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 10 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 66
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 67 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 121
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 122 KKCGHTNNL 130
>gi|417407935|gb|JAA50559.1| Putative ubiquitin-60s ribosomal protein, partial [Desmodus
rotundus]
Length = 132
Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 62 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 110
>gi|109052650|ref|XP_001092853.1| PREDICTED: ubiquitin-like [Macaca mulatta]
gi|355560077|gb|EHH16805.1| hypothetical protein EGK_12156 [Macaca mulatta]
Length = 145
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EVKP D DVK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVKPSDTNEDVKAKIQDKEG---IPPDQQHLILAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + E S + ++L +R + P L QL Q+
Sbjct: 58 DYDIWEESTLHLVLR--LRGSIIEPSLRQLFQK 88
>gi|213512766|ref|NP_001133215.1| ubiquitin A-52 residue ribosomal protein fusion product 1like 2
[Salmo salar]
gi|197632325|gb|ACH70886.1| ubiquitin A-52 residue ribosomal protein fusion product 1-like
[Salmo salar]
gi|197632609|gb|ACH71028.1| ubiquitin A-52 residue ribosomal protein fusion product 1like 2
[Salmo salar]
gi|209731296|gb|ACI66517.1| Ubiquitin [Salmo salar]
gi|209731836|gb|ACI66787.1| Ubiquitin [Salmo salar]
gi|221219244|gb|ACM08283.1| Ubiquitin [Salmo salar]
gi|225704338|gb|ACO08015.1| Ubiquitin [Oncorhynchus mykiss]
gi|225705386|gb|ACO08539.1| Ubiquitin [Oncorhynchus mykiss]
gi|303661345|gb|ADM16032.1| Ubiquitin [Salmo salar]
Length = 128
Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|355703331|gb|EHH29822.1| Polyubiquitin-C [Macaca mulatta]
Length = 128
Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDAIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|223646368|gb|ACN09942.1| Ubiquitin [Salmo salar]
gi|223672215|gb|ACN12289.1| Ubiquitin [Salmo salar]
Length = 128
Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|440904014|gb|ELR54587.1| Ubiquitin-60S ribosomal protein L40, partial [Bos grunniens mutus]
Length = 131
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 61 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 109
>gi|4507761|ref|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]
gi|9845265|ref|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus musculus]
gi|13928952|ref|NP_113875.1| ubiquitin-60S ribosomal protein L40 [Rattus norvegicus]
gi|47523498|ref|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa]
gi|52346160|ref|NP_001005123.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Xenopus
(Silurana) tropicalis]
gi|57164317|ref|NP_001009286.1| ubiquitin-60S ribosomal protein L40 [Ovis aries]
gi|77539055|ref|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]
gi|115496708|ref|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos taurus]
gi|148236927|ref|NP_001085456.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Xenopus
laevis]
gi|197101265|ref|NP_001124707.1| 60S ribosomal protein L40 [Pongo abelii]
gi|224994156|ref|NP_001116826.1| ubiquitin A-52 residue ribosomal protein fusion product 1 precursor
[Felis catus]
gi|224994158|ref|NP_001121567.1| ubiquitin-60S ribosomal protein L40 [Canis lupus familiaris]
gi|307691235|ref|NP_001182685.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Macaca
mulatta]
gi|334878539|ref|NP_001229382.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Equus
caballus]
gi|126323475|ref|XP_001363046.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Monodelphis
domestica]
gi|296233314|ref|XP_002761958.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Callithrix jacchus]
gi|296233316|ref|XP_002761959.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 3
[Callithrix jacchus]
gi|301753933|ref|XP_002912779.1| PREDICTED: ubiquitin-like [Ailuropoda melanoleuca]
gi|332854147|ref|XP_001135183.2| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Pan
troglodytes]
gi|332854157|ref|XP_003316254.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Pan
troglodytes]
gi|332854161|ref|XP_003339364.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 6 [Pan
troglodytes]
gi|332854165|ref|XP_003316256.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Pan
troglodytes]
gi|332854172|ref|XP_003339365.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 7 [Pan
troglodytes]
gi|332854176|ref|XP_003316259.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Pan
troglodytes]
gi|345327641|ref|XP_001508987.2| PREDICTED: ubiquitin-60S ribosomal protein L40-like
[Ornithorhynchus anatinus]
gi|354473967|ref|XP_003499203.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 1
[Cricetulus griseus]
gi|354473969|ref|XP_003499204.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Cricetulus griseus]
gi|395847937|ref|XP_003796620.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Otolemur
garnettii]
gi|395847939|ref|XP_003796621.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Otolemur
garnettii]
gi|397493849|ref|XP_003817808.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Pan
paniscus]
gi|397493851|ref|XP_003817809.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Pan
paniscus]
gi|397493853|ref|XP_003817810.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Pan
paniscus]
gi|397493855|ref|XP_003817811.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Pan
paniscus]
gi|397493857|ref|XP_003817812.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Pan
paniscus]
gi|397493859|ref|XP_003817813.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 6 [Pan
paniscus]
gi|397493863|ref|XP_003817815.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 8 [Pan
paniscus]
gi|397493865|ref|XP_003817816.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 9 [Pan
paniscus]
gi|397493867|ref|XP_003817817.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 10 [Pan
paniscus]
gi|402904821|ref|XP_003915237.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Papio
anubis]
gi|402904823|ref|XP_003915238.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Papio
anubis]
gi|402904825|ref|XP_003915239.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Papio
anubis]
gi|402904827|ref|XP_003915240.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Papio
anubis]
gi|403303449|ref|XP_003942339.1| PREDICTED: ubiquitin-60S ribosomal protein L40 [Saimiri boliviensis
boliviensis]
gi|410053489|ref|XP_003953464.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 8 [Pan
troglodytes]
gi|410053491|ref|XP_003953465.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 9 [Pan
troglodytes]
gi|426387846|ref|XP_004060373.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 1 [Gorilla
gorilla gorilla]
gi|426387848|ref|XP_004060374.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 2 [Gorilla
gorilla gorilla]
gi|426387850|ref|XP_004060375.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Gorilla
gorilla gorilla]
gi|426387852|ref|XP_004060376.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 4 [Gorilla
gorilla gorilla]
gi|426387856|ref|XP_004060378.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 6 [Gorilla
gorilla gorilla]
gi|426387858|ref|XP_004060379.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 7 [Gorilla
gorilla gorilla]
gi|426387860|ref|XP_004060380.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 8 [Gorilla
gorilla gorilla]
gi|426387862|ref|XP_004060381.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 9 [Gorilla
gorilla gorilla]
gi|426387864|ref|XP_004060382.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 10 [Gorilla
gorilla gorilla]
gi|302393708|sp|P63048.2|RL40_BOVIN RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393711|sp|P63050.2|RL40_CANFA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393717|sp|P63052.2|RL40_FELCA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393718|sp|P62987.2|RL40_HUMAN RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; AltName: Full=Ubiquitin A-52 residue
ribosomal protein fusion product 1; Contains: RecName:
Full=Ubiquitin; Contains: RecName: Full=60S ribosomal
protein L40; Flags: Precursor
gi|302393721|sp|P0C273.2|RL40_MACFA RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393722|sp|P62984.2|RL40_MOUSE RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393725|sp|P68205.2|RL40_OPHHA RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=60S
ribosomal protein L40; AltName: Full=CEP52; Flags:
Precursor
gi|302393726|sp|P63053.2|RL40_PIG RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; AltName: Full=Ubiquitin A-52 residue
ribosomal protein fusion product 1; Contains: RecName:
Full=Ubiquitin; Contains: RecName: Full=60S ribosomal
protein L40; Flags: Precursor
gi|302393727|sp|P0C275.2|RL40_PONPY RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393728|sp|P62986.2|RL40_RAT RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|302393729|sp|P0C276.2|RL40_SHEEP RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; Flags: Precursor
gi|7439591|pir||I65237 ubiquitin / ribosomal protein L40, cytosolic [validated] - rat
gi|10442712|gb|AAG17445.1|AF297036_1 ubiquitin fusion protein [Ophiophagus hannah]
gi|37565|emb|CAA40313.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|37567|emb|CAA40312.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|37569|emb|CAA40314.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|600538|gb|AAA56988.1| ubiquitin [synthetic construct]
gi|1050758|emb|CAA57958.1| ubiquitin/ribosomal protein L40 [Rattus norvegicus]
gi|1628608|gb|AAB52914.1| ubiquitin/ribosomal fusion protein [Sus scrofa]
gi|3288887|gb|AAC25582.1| ubiquitin-52 amino acid fusion protein [Homo sapiens]
gi|4139066|gb|AAD03678.1| ubiquitin/ribosomal protein CEP52 fusion protein [Cricetulus sp.]
gi|4262555|gb|AAD14688.1| ubiquitin/60S ribosomal fusion protein [Mus musculus]
gi|5822852|dbj|BAA83996.1| ubiquitin [Canis lupus familiaris]
gi|6692804|dbj|BAA89414.1| ubiquitin [Felis catus]
gi|12858585|dbj|BAB31371.1| unnamed protein product [Mus musculus]
gi|15928599|gb|AAH14772.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|32484364|gb|AAH54413.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|38494519|gb|AAH61544.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Rattus
norvegicus]
gi|45642969|gb|AAS72379.1| ubiqitin RPL40 fusion protein [Ovis aries]
gi|49255973|gb|AAH72791.1| MGC80109 protein [Xenopus laevis]
gi|50603988|gb|AAH77658.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Xenopus
(Silurana) tropicalis]
gi|51874063|gb|AAH80838.1| Uba52 protein [Mus musculus]
gi|55725462|emb|CAH89595.1| hypothetical protein [Pongo abelii]
gi|56541098|gb|AAH86924.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|56971100|gb|AAH87922.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Mus
musculus]
gi|67969366|dbj|BAE01035.1| unnamed protein product [Macaca fascicularis]
gi|74268013|gb|AAI02249.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Bos
taurus]
gi|75516919|gb|AAI01833.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|75517948|gb|AAI01831.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|89269516|emb|CAJ83027.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Xenopus
(Silurana) tropicalis]
gi|92918941|gb|ABE96835.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|119605121|gb|EAW84715.1| ubiquitin A-52 residue ribosomal protein fusion product 1, isoform
CRA_a [Homo sapiens]
gi|119605122|gb|EAW84716.1| ubiquitin A-52 residue ribosomal protein fusion product 1, isoform
CRA_a [Homo sapiens]
gi|119605123|gb|EAW84717.1| ubiquitin A-52 residue ribosomal protein fusion product 1, isoform
CRA_a [Homo sapiens]
gi|119605124|gb|EAW84718.1| ubiquitin A-52 residue ribosomal protein fusion product 1, isoform
CRA_a [Homo sapiens]
gi|148673756|gb|EDL05703.1| mCG6478 [Mus musculus]
gi|148696881|gb|EDL28828.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696882|gb|EDL28829.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696883|gb|EDL28830.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696884|gb|EDL28831.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696885|gb|EDL28832.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696886|gb|EDL28833.1| mCG23116, isoform CRA_a [Mus musculus]
gi|148696887|gb|EDL28834.1| mCG23116, isoform CRA_a [Mus musculus]
gi|149036028|gb|EDL90694.1| ubiquitin A-52 residue ribosomal protein fusion product 1, isoform
CRA_a [Rattus norvegicus]
gi|149036029|gb|EDL90695.1| ubiquitin A-52 residue ribosomal protein fusion product 1, isoform
CRA_a [Rattus norvegicus]
gi|149036030|gb|EDL90696.1| ubiquitin A-52 residue ribosomal protein fusion product 1, isoform
CRA_a [Rattus norvegicus]
gi|189054488|dbj|BAG37261.1| unnamed protein product [Homo sapiens]
gi|219518886|gb|AAI43669.1| Ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
gi|281343542|gb|EFB19126.1| hypothetical protein PANDA_000559 [Ailuropoda melanoleuca]
gi|296486182|tpg|DAA28295.1| TPA: ubiquitin and ribosomal protein L40 [Bos taurus]
gi|307686201|dbj|BAJ21031.1| ubiquitin A-52 residue ribosomal protein fusion product 1
[synthetic construct]
gi|327239326|gb|AEA39530.1| ribosomal protein L40 [Ailuropoda melanoleuca]
gi|327239426|gb|AEA39580.1| ribosomal protein L40 [Ailuropoda melanoleuca]
gi|351713798|gb|EHB16717.1| Ubiquitin [Heterocephalus glaber]
gi|384949206|gb|AFI38208.1| ubiquitin-60S ribosomal protein L40 precursor [Macaca mulatta]
gi|387018310|gb|AFJ51273.1| Ubiquitin-60S ribosomal protein L40 [Crotalus adamanteus]
Length = 128
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|395513211|ref|XP_003760822.1| PREDICTED: ubiquitin-60S ribosomal protein L40 [Sarcophilus
harrisii]
Length = 182
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 55 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 111
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 112 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 166
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 167 KKCGHTNNL 175
>gi|185134441|ref|NP_001117666.1| ubiquitin [Oncorhynchus mykiss]
gi|348523133|ref|XP_003449078.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Oreochromis
niloticus]
gi|6633991|dbj|BAA88568.1| ubiquitin [Oncorhynchus mykiss]
gi|113707410|gb|ABI36601.1| ubiquitin/ribosomal protein L40 fusion protein [Bufo gargarizans]
gi|197632607|gb|ACH71027.1| ubiquitin A-52 residue ribosomal protein fusion product 1like 1
[Salmo salar]
gi|223646494|gb|ACN10005.1| Ubiquitin [Salmo salar]
gi|223672341|gb|ACN12352.1| Ubiquitin [Salmo salar]
gi|300677970|gb|ADK27292.1| ubiquitin [Siniperca chuatsi]
Length = 128
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|348558880|ref|XP_003465244.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cavia
porcellus]
Length = 191
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 64 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 120
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 121 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 175
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 176 KKCGHTNNL 184
>gi|124300855|dbj|BAF45923.1| ubiquitin [Solea senegalensis]
gi|164691021|dbj|BAF98693.1| ribosomal protein L40 [Solea senegalensis]
Length = 128
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGLIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 158 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 214
