Query 015999
Match_columns 397
No_of_seqs 320 out of 1497
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 7.1E-73 2.4E-77 567.1 23.7 345 1-396 8-368 (368)
2 2qsf_X RAD23, UV excision repa 100.0 8.1E-37 2.8E-41 273.9 10.9 127 268-394 21-171 (171)
3 3m62_B UV excision repair prot 99.8 1.1E-19 3.8E-24 151.6 8.0 78 1-81 2-79 (106)
4 1pve_A HHR23B, UV excision rep 99.8 1E-19 3.5E-24 140.5 5.0 62 269-330 3-64 (72)
5 1uel_A HHR23B, UV excision rep 99.8 2.6E-18 9E-23 140.2 12.4 78 1-81 1-81 (95)
6 3phx_B Ubiquitin-like protein 99.8 1.5E-18 5.2E-23 136.1 10.1 74 1-77 5-78 (79)
7 4dwf_A HLA-B-associated transc 99.8 1.2E-18 4.1E-23 140.2 9.4 75 1-79 6-80 (90)
8 2f4m_B UV excision repair prot 99.8 1E-18 3.5E-23 131.0 8.0 59 270-328 2-60 (61)
9 4fbj_B NEDD8; effector-HOST ta 99.8 2.1E-18 7.3E-23 138.8 9.9 77 1-80 1-77 (88)
10 2wyq_A HHR23A, UV excision rep 99.7 5E-18 1.7E-22 134.7 10.1 76 1-79 6-84 (85)
11 2kk8_A Uncharacterized protein 99.7 3.5E-18 1.2E-22 136.7 9.1 72 1-75 11-83 (84)
12 3v6c_B Ubiquitin; structural g 99.7 4E-18 1.4E-22 137.7 9.4 74 1-77 18-91 (91)
13 3plu_A Ubiquitin-like modifier 99.7 4E-18 1.4E-22 138.4 9.0 70 1-73 22-91 (93)
14 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 7.4E-18 2.5E-22 137.0 10.6 77 1-80 2-78 (96)
15 4a20_A Ubiquitin-like protein 99.7 3.8E-18 1.3E-22 140.6 8.4 74 1-77 20-97 (98)
16 2lxa_A Ubiquitin-like protein 99.7 3.1E-18 1.1E-22 138.1 7.4 73 1-76 2-78 (87)
17 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.2E-17 4.2E-22 138.8 11.2 77 1-81 18-94 (106)
18 1ndd_A NEDD8, protein (ubiquit 99.7 1.8E-17 6.3E-22 128.0 10.4 75 1-78 1-75 (76)
19 4hcn_B Polyubiquitin, ubiquiti 99.7 1.2E-17 4.1E-22 137.0 9.8 75 1-78 23-97 (98)
20 3dbh_I NEDD8; cell cycle, acti 99.7 9.6E-18 3.3E-22 133.8 8.6 75 1-78 13-87 (88)
21 1uh6_A Ubiquitin-like 5; beta- 99.7 7.1E-18 2.4E-22 139.2 7.8 71 1-74 29-99 (100)
22 2faz_A Ubiquitin-like containi 99.7 1.7E-17 5.9E-22 129.6 9.4 73 1-76 3-77 (78)
23 3a9j_A Ubiquitin; protein comp 99.7 3.2E-17 1.1E-21 126.6 10.5 75 1-78 1-75 (76)
24 3n3k_B Ubiquitin; hydrolase, p 99.7 1.8E-17 6.2E-22 131.2 9.0 76 1-79 4-79 (85)
25 1wy8_A NP95-like ring finger p 99.7 4.5E-17 1.6E-21 130.5 11.3 76 1-79 8-85 (89)
26 2dzi_A Ubiquitin-like protein 99.7 2.7E-17 9.1E-22 129.0 9.4 73 1-76 8-80 (81)
27 2hj8_A Interferon-induced 17 k 99.7 2.1E-17 7.2E-22 132.8 8.9 75 1-78 5-79 (88)
28 1ttn_A DC-UBP, dendritic cell- 99.7 2.2E-17 7.4E-22 137.5 9.3 76 1-79 24-99 (106)
29 4eew_A Large proline-rich prot 99.7 2.5E-17 8.5E-22 131.9 9.1 71 1-75 18-88 (88)
30 1wgd_A Homocysteine-responsive 99.7 3.5E-17 1.2E-21 132.8 10.1 76 1-79 8-89 (93)
31 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3.2E-17 1.1E-21 129.6 9.5 76 1-79 4-79 (85)
32 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 4.2E-17 1.4E-21 130.0 10.2 76 1-79 8-83 (87)
33 2uyz_B Small ubiquitin-related 99.7 2.2E-17 7.4E-22 129.5 8.3 75 1-78 4-78 (79)
34 1sif_A Ubiquitin; hydrophobic 99.7 3.6E-17 1.2E-21 131.5 9.7 75 1-78 10-84 (88)
35 1wia_A Hypothetical ubiquitin- 99.7 4.5E-17 1.6E-21 132.5 9.5 74 1-80 8-82 (95)
36 2kan_A Uncharacterized protein 99.7 6.8E-17 2.3E-21 131.8 10.4 75 1-79 16-91 (94)
37 1v2y_A 3300001G02RIK protein; 99.7 2.6E-17 9E-22 137.1 7.5 77 1-80 8-100 (105)
38 1v5o_A 1700011N24RIK protein; 99.7 6.9E-17 2.4E-21 133.5 9.6 77 1-80 8-89 (102)
39 1wyw_B Ubiquitin-like protein 99.7 4.7E-17 1.6E-21 133.3 8.5 75 1-78 22-96 (97)
40 1wju_A NEDD8 ultimate buster-1 99.7 9.3E-17 3.2E-21 132.5 9.8 73 2-78 17-93 (100)
41 2bwf_A Ubiquitin-like protein 99.7 1.2E-16 3.9E-21 124.2 9.8 71 1-75 5-75 (77)
42 3vdz_A Ubiquitin-40S ribosomal 99.7 1E-16 3.5E-21 134.6 9.8 75 1-78 36-110 (111)
43 1yx5_B Ubiquitin; proteasome, 99.7 1.6E-16 5.5E-21 130.0 10.7 76 1-79 1-76 (98)
44 1wx8_A Riken cDNA 4931431F19; 99.7 5.8E-17 2E-21 132.0 7.8 75 1-79 18-92 (96)
45 1wgh_A Ubiquitin-like 3, HCG-1 99.7 2E-16 6.8E-21 134.1 11.2 77 1-77 17-100 (116)
46 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.7E-16 5.8E-21 131.1 10.0 74 1-78 26-99 (101)
