BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015999
(397 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana
GN=RAD23-3 PE=2 SV=2
Length = 419
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/256 (82%), Positives = 227/256 (88%), Gaps = 8/256 (3%)
Query: 147 LHSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206
+ S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY
Sbjct: 167 VGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLY 226
Query: 207 SGIPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 265
+GIPEQ VPPVAR A GQ NPPAQTQ QPAA AP SGPNANPLDLFPQGLPN+G
Sbjct: 227 TGIPEQAEVPPVARPPASAGQPANPPAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGG 283
Query: 266 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325
N GAGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLIN
Sbjct: 284 NPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLIN 343
Query: 326 EPVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 381
EPVEGG GN+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNE
Sbjct: 344 EPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNE 403
Query: 382 ELAANYLLDHMHEFED 397
ELAANYLLDHMHEFE+
Sbjct: 404 ELAANYLLDHMHEFEE 419
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 72/76 (94%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKVAENSF+V+M+ K
Sbjct: 61 ENKVAENSFIVIMMNK 76
>sp|Q40742|RAD23_ORYSJ Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica
GN=RAD23 PE=1 SV=2
Length = 392
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/400 (56%), Positives = 275/400 (68%), Gaps = 15/400 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQLW 120
ENKV ENSF+V+ML + P + P Q + P + +
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPV- 119
Query: 121 HRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 180
+ + + S +D YGQA SNLVAGSNLEAT+Q IL+MGGG
Sbjct: 120 --------TVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGG 171
Query: 181 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPA 240
WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +QA QPA
Sbjct: 172 IWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQASQATQPA 228
Query: 241 APAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQILQPM 298
AP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQANPQILQP+
Sbjct: 229 APSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPL 288
Query: 299 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVTPEEREAI 357
LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VTPEE EAI
Sbjct: 289 LQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAI 348
Query: 358 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 349 LRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
>sp|Q84L32|RD23B_ARATH Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana
GN=RAD23-2 PE=2 SV=2
Length = 368
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/400 (52%), Positives = 257/400 (64%), Gaps = 35/400 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLL-PRHNQRLHLRLLHQL 119
ENKV E F+VVML+K GP Q + L P Q + + +
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNST 120
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQAASNLVAGSNLEATVQQILDMGG 179
+ Q + SD YGQAAS LV+GS++E VQQI++MGG
Sbjct: 121 PVQE----------------------QPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGG 158
Query: 180 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 239
GSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G ++
Sbjct: 159 GSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS----------GREL 208
Query: 240 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 299
AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQILQPML
Sbjct: 209 TAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPML 268
Query: 300 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEEREAI 357
QELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPEE+E+I
Sbjct: 269 QELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESI 328
Query: 358 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
ERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 329 ERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
>sp|Q84L30|RD23D_ARATH Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana
GN=RAD23-4 PE=2 SV=2
Length = 378
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/247 (79%), Positives = 213/247 (86%), Gaps = 1/247 (0%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP
Sbjct: 132 TDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIP 191
Query: 211 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 270
Q +PPVA+A A G+ P Q A A T GPNANPL+LFPQG+P + AGAG
Sbjct: 192 AQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAG 251
Query: 271 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330
LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE
Sbjct: 252 NLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE- 310
Query: 331 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 390
GE NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLD
Sbjct: 311 GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLD 370
Query: 391 HMHEFED 397
HMHEFED
Sbjct: 371 HMHEFED 377
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%), Gaps = 1/77 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKV 77
EN V ENSF+V+ML+K
Sbjct: 60 ENNVVENSFIVIMLSKT 76
>sp|Q84L33|RD23A_ARATH Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana
GN=RAD23-1 PE=2 SV=3
Length = 371
Score = 314 bits (804), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 159/252 (63%), Positives = 193/252 (76%), Gaps = 17/252 (6%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
+D YGQAAS LV+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 132 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIP 191