++ V+G E V+QI DMG + R+ + RALRA+YNNPERAVE L +G +P +A
Sbjct: 144 STGFVSGPEYELIVKQIEDMG---FSRDDITRALRASYNNPERAVELLLTGSVPAASA 198
>gi|123479154|ref|XP_001322736.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121905588|gb|EAY10513.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+ D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVESTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 53/245 (21%)
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ--------TAVPPVARASAGGQAGNPP 231
G DR + ALRAA+ N ERAVEYL+ GIP +A+ A A
Sbjct: 178 GFEDRNQIALALRAAFMNVERAVEYLFEGIPPHLVEELTPFSALTAPAAAPGASNPSASS 237
Query: 232 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 291
A +PAP P S A + L QF +R + N
Sbjct: 238 AAAAVPASDSPAPAVAP----------------STAESEMRAALSRIPQFDEIRILYNQN 281
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP----------------------VE 329
L ++Q++ ++P + I+ FL ++ E +
Sbjct: 282 TDTLPVVMQQIALRHPAVYEQIERDPEVFLSIMGESGQPGSASAPAGPAALSTAQAVVGD 341
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG---FDRALVLEVFFACNKNEELAAN 386
E + + QL S + +T E+R A+++L +G +D + V+ A +N+E+AA+
Sbjct: 342 AEESSFMNQLQSGL----ELTAEDRTAVQQLVELGGGMWDEQSAVLVYLATQRNQEVAAS 397
Query: 387 YLLDH 391
L +H
Sbjct: 398 VLFEH 402
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVV 72
+ V +N +V+
Sbjct: 56 DAGVKDNDSLVL 67
>gi|318946686|ref|NP_001187064.1| ribosomal protein L40 [Ictalurus punctatus]
gi|15293953|gb|AAK95169.1|AF401597_1 ribosomal protein L40 [Ictalurus punctatus]
Length = 128
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKVKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCEKMICR---KCYARLHPR 106
>gi|47604954|ref|NP_990406.1| ubiquitin-60S ribosomal protein L40 [Gallus gallus]
gi|2558539|emb|CAA82846.1| ubiquitin-ribosomal protein fusion protein [Gallus gallus]
Length = 128
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|5441519|emb|CAB46814.1| ubiquitin-ribosomal protein L40 fusion protein [Canis lupus
familiaris]
Length = 128
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R + P L QL Q+
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQK 88
>gi|72139704|ref|XP_789778.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like
[Strongylocentrotus purpuratus]
Length = 128
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ Q+ R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLRLLAQKYNCDKQICR---KCYARLHPR 106
>gi|109121596|ref|XP_001118431.1| PREDICTED: ubiquitin-like isoform 1 [Macaca mulatta]
gi|297274949|ref|XP_002800913.1| PREDICTED: ubiquitin-like isoform 2 [Macaca mulatta]
Length = 128
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNFDKMICR---KCYARLHPR 106
>gi|389584394|dbj|GAB67126.1| ubiquitin/ribosomal putative [Plasmodium cynomolgi strain B]
Length = 128
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+VFVKTL G ++V+P + + +VK IE +G P QQ LI+ GK L+DV +
Sbjct: 1 MQVFVKTLTGKTITLDVEPSETIRNVKSKIEDKEG---IPPDQQRLIYSGKQLEDVRFVA 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGAIEPSLAQLAQKYNCQKLICR---KCYARLHPR 106
>gi|402904829|ref|XP_003915241.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 5 [Papio
anubis]
Length = 135
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 64
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 65 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 119
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 120 KKCGHTNNL 128
>gi|13569612|gb|AAK31162.1| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo
sapiens]
Length = 141
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 14 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 70
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 71 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 125
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 126 KKCGHTNNL 134
>gi|355747111|gb|EHH51725.1| hypothetical protein EGM_11159 [Macaca fascicularis]
Length = 146
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EVKP D DVK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVKPSDTNEDVKAKIQDKEG---IPPDQQHLILAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + E S + ++L +R + P L QL Q+
Sbjct: 58 DYDIWEESTLHLVLR--LRGSIIEPSLPQLFQK 88
>gi|328864214|gb|AEB53190.1| ubuiquitin/ribosomal L40 fusion protein [Holothuria glaberrima]
Length = 128
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R R RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLRVLAQKYNCDKMICR---RCYARLHPR 106
>gi|295039418|emb|CBL53160.1| ubiquitin [Psammechinus miliaris]
Length = 128
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ Q+ R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLRILAQKYNQDKQICR---KCYARLHPR 106
>gi|124514026|ref|XP_001350369.1| 60S ribosomal protein L40/UBI, putative [Plasmodium falciparum 3D7]
gi|23615786|emb|CAD52778.1| 60S ribosomal protein L40/UBI, putative [Plasmodium falciparum 3D7]
Length = 128
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGAIEPSLAQLAQKYNCQKLICR---KCYARLHPR 106
>gi|301108213|ref|XP_002903188.1| ubiquitin-ribosomal fusion protein, putative [Phytophthora
infestans T30-4]
gi|262097560|gb|EEY55612.1| ubiquitin-ribosomal fusion protein, putative [Phytophthora
infestans T30-4]
Length = 128
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK+ I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRL 103
+ + + S + ++L +R + P L L ++ + Q+ R+
Sbjct: 58 DYNIQKESTLHLVLR--LRGGAIEPTLAALAKKTNCEKQICRI 98
>gi|337263153|gb|AEI69279.1| ribosomal protein L40 [Oncorhynchus masou formosanus]
Length = 128
Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIMEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|430800751|pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
Length = 91
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FV TL GTH +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 74
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 75 DYNIQKESTLHLVL 88
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 3/50 (6%)
Query: 159 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S+LV G + E+ VQ+++ MG +++ VI+A+RA +NNP+RA EYL SG
Sbjct: 81 SSLVLGEDFESVVQELVSMG---FEKPLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|444726621|gb|ELW67145.1| Ubiquitin-60S ribosomal protein L40 [Tupaia chinensis]
Length = 146
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 19 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 75
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 76 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 130
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 131 KKCGHTNNL 139
>gi|39725569|dbj|BAD04937.1| poryprotein [Bovine viral diarrhea virus 190cp]
Length = 3020
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1946 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 2002
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGP 85
+ + + S L V+R GP
Sbjct: 2003 DYNIQKES----TLHLVLRLRGGGP 2023
>gi|209735846|gb|ACI68792.1| Ubiquitin [Salmo salar]
Length = 128
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPFLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|393909523|gb|EJD75484.1| ubiquitin-60S ribosomal protein L40 [Loa loa]
Length = 128
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL Q+ + Q+ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCEKQICR 97
>gi|39725571|dbj|BAD04938.1| poryprotein [Bovine viral diarrhea virus T-20]
Length = 2420
Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1464 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1520
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGP 85
+ + + S L V+R GP
Sbjct: 1521 DYNIQKES----TLHLVLRLRGGGP 1541
>gi|294901159|ref|XP_002777264.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239884795|gb|EER09080.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEASFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|387592579|gb|EIJ87603.1| ubiquitin [Nematocida parisii ERTm3]
gi|387595206|gb|EIJ92831.1| ubiquitin [Nematocida parisii ERTm1]
Length = 132
Score = 52.8 bits (125), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|225704696|gb|ACO08194.1| Ubiquitin [Oncorhynchus mykiss]
Length = 128
Score = 52.8 bits (125), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +E +P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEAEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|294886021|ref|XP_002771518.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239875222|gb|EER03334.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEANFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|284044814|ref|YP_003395154.1| ubiquitin [Conexibacter woesei DSM 14684]
gi|283949035|gb|ADB51779.1| ubiquitin [Conexibacter woesei DSM 14684]
Length = 360
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + VK+ I+ +G P +Q LI+ G+VL+D TL
Sbjct: 26 MQIFVKTLTGKTITLEVEPSDSIEQVKQKIQDKEG---IPPDRQRLIYAGRVLEDGRTLA 82
Query: 61 ENKVAENS 68
+ + S
Sbjct: 83 DYNIQRES 90
>gi|323208|gb|AAA42855.1| nonstructural protein; putative helicase/protease; contains
duplication; contains ubiquitin-coding region; putative,
partial [Bovine viral diarrhea virus 1]
Length = 1896
Score = 52.8 bits (125), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 990 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 1046
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGP 85
+ + + S L V+R GP
Sbjct: 1047 DYNIQKES----TLHLVLRLRGGGP 1067
>gi|65306618|gb|AAY41882.1| ubiquitin [Gracilaria lemaneiformis]
Length = 128
Score = 52.8 bits (125), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D +S+VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDSISNVKTKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL ++ + +V R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGLIEPSLAQLARETNCERKVCR 97
>gi|449015586|dbj|BAM78988.1| 60S ribosomal protein L40, ubiquitin fusion protein
[Cyanidioschyzon merolae strain 10D]
Length = 128
Score = 52.8 bits (125), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIR-PKLQVLRLLPRHNQRLHLRLLHQL 119
+ + + S + ++L +R + P L L +Q K+ R R R H +
Sbjct: 58 DYNIQKESTLHLVLR--LRGGLIEPSLAALARQYNCEKMICRRCYARLPARAHNCRKRKC 115
Query: 120 WHRHNL 125
H NL
Sbjct: 116 GHSSNL 121
>gi|308498806|ref|XP_003111589.1| CRE-UBQ-2 protein [Caenorhabditis remanei]
gi|308239498|gb|EFO83450.1| CRE-UBQ-2 protein [Caenorhabditis remanei]
gi|341880845|gb|EGT36780.1| CBN-UBQ-2 protein [Caenorhabditis brenneri]
Length = 128
Score = 52.8 bits (125), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL Q+ Q+ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKQICR 97
>gi|291231495|ref|XP_002735697.1| PREDICTED: ribosomal protein L40-like isoform 1 [Saccoglossus
kowalevskii]
gi|291231497|ref|XP_002735698.1| PREDICTED: ribosomal protein L40-like isoform 2 [Saccoglossus
kowalevskii]
Length = 128
Score = 52.8 bits (125), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRMLAQKYNCEKMICR---KCYARLHPR 106
>gi|148684097|gb|EDL16044.1| mCG13235 [Mus musculus]
Length = 134
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 7 MQIFVKTLMGKTITLEVEPSDTIENVKAKIQDKEG---LPPDQQRLIFAGKQLEDGHTLS 63
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 64 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPRAVNCRK 118
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 119 RKCGHSNNL 127
>gi|17554758|ref|NP_499695.1| Protein UBQ-2 [Caenorhabditis elegans]
gi|302393710|sp|P49632.2|RL40_CAEEL RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; Flags:
Precursor
gi|468272|gb|AAC37252.1| ubiquitin/ribosomal fusion protein [Caenorhabditis elegans]
gi|3881474|emb|CAB04967.1| Protein UBQ-2 [Caenorhabditis elegans]
Length = 128
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL Q+ Q+ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKQICR 97
>gi|156083999|ref|XP_001609483.1| ubiquitin / ribosomal protein CEP52 [Babesia bovis T2Bo]
gi|154796734|gb|EDO05915.1| ubiquitin / ribosomal protein CEP52 [Babesia bovis]
Length = 131
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R + P L L Q+
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLVILAQK 88
>gi|225710628|gb|ACO11160.1| Ubiquitin [Caligus rogercresseyi]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPTLRLLAQKYNAEKMICR---KCYARLHPR 106
>gi|324523172|gb|ADY48201.1| Ubiquitin-60S ribosomal protein L40 [Ascaris suum]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL Q+ Q+ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKQICR 97
>gi|403300123|ref|XP_003940807.1| PREDICTED: uncharacterized protein LOC101032377 [Saimiri
boliviensis boliviensis]
Length = 458
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 147 LHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206
+ + V A N+V GS +A +Q ++ MG + E A++AAYNNP+RA+EYL
Sbjct: 103 IQAFKPVVAPAPQNMVTGSEYDAAIQNLIQMGFAKSECEA---AMKAAYNNPDRAIEYLL 159
Query: 207 SGI 209
+GI
Sbjct: 160 NGI 162
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G F+IEV+P + V ++K+ IE + + +QQ L+ +G +L++ T+
Sbjct: 1 MKIIIKTLSGQTFDIEVQPTETVLNIKEKIEQ---NKQFEIAQQKLLRKGTLLQNEQTVA 57
Query: 61 ENKVAENSFVVVMLT 75
E + E F+VVM+
Sbjct: 58 ELGLQEKDFLVVMVN 72
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 281 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 340
Q LR NP+ + +L +L + NP L + IQ++ ++LI +GGE +
Sbjct: 185 LQQLREQFIQNPEAILQLLPQLQQTNPQLYQQIQQNPEALVQLILGGHQGGEDEI----- 239
Query: 341 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
+T EE + + +L MGF + LE F AC+KN E AA+YL +
Sbjct: 240 -----ETEITQEEEQQLNQLIMMGFTKEDALEGFLACDKNVETAASYLFE 284
>gi|71033899|ref|XP_766591.1| ubiquitin/ribosomal fusion protein [Theileria parva strain
Muguga]
gi|68353548|gb|EAN34308.1| ubiquitin/ribosomal fusion protein, putative [Theileria parva]
gi|428673439|gb|EKX74352.1| ubiquitin/ribosomal fusion protein, putative [Babesia equi]
Length = 131
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R + P L L Q+
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLVILAQK 88
>gi|323230|gb|AAA02769.1| polyprotein [Bovine viral diarrhea virus 1-Osloss]
Length = 3975
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D +L
Sbjct: 1591 MQIFVKTLTGRTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRSLS 1647
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGP 85
+ + + S L V+R GP
Sbjct: 1648 DYNIQKES----TLHLVLRLRGSGP 1668
>gi|84997964|ref|XP_953703.1| ubiquitin/60S ribosomal fusion protein [Theileria annulata]
gi|65304700|emb|CAI73025.1| ubiquitin/60S ribosomal fusion protein, putative [Theileria
annulata]
Length = 131
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R + P L L Q+
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLVILAQK 88
>gi|55228560|gb|AAV44215.1| ubuiquitin/ribosomal L40 fusion protein [Scleronephthya
gracillimum]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLRILAQKYNCDKMICR---KCYARLHPR 106
>gi|109067209|ref|XP_001096612.1| PREDICTED: hypothetical protein LOC708161 [Macaca mulatta]
Length = 204
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D +VK I+ +G P QQ LI GK L+D TL
Sbjct: 78 MQIFVKTLTGKTITLEVEPSDTTENVKAKIQAKEG---IPLDQQRLIFAGKQLEDGRTLS 134
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLH 112
+ + + S + + L ++ + P L QL Q+ + R + RLH
Sbjct: 135 DCNIQKESILHLGLH--LQGGIIEPSLCQLAQKYNCDKMICR---KCCARLH 181
>gi|152925970|gb|ABS32204.1| ubiquitin fusion protein [Cyprinus carpio]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQ--VGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S L V+R + P L QL Q+ + + R + RLH R
Sbjct: 58 DYNIQKES----TLHLVLRLXGGIIEPSLRQLAQKYNCEKMICR---KCYARLHPR 106
>gi|159145744|gb|ABW90409.1| putative ribosomal protein L40 [Barentsia elongata]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQL 90