47 1yqb_A Ubiquilin 3; structural 99.7 1.3E-16 4.4E-21 131.6 9.2 75 1-79 23-97 (100)
48 3b1l_X E3 ubiquitin-protein li 99.5 4E-18 1.4E-22 132.5 0.0 75 1-78 1-75 (76)
49 1j8c_A Ubiquitin-like protein 99.7 1.9E-16 6.6E-21 135.8 10.0 76 1-80 33-108 (125)
50 2l7r_A Ubiquitin-like protein 99.7 1.9E-16 6.4E-21 128.8 9.0 73 1-78 20-92 (93)
51 3l0w_B Monoubiquitinated proli 99.7 5.2E-16 1.8E-20 139.8 11.6 77 1-80 1-77 (169)
52 1wgg_A Ubiquitin carboxyl-term 99.6 2.3E-16 7.8E-21 129.3 8.2 72 1-77 8-80 (96)
53 1x1m_A Ubiquitin-like protein 99.6 5.7E-16 2E-20 129.1 10.1 74 1-77 13-101 (107)
54 2gow_A HCG-1 protein, ubiquiti 99.6 2.9E-16 9.8E-21 134.8 8.1 75 1-78 18-102 (125)
55 1dv0_A DNA repair protein HHR2 99.6 3E-17 1E-21 117.4 1.6 47 350-396 1-47 (47)
56 2ojr_A Ubiquitin; lanthide-bin 99.6 8.6E-16 2.9E-20 128.8 10.7 75 1-78 36-110 (111)
57 1ify_A HHR23A, UV excision rep 99.6 1.7E-16 5.9E-21 114.4 5.4 49 160-211 1-49 (49)
58 2fnj_B Transcription elongatio 99.6 4.4E-16 1.5E-20 132.0 8.1 72 1-75 1-80 (118)
59 2kdb_A Homocysteine-responsive 99.6 3.9E-16 1.3E-20 128.7 7.5 71 1-73 24-99 (99)
60 1se9_A Ubiquitin family; ubiqu 99.6 7.2E-16 2.5E-20 132.1 9.3 79 1-79 17-106 (126)
61 2kdi_A Ubiquitin, vacuolar pro 99.6 1.5E-15 5E-20 128.2 10.7 76 1-79 10-85 (114)
62 3m63_B Ubiquitin domain-contai 99.6 2.6E-16 8.9E-21 130.1 5.8 72 1-76 29-100 (101)
63 4ajy_B Transcription elongatio 99.6 6.1E-16 2.1E-20 130.9 8.1 73 1-76 1-81 (118)
64 3rt3_B Ubiquitin-like protein 99.6 1E-15 3.5E-20 135.4 9.9 76 1-79 82-157 (159)
65 1v5t_A 8430435I17RIK protein; 99.6 1.3E-15 4.6E-20 123.0 9.5 72 1-76 8-83 (90)
66 1wxv_A BAG-family molecular ch 99.6 1.6E-15 5.6E-20 122.5 10.0 73 1-77 8-86 (92)
67 1we6_A Splicing factor, putati 99.6 1E-15 3.5E-20 128.3 8.5 76 1-79 28-107 (111)
68 2kd0_A LRR repeats and ubiquit 99.6 2.4E-15 8.1E-20 120.3 9.5 70 3-75 14-83 (85)
69 3u30_A Ubiquitin, linear DI-ub 99.6 2.3E-15 7.7E-20 135.2 10.2 75 1-78 21-95 (172)
70 3q3f_A Ribonuclease/ubiquitin 99.6 1.6E-15 5.6E-20 138.8 9.0 76 1-79 106-181 (189)
71 3rt3_B Ubiquitin-like protein 99.6 3E-15 1E-19 132.4 10.1 72 1-75 3-76 (159)
72 4dbg_A Ranbp-type and C3HC4-ty 99.6 3.6E-15 1.2E-19 124.0 9.6 72 1-75 25-99 (105)
73 1v86_A DNA segment, CHR 7, way 99.6 1.3E-15 4.5E-20 124.4 6.8 71 1-76 18-88 (95)
74 2daf_A FLJ35834 protein; hypot 99.6 4.1E-15 1.4E-19 125.3 9.8 74 2-78 17-91 (118)
75 3u5e_m 60S ribosomal protein L 99.6 1.4E-16 4.9E-21 136.9 0.0 76 1-79 1-76 (128)
76 3b08_A Polyubiquitin-C, ubiqui 99.6 1.2E-14 4.1E-19 126.6 10.7 73 1-76 1-73 (152)
77 1we7_A SF3A1 protein; structur 99.6 1.3E-14 4.6E-19 122.2 10.0 76 1-79 26-111 (115)
78 3u30_A Ubiquitin, linear DI-ub 99.6 6.8E-15 2.3E-19 132.0 8.5 75 1-78 97-171 (172)
79 3b08_A Polyubiquitin-C, ubiqui 99.5 1.5E-14 5E-19 126.1 10.2 75 1-78 77-151 (152)
80 3u5c_f 40S ribosomal protein S 99.5 7.7E-16 2.6E-20 136.4 0.7 77 1-80 1-77 (152)
81 2dzj_A Synaptic glycoprotein S 99.5 8.7E-15 3E-19 118.0 6.4 69 1-72 11-85 (88)
82 2dzm_A FAS-associated factor 1 99.5 1.7E-14 5.8E-19 119.1 6.8 71 1-75 9-81 (100)
83 3ai5_A Yeast enhanced green fl 99.5 8.2E-14 2.8E-18 136.2 9.3 74 1-77 234-307 (307)
84 4b6w_A Tubulin-specific chaper 99.4 9E-14 3.1E-18 111.6 6.0 72 2-76 4-84 (86)
85 1wf9_A NPL4 family protein; be 99.4 1.3E-13 4.6E-18 114.8 7.1 71 1-75 8-94 (107)
86 2kjr_A CG11242; UBL, ubiquitin 99.4 3.8E-13 1.3E-17 110.0 9.3 70 1-73 16-93 (95)
87 2lbc_A Ubiquitin carboxyl-term 99.4 3.9E-13 1.3E-17 115.3 9.8 42 355-396 80-122 (126)
88 2xzm_9 RPS31E; ribosome, trans 99.4 2.6E-14 8.9E-19 130.4 0.0 71 1-79 1-71 (189)
89 2kj6_A Tubulin folding cofacto 99.4 8.9E-13 3E-17 108.2 8.6 71 2-75 16-95 (97)
90 1v6e_A Cytoskeleton-associated 99.4 1.2E-12 4E-17 106.6 8.2 72 1-75 8-87 (95)
91 2kzr_A Ubiquitin thioesterase 99.4 1.1E-12 3.9E-17 104.7 7.1 71 1-75 1-77 (86)
92 2io1_B Small ubiquitin-related 99.3 3.9E-12 1.3E-16 103.7 8.2 76 1-79 8-83 (94)