Query: 211 E--QTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 267
+ + AVP P A+ + G A P APA + GPN++PLDLFPQ +
Sbjct: 192 QTAEVAVPVPEAQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSG 239
Query: 268 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 327
GTL+FLRN+ QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP
Sbjct: 240 DLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEP 299
Query: 328 VEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 385
EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAA
Sbjct: 300 YEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAA 359
Query: 386 NYLLDHMHEFED 397
NYLL++ +FED
Sbjct: 360 NYLLENSGDFED 371
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 57/76 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E F+VVML+K
Sbjct: 61 ENKVTEEGFLVVMLSK 76
>sp|P54728|RD23B_MOUSE UV excision repair protein RAD23 homolog B OS=Mus musculus
GN=Rad23b PE=1 SV=2
Length = 416
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 143/261 (54%), Gaps = 43/261 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 229 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPV-EGGE---------------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 368
NEPV E G G + + S + VTP+E+EAIERL+A+GF
Sbjct: 329 NEPVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEG 388
Query: 369 LVLEVFFACNKNEELAANYLL 389
LV++ +FAC KNE LAAN+LL
Sbjct: 389 LVIQAYFACEKNENLAANFLL 409
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>sp|Q4KMA2|RD23B_RAT UV excision repair protein RAD23 homolog B OS=Rattus norvegicus
GN=Rad23b PE=1 SV=1
Length = 415
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 142/260 (54%), Gaps = 42/260 (16%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P +A + G +P A A
Sbjct: 229 IPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 369
NEPV+ G + + S + VTP+E+EAIERL+A+GF L
Sbjct: 329 NEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGL 388
Query: 370 VLEVFFACNKNEELAANYLL 389
V++ +FAC KNE LAAN+LL
Sbjct: 389 VIQAYFACEKNENLAANFLL 408
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>sp|Q29RK4|RD23B_BOVIN UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B
PE=2 SV=1
Length = 408
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 140/252 (55%), Gaps = 37/252 (14%)
Query: 151 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 211 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 266
Q V P AS G + A +SG G P
Sbjct: 231 GDRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----- 274
Query: 267 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 326
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 275 -----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 329
Query: 327 PVEGGEGNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFAC 377
PV+ G G + A + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 330 PVQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 389
Query: 378 NKNEELAANYLL 389
KNE LAAN+LL
Sbjct: 390 EKNENLAANFLL 401
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B OS=Homo sapiens
GN=RAD23B PE=1 SV=1
Length = 409
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 36/254 (14%)
Query: 149 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208
S S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 172 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 228
Query: 209 IP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 264
IP Q V P AS G AP S A
Sbjct: 229 IPGDRESQAVVDPPQAASTG------------------APQSSAVAAAAAT--TTATTTT 268
Query: 265 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 324
+++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 325 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 375
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 376 ACNKNEELAANYLL 389
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTK 76
E K+ E +FVVVM+TK
Sbjct: 61 EYKIDEKNFVVVMVTK 76
>sp|O74803|RHP23_SCHPO UV excision repair protein rhp23 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rhp23 PE=1 SV=1
Length = 368
Score = 151 bits (381), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 197/411 (47%), Gaps = 59/411 (14%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M + K L+ F I +V + K+S++K+ I+T Q Y +Q LI+ G++L D
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILAD---- 53
Query: 60 EENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLRLLHQL 119
K + + + Q F + RPK P+ +
Sbjct: 54 ---------------DKTVGEYNIKEQDFIVCMVSRPKTSTS--TPKSAASPAPNPPASV 96
Query: 120 WHRHNLSLNLLLLLLLLLLLLLLLLLQLHSVSDVYGQA---ASNLVAGSNLEATVQQILD 176
+ + + + + + + +A A+ L G+ V+ +++
Sbjct: 97 PEKKVEAPSSTVAESTSTTQTVAAAAPSNPDTTATSEAPIDANTLAVGAQRNVAVENMVE 156
Query: 177 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 236
MG ++R V RA+RAA+NNP+RAVEYL +GIPE + R A Q
Sbjct: 157 MG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDI----LNRQREESAAA---LAAQQ 206
Query: 237 QQPAAPAPTSGPNANPLDLFPQGLPNMGSN-------AGAGTLDFLRNSQQFQALRTMVQ 289
QQ A APTS P +LF Q + N G L FLR+ QFQ LR +VQ
Sbjct: 207 QQSEALAPTS--TGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQ 264
Query: 290 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--- 346
NPQ+L+ +LQ++G+ +P L + I ++ FL+L+ EG EG SA+P
Sbjct: 265 QNPQMLETILQQIGQGDPALAQAITQNPEAFLQLL---AEGAEGE------SALPSGGIQ 315
Query: 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
+ +T EE E+I+RL +GFDR +V++ + AC+KNEELAANYL +H HE ED
Sbjct: 316 IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
>sp|P54726|RD23A_MOUSE UV excision repair protein RAD23 homolog A OS=Mus musculus
GN=Rad23a PE=1 SV=2
Length = 363
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 140/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ +QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQAPEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIK 62