+ + + S + ++L +R + P L QL
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQL 85
>gi|268570951|ref|XP_002640882.1| C. briggsae CBR-UBQ-2 protein [Caenorhabditis briggsae]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTIPLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL Q+ Q+ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKQICR 97
>gi|15187109|gb|AAK91296.1|AF395864_1 ubiquitin [Branchiostoma belcheri]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRMLAQKYNCDKMICR---KCYARLHPR 106
>gi|225714096|gb|ACO12894.1| Ubiquitin [Lepeophtheirus salmonis]
gi|290462695|gb|ADD24395.1| Ubiquitin [Lepeophtheirus salmonis]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPTLRLLAQKYNADKMICR---KCYARLHPR 106
>gi|66362872|ref|XP_628402.1| 60S ribosomal protein L40 [Cryptosporidium parvum Iowa II]
gi|46229800|gb|EAK90618.1| 60S ribosomal protein L40 [Cryptosporidium parvum Iowa II]
Length = 132
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L +Q + + R
Sbjct: 62 DYNIQKESTLHLVLR--LRGGVIEPSLANLARQYNCEKMICR 101
>gi|403221428|dbj|BAM39561.1| Ubc protein [Theileria orientalis strain Shintoku]
Length = 131
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L Q+ + + R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLVILAQKYNCEKMICR 97
>gi|209730830|gb|ACI66284.1| Ubiquitin [Salmo salar]
Length = 127
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++F+KTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFIKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ V + S + ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|209879912|ref|XP_002141396.1| 60S ribosomal protein L40 [Cryptosporidium muris RN66]
gi|209557002|gb|EEA07047.1| 60S ribosomal protein L40, putative [Cryptosporidium muris RN66]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L +Q + + R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLANLARQYNCEKMICR 97
>gi|123495684|ref|XP_001326794.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121909714|gb|EAY14571.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 330
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328
A TL FLR Q NP++L L++L NP + LI+ FL +
Sbjct: 217 ASTLQFLRQLHQ----------NPELLPIYLKDLADNNPAVAPLIRNDPASFLVSLGVNP 266
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
+ + L + T EE++AI RLE +GFD V++VF AC+++E L + L
Sbjct: 267 SEFDLSSLKHKSEFETLMEKFTEEEQKAIHRLEKLGFDTTDVIQVFEACDRDENLTKSCL 326
>gi|47217408|emb|CAG00768.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRMLAQKYNCDKMICR---KCYARLHPR 106
>gi|154416656|ref|XP_001581350.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121915576|gb|EAY20364.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 231
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 4/60 (6%)
Query: 329 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
E E NV G ++ + Q ++P++REAI+RLEA GF++ LV++V++AC NEE A N L
Sbjct: 170 EAVEQNV-GDYSAKLEQ---LSPDQREAIKRLEANGFEKHLVIQVYYACEFNEENALNIL 225
>gi|189195066|ref|XP_001933871.1| integral membrane protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187979750|gb|EDU46376.1| integral membrane protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 435
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+FVKTL G H + V ED +S +K I+ +G P SQQ LI GK L+D TL
Sbjct: 211 FSIFVKTLTGKHITLSVWKEDTISMIKDMIQVKEG---IPLSQQRLIFNGKQLEDGRTLA 267
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQL 87
+ + EN F +V++ +R GP L
Sbjct: 268 DYGI-ENEFTIVLVLN-LRGGGTGPPL 292
>gi|121543733|gb|ABM55549.1| putative ribosomal protein Ubq/L40e [Maconellicoccus hirsutus]
Length = 128
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK+ I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPTLRILAQKYNCDKMICR---KCYARLHPR 106
>gi|1574969|gb|AAC47388.1| Ub52 [Acropora millepora]
Length = 129
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L L Q+ + R + RLH R ++
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLRLLAQKYNCDKMICR---KCYARLHPRAVNCRK 112
Query: 118 -QLWHRHNL 125
+ H +NL
Sbjct: 113 KKCGHSNNL 121
>gi|67614873|ref|XP_667394.1| ubiquitin / ribosomal protein CEP52 [Cryptosporidium hominis TU502]
gi|54658521|gb|EAL37158.1| ubiquitin / ribosomal protein CEP52 [Cryptosporidium hominis]
gi|323510495|dbj|BAJ78141.1| cgd7_2280 [Cryptosporidium parvum]
Length = 128
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L +Q + + R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLANLARQYNCEKMICR 97
>gi|110671470|gb|ABG81986.1| putative ubiquitin/ribosomal fusion protein [Diaphorina citri]
Length = 129
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L ++ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPTLKSLAEKYNCEKMICR---KCYARLHPR 106
>gi|554564|gb|AAA72502.1| beta-galactosidase/ubiquitin fusion protein, partial [synthetic
construct]
Length = 106
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 62
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R + P L QL Q+
Sbjct: 63 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQK 93
>gi|121543985|gb|ABM55657.1| putative ribosomal protein Ubq/L40e [Maconellicoccus hirsutus]
Length = 128
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK+ I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPTLKLLAQKYNCDKMICR---KCYARLHPR 106
>gi|440493001|gb|ELQ75520.1| putative Ubiquitin, Ubiquitin subgroup protein
[Trachipleistophora hominis]
Length = 78
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + DVK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTICDVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ V + S + ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|371639063|gb|AEX55073.1| ubiquitin [Salvelinus alpinus]
Length = 128
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTAKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|5523975|gb|AAD44040.1|AF104023_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 309
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 177 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 233
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLF-------QLHQQIRPKLQV-LRLLPR 106
+ + + S L V+R GP + + H I KL ++PR
Sbjct: 234 DYNIQKES----TLHLVLRLRGGGPAVCKKITNHEKCHVSIMDKLTAFFGIMPR 283
>gi|301754679|ref|XP_002913151.1| PREDICTED: ubiquitin-like [Ailuropoda melanoleuca]
Length = 80
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ Q + P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQDKEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|281343818|gb|EFB19402.1| hypothetical protein PANDA_000950 [Ailuropoda melanoleuca]
Length = 79
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ Q + P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQDKEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|76559884|tpe|CAI56329.1| TPA: ubiquitin-60S ribosomal L40 fusion protein [Vitis vinifera]
Length = 128
Score = 52.0 bits (123), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + L + +R + P L QL ++ + R + RLH R
Sbjct: 58 DYNIQKES--TLHLVRRLRGGIIEPSLMQLARKYNQDKMICR---KCYARLHPR 106
>gi|158187894|gb|ABW23236.1| ribosomal protein rpl40 [Eurythoe complanata]
Length = 128
Score = 52.0 bits (123), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRMLAQKYNCDKMICR---KCYARLHPR 106
>gi|5523977|gb|AAD44041.1|AF104024_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 365
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 233 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 289
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
+ + + S L V+R GP + +
Sbjct: 290 DYNIQKES----TLHLVLRLRGGGPAVCK 314
>gi|170595239|ref|XP_001902301.1| ubiquitin-like protein [Brugia malayi]
gi|158590088|gb|EDP28844.1| ubiquitin-like protein, putative [Brugia malayi]
gi|402587591|gb|EJW81526.1| ubiquitin/ribosomal fusion protein [Wuchereria bancrofti]
Length = 128
Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL Q+ + ++ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCEKKICR 97
>gi|157361519|gb|ABV44717.1| ubiquitin/ribosomal L40 fusion protein-like protein [Phlebotomus
papatasi]
Length = 128
Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRILAQKYNCDKMICR---KCYARLHPR 106
>gi|91080141|ref|XP_968519.1| PREDICTED: similar to ribosomal protein Ubq/L40e [Tribolium
castaneum]
gi|270005662|gb|EFA02110.1| hypothetical protein TcasGA2_TC007754 [Tribolium castaneum]
Length = 129
Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRLLAQKYNCDKMICR---KCYARLHPR 106
>gi|426241785|ref|XP_004014768.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Ovis aries]
Length = 156
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + VK I+ +G P QQ LI K L+D TL
Sbjct: 30 MQIFVKTLMGKTITLEVEPSDTIESVKAKIQDEEG---IPPDQQRLIFSSKELEDGRTLS 86
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + + L +R + P L QL Q+ + P+ RLH R ++
Sbjct: 87 DYNIQKESTLHLALR--LRGGIIEPSLRQLTQKYNCDKMI---CPKCYARLHPRAVNCRK 141
Query: 118 QLWHRHNL 125
+ H +NL
Sbjct: 142 KCSHTNNL 149
>gi|195342419|ref|XP_002037798.1| GM18458 [Drosophila sechellia]
gi|194132648|gb|EDW54216.1| GM18458 [Drosophila sechellia]
Length = 128
Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRILAQKYNCDKMICR---KCYARLHPR 106
>gi|422292930|gb|EKU20231.1| UV excision repair protein RAD23, partial [Nannochloropsis gaditana
CCMP526]
Length = 575
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
+L+ R QF LR +VQ+NP + +L +G+Q+P L+++I Q +F+ ++NEP+EG
Sbjct: 381 SLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEG 440
>gi|70909907|emb|CAJ17440.1| ribosomal protein Ubq/L40e [Agriotes lineatus]
gi|70909909|emb|CAJ17441.1| ribosomal protein Ubq/L40e [Biphyllus lunatus]
gi|70909911|emb|CAJ17442.1| ribosomal protein Ubq/L40e [Carabus granulatus]
gi|70909915|emb|CAJ17444.1| ribosomal protein Ubq/L40e [Julodis onopordi]
gi|332373432|gb|AEE61857.1| unknown [Dendroctonus ponderosae]
Length = 128
Score = 51.6 bits (122), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRILAQKYNCDKMICR---KCYARLHPR 106
>gi|70909913|emb|CAJ17443.1| ribosomal protein Ubq/L40e [Dascillus cervinus]
gi|70909917|emb|CAJ17445.1| ribosomal protein Ubq/L40e [Scarabaeus laticollis]
Length = 128
Score = 51.6 bits (122), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRILAQKYNCDKMICR---KCYARLHPR 106
>gi|17136570|ref|NP_476776.1| ribosomal protein L40, isoform A [Drosophila melanogaster]
gi|442625834|ref|NP_001260018.1| ribosomal protein L40, isoform B [Drosophila melanogaster]
gi|58390190|ref|XP_317555.2| AGAP007927-PA [Anopheles gambiae str. PEST]
gi|125986696|ref|XP_001357111.1| GA15543 [Drosophila pseudoobscura pseudoobscura]
gi|157113624|ref|XP_001652028.1| anopheles stephensi ubiquitin [Aedes aegypti]
gi|170032305|ref|XP_001844022.1| anopheles stephensi ubiquitin [Culex quinquefasciatus]
gi|194758697|ref|XP_001961598.1| GF15052 [Drosophila ananassae]
gi|194855956|ref|XP_001968650.1| GG24988 [Drosophila erecta]
gi|195035911|ref|XP_001989415.1| GH10063 [Drosophila grimshawi]
gi|195114034|ref|XP_002001572.1| GI16482 [Drosophila mojavensis]
gi|195160144|ref|XP_002020936.1| GL13989 [Drosophila persimilis]
gi|195401058|ref|XP_002059131.1| GJ16220 [Drosophila virilis]
gi|195437464|ref|XP_002066660.1| GK24609 [Drosophila willistoni]
gi|195471224|ref|XP_002087905.1| RpL40 [Drosophila yakuba]
gi|195550845|ref|XP_002076117.1| GD12014 [Drosophila simulans]
gi|302393715|sp|P18101.2|RL40_DROME RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=CEP52; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; Flags:
Precursor
gi|16118870|gb|AAL14636.1|AF418984_1 ubiquitin-52-amino-acid fusion protein [Aedes aegypti]
gi|8779|emb|CAA37227.1| unnamed protein product [Drosophila melanogaster]
gi|8785|emb|CAA42568.1| ubiquitin extension protein [Drosophila melanogaster]
gi|7295730|gb|AAF51034.1| ribosomal protein L40, isoform A [Drosophila melanogaster]
gi|16074119|emb|CAC94469.1| anopheles stephensi ubiquitin [Anopheles stephensi]
gi|18447400|gb|AAL68264.1| RE10554p [Drosophila melanogaster]
gi|38047797|gb|AAR09801.1| similar to Drosophila melanogaster RpL40, partial [Drosophila
yakuba]
gi|38048585|gb|AAR10195.1| similar to Drosophila melanogaster RpL40, partial [Drosophila
yakuba]
gi|54645438|gb|EAL34177.1| GA15543 [Drosophila pseudoobscura pseudoobscura]
gi|55237763|gb|EAA12215.2| AGAP007927-PA [Anopheles gambiae str. PEST]
gi|56417572|gb|AAV90727.1| 60S ribosomal protein L40 [Aedes albopictus]
gi|108877674|gb|EAT41899.1| AAEL006511-PA [Aedes aegypti]
gi|114864908|gb|ABI83782.1| ubiquitin [Anopheles funestus]
gi|167872308|gb|EDS35691.1| anopheles stephensi ubiquitin [Culex quinquefasciatus]
gi|190615295|gb|EDV30819.1| GF15052 [Drosophila ananassae]
gi|190660517|gb|EDV57709.1| GG24988 [Drosophila erecta]
gi|193905415|gb|EDW04282.1| GH10063 [Drosophila grimshawi]
gi|193912147|gb|EDW11014.1| GI16482 [Drosophila mojavensis]
gi|194117886|gb|EDW39929.1| GL13989 [Drosophila persimilis]
gi|194156005|gb|EDW71189.1| GJ16220 [Drosophila virilis]
gi|194162745|gb|EDW77646.1| GK24609 [Drosophila willistoni]
gi|194174006|gb|EDW87617.1| RpL40 [Drosophila yakuba]
gi|194201766|gb|EDX15342.1| GD12014 [Drosophila simulans]
gi|208657505|gb|ACI30049.1| ubiquitin/60S ribosomal protein L40 fusion [Anopheles darlingi]
gi|220947932|gb|ACL86509.1| RpL40-PA [synthetic construct]
gi|220957162|gb|ACL91124.1| RpL40-PA [synthetic construct]
gi|255710365|gb|ACU31002.1| ubiquitin/60S ribosomal protein L40 fusion [Ochlerotatus
triseriatus]
gi|270211317|gb|ACZ64922.1| ubiquitin-L40 ribosomal fusion protein [Aedes aegypti]
gi|312374067|gb|EFR21714.1| hypothetical protein AND_29478 [Anopheles darlingi]
gi|440213300|gb|AGB92554.1| ribosomal protein L40, isoform B [Drosophila melanogaster]
Length = 128
Score = 51.6 bits (122), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRILAQKYNCDKMICR---KCYARLHPR 106
>gi|452824950|gb|EME31950.1| ubiquitin [Galdieria sulphuraria]
Length = 128
Score = 51.6 bits (122), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523967|gb|AAD44036.1|AF104019_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 344
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 212 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 268
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
+ + + S L V+R GP + +
Sbjct: 269 DYNIQKES----TLHLVLRLRGGGPAVCK 293
>gi|109716253|gb|ABG43105.1| ubiquitin [Pectinaria gouldii]
Length = 128
Score = 51.6 bits (122), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|428698046|pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
gi|428698047|pdb|3VDZ|B Chain B, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
Length = 111
Score = 51.6 bits (122), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 92
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 93 DYNIQKESTLHLVL 106
>gi|432854586|ref|XP_004067974.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Oryzias
latipes]
Length = 130
Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|326430331|gb|EGD75901.1| ubiquitin/ribosomal protein CEP52 [Salpingoeca sp. ATCC 50818]
Length = 128
Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPNLKLLAQKYNCDKMICR---KCYARLHPR 106
>gi|324518859|gb|ADY47224.1| Ubiquitin-60S ribosomal protein L40 [Ascaris suum]
Length = 128
Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL Q+ ++ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCNKKICR 97
>gi|430800753|pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 91
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FV TL G H +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 18 MQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 74