93 3shq_A UBLCP1; phosphatase, hy 99.3 2.3E-12 8E-17 126.9 6.2 72 1-76 6-80 (320)
94 2g3q_A Protein YBL047C; endocy 99.3 4.2E-12 1.4E-16 88.8 5.6 40 167-209 4-43 (43)
95 1t0y_A Tubulin folding cofacto 99.3 9.2E-12 3.1E-16 106.1 8.8 73 1-76 7-87 (122)
96 1vej_A Riken cDNA 4931431F19; 99.3 7.5E-12 2.6E-16 97.3 6.8 46 164-212 26-72 (74)
97 1wm3_A Ubiquitin-like protein 99.3 2.3E-11 7.9E-16 94.1 9.2 71 1-74 2-72 (72)
98 1vg5_A RSGI RUH-014, rhomboid 99.2 7.1E-12 2.4E-16 97.3 6.1 44 164-210 26-69 (73)
99 4ae4_A Ubiquitin-associated pr 99.2 4.5E-11 1.5E-15 101.3 11.3 39 353-391 76-114 (118)
100 2bwb_A Ubiquitin-like protein 99.2 9.2E-12 3.2E-16 88.4 5.6 40 166-208 6-46 (46)
101 2io0_B Small ubiquitin-related 99.2 3E-11 1E-15 97.9 9.3 75 1-78 6-80 (91)
102 3a4r_A Nfatc2-interacting prot 99.2 7.2E-11 2.5E-15 93.1 10.0 70 1-73 8-78 (79)
103 2g3q_A Protein YBL047C; endocy 99.2 1.9E-11 6.6E-16 85.4 5.7 37 355-391 6-42 (43)
104 2knz_A Ubiquilin-4; cytoplasm, 99.2 1.9E-11 6.6E-16 89.3 5.5 43 165-210 9-52 (53)
105 1veg_A NEDD8 ultimate buster-1 99.2 2.7E-11 9.3E-16 96.1 6.4 45 167-214 29-76 (83)
106 2d07_B Ubiquitin-like protein 99.2 6.6E-11 2.3E-15 96.2 8.8 74 1-77 18-91 (93)
107 1wz0_A Ubiquitin-like protein 99.2 7.3E-11 2.5E-15 98.0 8.5 75 1-78 25-99 (104)
108 1wji_A Tudor domain containing 99.1 4.6E-11 1.6E-15 90.3 5.9 42 167-211 9-50 (63)
109 2jy5_A Ubiquilin-1; UBA, alter 99.1 5.2E-11 1.8E-15 86.6 5.6 41 165-208 10-51 (52)
110 2k8h_A Small ubiquitin protein 99.1 1.3E-10 4.3E-15 97.5 7.6 75 1-78 27-101 (110)
111 2dna_A Unnamed protein product 99.1 8E-11 2.7E-15 89.6 5.7 45 165-212 17-62 (67)
112 1wr1_B Ubiquitin-like protein 99.1 6.9E-11 2.4E-15 87.8 5.0 41 165-208 15-56 (58)
113 2eke_C Ubiquitin-like protein 99.1 2.2E-10 7.7E-15 95.3 8.1 73 1-77 32-104 (106)
114 2dak_A Ubiquitin carboxyl-term 99.1 8.1E-11 2.8E-15 89.0 4.2 44 166-212 8-51 (63)
115 1wji_A Tudor domain containing 99.1 1.3E-10 4.5E-15 87.8 4.9 42 354-395 10-51 (63)
116 2bwb_A Ubiquitin-like protein 99.0 3.5E-10 1.2E-14 80.2 6.3 42 350-391 2-46 (46)
117 2knz_A Ubiquilin-4; cytoplasm, 99.0 2.8E-10 9.7E-15 83.1 6.0 44 349-392 5-51 (53)
118 1wiv_A UBP14, ubiquitin-specif 99.0 2.6E-10 8.7E-15 88.7 5.7 41 167-210 29-69 (73)
119 2jy5_A Ubiquilin-1; UBA, alter 99.0 2.9E-10 9.9E-15 82.7 5.0 42 350-391 7-51 (52)
120 2crn_A Ubash3A protein; compac 99.0 1.8E-10 6.1E-15 87.4 3.9 46 164-212 6-52 (64)
121 1wgn_A UBAP1, ubiquitin associ 99.0 3.3E-10 1.1E-14 83.9 5.2 48 346-393 12-59 (63)
122 1z96_A DNA-damage, UBA-domain 99.0 3.7E-10 1.3E-14 77.3 5.1 39 165-206 2-40 (40)
123 2cpw_A CBL-interacting protein 99.0 3.9E-10 1.3E-14 85.5 5.5 42 355-396 21-63 (64)
124 1wjn_A Tubulin-folding protein 99.0 1E-09 3.5E-14 89.3 8.1 71 2-75 11-92 (97)
125 1vg5_A RSGI RUH-014, rhomboid 99.0 4E-10 1.4E-14 87.5 5.3 47 347-393 23-69 (73)
126 2dag_A Ubiquitin carboxyl-term 99.0 4.8E-10 1.6E-14 87.4 5.8 43 167-212 9-52 (74)
127 1z96_A DNA-damage, UBA-domain 99.0 4.3E-10 1.5E-14 76.9 4.9 39 351-389 2-40 (40)
128 2dna_A Unnamed protein product 99.0 8.6E-10 2.9E-14 83.9 6.9 50 346-395 10-62 (67)
129 1ify_A HHR23A, UV excision rep 99.0 5E-10 1.7E-14 80.4 5.3 42 351-392 6-47 (49)
130 2cpw_A CBL-interacting protein 99.0 3.5E-10 1.2E-14 85.7 4.3 40 168-210 20-60 (64)
131 2dkl_A Trinucleotide repeat co 99.0 8.1E-10 2.8E-14 88.3 6.3 43 354-396 22-64 (85)
132 2ekk_A UBA domain from E3 ubiq 99.0 5.2E-10 1.8E-14 79.6 4.6 38 167-208 9-46 (47)
133 1whc_A RSGI RUH-027, UBA/UBX 3 98.9 4.5E-10 1.6E-14 85.1 4.2 42 168-212 10-52 (64)
134 1whc_A RSGI RUH-027, UBA/UBX 3 98.9 7.5E-10 2.6E-14 83.9 5.3 42 355-396 11-53 (64)
135 2dag_A Ubiquitin carboxyl-term 98.9 7.6E-10 2.6E-14 86.3 4.9 43 354-396 10-53 (74)
136 2dai_A Ubadc1, ubiquitin assoc 98.9 8.3E-10 2.8E-14 87.9 5.1 43 354-396 30-72 (83)
137 2ooa_A E3 ubiquitin-protein li 98.9 1.2E-09 4.1E-14 78.2 5.2 37 355-391 13-49 (52)
138 1wr1_B Ubiquitin-like protein 98.9 2E-09 7E-14 79.9 6.6 45 348-392 10-57 (58)
139 2crn_A Ubash3A protein; compac 98.9 1.3E-09 4.3E-14 82.7 5.2 42 355-396 11-53 (64)