Query: 61 ENKVAENSFVVVMLTKV 77
E + E +FVVVM+TK
Sbjct: 63 EYHIDEKNFVVVMVTKA 79
>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A OS=Homo sapiens
GN=RAD23A PE=1 SV=1
Length = 363
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 141/249 (56%), Gaps = 47/249 (18%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QPA A AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPATEA-----------------------AGENPLEFLR 236
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 237 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 296
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 297 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 356 LS--QNFDD 362
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKT 79
>sp|A3KMV2|RD23A_BOVIN UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A
PE=2 SV=1
Length = 362
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 141/249 (56%), Gaps = 48/249 (19%)
Query: 157 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 216
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 203
Query: 217 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 276
S + G+ ++QP+ + AG L+FLR
Sbjct: 204 ----GSPEPEHGSVQESQVSEQPS------------------------TEAGENPLEFLR 235
Query: 277 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 330
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISD 295
Query: 331 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 296 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 389 LDHMHEFED 397
L F+D
Sbjct: 355 LS--QNFDD 361
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTKV 77
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTKA 79
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 132/271 (48%), Gaps = 56/271 (20%)
Query: 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 220
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 142 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 198
Query: 221 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS-- 278
+A A T A+QPA DLF Q G NA +G L +
Sbjct: 199 QTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGTTGGATD 245
Query: 279 --------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------------L 309
+ +LR +V NP+ L P+L+ + + P L
Sbjct: 246 AAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSML 305
Query: 310 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLE 361
+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL
Sbjct: 306 LEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLC 365
Query: 362 AMGFDRALVLEVFFACNKNEELAANYLL-DH 391
+GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 366 ELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>sp|Q54LV1|RAD23_DICDI UV excision repair protein RAD23 homolog OS=Dictyostelium
discoideum GN=rcbA PE=1 SV=1
Length = 342
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 113/236 (47%), Gaps = 51/236 (21%)
Query: 156 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 215
Q +S+ G+ LEAT++ I DMG + R+ V+RALR +NN ERA+EYL SG
Sbjct: 152 QQSSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG------- 201
Query: 216 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 275
N PA + G NP + L
Sbjct: 202 -------------NIPAANDPEDEEEMEGGGGSGDNPFEA-------------------L 229
Query: 276 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 335
RN F LR + NP I+ +LQ+L + NP L+R IQE+ +F+RL
Sbjct: 230 RNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQG--------D 281
Query: 336 LGQLASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 390
+ + VT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 282 GNPGGNPGQFTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ F+V+M+ K
Sbjct: 58 SYNITDSGFIVMMIKK 73
>sp|P0C276|RL40_SHEEP Ubiquitin-60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=2
SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P62986|RL40_RAT Ubiquitin-60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52
PE=1 SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P0C275|RL40_PONPY Ubiquitin-60S ribosomal protein L40 OS=Pongo pygmaeus GN=UBA52 PE=2
SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P63053|RL40_PIG Ubiquitin-60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=1
SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P68205|RL40_OPHHA Ubiquitin-60S ribosomal protein L40 OS=Ophiophagus hannah PE=2 SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P62984|RL40_MOUSE Ubiquitin-60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=1
SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P0C273|RL40_MACFA Ubiquitin-60S ribosomal protein L40 OS=Macaca fascicularis GN=UBA52
PE=2 SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P62987|RL40_HUMAN Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1
SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P63052|RL40_FELCA Ubiquitin-60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=2
SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P63050|RL40_CANFA Ubiquitin-60S ribosomal protein L40 OS=Canis familiaris GN=UBA52
PE=2 SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P63048|RL40_BOVIN Ubiquitin-60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=1
SV=2
Length = 128
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L QL Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKMICR---KCYARLHPR 106
>sp|P49632|RL40_CAEEL Ubiquitin-60S ribosomal protein L40 OS=Caenorhabditis elegans
GN=ubq-2 PE=3 SV=2
Length = 128
Score = 52.4 bits (124), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L QL Q+ Q+ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRQLAQKYNCDKQICR 97
>sp|P18101|RL40_DROME Ubiquitin-60S ribosomal protein L40 OS=Drosophila melanogaster
GN=RpL40 PE=1 SV=2
Length = 128
Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLRLLPRHNQRLHLR 114