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 75 DYNIQKESTLHLVL 88
>gi|12240039|gb|AAG49552.1|AF268491_1 ubiquitin [Biomphalaria glabrata]
gi|12240042|gb|AAG49553.1|AF268492_1 ubiquitin [Biomphalaria glabrata]
gi|12240012|gb|AAG49540.1| ubiquitin [Biomphalaria glabrata]
Length = 128
Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|405951523|gb|EKC19428.1| Ubiquitin [Crassostrea gigas]
Length = 128
Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|309266537|ref|XP_003086791.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Mus musculus]
Length = 203
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 78 VQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 134
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLH 112
+ + + S + ++L +R + P L QL Q+ + R + RLH
Sbjct: 135 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLH 181
>gi|283459000|gb|ADB22377.1| ubiquitin [Crassostrea hongkongensis]
Length = 128
Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|308512650|gb|ADO32980.1| ubiquitin b [Eriocheir sinensis]
gi|320382413|gb|ADW27185.1| ubiquitin/ribosomal L40 fusion protein [Eriocheir sinensis]
Length = 129
Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|326427340|gb|EGD72910.1| ubiquitin [Salpingoeca sp. ATCC 50818]
Length = 220
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS-----FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRL 111
+ + + S FV + K I +V P + ++ K+Q +P QRL
Sbjct: 58 DYNIQKESTLHLIFVKTLTGKTITL-EVEPS--DSIENVKAKIQDKEGIPPDQQRL 110
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 144 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 200
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 201 DYNIQKESTLHLVL 214
>gi|225703400|gb|ACO07546.1| Ubiquitin [Oncorhynchus mykiss]
Length = 128
Score = 51.2 bits (121), Expect = 9e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+ TL
Sbjct: 1 MQIFVKTLTGKTVTLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEGGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|260806905|ref|XP_002598324.1| hypothetical protein BRAFLDRAFT_113894 [Branchiostoma floridae]
gi|229283596|gb|EEN54336.1| hypothetical protein BRAFLDRAFT_113894 [Branchiostoma floridae]
Length = 600
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 ENKVAENS-----FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRL 111
+ + + S FV + K I +V P + ++ K+Q +P QRL
Sbjct: 438 DYNIQKESTLHLIFVKTLTGKTITL-EVEPS--DTIENVKAKIQDKEGIPPDQQRL 490
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 524 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 580
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 581 DYNIQKESTLHLVL 594
>gi|208435490|pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy
gi|306440386|pdb|2KX0|A Chain A, The Solution Structure Of Ubb+1, Frameshift Mutant Of
Ubiquitin B
Length = 103
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 61 ENKVAENSFVVVML 74
E + + S + ++L
Sbjct: 66 EYNIQKESTLHLVL 79
>gi|5523987|gb|AAD44046.1|AF104029_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 395
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 263 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 319
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
+ + + S L V+R GP + +
Sbjct: 320 DYNIQKES----TLHLVLRLRGGGPAVCK 344
>gi|333466063|gb|AEF33800.1| Ubi-gD2tr [synthetic construct]
Length = 383
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS--FVVVMLTKVIRFHQVGPQL 87
+ + + S +V+ L ++ P L
Sbjct: 58 DYNIQKESTLHLVLRLRGAAKYALADPSL 86
>gi|5523981|gb|AAD44043.1|AF104026_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 216
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 84 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 140
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
+ + + S L V+R GP + +
Sbjct: 141 DYNIQKES----TLHLVLRLRGGGPAVCK 165
>gi|340375318|ref|XP_003386183.1| PREDICTED: polyubiquitin-like [Amphimedon queenslandica]
Length = 968
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 22/128 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK+L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKILEDGRTLS 209
Query: 61 ENKVAENS--------------FVVVML---TKVIRFHQVGPQLFQLHQQIRPKLQVLRL 103
+ + + S FV + + T I F QV P + ++ K+Q
Sbjct: 210 DYNIQKESTLHLVLCFRHDMLIFVKIWIGNETGKIIFLQVEPS--NTIENVKAKIQDKER 267
Query: 104 LPRHNQRL 111
+P Q+L
Sbjct: 268 IPPDQQKL 275
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GKVL D TL
Sbjct: 628 MQIFVKTLTGRTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKVLVDDRTLS 684
Query: 61 ENKV 64
+ +
Sbjct: 685 DYNI 688
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + ++K I+ +G P QQ LI G+ L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTMENIKAKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 133
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 134 DYNIQKES 141
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD 55
M ++VKTL G FE+ V + + +VK IE G P +QQ +I+ G+ L+D
Sbjct: 541 MTIYVKTLTGKTFELNVIYCNTIGNVKTKIEETGG---IPCNQQKIIYDGRQLED 592
>gi|5523969|gb|AAD44037.1|AF104020_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 318
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 186 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 242
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
+ + + S L V+R GP + +
Sbjct: 243 DYNIQKES----TLHLVLRLRGGGPAVCK 267
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P Q+ LI GK L+D TL
Sbjct: 110 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQRRLIFAGKQLEDGRTLS 166
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 167 DYNIQKESTLHLVL 180
>gi|148664711|gb|EDK97127.1| mCG1031578 [Mus musculus]
Length = 122
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++F+KTL G +EVKP D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFMKTLTGKTITLEVKPSDTIENVKAKIQDKEG---IPPDQQRLIFTGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L P L QL Q+
Sbjct: 58 DYNIQKESTLHLVLHL--------PSLRQLAQK 82
>gi|392874240|gb|AFM85952.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|149242629|pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide-
Binding Tag
Length = 111
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 92
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 93 DYNIQKESTLHLVL 106
>gi|392874848|gb|AFM86256.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|442762197|gb|JAA73257.1| Putative ubiquitin/40s ribosomal protein s27a fusion, partial
[Ixodes ricinus]
Length = 129
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 53 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 109
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 110 DYNIQKESTLHLVL 123
>gi|149260017|ref|XP_985698.2| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Mus musculus]
Length = 203
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 78 VQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 134
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLH 112
+ + + S + ++L +R + P L QL Q+ + R + RLH
Sbjct: 135 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLH 181
>gi|152013697|gb|ABS19964.1| ubiquitin/ribosomal L40 fusion protein [Artemia franciscana]
Length = 129
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392883062|gb|AFM90363.1| ubiquitin/ribosomal L40 fusion protein [Callorhinchus milii]
gi|392883064|gb|AFM90364.1| ubiquitin/ribosomal L40 fusion protein [Callorhinchus milii]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392874782|gb|AFM86223.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392873562|gb|AFM85613.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum
CS3096]
Length = 242
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G + Q LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WQPQLQKLIYSGKILKDDETVG 57
Query: 61 ENKVAENSFVVVMLTK 76
+ E FVV M+ K
Sbjct: 58 SYNIEEKGFVVCMVNK 73
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D + S L GS + + MG ++R + A+RAA+NNP+RAVEYL +GIP
Sbjct: 124 ADAGSEEPSGLAMGSQRTEAIANMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIP 180
Query: 211 E 211
+
Sbjct: 181 D 181
>gi|392873546|gb|AFM85605.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392873746|gb|AFM85705.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392873918|gb|AFM85791.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874206|gb|AFM85935.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874268|gb|AFM85966.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874326|gb|AFM85995.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874392|gb|AFM86028.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874486|gb|AFM86075.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874560|gb|AFM86112.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874574|gb|AFM86119.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874648|gb|AFM86156.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874714|gb|AFM86189.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874718|gb|AFM86191.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874884|gb|AFM86274.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392874994|gb|AFM86329.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875042|gb|AFM86353.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875206|gb|AFM86435.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875390|gb|AFM86527.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875410|gb|AFM86537.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875770|gb|AFM86717.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392875828|gb|AFM86746.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392876496|gb|AFM87080.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392876738|gb|AFM87201.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877088|gb|AFM87376.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877618|gb|AFM87641.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877774|gb|AFM87719.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877822|gb|AFM87743.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392877918|gb|AFM87791.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392878102|gb|AFM87883.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392878372|gb|AFM88018.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392879328|gb|AFM88496.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392879514|gb|AFM88589.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392879830|gb|AFM88747.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392880522|gb|AFM89093.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392881620|gb|AFM89642.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392882226|gb|AFM89945.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392882556|gb|AFM90110.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392883408|gb|AFM90536.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392883792|gb|AFM90728.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392883942|gb|AFM90803.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392884134|gb|AFM90899.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|221057444|ref|XP_002261230.1| ubiquitin/ribosomal fusion protein uba52 homologue [Plasmodium
knowlesi strain H]
gi|194247235|emb|CAQ40635.1| ubiquitin/ribosomal fusion protein uba52 homologue, putative
[Plasmodium knowlesi strain H]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+VFVKTL G ++V+ + + +VK IE +G P QQ LI+ GK L+DV +
Sbjct: 1 MQVFVKTLTGKTITLDVEASETIRNVKSKIEDKEG---IPPDQQRLIYSGKQLEDVRFVA 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGAIEPSLAQLAQKYNCQKLICR---KCYARLHPR 106
>gi|440804161|gb|ELR25039.1| polyubiqutin [Acanthamoeba castellanii str. Neff]
Length = 76
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+VFV+TL G F I V+P D V VK+ +ETV+G P QQ+L+ L+D TL
Sbjct: 1 MEVFVRTLTGKAFVIMVRPGDTVESVKRVVETVEG---IPWDQQVLVCARCRLEDHRTLA 57
Query: 61 ENKVAENSFVVVML 74
++ V +++ + +ML
Sbjct: 58 QHGVQQHATLHLML 71
>gi|296205125|ref|XP_002749733.1| PREDICTED: polyubiquitin-C-like [Callithrix jacchus]
Length = 177
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 101 MQIFVKTLTGKTITFEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 157
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 158 DYNIQKESTLHLVL 171
>gi|392875450|gb|AFM86557.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|225715160|gb|ACO13426.1| Ubiquitin [Esox lucius]
Length = 92
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R P L QL Q+
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIFEPSLRQLAQK 88
>gi|432904346|ref|XP_004077285.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Oryzias
latipes]
Length = 209
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 54 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 110
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 111 DYNIQKESTLHLVL 124
>gi|567767|gb|AAA53067.1| p125 protein, partial [Bovine viral diarrhea virus 1]
Length = 1054
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 423 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 479
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLF-------QLHQQIRPKLQV-LRLLPR 106
+ + + S L V+R GP + + H I KL ++PR
Sbjct: 480 DYNIQKES----TLHLVLRLRGGGPAVCKKITNHEKCHVNIMDKLTAFFGIMPR 529
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 347 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 403
Query: 61 ENKVAENS--------------FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPR 106
+ + + S FV + K I +V P + ++ K+Q +P
Sbjct: 404 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPS--DTIENVKAKIQDKEGIPP 460
Query: 107 HNQRL 111
QRL
Sbjct: 461 DQQRL 465
>gi|5523979|gb|AAD44042.1|AF104025_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 432
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 300 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 356
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
+ + + S L V+R GP + +
Sbjct: 357 DYNIQKES----TLHLVLRLRGGGPAVCK 381
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 224 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 280
Query: 61 ENKVAENS--------------FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPR 106
+ + + S FV + K I +V P + ++ K+Q +P
Sbjct: 281 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPS--DTIENVKAKIQDKEGIPP 337
Query: 107 HNQRL 111
QRL
Sbjct: 338 DQQRL 342
>gi|22549552|ref|NP_689325.1| ubi gene product [Mamestra configurata NPV-B]
gi|215401377|ref|YP_002332681.1| ubiquitin [Helicoverpa armigera multiple nucleopolyhedrovirus]
gi|22476731|gb|AAM95137.1| putative ubiquitin [Mamestra configurata NPV-B]
gi|198448877|gb|ACH88667.1| ubiquitin [Helicoverpa armigera multiple nucleopolyhedrovirus]
gi|390165345|gb|AFL64992.1| ubiquitin [Mamestra brassicae MNPV]
gi|401665753|gb|AFP95865.1| putative ubiquitin [Mamestra brassicae MNPV]
Length = 100
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D V +K+ I +G P QQ LI+ GK L+D +T+
Sbjct: 1 MQIFVKTLTGKTVTVEVEPTDTVEQLKQKITDKEG---IPPDQQRLIYAGKQLEDSSTMS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|296211496|ref|XP_002752432.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
Length = 155
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLMGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+N + + S
Sbjct: 58 DNNIQKES 65
>gi|197129052|gb|ACH45550.1| putative ubiquitin C variant 1 [Taeniopygia guttata]
Length = 245
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 20/125 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS--------------FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPR 106