140 1wiv_A UBP14, ubiquitin-specif 98.9 1.6E-09 5.5E-14 84.2 5.7 43 353-395 29-71 (73)
141 2dak_A Ubiquitin carboxyl-term 98.9 9E-10 3.1E-14 83.2 3.4 42 354-395 10-51 (63)
142 2dai_A Ubadc1, ubiquitin assoc 98.9 2.1E-09 7.1E-14 85.6 5.6 43 167-212 29-71 (83)
143 1vek_A UBP14, ubiquitin-specif 98.9 1.7E-09 5.9E-14 86.2 5.0 43 167-212 29-72 (84)
144 1wgn_A UBAP1, ubiquitin associ 98.8 2.5E-09 8.7E-14 79.1 4.8 38 168-208 20-57 (63)
145 2ekk_A UBA domain from E3 ubiq 98.8 2.5E-09 8.4E-14 76.0 4.3 37 355-392 11-47 (47)
146 2d9s_A CBL E3 ubiquitin protei 98.8 4E-09 1.4E-13 75.9 4.9 37 355-391 11-47 (53)
147 2dah_A Ubiquilin-3; UBA domain 98.8 5.3E-09 1.8E-13 76.6 5.4 40 355-394 11-51 (54)
148 1vej_A Riken cDNA 4931431F19; 98.8 6.7E-09 2.3E-13 80.7 5.8 46 349-394 23-71 (74)
149 1veg_A NEDD8 ultimate buster-1 98.8 5.7E-09 2E-13 82.8 5.4 40 355-394 31-70 (83)
150 2dah_A Ubiquilin-3; UBA domain 98.8 6E-09 2E-13 76.3 4.7 41 166-209 8-49 (54)
151 2lbc_A Ubiquitin carboxyl-term 98.8 7E-09 2.4E-13 88.7 6.0 41 167-210 78-118 (126)
152 1vek_A UBP14, ubiquitin-specif 98.8 6.1E-09 2.1E-13 83.1 4.9 43 354-396 30-73 (84)
153 2cwb_A Chimera of immunoglobul 98.8 8.5E-09 2.9E-13 85.7 5.8 43 165-210 64-107 (108)
154 3kyd_D Small ubiquitin-related 98.7 3.4E-08 1.1E-12 83.2 9.4 73 1-76 41-113 (115)
155 2dkl_A Trinucleotide repeat co 98.7 1.6E-08 5.5E-13 80.7 5.4 38 168-208 22-59 (85)
156 2juj_A E3 ubiquitin-protein li 98.7 2.5E-08 8.5E-13 71.9 5.0 38 354-391 8-45 (56)
157 1dv0_A DNA repair protein HHR2 98.6 1.3E-08 4.4E-13 72.4 1.5 41 166-209 3-43 (47)
158 2oo9_A E3 ubiquitin-protein li 98.5 1.1E-07 3.8E-12 66.1 4.9 37 355-391 6-42 (46)
159 2ooa_A E3 ubiquitin-protein li 98.5 1.2E-07 4E-12 67.9 5.2 38 167-207 11-48 (52)
160 3pge_A SUMO-modified prolifera 98.5 3.2E-07 1.1E-11 84.3 9.0 76 1-80 30-105 (200)
161 2cwb_A Chimera of immunoglobul 98.5 1.2E-07 4E-12 78.8 5.4 40 354-393 67-107 (108)
162 2pjh_A Protein NPL4, nuclear p 98.5 1E-07 3.5E-12 75.2 4.4 69 1-73 5-78 (80)
163 2cp8_A NEXT to BRCA1 gene 1 pr 98.5 7.1E-08 2.4E-12 70.1 3.0 47 349-395 3-52 (54)
164 3tix_A Ubiquitin-like protein 98.5 2.1E-07 7.2E-12 84.5 6.7 75 1-79 58-132 (207)
165 2d9s_A CBL E3 ubiquitin protei 98.5 2E-07 6.9E-12 67.0 5.2 39 166-207 8-46 (53)
166 2oo9_A E3 ubiquitin-protein li 98.4 4.3E-07 1.5E-11 63.1 5.5 41 164-207 1-41 (46)
167 4ae4_A Ubiquitin-associated pr 98.4 3.3E-07 1.1E-11 77.5 5.9 45 348-392 3-47 (118)
168 3k9o_A Ubiquitin-conjugating e 98.4 3.2E-07 1.1E-11 84.4 5.4 75 305-391 127-201 (201)
169 2juj_A E3 ubiquitin-protein li 98.3 8E-07 2.7E-11 64.0 4.8 40 166-208 6-45 (56)
170 3goe_A DNA repair protein RAD6 98.3 4.6E-06 1.6E-10 64.9 9.5 70 2-74 11-81 (82)
171 3v7o_A Minor nucleoprotein VP3 98.2 2.5E-07 8.6E-12 85.1 0.0 74 1-78 22-95 (227)
172 1wj7_A Hypothetical protein (R 98.1 4E-06 1.4E-10 68.9 6.6 42 352-393 38-80 (104)
173 2jxx_A Nfatc2-interacting prot 98.1 1.2E-05 4E-10 65.7 9.3 70 1-73 26-96 (97)
174 3k9o_A Ubiquitin-conjugating e 98.1 2.1E-06 7E-11 79.0 5.2 43 162-207 158-200 (201)
175 3e46_A Ubiquitin-conjugating e 98.1 2.7E-06 9.2E-11 80.9 5.7 75 305-391 179-253 (253)
176 1wj7_A Hypothetical protein (R 98.0 7.9E-06 2.7E-10 67.1 6.0 44 165-211 37-81 (104)
177 1oqy_A HHR23A, UV excision rep 97.9 4.3E-06 1.5E-10 83.6 3.5 42 353-394 168-209 (368)
178 4efo_A Serine/threonine-protei 97.9 5.4E-05 1.8E-09 61.3 8.5 68 3-73 15-86 (94)
179 2l76_A Nfatc2-interacting prot 97.8 0.0001 3.4E-09 59.7 9.0 72 1-76 22-93 (95)
180 3uf8_A Ubiquitin-like protein 97.8 4.3E-05 1.5E-09 70.5 7.7 73 2-78 23-95 (209)
181 2cp8_A NEXT to BRCA1 gene 1 pr 97.8 2.1E-05 7.3E-10 57.1 4.3 42 164-208 6-48 (54)
182 2al3_A TUG long isoform; TUG U 97.8 9E-05 3.1E-09 59.4 8.1 74 1-77 10-83 (90)
183 2qsf_X RAD23, UV excision repa 97.7 2.6E-05 8.7E-10 69.8 4.9 42 164-208 127-168 (171)
184 2bps_A YUKD protein; ubiquitin 97.7 5.9E-05 2E-09 59.5 6.1 71 2-72 6-80 (81)
185 2kc2_A Talin-1, F1; FERM, adhe 97.6 0.0001 3.5E-09 63.0 6.8 68 2-72 13-119 (128)