+ + + S + ++L +R + P L L Q+ + R + RLH R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLRILAQKYNCDKMICR---KCYARLHPR 106
>sp|P69201|RL40_LEIMA Ubiquitin-60S ribosomal protein L40 OS=Leishmania major GN=UB-EP52
PE=3 SV=2
Length = 128
Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L++ TL
Sbjct: 1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEEGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L ++ + +V R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVMEPTLVALAKKYNWEKKVCR 97
>sp|P62976|UBIQP_CRIGR Polyubiquitin OS=Cricetulus griseus PE=2 SV=2
Length = 658
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ QG P QQ LI GK L+D TL
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 514 DYNIQKESTLHLVL 527
>sp|Q05120|UBIL_NPVOP Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=V-UBI PE=3 SV=1
Length = 93
Score = 49.3 bits (116), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +E +P D V VK+ I +G P QQ LI+ GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEG---VPVDQQRLIYAGKQLEDAQTLA 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHMVL 71
>sp|P23398|UBIQP_STRPU Polyubiquitin (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=2
Length = 133
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 57 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 113
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 114 DYNIQKESTLHLVL 127
>sp|P46575|RL40_EIMBO Ubiquitin-60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=2
Length = 129
Score = 49.3 bits (116), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|Q8SWD4|UBIQ_ENCCU Ubiquitin OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU02_0740i PE=1 SV=1
Length = 77
Score = 49.3 bits (116), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P40909|RL40_CRYNJ Ubiquitin-60S ribosomal protein L40 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=UBI1 PE=1 SV=2
Length = 129
Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L + + Q+ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLKALASKYNCEKQICR 97
>sp|P68200|RS27A_ICTPU Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus
GN=rps27a PE=2 SV=2
Length = 156
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P69200|RL40_LEITA Ubiquitin-60S ribosomal protein L40 OS=Leishmania tarentolae
GN=UB-EP52 PE=3 SV=2
Length = 128
Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL GT +EV+P D + +VK I+ +G P QQ LI K L++ TL
Sbjct: 1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFADKQLEEGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L ++ + +V R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGVMEPTLVALAKKYNWEKKVCR 97
>sp|P62979|RS27A_HUMAN Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A
PE=1 SV=2
Length = 156
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62978|RS27A_CAVPO Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A
PE=1 SV=2
Length = 156
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62992|RS27A_BOVIN Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1
SV=2
Length = 156
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62982|RS27A_RAT Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus
GN=Rps27a PE=1 SV=2
Length = 156
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P62983|RS27A_MOUSE Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a
PE=1 SV=2
Length = 156
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P79781|RS27A_CHICK Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A
PE=2 SV=3
Length = 156
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P15357|RS27A_DROME Ubiquitin-40S ribosomal protein S27a OS=Drosophila melanogaster
GN=RpS27A PE=1 SV=2
Length = 156
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68203|RS27A_SPOFR Ubiquitin-40S ribosomal protein S27a OS=Spodoptera frugiperda
PE=2 SV=2
Length = 156
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P0CH07|RL402_SCHPO Ubiquitin-60S ribosomal protein L40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubi2 PE=1 SV=1
Length = 128
Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L + + Q+ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLKALASKYNCEKQICR 97
>sp|P0CH06|RL401_SCHPO Ubiquitin-60S ribosomal protein L40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubi1 PE=1 SV=1
Length = 128
Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVMLTKVIRFHQVGPQLFQLHQQIRPKLQVLR 102
+ + + S + ++L +R + P L L + + Q+ R
Sbjct: 58 DYNIQKESTLHLVLR--LRGGIIEPSLKALASKYNCEKQICR 97
>sp|P62972|UBIQP_XENLA Polyubiquitin (Fragment) OS=Xenopus laevis PE=1 SV=2
Length = 167
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 16 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 72
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 73 DYNIQKESTLHLVL 86
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 92 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 148
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 149 DYNIQKESTLHLVL 162
>sp|P62975|UBIQ_RABIT Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1
Length = 76
Score = 48.5 bits (114), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68197|UBIQ_CERCA Ubiquitin OS=Ceratitis capitata PE=1 SV=1
Length = 76
Score = 48.5 bits (114), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+P D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,097,263
Number of Sequences: 539616
Number of extensions: 6013457
Number of successful extensions: 30309
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 29474
Number of HSP's gapped (non-prelim): 820
length of query: 397
length of database: 191,569,459
effective HSP length: 120
effective length of query: 277
effective length of database: 126,815,539
effective search space: 35127904303
effective search space used: 35127904303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)