++ + + S FV + K I +V P + ++ K+Q +P
Sbjct: 58 DDNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPS--DTIENVKAKIQDKEGIPP 114
Query: 107 HNQRL 111
QRL
Sbjct: 115 DQQRL 119
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENS--------------FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPR 106
+ + + S FV + K I +V P + ++ K+Q +P
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPS--DTIENVKAKIQDKEGIPP 190
Query: 107 HNQRL 111
QRL
Sbjct: 191 DQQRL 195
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKV 64
+ +
Sbjct: 210 DYNI 213
>gi|299473697|emb|CBN78090.1| ubiquitin UbiA [Ectocarpus siliculosus]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++F KTL G ++V P D + VK+ I+ ++G PASQQ L+ K L+D TL
Sbjct: 1 MQIFGKTLTGRTITLDVAPSDTIDGVKQTIQDLEG---IPASQQRLVFAAKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLT 75
+ V + S + V+L+
Sbjct: 58 DYNVEQESTLQVLLS 72
>gi|392874990|gb|AFM86327.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L + + + R + + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGGMDPSLRLLAMKYNCEKMICR---KCHARLHPR 106
>gi|392874614|gb|AFM86139.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523973|gb|AAD44039.1|AF104022_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 228
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 96 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 152
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
+ + + S L V+R GP + +
Sbjct: 153 DYNIQKES----TLHLVLRLRGGGPAVCK 177
>gi|392874040|gb|AFM85852.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKARIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|387914034|gb|AFK10626.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
gi|392873442|gb|AFM85553.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|189308102|gb|ACD86935.1| ubiquitin/60s ribosomal protein L40 fusion [Caenorhabditis
brenneri]
gi|241017546|gb|ACS66688.1| putative ubiquitin family protein [Caenorhabditis brenneri]
Length = 127
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL +
Sbjct: 1 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSD 57
Query: 62 NKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + S + ++L +R + P L QL Q+ Q+ R
Sbjct: 58 YNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKQICR 96
>gi|237838205|ref|XP_002368400.1| ubiquitin / ribosomal protein CEP52 fusion protein, putative
[Toxoplasma gondii ME49]
gi|401402053|ref|XP_003881158.1| putative ubiquitin / ribosomal protein CEP52 fusion protein
[Neospora caninum Liverpool]
gi|211966064|gb|EEB01260.1| ubiquitin / ribosomal protein CEP52 fusion protein, putative
[Toxoplasma gondii ME49]
gi|221484327|gb|EEE22623.1| ubiquitin / ribosomal protein CEP52 fusion protein, putative
[Toxoplasma gondii GT1]
gi|221505694|gb|EEE31339.1| ubiquitin / ribosomal protein CEP52 fusion protein, putative
[Toxoplasma gondii VEG]
gi|314998875|gb|ADT65351.1| 10 kDa excretory-secretory antigen [Toxoplasma gondii]
gi|325115570|emb|CBZ51125.1| putative ubiquitin / ribosomal protein CEP52 fusion protein
[Neospora caninum Liverpool]
Length = 129
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L Q+ + +V R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLALLAQKYNCEKKVCR 97
>gi|225455266|ref|XP_002273568.1| PREDICTED: ubiquitin-60S ribosomal protein L40-2 [Vitis vinifera]
gi|302143958|emb|CBI23063.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL ++ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLMQLARKYNQDKMICR---KCYARLHPR 106
>gi|1167510|dbj|BAA09096.1| TI-225 [Mus musculus]
Length = 126
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392875502|gb|AFM86583.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAEIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|396477678|ref|XP_003840335.1| predicted protein [Leptosphaeria maculans JN3]
gi|312216907|emb|CBX96856.1| predicted protein [Leptosphaeria maculans JN3]
Length = 72
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + + K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIQAEPTETL---KAKIQADKGWEV---PQQKLIYSGKILQDAHTVE 54
Query: 61 ENKVAENSFVVVMLTKV 77
K+ E F+V M++KV
Sbjct: 55 SYKIEEKGFIVCMVSKV 71
>gi|123426228|ref|XP_001306990.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121888594|gb|EAX94060.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 321
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 350 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389
TPEE++AI+RL +GFD LV+ V+ AC+KNE L AN LL
Sbjct: 278 TPEEQDAIKRLCELGFDIHLVIHVYEACDKNEALTANCLL 317
>gi|356565543|ref|XP_003550999.1| PREDICTED: polyubiquitin-C-like [Glycine max]
Length = 533
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK IE +G P QQ LI GK L+D TLE
Sbjct: 381 MQIFVKTLTGKTITLEVESSDSIENVKAKIEEKEG---IPPDQQRLIFAGKQLEDGRTLE 437
Query: 61 ENKVAENS--------------FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPR 106
+ ++ + S FV + K I G + ++ K+Q +P
Sbjct: 438 DYEIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDTI---ENVKAKIQEKEGIPP 494
Query: 107 HNQRL 111
QRL
Sbjct: 495 DQQRL 499
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TLE
Sbjct: 457 MQIFVKTLTGKTITLEVEGSDTIENVKAKIQEKEG---IPPDQQRLIFAGKQLEDERTLE 513
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 514 DYDIQKESTLHLVL 527
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 285
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 361
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
>gi|124001067|ref|XP_001276954.1| Ubiquitin [Trichomonas vaginalis G3]
gi|124001069|ref|XP_001276955.1| Ubiquitin [Trichomonas vaginalis G3]
gi|121918940|gb|EAY23706.1| Ubiquitin, putative [Trichomonas vaginalis G3]
gi|121918941|gb|EAY23707.1| Ubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H ++V+ DK+ DVK I+ +G P QQ LI GK L+D LE
Sbjct: 1 MQLFVKTLTGKHITLDVESADKIEDVKAKIQDREG---IPHDQQRLIFAGKQLEDGNRLE 57
Query: 61 ENKVAENSFVVVML 74
+ + +++ + ++L
Sbjct: 58 DYSIQKDATLHLVL 71
>gi|196016140|ref|XP_002117924.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190579497|gb|EDV19591.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 99
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 58
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R + P L L Q+
Sbjct: 59 DYNIQKESTLHLVLR--LRGGVIEPSLRILAQK 89
>gi|259130077|gb|ACV95491.1| ubiquitin, partial [Lates calcarifer]
Length = 94
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL +
Sbjct: 1 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDY 57
Query: 63 KVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + S + ++L +R + P L QL Q+
Sbjct: 58 NIQKESTLHLVLR--LRGGIIEPSLRQLAQK 86
>gi|55669980|pdb|1TP4|A Chain A, Solution Structure Of The Xpc Binding Domain Of Hhr23a
Protein
Length = 97
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NE
Sbjct: 7 AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 66
Query: 327 P 327
P
Sbjct: 67 P 67
>gi|294860854|gb|ADF45323.1| ubiquitin/ribosomal L40 fusion protein [Eriocheir sinensis]
Length = 129
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ +I GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRIIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195565407|ref|XP_002106293.1| GD16200 [Drosophila simulans]
gi|194203667|gb|EDX17243.1| GD16200 [Drosophila simulans]
Length = 105
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|164510074|emb|CAJ32641.1| ubiquitin [Hediste diversicolor]
Length = 76
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQDKEG---IPPDQQRLIFAGKQLEDARTLS 57
Query: 61 ENKVAENSFVVVMLT 75
+ + + S + ++L+
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|296221018|ref|XP_002756700.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like, partial
[Callithrix jacchus]
Length = 138
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL+G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 12 MQIFVKTLRGKTITLEVEPSDTIENVKPKIQDKEG---IPPDQQHLIFAGKQLEDGRTLS 68
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R + L QL Q+
Sbjct: 69 DYNIQKESTLHLVL--CLRGSVIERSLHQLAQK 99
>gi|449686631|ref|XP_002166450.2| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Hydra
magnipapillata]
Length = 128
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEAADTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH+R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLRILAQKYNCDKMICR---KCYARLHIR 106
>gi|428163477|gb|EKX32546.1| Ubiquitin/60s ribosomal protein L40 fusion protein [Guillardia
theta CCMP2712]
Length = 128
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDMVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L ++ R ++ R R RL LR
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLLVLARKYRTDKKICR---RCYARLPLR 106
>gi|366984599|gb|AEX09204.1| ribosomal protein L40 [Pandinus cavimanus]
Length = 128
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R + P L L Q+
Sbjct: 58 DYNIQKESPLHLVLR--LRGGVIEPSLRILAQK 88
>gi|156101495|ref|XP_001616441.1| ubiquitin/ribosomal [Plasmodium vivax Sal-1]
gi|148805315|gb|EDL46714.1| ubiquitin/ribosomal, putative [Plasmodium vivax]
Length = 128
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+ + + +VK IE +G P QQ LI+ GK L+DV +
Sbjct: 1 MQIFVKTLTGKTITLDVEASETIRNVKSKIEDKEG---IPPDQQRLIYSGKQLEDVRFVA 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGAIEPSLAQLAQKYNCQKLICR---KCYARLHPR 106
>gi|345800149|ref|XP_003434657.1| PREDICTED: polyubiquitin-like [Canis lupus familiaris]
Length = 180
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKKSTLHLIL 71
>gi|5523985|gb|AAD44045.1|AF104028_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 357
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 225 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 281
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
+ + S L V+R GP + +
Sbjct: 282 GYNIQKES----TLHLVLRLRGGGPAVCK 306
>gi|371572867|gb|AEX37896.1| ubiquitin/TetR-Vp16 fusion protein [piggyBac transformation
vector OX3604]
Length = 414
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI G+ L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|40556034|ref|NP_955119.1| CNPV096 ubiquitin [Canarypox virus]
gi|40233859|gb|AAR83442.1| CNPV096 ubiquitin [Canarypox virus]
Length = 85
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D V +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTVENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|339262230|ref|XP_003367510.1| putative ubiquitin family protein [Trichinella spiralis]
gi|316959706|gb|EFV47730.1| putative ubiquitin family protein [Trichinella spiralis]
Length = 197
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 50 MQIFVKTLTGKTITLEVEPSDTIQNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 106
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL + + + R
Sbjct: 107 DYNIQKESTLHLVLR--LRGGIIEPSLRQLASKYNCEKMICR 146
>gi|326319441|ref|YP_004237113.1| hypothetical protein Acav_4667 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376277|gb|ADX48546.1| hypothetical protein with ubiquitin-like domain [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 287
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVK L G ++V+P D + DVK I+ +G P QQ LI GK L+D TL
Sbjct: 40 MQIFVKMLSGETLTLDVEPSDSIEDVKSKIQDQKG---IPPEQQRLIFAGKQLEDGHTLS 96
Query: 61 ENKVAENS 68
+ + ++S
Sbjct: 97 DYNIQKDS 104
>gi|264667445|gb|ACY71308.1| ribosomal protein L40 [Chrysomela tremula]
Length = 129
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|387592393|gb|EIJ87417.1| poly-histidine-tagged ubiquitin [Nematocida parisii ERTm3]
gi|387596877|gb|EIJ94497.1| poly-histidine-tagged ubiquitin [Nematocida parisii ERTm1]
Length = 79
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|62083369|gb|AAX62409.1| ribosomal protein L40 [Lysiphlebus testaceipes]
Length = 129
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGDIEPSLKLLAQKFNCDKMICR---KCYARLHPR 106
>gi|5523971|gb|AAD44038.1|AF104021_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 177
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 45 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 101
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQ 89
+ + + S L V+R GP + +
Sbjct: 102 DYNIQKES----TLHLVLRLRGGGPAVCK 126
>gi|399217583|emb|CCF74470.1| unnamed protein product [Babesia microti strain RI]
Length = 282
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L Q+ V R
Sbjct: 210 DYNIQKESTLHLVLR--LRGGVIDPSLALLAQKYNCNKMVCR 249
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|392332716|ref|XP_003752669.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392352643|ref|XP_001053626.2| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
Length = 90
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKKSTLHLVL 71
>gi|339232958|ref|XP_003381596.1| ubiquitin family protein [Trichinella spiralis]
gi|316979574|gb|EFV62350.1| ubiquitin family protein [Trichinella spiralis]
Length = 152
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D V +VK I+ +G P QQ LI GK L+D TL
Sbjct: 71 MQIFVKTLTGKTITLEVEPSDTVENVKGKIQDKEG---IPPDQQRLIFAGKQLEDSRTLS 127
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 128 DYNIQKESTLHLVL 141
>gi|327358639|gb|AEA51166.1| ubiquitin and ribosomal protein S27a precursor, partial [Oryzias
melastigma]
Length = 116
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 22 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 78
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 79 DYNIQKESTLHLVL 92
>gi|226484047|emb|CAX79692.1| ubiquitin C [Schistosoma japonicum]
Length = 229
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK LKD TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLKDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|11138788|gb|AAG31480.1| ubiquitin-like protein [Wuchereria bancrofti]
Length = 128
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FV TL G +EV+ D + +VK I QG P QQ LI GK L+D TL
Sbjct: 1 MQIFVNTLTGKTITLEVESSDTIENVKAKI---QGQRSIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL Q+ + ++ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCEKKICR 97
>gi|401416555|ref|XP_003872772.1| putative polyubiquitin [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322488997|emb|CBZ24246.1| putative polyubiquitin [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 128
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L++ TL
Sbjct: 1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEEGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L ++ + +V R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVMEPTLVALAKKYNWEKKVCR 97
>gi|510476|emb|CAA52419.1| ubiquitin unit IV [Artemia franciscana]
Length = 76
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ QG P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|219123892|ref|XP_002182250.1| ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217406211|gb|EEC46151.1| ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 128
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|15320680|ref|NP_203192.1| UBI [Epiphyas postvittana NPV]
gi|15213148|gb|AAK85587.1| UBI [Epiphyas postvittana NPV]
Length = 76
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G IE +P D V+ VK+ I +G P QQ LI+ GK L+D T+
Sbjct: 1 MQIFVKTLTGKSITIETEPGDTVAQVKQQIADKEG---VPVDQQRLIYAGKQLEDCKTMA 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHMVL 71
>gi|256087621|ref|XP_002579964.1| ubiquitin (ribosomal protein L40) [Schistosoma mansoni]
gi|3892189|gb|AAC78304.1| ubiquitin/ribosomal fusion protein [Schistosoma japonicum]