186 3ix6_A TS, tsase, thymidylate 97.6 8.6E-06 2.9E-10 80.9 0.0 74 1-78 22-95 (360)
187 4da1_A Protein phosphatase 1K, 97.3 3E-05 1E-09 77.7 0.0 74 2-79 32-105 (389)
188 3ihp_A Ubiquitin carboxyl-term 97.3 0.0004 1.4E-08 76.4 8.3 40 355-394 722-761 (854)
189 3qx1_A FAS-associated factor 1 97.3 0.0012 4.1E-08 51.9 8.6 68 2-73 9-81 (84)
190 2cos_A Serine/threonine protei 97.2 0.00043 1.5E-08 49.8 4.7 37 167-206 9-46 (54)
191 2dzk_A UBX domain-containing p 97.1 0.0036 1.2E-07 51.8 10.3 71 2-75 15-90 (109)
192 3e46_A Ubiquitin-conjugating e 97.0 0.00059 2E-08 64.8 5.4 44 161-207 209-252 (253)
193 1wgl_A TOLL-interacting protei 96.6 0.0024 8.3E-08 47.2 4.9 41 355-395 11-53 (59)
194 1wj4_A KIAA0794 protein; UBX d 96.5 0.0058 2E-07 51.7 7.2 68 2-73 45-117 (124)
195 2cr5_A Reproduction 8; UBX dom 96.1 0.037 1.3E-06 45.5 9.7 69 2-74 25-97 (109)
196 2cos_A Serine/threonine protei 96.1 0.0073 2.5E-07 43.5 4.4 39 354-392 10-49 (54)
197 2dhy_A CUE domain-containing p 95.9 0.0096 3.3E-07 45.1 4.9 37 354-391 19-58 (67)
198 1s3s_G P47 protein; AAA ATPase 95.8 0.025 8.7E-07 47.9 7.8 67 2-70 54-123 (127)
199 2pwq_A Ubiquitin conjugating e 95.7 0.0018 6E-08 60.1 0.0 38 354-391 178-215 (216)
200 2daj_A KIAA0977 protein, COBL- 95.6 0.056 1.9E-06 42.6 8.2 70 2-77 12-84 (91)
201 1wgl_A TOLL-interacting protei 95.3 0.017 5.9E-07 42.6 4.2 40 166-208 8-49 (59)
202 4e71_A Plexin-B2, MM1; transme 95.2 0.11 3.8E-06 43.0 9.3 64 10-74 23-109 (111)
203 2pwq_A Ubiquitin conjugating e 95.1 0.0036 1.2E-07 58.0 0.0 41 166-209 176-216 (216)
204 1otr_A Protein CUE2; protein-p 94.9 0.038 1.3E-06 39.2 4.7 39 167-208 4-44 (49)
205 2l32_A Small archaeal modifier 94.6 0.098 3.3E-06 40.1 7.0 60 1-73 1-60 (74)
206 2dam_A ETEA protein; KIAA0887, 94.6 0.083 2.8E-06 39.8 6.4 47 346-392 11-59 (67)
207 2dhy_A CUE domain-containing p 94.6 0.063 2.1E-06 40.6 5.6 46 162-208 13-58 (67)
208 2r2o_A Plexin-B1; effector dom 94.5 0.14 4.8E-06 43.9 8.2 65 11-76 41-129 (138)
209 1tte_A Ubiquitin-conjugating e 94.3 0.059 2E-06 49.7 5.9 76 305-382 122-198 (215)
210 2dal_A Protein KIAA0794; FAS a 94.2 0.1 3.5E-06 38.6 6.0 47 346-392 8-55 (62)
211 1ryj_A Unknown; beta/alpha pro 93.6 0.41 1.4E-05 35.8 8.5 60 1-73 5-64 (70)
212 3jyu_A Ubiquitin carboxyl-term 93.4 0.19 6.5E-06 46.6 7.7 61 13-76 154-221 (231)
213 3ihp_A Ubiquitin carboxyl-term 93.4 0.059 2E-06 59.3 4.9 41 165-208 718-758 (854)
214 1otr_A Protein CUE2; protein-p 93.4 0.11 3.7E-06 36.8 4.6 39 355-393 6-46 (49)
215 4a3p_A Ubiquitin carboxyl-term 93.3 0.22 7.6E-06 45.7 8.0 62 12-76 141-209 (217)
216 1v92_A NSFL1 cofactor P47; 3-h 93.3 0.15 5E-06 35.0 5.1 40 353-392 5-45 (46)
217 2di0_A Activating signal coint 93.2 0.26 8.8E-06 37.6 6.7 51 161-214 7-60 (71)
218 4fp9_B Mterf domain-containing 92.8 0.79 2.7E-05 44.9 11.4 93 283-392 94-195 (335)
219 2cp9_A EF-TS, EF-TSMT, elongat 92.7 0.17 5.7E-06 37.9 4.9 36 356-391 12-48 (64)
220 3h6n_A Plexin-D1; structural g 92.6 0.58 2E-05 39.5 8.7 65 10-75 16-104 (127)
221 3ivf_A Talin-1; FERM domain, c 92.2 0.44 1.5E-05 46.8 8.9 72 2-74 5-83 (371)
222 2cp9_A EF-TS, EF-TSMT, elongat 92.1 0.23 7.9E-06 37.1 5.1 35 169-206 11-46 (64)
223 4e74_A Plexin-A4; RBD, structu 91.3 0.61 2.1E-05 38.9 7.4 64 11-75 27-114 (117)
224 1vjk_A Molybdopterin convertin 91.2 1.5 5E-05 34.8 9.5 68 1-73 10-92 (98)
225 3rpf_C Molybdopterin convertin 90.9 0.7 2.4E-05 34.8 6.9 65 1-73 1-68 (74)
226 2llw_A Heat shock protein STI1 89.3 0.38 1.3E-05 36.6 4.1 38 272-314 22-59 (71)
227 1p3q_Q VPS9P, vacuolar protein 89.2 0.16 5.6E-06 36.6 1.9 38 354-391 13-52 (54)
228 1ufz_A Hypothetical protein BA 89.0 0.83 2.8E-05 35.7 5.9 45 347-391 24-75 (83)
229 1q02_A Sequestosome 1; helical 88.8 0.61 2.1E-05 33.2 4.5 36 354-389 11-48 (52)
230 1oey_A P67-PHOX, neutrophil cy 88.2 0.8 2.7E-05 35.9 5.4 67 2-74 7-80 (83)
231 4dbg_B Ring finger protein 31; 87.8 0.54 1.8E-05 41.2 4.6 35 354-388 103-138 (162)
232 2qho_B E3 ubiquitin-protein li 87.2 1.2 4E-05 31.4 5.0 28 364-391 22-49 (53)