gi|226475088|emb|CAX71832.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475090|emb|CAX71833.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475092|emb|CAX71834.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475094|emb|CAX71835.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475096|emb|CAX71836.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477046|emb|CAX78176.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477048|emb|CAX78177.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477052|emb|CAX78179.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477054|emb|CAX78180.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477056|emb|CAX78181.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477058|emb|CAX78182.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477060|emb|CAX78183.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477064|emb|CAX78185.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477066|emb|CAX78186.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477068|emb|CAX78187.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477070|emb|CAX78188.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477072|emb|CAX78189.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477074|emb|CAX78190.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477076|emb|CAX78191.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477078|emb|CAX78192.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|238665464|emb|CAZ36203.1| ubiquitin (ribosomal protein L40), putative [Schistosoma mansoni]
Length = 128
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPADTIEAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L Q+ + + R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPTLKALAQKYNCEKMICR 97
>gi|339232978|ref|XP_003381606.1| ubiquitin family protein [Trichinella spiralis]
gi|316979561|gb|EFV62340.1| ubiquitin family protein [Trichinella spiralis]
Length = 315
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D V +VK I+ +G P QQ LI GK L+D TL
Sbjct: 143 MQIFVKTLTGKTITLEVEPSDTVENVKGKIQDKEG---IPPDQQRLIFAGKQLEDSRTLS 199
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 200 DYNIQKES 207
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 67 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 123
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 124 DYNIQKES 131
>gi|312380774|gb|EFR26677.1| hypothetical protein AND_07080 [Anopheles darlingi]
Length = 567
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 143 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 199
Query: 61 ENKVAENS--------------FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPR 106
+ + + S FV + K I +V P + ++ K+Q +P
Sbjct: 200 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPS--DTIENVKAKIQDKEGIPP 256
Query: 107 HNQRL 111
QRL
Sbjct: 257 DQQRL 261
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 219 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 275
Query: 61 ENKVAENSFVVVMLTKVI 78
+ + + S + ++L I
Sbjct: 276 DYNIQKESTLHLVLPGAI 293
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FV+ L G I+ +PE V VKK I+ + P +QQ +I GK L+D TLE
Sbjct: 77 MQIFVRMLTGKTIAIDTEPEATVESVKKQIDE---REEIPPNQQRMIFAGKQLEDGRTLE 133
Query: 61 ENKVAENS----FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRL 111
E + + + FV + K I +V P + ++ K+Q +P QRL
Sbjct: 134 EYSIIKATNMQIFVKTLTGKTITL-EVEPS--DTIENVKAKIQDKEGIPPDQQRL 185
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD 55
M++FVKTL G ++V P + V D+K IE +G D QQ +I GK L++
Sbjct: 1 MQIFVKTLTGKTITLDVVPTETVLDIKSKIEEREGID---PDQQRIIFAGKQLEN 52
>gi|197129054|gb|ACH45552.1| putative ubiquitin C variant 1 [Taeniopygia guttata]
Length = 77
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M +FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MHIFVKTLTGKTLSLEVEPTDTIENVKAKIQAKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESILHLVL 71
>gi|220897964|gb|ACL81256.1| ubiquitin [Plutella xylostella]
Length = 128
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R V P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESILHLVLR--LRGGIVEPSLRILAQKYNCDKMICR---KCYARLHPR 106
>gi|427782533|gb|JAA56718.1| Putative neural precursor cell [Rhipicephalus pulchellus]
Length = 79
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL G EI+++P DKV +K+ +E +G P +QQ LI+ GK + D T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPNDKVERIKERVEEKEG---IPPAQQRLIYSGKQMNDEKTAT 57
Query: 61 ENKVAENSFVVVML 74
E KV S + ++L
Sbjct: 58 EYKVQGGSVLHLVL 71
>gi|323456740|gb|EGB12606.1| hypothetical protein AURANDRAFT_17856, partial [Aureococcus
anophagefferens]
Length = 79
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G IE + DK+ DVK IE +G P QQ LI GK L TL+
Sbjct: 4 MQLFVKTLSGKTVSIECEESDKIEDVKAKIEEKEG---VPVDQQRLIFAGKQLDGQKTLQ 60
Query: 61 ENKVAENSFVVVML 74
E + E + + ++L
Sbjct: 61 EVGIDEGASLSMVL 74
>gi|403287887|ref|XP_003935154.1| PREDICTED: polyubiquitin-B-like isoform 2 [Saimiri boliviensis
boliviensis]
Length = 83
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPHDQQRLIFAGKQLEDGRTLP 63
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 64 DYNIQKESTLYLVL 77
>gi|321468462|gb|EFX79447.1| hypothetical protein DAPPUDRAFT_52566 [Daphnia pulex]
Length = 111
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|30387258|ref|NP_848337.1| ubiquitin-like protein [Choristoneura fumiferana MNPV]
gi|30270000|gb|AAP29816.1| ubiquitin-like protein [Choristoneura fumiferana MNPV]
Length = 94
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +E +P D V VK+ I +G P QQ LI+ GK L+D T+
Sbjct: 17 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEG---VPVDQQRLIYAGKQLEDAKTMA 73
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 74 DYNIQKESTLHMVL 87
>gi|208891|gb|AAA72503.1| beta-galactosidase/ubiquitin fusion protein, partial [synthetic
construct]
Length = 116
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|306440515|pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 96
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 58
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 59 DYNIQKESTLHLVL 72
>gi|392880568|gb|AFM89116.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FV+TL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVRTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|339245885|ref|XP_003374576.1| ubiquitin family protein [Trichinella spiralis]
gi|316972173|gb|EFV55861.1| ubiquitin family protein [Trichinella spiralis]
Length = 214
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 71 MQIFVKTLTGKTITLEVEPSDTIQNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 127
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL + + + R
Sbjct: 128 DYNIQKESTLHLVLR--LRGGIIEPSLRQLASKYNCEKMICR 167
>gi|158767|gb|AAA29004.1| ubiquitin, partial [Drosophila melanogaster]
gi|225321|prf||1212243F ubiquitin S6(1)
Length = 76
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGX---PPDQQRLIFAGKXLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|403287885|ref|XP_003935153.1| PREDICTED: polyubiquitin-B-like isoform 1 [Saimiri boliviensis
boliviensis]
gi|403287889|ref|XP_003935155.1| PREDICTED: polyubiquitin-B-like isoform 3 [Saimiri boliviensis
boliviensis]
Length = 77
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPHDQQRLIFAGKQLEDGRTLP 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLYLVL 71
>gi|327358507|gb|AEA51100.1| ubiquitin, partial [Oryzias melastigma]
Length = 169
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 22 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 78
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 79 DYNIQKESTLHLVL 92
>gi|53987035|gb|AAV27297.1| poly-histidine-tagged ubiquitin [Cloning vector pHUE]
Length = 130
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 77
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 78 DYNIQKESTLHLVL 91
>gi|11528469|gb|AAG37291.1| humanized L1/ubiqutin hybrid protein [synthetic construct]
Length = 575
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|392877386|gb|AFM87525.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTTENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|223646710|gb|ACN10113.1| Ubiquitin [Salmo salar]
gi|223672563|gb|ACN12463.1| Ubiquitin [Salmo salar]
Length = 128
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++F K L G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFGKALTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>gi|85719967|gb|ABC75552.1| ubiquitin and ribosomal protein S27a precursor [Ictalurus
punctatus]
Length = 114
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 67
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 68 DYNIQKESTLHLVL 81
>gi|346470233|gb|AEO34961.1| hypothetical protein [Amblyomma maculatum]
Length = 83
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL G EI+++P DKV +K+ +E +G P +QQ LI GK + D T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPAQQRLIFSGKQMNDDKTAA 57
Query: 61 ENKVAENSFVVVML 74
+ KV S + ++L
Sbjct: 58 DYKVTGGSVLHLVL 71
>gi|164510078|emb|CAJ32643.1| ubiquitin [Littorina littorea]
gi|164510090|emb|CAJ32649.1| ubiquitin [Rimicaris exoculata]
Length = 76
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLT 75
+ + + S + ++L+
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|158771|gb|AAA29006.1| ubiquitin, partial [Drosophila melanogaster]
gi|225323|prf||1212243H ubiquitin S7(1)
Length = 76
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKXLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|13021896|gb|AAK11574.1| humanized ubiquitin/L1 delta/H-2 Db CTL epitope hybrid protein
[synthetic construct]
Length = 558
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|441677168|ref|XP_003277840.2| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 1
[Nomascus leucogenys]
Length = 205
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G EV+P D +V I+ +G P QQ LI GK L+D TL
Sbjct: 80 MQIFVKTLMGKTITTEVEPSDITENVTAKIQDKEG---VPPDQQHLIFAGKQLEDGRTLS 136
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLH--- 117
+ + + S + ++L +R + P L QL Q+ + R + RLH R ++
Sbjct: 137 DYNIQKESTLHLVLH--LRGGIIEPSLRQLAQKYNCNKMICR---KCYARLHPRAVNCRK 191
Query: 118 QLWHRHNL 125
+ H +NL
Sbjct: 192 KCGHTNNL 199
>gi|392875698|gb|AFM86681.1| ribosomal protein L40-like isoform 1 [Callorhinchus milii]
Length = 128
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLF 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|348673804|gb|EGZ13623.1| hypothetical protein PHYSODRAFT_262785 [Phytophthora sojae]
Length = 115
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK+ I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + +
Sbjct: 58 DYNIQKGA 65
>gi|442761305|gb|JAA72811.1| Putative ubiquitin/40s ribosomal protein s27a fusion, partial
[Ixodes ricinus]
Length = 157
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 30 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 86
Query: 61 ENKVAEN-------------SFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRH 107
+ + +N F V LT +V P + ++ K+Q +P
Sbjct: 87 DYNIQKNPPSTWCCGSAVECRFFVKTLTGKTITLEVEPS--DTIENVKAKIQDKEGIPPD 144
Query: 108 NQRL 111
QRL
Sbjct: 145 QQRL 148
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK 51
+ FVKTL G +EV+P D + +VK I+ +G P QQ LI GK
Sbjct: 106 CRFFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGK 153
>gi|20070031|ref|NP_613235.1| v-ubiquitin [Mamestra configurata NPV-A]
gi|20043425|gb|AAM09260.1| v-ubiquitin [Mamestra configurata NPV-A]
gi|33331863|gb|AAQ11171.1| putative ubiquitin [Mamestra configurata NPV-A]
Length = 100
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D V +K+ I +G P QQ LI+ GK L+D +T+
Sbjct: 1 MQIFVKTLTGKTVTVEVEPTDTVEQLKQKITDKEG---IPPDQQRLIYAGKQLEDSSTMS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|320164491|gb|EFW41390.1| Nedd8-PA [Capsaspora owczarzaki ATCC 30864]
Length = 77
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL G EI+++P D+V +K+ +E +G P +QQ LI GK + D T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDRVDRIKERVEEKEG---IPPAQQRLIFGGKQMNDDKTAA 57
Query: 61 ENKVAENSFVVVML 74
E K+A S + ++L
Sbjct: 58 EYKIAGGSVLHLVL 71
>gi|157873328|ref|XP_001685176.1| ubiquitin-fusion protein [Leishmania major strain Friedlin]
gi|157873354|ref|XP_001685189.1| ubiquitin-fusion protein [Leishmania major strain Friedlin]
gi|339898906|ref|XP_003392716.1| ubiquitin-fusion protein [Leishmania infantum JPCM5]
gi|339898910|ref|XP_003392717.1| ubiquitin-fusion protein [Leishmania infantum JPCM5]
gi|398020239|ref|XP_003863283.1| ubiquitin-fusion protein [Leishmania donovani]
gi|401426450|ref|XP_003877709.1| ubiquitin-fusion protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|401426476|ref|XP_003877722.1| ubiquitin-fusion protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|302393719|sp|P69201.2|RL40_LEIMA RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=60S
ribosomal protein L40; AltName: Full=CEP52; Flags:
Precursor
gi|484476|pir||JN0790 ubiquitin/ribosomal protein CEP52 fusion protein - Leishmania major
gi|312488|emb|CAA51550.1| ubiquitin-fusion protein [Leishmania tarentolae]
gi|68128247|emb|CAJ08378.1| ubiquitin-fusion protein [Leishmania major strain Friedlin]
gi|68128260|emb|CAJ08391.1| ubiquitin-fusion protein [Leishmania major strain Friedlin]
gi|321398567|emb|CBZ08904.1| ubiquitin-fusion protein [Leishmania infantum JPCM5]
gi|321398569|emb|CBZ08905.1| ubiquitin-fusion protein [Leishmania infantum JPCM5]
gi|322493955|emb|CBZ29246.1| ubiquitin-fusion protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493968|emb|CBZ29259.1| ubiquitin-fusion protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322501515|emb|CBZ36594.1| ubiquitin-fusion protein [Leishmania donovani]
Length = 128
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L++ TL
Sbjct: 1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEEGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L ++ + +V R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVMEPTLVALAKKYNWEKKVCR 97
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL F IE + D V +K+ I D Y A LI GK+L+D TLE
Sbjct: 1 MQLQIKTLSNEKFAIECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLE 60
Query: 61 ENKVAENSFVVVM 73
+ +SF+VV+
Sbjct: 61 FYSITSDSFLVVV 73
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 29/136 (21%)
Query: 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 219
+ ++ + E ++++ DMG +DR ALRA++ + ERA EYL +G +P ++
Sbjct: 138 SFLSAESREKALRELTDMG---FDRAQAELALRASFYHVERAAEYLITG-----NIPNIS 189
Query: 220 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 279
SA G Q P+ ++G G G L L S
Sbjct: 190 EPSAANPEGG-----SGQTPSGSESSTG----------------GRRGGEDDLVELSQSP 228
Query: 280 QFQALRTMVQANPQIL 295
QFQALR ++Q NP L
Sbjct: 229 QFQALRQLIQQNPDQL 244
>gi|160552279|gb|ABX44845.1| ubiquinated putative 60S ribosomal protein RPL40 [Flustra foliacea]
Length = 128
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRMLAQKYNCDKMICR---KCYARLHPR 106
>gi|123316118|gb|ABM74399.1| ubiquitin [Portunus pelagicus]
Length = 154
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|429964160|gb|ELA46158.1| polyubiquitin [Vavraia culicis 'floridensis']
Length = 78
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D +S+VK I+ +G P QQ LI GK L+D +L
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTISNVKNKIKDKEG---IPPDQQRLIFAGKQLEDGRSLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|302393781|sp|P62976.2|UBIQP_CRIGR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin;
Contains: RecName: Full=Ubiquitin-related 1; Contains:
RecName: Full=Ubiquitin-related 2; Flags: Precursor
gi|940395|dbj|BAA09853.1| polyubiquitin [Cricetulus sp.]
Length = 658
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ QG P QQ LI GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
>gi|328352405|emb|CCA38804.1| Ubiquitin [Komagataella pastoris CBS 7435]
Length = 77
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL G +EV+P DK+ D+K +E +G P SQQ + GK L D TLE
Sbjct: 1 MEIKVKTLTGREIPVEVEPTDKIIDIKALMEEKEG---IPPSQQRFLFSGKQLSDDQTLE 57
Query: 61 ENKVAENSFVVVMLT 75
K+ S + ++LT
Sbjct: 58 FYKIGPGSQLHLVLT 72
>gi|510473|emb|CAA52416.1| polyubiquitin [Artemia franciscana]
Length = 697
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ QG P QQ LI GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
>gi|395508039|ref|XP_003758323.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Sarcophilus
harrisii]
Length = 228
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 73 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 129
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 130 DYNIQKESTLHLVL 143
>gi|427781391|gb|JAA56147.1| Putative ubiquitin/40s ribosomal protein s27a fusion
[Rhipicephalus pulchellus]
Length = 124
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|9629963|ref|NP_046181.1| ubiquitin-like protein [Orgyia pseudotsugata MNPV]
gi|464989|sp|Q05120.1|UBIL_NPVOP RecName: Full=Ubiquitin-like protein; Flags: Precursor
gi|7439566|pir||T10294 ubiquitin-like protein - Orgyia pseudotsugata nuclear
polyhedrosis virus
gi|222221|dbj|BAA02639.1| ubiquitin [Orgyia pseudotsugata single capsid
nuclopolyhedrovirus]
gi|1911271|gb|AAC59024.1| ubiquitin-like protein [Orgyia pseudotsugata MNPV]
Length = 93
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +E +P D V VK+ I +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEG---VPVDQQRLIYAGKQLEDAQTLA 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHMVL 71
>gi|9634344|ref|NP_037883.1| ORF123 v-ubiquitin [Spodoptera exigua MNPV]
gi|6960582|gb|AAF33652.1| ORF123 v-ubiquitin [Spodoptera exigua MNPV]
Length = 80
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D V VK+ I +G P QQ LI+ GK L+D T+
Sbjct: 1 MQIFVKTLTGKTVTVEVESTDTVEQVKQKITDKEG---IPPDQQRLIYAGKQLEDTRTMS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTIHLVL 71
>gi|119624910|gb|EAX04505.1| ubiquitin B, isoform CRA_d [Homo sapiens]
Length = 116
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|356927786|gb|AET42576.1| polyubiquitin [Emiliania huxleyi virus 202]
Length = 80
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESNIHLVL 71
>gi|195190296|ref|XP_002029499.1| GL14086 [Drosophila persimilis]
gi|194103217|gb|EDW25260.1| GL14086 [Drosophila persimilis]
Length = 79
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|67191208|ref|NP_066289.2| polyubiquitin-C [Homo sapiens]
Length = 685
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P+ QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPSDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENS--------------FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPR 106
+ + + S FV + K I +V P + ++ K+Q +P
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPS--DTIENVKAKIQDKEGIPS 190
Query: 107 HNQRL 111
QRL
Sbjct: 191 DQQRL 195
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
>gi|69608587|emb|CAJ01880.1| ubiquitin/ribosomal protein S27Ae fusion protein [Micromalthus
debilis]
Length = 156
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ V + S + ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|283807117|pdb|3JVZ|X Chain X, E2~ubiquitin-Hect
gi|283807118|pdb|3JVZ|Y Chain Y, E2~ubiquitin-Hect
gi|283807123|pdb|3JW0|X Chain X, E2~ubiquitin-Hect
gi|283807124|pdb|3JW0|Y Chain Y, E2~ubiquitin-Hect
gi|400977356|pdb|4AUQ|C Chain C, Structure Of Birc7-Ubch5b-Ub Complex.
gi|400977359|pdb|4AUQ|F Chain F, Structure Of Birc7-Ubch5b-Ub Complex
Length = 81
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 62
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 63 DYNIQKESTLHLVL 76
>gi|109810215|gb|ABG46422.1| ubiquitin/ribosomal protein S27 fusion protein [Pectinaria
gouldii]
Length = 157
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|163915892|gb|AAI57792.1| LOC100135402 protein [Xenopus (Silurana) tropicalis]
Length = 85
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|302393788|sp|P23398.2|UBIQP_STRPU RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin;
Flags: Precursor
gi|161616|gb|AAA30082.1| ubiquitin, partial [Strongylocentrotus purpuratus]
Length = 133
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 57 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 113
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 114 DYNIQKESTLHLVL 127
>gi|336372565|gb|EGO00904.1| hypothetical protein SERLA73DRAFT_178893 [Serpula lacrymans var.
lacrymans S7.3]
Length = 312
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 ENKVAENS-----FVVVMLTK 76
+ + + S FV V++TK
Sbjct: 286 DYNIQKESTLHLVFVCVVVTK 306
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 134 DYNIQKES 141
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 210 DYNIQKES 217
>gi|118483418|gb|ABK93609.1| unknown [Populus trichocarpa]
Length = 120
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L ++ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLMALARKYNQEKMICR---KCYARLHPR 106
>gi|397522294|ref|XP_003831209.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Pan paniscus]
gi|397522296|ref|XP_003831210.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 2
[Pan paniscus]
gi|397522298|ref|XP_003831211.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 3
[Pan paniscus]
gi|119624908|gb|EAX04503.1| ubiquitin B, isoform CRA_b [Homo sapiens]
gi|197129066|gb|ACH45564.1| putative ubiquitin C variant 10 [Taeniopygia guttata]
gi|431914472|gb|ELK15722.1| Ubiquitin [Pteropus alecto]
gi|440894339|gb|ELR46815.1| Polyubiquitin-B [Bos grunniens mutus]
Length = 77
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|339233028|ref|XP_003381631.1| ubiquitin family protein [Trichinella spiralis]
gi|316979531|gb|EFV62315.1| ubiquitin family protein [Trichinella spiralis]
Length = 203
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 123 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 179
Query: 61 ENKVAENS--FVVVMLTKVIRF 80
+ + + S +V+ L V +F
Sbjct: 180 DYNIQKESTLHLVLRLRGVCKF 201
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+FVKTL G +EV+P D + +VK I+ +G P QQ LI G K++T L++
Sbjct: 26 IFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGN--KEITILDKE 80
Query: 63 KV 64
+
Sbjct: 81 GI 82
>gi|288812763|gb|ADC54275.1| putative ubiquitin [Hydroides elegans]
Length = 90
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQ 93
+ + + S + ++L +R + P L L Q+
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRMLAQK 88
>gi|86370988|gb|ABC94632.1| ubiquitin C [Ictalurus punctatus]
Length = 192
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 116 MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 172
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 173 DYNIQKESTLHLVL 186
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 40 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 96
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 97 DYNIQKESTLHLVL 110
>gi|397592983|gb|EJK55830.1| hypothetical protein THAOC_24391 [Thalassiosira oceanica]
Length = 184
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M +FVKTL G ++V+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 57 MAIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 113
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R P L L ++ + Q+ R
Sbjct: 114 DYNIQKESTLHLVLR--LRGGVYDPSLALLAKKFNCEKQICR 153
>gi|388857763|emb|CCF48657.1| probable polyubiquitin [Ustilago hordei]
Length = 228
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|354683503|gb|AER34936.1| ubiquitin [Litopenaeus vannamei]
Length = 70
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P+ QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPSDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|209732614|gb|ACI67176.1| NEDD8 precursor [Salmo salar]
Length = 88
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL G EI+++P DKV +K+ +E +G P QQ LI+ GK + D T
Sbjct: 1 MPIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMDDEKTAA 57
Query: 61 ENKVAENSFVVVML 74
+ K+ S + ++L
Sbjct: 58 DYKIQGGSVLHLVL 71
>gi|198437437|ref|XP_002130180.1| PREDICTED: similar to ribosomal protein CEP52 isoform 1 [Ciona
intestinalis]
Length = 128
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK+ I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDMIDNVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLRILAQKYNCDKMICR---KCYARLHSR 106
>gi|281413215|gb|ADA69136.1| ubiquitin [Chilo suppressalis]
Length = 76
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLT 75
+ + + S + ++L+
Sbjct: 58 DYDIQKESTLHLVLS 72
>gi|226484025|emb|CAX79681.1| ubiquitin C [Schistosoma japonicum]
Length = 229
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G+ P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGT---PPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|110671414|gb|ABG81958.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Diaphorina citri]
Length = 156
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|79677339|emb|CAI77901.1| polyubiquitine protein [Collozoum inerme]
Length = 112
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|354483686|ref|XP_003504023.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Cricetulus
griseus]
Length = 156
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|296238592|ref|XP_002764220.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like, partial
[Callithrix jacchus]
Length = 98
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|124784704|gb|ABN14989.1| polyubiquitin [Taenia asiatica]
Length = 200
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 43 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 99
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 100 DYNIQKESTLHLVL 113
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 119 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 175
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 176 DYNIQKESTLHLVL 189
>gi|452819514|gb|EME26571.1| ubiquitin [Galdieria sulphuraria]
Length = 184
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|323454622|gb|EGB10492.1| hypothetical protein AURANDRAFT_23768 [Aureococcus
anophagefferens]
Length = 217
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK+ I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|197107121|pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin
gi|270346285|pdb|2KJH|B Chain B, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
gi|377656643|pdb|4DHJ|D Chain D, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656651|pdb|4DHJ|H Chain H, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656655|pdb|4DHZ|E Chain E, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 76
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|166952333|gb|ABZ04249.1| ribosomal protein rpl40 [Lineus viridis]
Length = 128
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVIEPSLRLLAQKYNCEKMICR---KCYARLHPR 106
>gi|432920202|ref|XP_004079887.1| PREDICTED: NEDD8-like [Oryzias latipes]
Length = 89
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL G EI+++P DKV +K+ +E +G P QQ LI+ GK + D T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 ENKVAENSF--VVVMLTKVIRFHQVG 84
+ K+ S +V+ L FH+ G
Sbjct: 58 DYKIQGGSVLHLVLALRGGCVFHEPG 83
>gi|9631359|ref|NP_048215.1| ORF MSV144 putative ubiquitin, similar to Neurospora crassa
GB:U01220 [Melanoplus sanguinipes entomopoxvirus]
gi|4049712|gb|AAC97672.1| ORF MSV144 putative ubiquitin, similar to Neurospora crassa
GB:U01220 [Melanoplus sanguinipes entomopoxvirus]
Length = 80
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++F+KTL G IE++ D +S++K+ I+ +G P QQ LI GK L+D TLE
Sbjct: 1 MQIFIKTLTGKTITIEIEANDTISNLKQKIQDKEG---IPPDQQRLIFAGKQLEDSRTLE 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|339232996|ref|XP_003381615.1| ubiquitin family protein [Trichinella spiralis]
gi|316979549|gb|EFV62331.1| ubiquitin family protein [Trichinella spiralis]
Length = 189
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 75 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 131
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 132 DYNIQKESTLHLVL 145
>gi|195164961|ref|XP_002023314.1| GL20619 [Drosophila persimilis]
gi|194105419|gb|EDW27462.1| GL20619 [Drosophila persimilis]
Length = 231
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 154 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 210
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 211 DYNIQKESTLHLVL 224
>gi|8101594|gb|AAF72586.1|AF216301_3 GP37 protein [Spodoptera litura NPV]
Length = 332
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D V VK+ I +G P QQ LI GK L+D T+
Sbjct: 1 MQIFVKTLTGKTITVDVEPSDSVETVKQRIADKEGV---PPDQQRLIFAGKQLEDSMTMS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|29425820|gb|AAO73559.1| polyubiquitin [Anas platyrhynchos]
gi|29425822|gb|AAO73560.1| polyubiquitin [Anas platyrhynchos]
Length = 115
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 37 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 93
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 94 DYNIQKESTLHLVL 107
>gi|72006620|ref|XP_784247.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like
[Strongylocentrotus purpuratus]
Length = 156
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|321469467|gb|EFX80447.1| hypothetical protein DAPPUDRAFT_243700 [Daphnia pulex]
Length = 764
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 ENKV-AENSFVVVMLTKVIRFH 81
+ + E++ +V+ + +R++
Sbjct: 742 DYNIQKESTLHLVLRLRGVRYN 763
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 666 DYNIQKESTLHLVL 679
>gi|296235576|ref|XP_002762957.1| PREDICTED: NEDD8-like [Callithrix jacchus]
Length = 114
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTL G +I+++P DKV +K+ +E QG P QQ LI+ GK + D T + K+
Sbjct: 38 VKTLTGKEIKIDIEPTDKVERIKERVEEKQG---IPPQQQRLIYSGKQMNDEKTTADYKI 94
Query: 65 AENSFVVVML 74
S + +ML
Sbjct: 95 LGGSVLHLML 104
>gi|159112981|ref|XP_001706718.1| Ubiquitin [Giardia lamblia ATCC 50803]
gi|157434817|gb|EDO79044.1| Ubiquitin [Giardia lamblia ATCC 50803]
Length = 82
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D ++++K I+ +G P QQ LI GK L+D TL+
Sbjct: 6 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQDKEG---IPPDQQRLIFSGKQLEDNRTLQ 62
Query: 61 ENKVAENSFVVVML 74
+ + +++ + ++L
Sbjct: 63 DYSIQKDATLHLVL 76
>gi|164510086|emb|CAJ32647.1| ubiquitin [Chorocaris chacei]
Length = 76
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLT 75
+ + + S + ++L+
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|302393716|sp|P46575.2|RL40_EIMBO RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName:
Full=Ubiquitin A-52 residue ribosomal protein fusion
product 1; Contains: RecName: Full=Ubiquitin; Contains:
RecName: Full=60S ribosomal protein L40; AltName:
Full=CEP52; AltName: Full=CEP53; Flags: Precursor
Length = 129
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|29612581|gb|AAH49478.1| Zgc:66168 protein, partial [Danio rerio]
Length = 172