233 2lnm_A Protein TIC 40, chlorop 86.8 0.67 2.3E-05 34.1 4.0 38 272-314 14-51 (62)
234 3po0_A Small archaeal modifier 86.4 4.7 0.00016 31.0 9.0 58 11-73 18-83 (89)
235 2juo_A GA-binding protein alph 85.9 2.2 7.6E-05 33.4 6.6 62 13-77 5-66 (89)
236 1tyg_B YJBS; alpha beta barrel 85.5 1.2 4.2E-05 35.0 5.2 57 8-74 25-82 (87)
237 4dbg_B Ring finger protein 31; 84.6 0.75 2.6E-05 40.3 3.8 38 167-206 102-139 (162)
238 1ip9_A BEM1 protein; ubiquitin 83.8 1.8 6.2E-05 34.0 5.3 43 3-50 13-57 (85)
239 3hm6_X Plexin-B1; structural g 83.6 3 0.0001 43.9 8.6 64 11-75 274-361 (644)
240 1wgk_A Riken cDNA 2900073H19 p 83.4 1.3 4.5E-05 36.6 4.7 69 1-74 12-103 (114)
241 3m66_A Mterf3, mterf domain-co 83.4 4.9 0.00017 37.3 9.4 34 345-378 138-173 (270)
242 3kuz_A Plexin-C1; structural g 83.0 4.2 0.00014 34.2 7.6 60 11-73 39-124 (126)
243 1q02_A Sequestosome 1; helical 82.9 0.74 2.5E-05 32.8 2.5 39 165-206 8-48 (52)
244 3dwg_C 9.5 kDa culture filtrat 82.3 4 0.00014 31.7 7.0 71 1-73 1-87 (93)
245 2dzl_A Protein FAM100B; UBA-li 81.9 2.6 9E-05 31.4 5.4 38 355-392 19-57 (66)
246 2kl0_A Putative thiamin biosyn 81.6 1.6 5.4E-05 33.0 4.2 60 1-74 1-60 (73)
247 2k5p_A THis protein, thiamine- 81.3 1.8 6.1E-05 33.2 4.5 63 1-74 1-64 (78)
248 1ef1_A Moesin; membrane, FERM 80.6 6.8 0.00023 36.7 9.3 74 1-78 2-81 (294)
249 1f0z_A THis protein; ubiquitin 80.4 2.5 8.7E-05 30.9 4.9 60 1-73 1-60 (66)
250 2kmm_A Guanosine-3',5'-BIS(dip 80.1 3.5 0.00012 30.2 5.7 62 1-74 1-62 (73)
251 1h4r_A Merlin; FERM, neurofibr 79.3 7.8 0.00027 36.7 9.3 72 2-77 24-100 (314)
252 2di0_A Activating signal coint 79.2 3.3 0.00011 31.4 5.2 43 349-391 8-53 (71)
253 1pve_A HHR23B, UV excision rep 78.5 1.2 4E-05 34.0 2.5 40 271-315 18-60 (72)
254 3onh_A Ubiquitin-activating en 78.0 5.9 0.0002 33.3 6.9 51 20-74 19-78 (127)
255 1tr8_A Conserved protein (MTH1 78.0 3 0.0001 33.8 5.0 38 348-388 63-101 (102)
256 1vd2_A Protein kinase C, IOTA 77.6 7.1 0.00024 30.8 6.9 46 3-51 7-54 (89)
257 3e21_A HFAF1, FAS-associated f 77.2 2.7 9.3E-05 29.0 3.9 34 355-388 7-42 (45)
258 1vdl_A Ubiquitin carboxyl-term 76.9 3.4 0.00012 31.6 4.6 37 355-391 26-64 (80)
259 1ufz_A Hypothetical protein BA 76.7 5.2 0.00018 31.2 5.7 43 166-208 33-75 (83)
260 1tte_A Ubiquitin-conjugating e 75.5 1.8 6.1E-05 39.7 3.4 24 168-194 170-193 (215)
261 3ig3_A Plxna3 protein; plexin 75.2 9.6 0.00033 40.1 9.0 65 11-76 247-335 (627)
262 2k9x_A Tburm1, uncharacterized 74.7 1 3.5E-05 37.0 1.4 68 1-73 5-96 (110)
263 1ixs_A Holliday junction DNA h 74.4 3 0.0001 30.6 3.7 28 164-194 14-41 (62)
264 2qjl_A URM1, ubiquitin-related 72.5 5.1 0.00017 31.7 5.0 35 1-35 2-46 (99)
265 2i1j_A Moesin; FERM, coiled-co 72.4 10 0.00035 39.6 8.6 74 1-78 5-84 (575)
266 2lva_A Ubiquitin carboxyl-term 74.6 0.78 2.7E-05 38.4 0.0 36 356-391 21-58 (129)
267 2q5w_D Molybdopterin convertin 71.9 6.7 0.00023 29.1 5.3 54 11-73 16-71 (77)
268 2l52_A Methanosarcina acetivor 71.6 16 0.00053 28.8 7.7 69 1-73 4-93 (99)
269 3ivf_A Talin-1; FERM domain, c 70.4 15 0.0005 35.8 8.8 70 2-74 87-166 (371)
270 2f4m_B UV excision repair prot 70.0 2.1 7.1E-05 31.6 1.9 36 273-313 18-56 (61)
271 2llv_A Heat shock protein STI1 69.0 2.4 8.2E-05 32.0 2.1 36 274-314 27-63 (71)
272 1p3q_Q VPS9P, vacuolar protein 68.6 2.6 9E-05 30.3 2.1 40 166-206 11-50 (54)
273 2cu3_A Unknown function protei 67.8 6.7 0.00023 28.4 4.4 56 8-74 4-59 (64)
274 3qij_A Protein 4.1; cytoskelet 67.0 18 0.00063 34.1 8.5 70 1-73 18-93 (296)
275 1wgr_A Growth factor receptor- 65.4 19 0.00065 28.9 7.0 68 3-72 12-89 (100)
276 1tr8_A Conserved protein (MTH1 63.0 8.2 0.00028 31.2 4.4 36 168-206 66-102 (102)
277 3e7l_A Transcriptional regulat 62.8 10 0.00034 27.3 4.5 41 160-210 5-45 (63)
278 2kvr_A Ubiquitin carboxyl-term 61.5 6.2 0.00021 33.2 3.5 32 13-47 58-89 (130)
279 4eut_A Serine/threonine-protei 61.0 26 0.00091 33.6 8.6 52 10-64 321-374 (396)
280 2kmc_A Fermitin family homolog 59.9 66 0.0023 25.8 9.4 72 2-74 21-98 (102)
281 1y8x_B Ubiquitin-activating en 59.8 7.6 0.00026 31.2 3.6 59 12-73 6-82 (98)
282 1fm0_D Molybdopterin convertin 59.5 37 0.0013 25.1 7.4 56 12-73 18-75 (81)
283 3mva_O Transcription terminati 58.6 23 0.00078 34.1 7.6 38 166-206 18-59 (343)
284 1aip_C EF-TS, elongation facto 58.6 12 0.0004 33.9 5.0 35 169-206 5-40 (196)
285 3qa8_A MGC80376 protein; kinas 57.2 11 0.00037 40.2 5.4 51 10-63 321-372 (676)
286 3ge3_C Toluene-4-monooxygenase 56.2 35 0.0012 26.5 6.6 62 13-74 17-82 (84)
287 1xb2_B EF-TS, elongation facto 55.7 12 0.00043 35.7 5.0 36 169-207 6-42 (291)
288 3q8g_A CRAL-TRIO domain-contai 54.5 20 0.0007 34.2 6.4 45 346-390 32-84 (320)
289 2lnm_A Protein TIC 40, chlorop 54.4 5.1 0.00018 29.2 1.6 41 272-318 5-45 (62)
290 2ns5_A Partitioning-defective 52.5 69 0.0024 24.9 7.9 72 1-74 3-81 (85)
291 2ylm_A Ubiquitin carboxyl-term 51.8 42 0.0014 34.5 8.6 58 12-72 353-418 (530)
292 1rws_A Hypothetical protein PF 51.1 4.9 0.00017 30.3 1.1 48 14-73 24-71 (77)
293 2inc_C TOUB protein; DIIRON, 4 51.0 84 0.0029 24.3 8.7 62 13-74 15-81 (83)
294 2g1e_A Hypothetical protein TA 50.4 47 0.0016 25.0 6.8 58 15-73 19-84 (90)
295 1wgy_A RAP guanine nucleotide 49.8 62 0.0021 26.1 7.5 68 5-75 14-86 (104)
296 1b4u_A LIGA, LIGB, protocatech 48.9 36 0.0012 29.0 6.2 48 295-367 37-89 (139)
297 2eel_A Cell death activator CI 48.7 95 0.0033 24.4 8.2 49 21-75 28-78 (91)
298 3e7l_A Transcriptional regulat 48.6 9.9 0.00034 27.3 2.4 24 365-388 19-42 (63)
299 1ixs_A Holliday junction DNA h 47.1 24 0.00083 25.6 4.3 25 353-377 17-41 (62)
300 3w1s_C Ubiquitin-like protein 47.0 94 0.0032 24.3 8.0 57 14-75 26-85 (91)
301 3cz6_A DNA-binding protein RAP 46.2 18 0.00062 31.7 4.0 45 165-212 61-112 (168)
302 1zoq_C CREB-binding protein, i 46.0 14 0.00049 25.3 2.6 23 280-302 18-40 (47)
303 1v92_A NSFL1 cofactor P47; 3-h 45.7 44 0.0015 22.1 5.2 38 167-206 5-42 (46)
304 4gdk_A Ubiquitin-like protein 45.6 62 0.0021 25.3 6.8 59 14-75 23-85 (91)
305 4g3o_A E3 ubiquitin-protein li 45.1 44 0.0015 24.2 5.3 43 164-208 14-56 (58)
306 1umq_A Photosynthetic apparatu 44.7 12 0.00041 28.8 2.4 23 366-388 42-64 (81)
307 2c7h_A RBBP6, retinoblastoma-b 43.9 60 0.0021 25.3 6.3 41 3-46 9-51 (86)
308 3hvz_A Uncharacterized protein 42.7 59 0.002 24.6 6.1 62 2-75 7-68 (78)
309 2zjd_A Microtubule-associated 41.8 1E+02 0.0034 25.8 7.9 59 15-76 57-120 (130)
310 1eo6_A GATE-16, golgi-associat 39.4 1E+02 0.0034 25.2 7.4 58 16-76 50-111 (117)
311 2hj1_A Hypothetical protein; s 39.0 38 0.0013 26.9 4.6 59 11-74 26-84 (97)
312 3au4_A Myosin-X; protein-prote 38.6 53 0.0018 33.6 7.0 58 1-61 217-280 (555)
313 1g2h_A Transcriptional regulat 37.4 16 0.00053 26.1 1.9 26 182-210 21-46 (61)
314 1aua_A Phosphatidylinositol tr 36.0 40 0.0014 31.3 5.1 45 346-390 23-75 (296)
315 2llw_A Heat shock protein STI1 36.0 32 0.0011 25.8 3.5 41 272-318 13-53 (71)
316 2dal_A Protein KIAA0794; FAS a 35.9 52 0.0018 23.7 4.6 41 165-207 13-53 (62)
317 1q1o_A Cell division control p 35.5 41 0.0014 26.9 4.3 26 10-35 22-47 (98)
318 3rui_B Autophagy-related prote 35.0 1.8E+02 0.006 23.8 8.2 59 15-76 51-113 (118)
319 3u52_E Phenol hydroxylase comp 34.5 1.3E+02 0.0045 24.8 7.2 61 13-73 40-107 (119)
320 3k6g_A Telomeric repeat-bindin 33.6 47 0.0016 26.8 4.2 41 351-391 8-52 (111)
321 2r2q_A Gamma-aminobutyric acid 33.3 89 0.003 25.1 6.1 57 15-74 48-108 (110)
322 3r8s_T 50S ribosomal protein L 33.2 80 0.0027 24.8 5.6 40 11-53 28-68 (93)
323 3m95_A Autophagy related prote 32.9 1.3E+02 0.0044 25.0 7.1 59 15-76 57-119 (125)
324 1wz3_A Autophagy 12B, ATG12B, 32.6 1.1E+02 0.0037 24.1 6.4 56 14-75 31-90 (96)
325 3h9d_A ATG8, microtubule-assoc 31.0 2E+02 0.0067 23.6 7.9 59 15-76 52-114 (119)
326 1ntc_A Protein (nitrogen regul 30.7 16 0.00055 28.2 1.1 24 365-388 51-74 (91)
327 2ylm_A Ubiquitin carboxyl-term 30.4 43 0.0015 34.5 4.6 69 3-74 133-216 (530)
328 2kna_A Baculoviral IAP repeat- 29.9 36 0.0012 27.3 3.1 36 170-208 30-72 (104)
329 2dhz_A RAP guanine nucleotide 29.5 1.3E+02 0.0044 24.9 6.4 65 8-75 17-92 (120)