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 17 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 73
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 74 DYNIQKESTLHLVL 87
>gi|72172080|gb|AAZ66786.1| polyubiquitin [Ictalurus punctatus]
Length = 85
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|208568|gb|AAA72701.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESCLHLVL 71
>gi|66361226|pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
gi|66361228|pdb|1YX6|B Chain B, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 98
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|225707542|gb|ACO09617.1| NEDD8 precursor [Osmerus mordax]
Length = 88
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL G EI+++P DKV +K+ +E +G P QQ LI+ GK + D T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 ENKVAENSFVVVML 74
+ K+ S + ++L
Sbjct: 58 DYKIQGGSVLHLVL 71
>gi|223646258|gb|ACN09887.1| Ubiquitin [Salmo salar]
gi|223672105|gb|ACN12234.1| Ubiquitin [Salmo salar]
Length = 191
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 171
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 172 DYNIQKES 179
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 7 TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE 66
+L G +EV+P D + +VK I+ +G P QQ LI GK L+D TL + + +
Sbjct: 45 SLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQK 101
Query: 67 NS 68
S
Sbjct: 102 ES 103
>gi|242024842|ref|XP_002432835.1| ubiquitin, putative [Pediculus humanus corporis]
gi|212518344|gb|EEB20097.1| ubiquitin, putative [Pediculus humanus corporis]
Length = 128
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R V P L L Q+ + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIVEPTLRILAQKYNCEKMICR---KCYARLHPR 106
>gi|10121776|gb|AAG13367.1| polyprotein [bovine viral diarrhea virus type 2]
Length = 636
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 355 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLILAGKQLEDGRTLS 411
Query: 61 ENKVAENS 68
K+ + S
Sbjct: 412 AYKIQKES 419
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P Q+ LI +D TL
Sbjct: 431 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPGQKRLIFPANKREDARTLS 487
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLF-------QLHQQIRPKLQV-LRLLPR 106
+ + + S + + L R GP + + H I KL ++PR
Sbjct: 488 DYNIQKESTLHLFL----RLRGGGPTVCKKVANREKCHVNIMDKLTAFFGIMPR 537
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 53/245 (21%)
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ--------TAVPPVARASAGGQAGNPP 231
G DR + ALRAA+ N ERAVEYL+ GIP +A+ A A
Sbjct: 178 GFEDRNQIALALRAAFMNVERAVEYLFEGIPPHLVEELTPFSALAAPAAAPGASNPSASS 237
Query: 232 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 291
A +PAP P S A + L QF +R + N
Sbjct: 238 AAAAVPASDSPAPAVAP----------------STAESEMRAALSRIPQFDEIRILYNQN 281
Query: 292 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP----------------------VE 329
L ++Q++ ++P + I+ FL ++ E +
Sbjct: 282 TDTLPVVMQQIALRHPAVYEQIERDPEVFLSIMGESGQPGSASAPAGPAAPSTAQAVVGD 341
Query: 330 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMG---FDRALVLEVFFACNKNEELAAN 386
E + + QL S + +T E+R A+++L +G +D + V+ A +N+E+AA+
Sbjct: 342 AEESSFMNQLQSGL----ELTAEDRTAVQQLVELGGGMWDEQSAVLVYLATQRNQEVAAS 397
Query: 387 YLLDH 391
L +H
Sbjct: 398 VLFEH 402
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVV 72
+ V +N +V+
Sbjct: 56 DAGVKDNDSLVL 67
>gi|260766535|gb|ACX50289.1| ubiquitin [Scylla paramamosain]
Length = 154
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|224503947|gb|ACN53545.1| polyubiquitin-like protein [Piriformospora indica]
Length = 229
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M +FVKTL G +EV+ D + DVK NI+ +G P QQ LI GK L+D TL
Sbjct: 1 MHIFVKTLTGKTITLEVESSDTIDDVKTNIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYDIQKESTLHLVL 71
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++F+KTL G +EV+ D + DVK I+ +G P QQ I GK L+D TL
Sbjct: 77 MQIFLKTLTGKTITLEVESSDTIDDVKTKIQDKEG---IPPDQQRWIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|169247557|gb|ACA51615.1| ubiquitin [Monochamus alternatus]
Length = 76
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLT 75
+ + + S + ++L+
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|441628709|ref|XP_003275965.2| PREDICTED: polyubiquitin-C-like [Nomascus leucogenys]
Length = 181
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 42 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 98
Query: 61 ENKVAENS 68
+ + + +
Sbjct: 99 DYNIQKET 106
>gi|293353099|ref|XP_002728156.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
gi|392333018|ref|XP_003752767.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
Length = 77
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I Q + P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKI---QDKESIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + E S + ++L
Sbjct: 58 DYSIQEESTLHLVL 71
>gi|225705166|gb|ACO08429.1| Ubiquitin [Oncorhynchus mykiss]
Length = 156
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPGQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLRLVL 71
>gi|402232869|gb|AFQ36934.1| ribosomal protein S27-3, partial [Salvelinus fontinalis]
Length = 124
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|300422605|dbj|BAJ10868.1| ubiquitin C [Callithrix jacchus]
Length = 99
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|240952274|ref|XP_002399366.1| 40S ribosomal protein S27A, putative [Ixodes scapularis]
gi|215490569|gb|EEC00212.1| 40S ribosomal protein S27A, putative [Ixodes scapularis]
Length = 169
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 14 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 70
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 71 DYNIQKES 78
>gi|148688761|gb|EDL20708.1| mCG1048340 [Mus musculus]
Length = 91
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|19073994|ref|NP_584600.1| ubiquitin [Encephalitozoon cuniculi GB-M1]
gi|303388387|ref|XP_003072428.1| ubiquitin [Encephalitozoon intestinalis ATCC 50506]
gi|51702116|sp|Q8SWD4.1|UBIQ_ENCCU RecName: Full=Ubiquitin; Flags: Precursor
gi|19068636|emb|CAD25104.1| UBIQUITIN [Encephalitozoon cuniculi GB-M1]
gi|303301568|gb|ADM11068.1| ubiquitin [Encephalitozoon intestinalis ATCC 50506]
gi|449329368|gb|AGE95641.1| ubiquitin [Encephalitozoon cuniculi]
Length = 77
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|94378076|ref|XP_001002242.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Mus
musculus]
Length = 156
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|91087351|ref|XP_975614.1| PREDICTED: similar to CG15771 CG15771-PA [Tribolium castaneum]
Length = 309
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
K V TL G +I+V+P DK+ +K+ +E +G P QQ LIHQGK LKD T+E
Sbjct: 69 KYAVVTLTGEEKQIDVEPTDKIITIKEKLEEREG---IPPEQQRLIHQGKQLKDDRTIES 125
Query: 62 NK 63
K
Sbjct: 126 YK 127
>gi|310772348|dbj|BAJ23937.1| ribosomal protein S27a [Pseudocentrotus depressus]
Length = 149
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|294860858|gb|ADF45325.1| ubiquitin/ribosomal S27 fusion protein 1 [Eriocheir sinensis]
gi|296785438|gb|ADH43625.1| ubiquitin a [Eriocheir sinensis]
gi|320382385|gb|ADW27184.1| ubiquitin/ribosomal S27 fusion protein [Eriocheir sinensis]
Length = 154
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|225704224|gb|ACO07958.1| Ubiquitin [Oncorhynchus mykiss]
Length = 104
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|15617504|ref|NP_258300.1| ubiquitin GP37 fusion protein [Spodoptera litura NPV]
gi|15553240|gb|AAL01718.1|AF325155_30 ubiquitin GP37 fusion protein [Spodoptera litura NPV]
Length = 351
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D V VK+ I +G P QQ LI GK L+D T+
Sbjct: 20 MQIFVKTLTGKTITVDVEPSDSVETVKQRIADKEGV---PPDQQRLIFAGKQLEDSMTMS 76
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 77 DYNIQKES 84
>gi|449017230|dbj|BAM80632.1| ubiquitin with short C-terminal extension [Cyanidioschyzon
merolae strain 10D]
Length = 134
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|339262860|ref|XP_003367195.1| putative ubiquitin family protein [Trichinella spiralis]
gi|316963854|gb|EFV49251.1| putative ubiquitin family protein [Trichinella spiralis]
Length = 110
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 26 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 82
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 83 DYNIQKESTLHLVL 96
>gi|119620514|gb|EAX00109.1| ribosomal protein S27a, isoform CRA_d [Homo sapiens]
Length = 87
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKV 64
+ +
Sbjct: 58 DYNI 61
>gi|110589533|gb|ABG77272.1| ubiquitin-53aa extension protein [Pieris rapae]
Length = 129
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGT---PPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|342326368|gb|AEL23099.1| ubiquitin [Cherax quadricarinatus]
Length = 99
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 23 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 79
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 80 DYNIQKESTLHLVL 93
>gi|164510092|emb|CAJ32650.1| ubiquitin [Mytilus edulis]
Length = 228
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D +TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLIFAGKQLEDGSTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D +TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLIFAGKQLEDGSTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ L+ GK L+D +TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQSLMFAGKQLEDGSTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
>gi|124001037|ref|XP_001276939.1| Ubiquitin [Trichomonas vaginalis G3]
gi|121918925|gb|EAY23691.1| Ubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ DK+ DVK I+ +G P QQ LI GK L+D LE
Sbjct: 1 MQLFVKTLTGKRITLEVESADKIEDVKAKIQDREG---IPRDQQRLIFHGKELEDGNRLE 57
Query: 61 ENKVAENS 68
+ + +++
Sbjct: 58 DYSIPKDA 65
>gi|164510076|emb|CAJ32642.1| ubiquitin [Littorina littorea]
Length = 76
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|82792659|gb|ABB91375.1| ubiquitin-53aa extension protein [Helicoverpa assulta]
Length = 129
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGT---PPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|325191951|emb|CCA26421.1| ubiquitinribosomal fusion protein putative [Albugo laibachii Nc14]
Length = 128
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRL 103
+ + + S + ++L +R + P L L ++ + ++ R+
Sbjct: 58 DYNIQKESTLHLVLR--LRGGAIEPTLAALAKKKNTEKKICRI 98
>gi|229368168|gb|ACQ59064.1| Ubiquitin [Anoplopoma fimbria]
Length = 156
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|208435644|pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
gi|208435648|pdb|3DVN|X Chain X, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
gi|208435652|pdb|3DVN|U Chain U, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 80
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 60
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|61741081|gb|AAX54508.1| ubiquitin/ribosomal 27a [Marsupenaeus japonicus]
Length = 141
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|342906196|gb|AEL79381.1| ubiquitin [Rhodnius prolixus]
Length = 81
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 61
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|444791|prf||1908225A ubiquitin
Length = 305
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS--------------FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPR 106
+ + + S FV + K I +V P + ++ K+Q +P
Sbjct: 58 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPS--DTIENVKAKIQDKECIPP 114
Query: 107 HNQRL 111
QRL
Sbjct: 115 DQQRL 119
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
>gi|391345397|ref|XP_003746973.1| PREDICTED: NEDD8-like [Metaseiulus occidentalis]
Length = 83
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL G EI+++P DKV +K+ +E +G P +QQ LI GK + D T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPAQQRLIFSGKQMNDDKTAS 57
Query: 61 ENKVAENSFVVVML 74
+ KV S + ++L
Sbjct: 58 DYKVTGGSVLHLVL 71
>gi|209732720|gb|ACI67229.1| Ubiquitin [Salmo salar]
gi|303662772|gb|ADM16083.1| Ubiquitin [Salmo salar]
Length = 80
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKV 64
+ +
Sbjct: 58 DYNI 61
>gi|121543853|gb|ABM55591.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Maconellicoccus hirsutus]
Length = 156
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|56199434|gb|AAV84206.1| unknown [Culicoides sonorensis]
Length = 162
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 63
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 64 DYNIQKESTLHLVL 77
>gi|1050930|emb|CAA63349.1| polyubiquitin [Rattus norvegicus]
Length = 100
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|268306350|gb|ACY95296.1| ribosomal protein L40 [Manduca sexta]
Length = 130
Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L + + + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGTIEPSLRNLAMKYNCEKMICR---KCYARLHPR 106
>gi|69608578|emb|CAJ01878.1| ubquitin/ribosomal protein S27Ae fusion protein [Curculio
glandium]
Length = 138
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS 68
+ + + S
Sbjct: 58 DYNIQKES 65
>gi|403289148|ref|XP_003935728.1| PREDICTED: polyubiquitin-B-like [Saimiri boliviensis boliviensis]
Length = 165
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 89 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 145
Query: 61 ENKVAENSFVVVML 74
+ + S + ++L
Sbjct: 146 XYNIQKESTLHLVL 159
>gi|397614491|gb|EJK62831.1| hypothetical protein THAOC_16543 [Thalassiosira oceanica]
Length = 240
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 164 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 220
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 221 DYNIQKESTLHLVL 234
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++FVKTL G ++V+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 88 LQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 144
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 145 DYNIQKESTLHLVL 158
>gi|119624911|gb|EAX04506.1| ubiquitin B, isoform CRA_e [Homo sapiens]
Length = 152
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|90075190|dbj|BAE87275.1| unnamed protein product [Macaca fascicularis]
Length = 157
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 20/125 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENS--------------FVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPR 106
+ + + S FV + K I +V P + + ++ K+Q +P
Sbjct: 58 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL-EVEPS--DIIENVKAKIQDKEGIPP 114
Query: 107 HNQRL 111
QRL
Sbjct: 115 DQQRL 119
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,019,867,780
Number of Sequences: 23463169
Number of extensions: 253254187
Number of successful extensions: 1325222
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 3007
Number of HSP's that attempted gapping in prelim test: 1316283
Number of HSP's gapped (non-prelim): 9306
length of query: 397
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 252
effective length of database: 8,957,035,862
effective search space: 2257173037224
effective search space used: 2257173037224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)