330 3hk0_A Growth factor receptor- 29.1 1.1E+02 0.0037 28.4 6.7 57 3-62 11-74 (256)
331 4fp9_B Mterf domain-containing 27.5 96 0.0033 29.9 6.2 32 346-377 105-137 (335)
332 1g2h_A Transcriptional regulat 27.2 29 0.001 24.6 1.9 23 365-388 21-43 (61)
333 2ztd_A Holliday junction ATP-d 26.8 40 0.0014 30.6 3.1 27 166-195 163-189 (212)
334 3m66_A Mterf3, mterf domain-co 26.8 1.3E+02 0.0045 27.4 6.9 36 344-379 173-212 (270)
335 1ltl_A DNA replication initiat 26.7 43 0.0015 31.3 3.5 54 272-325 19-74 (279)
336 1v8c_A MOAD related protein; r 26.6 1.6E+02 0.0055 25.4 7.0 56 14-73 17-81 (168)
337 4gmv_A RAS-associated and plec 26.5 2.1E+02 0.0072 26.9 8.3 68 3-72 34-111 (281)
338 1cuk_A RUVA protein; DNA repai 25.6 43 0.0015 30.1 3.1 26 166-194 159-184 (203)
339 1f2r_I Inhibitor of caspase-ac 24.8 1.1E+02 0.0037 24.6 5.0 48 21-73 37-88 (100)
340 1eto_A FIS, factor for inversi 24.7 43 0.0015 26.4 2.6 27 182-210 58-84 (98)
341 3pvl_A Myosin VIIA isoform 1; 24.7 1.4E+02 0.0046 31.6 7.3 46 1-48 264-309 (655)
342 1eto_A FIS, factor for inversi 24.5 39 0.0013 26.7 2.4 23 366-388 59-81 (98)
343 2nvu_B Maltose binding protein 24.3 98 0.0033 33.1 6.2 60 13-73 714-789 (805)
344 3kxe_C Antitoxin protein PARD- 23.8 84 0.0029 24.4 4.1 41 346-386 7-49 (88)
345 3tve_T 50S ribosomal protein L 23.7 1.1E+02 0.0036 24.1 4.7 41 10-53 21-62 (92)
346 3lxf_A Ferredoxin; iron, iron- 23.6 78 0.0027 24.8 4.0 26 2-27 2-27 (104)
347 2lgx_A Fermitin family homolog 23.6 48 0.0016 27.0 2.7 69 3-73 29-100 (112)
348 2ekf_A Ancient ubiquitous prot 23.3 1.6E+02 0.0056 21.4 5.3 42 165-208 11-52 (61)
349 1n62_A Carbon monoxide dehydro 22.9 60 0.002 28.2 3.4 27 2-29 5-31 (166)
350 1kbh_B CREB-binding protein, n 22.7 31 0.0011 24.8 1.2 31 280-311 9-41 (59)
351 2v1y_A Phosphatidylinositol-4, 22.5 1E+02 0.0036 24.9 4.6 71 3-74 22-103 (108)
352 3hrd_D Nicotinate dehydrogenas 22.4 60 0.0021 28.1 3.3 26 1-27 4-29 (160)
353 1pqs_A Cell division control p 22.1 69 0.0024 24.3 3.2 36 12-50 3-43 (77)
354 3onq_A Regulator of polyketide 21.7 55 0.0019 30.3 3.2 24 368-391 199-222 (262)
355 2zc2_A DNAD-like replication p 21.7 1E+02 0.0034 22.7 4.1 31 348-378 17-48 (78)
356 2ejs_A Autocrine motility fact 21.6 2E+02 0.0067 20.7 5.4 42 165-208 11-52 (58)
357 1t3q_A Quinoline 2-oxidoreduct 21.4 65 0.0022 27.8 3.4 28 1-29 10-37 (168)
358 2l9b_A MRNA 3'-END-processing 21.2 98 0.0033 25.2 4.1 29 281-313 58-86 (109)
359 2kkc_A Sequestosome-1; P62, PB 20.9 1.9E+02 0.0066 23.0 5.8 54 21-76 42-101 (102)
360 1l6x_B Minimized B-domain of p 20.7 1.4E+02 0.0046 19.2 3.8 15 348-362 17-32 (34)
361 1j0g_A Hypothetical protein 18 20.6 3E+02 0.01 21.2 6.4 61 14-77 27-88 (92)
362 1oai_A Nuclear RNA export fact 20.4 2.4E+02 0.0082 20.1 5.7 40 348-387 2-42 (59)
363 2ktr_A Sequestosome-1; autopha 20.1 1.7E+02 0.0059 24.0 5.5 54 21-76 57-116 (117)
364 2zjr_Q 50S ribosomal protein L 20.0 96 0.0033 24.5 3.8 38 12-52 24-62 (95)
365 1vdl_A Ubiquitin carboxyl-term 20.0 2.4E+02 0.0082 21.4 5.7 41 167-208 24-64 (80)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=7.1e-73 Score=567.11 Aligned_cols=345 Identities=34% Similarity=0.525 Sum_probs=244.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~---~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|+|+||+++|++|.|+|++++||.+||++|+++ .| +++++|||||+||+|+|+++|++|+|+++++|++++.+.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~g---ip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSS---CCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCC---CChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 899999999999999999999999999999994 56 999999999999999999999999999999996666665
Q ss_pred CCCCC-CCCCcccccCCCC---CccccccCCCCCchhhHHHHhhhhhhccc--cchhhHHHHHHHHHHHHHHhhccCCCC
Q 015999 78 IRFHQ-VGPQLFQLHQQIR---PKLQVLRLLPRHNQRLHLRLLHQLWHRHN--LSLNLLLLLLLLLLLLLLLLLQLHSVS 151 (397)
Q Consensus 78 ~~~~~-~~~~~~~~~~~~~---p~~~~~a~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~ 151 (397)
+..+. +.+..+.+.+.+. ++.+.+...|.++.+ ...+... ..+.++++| ..++. ..+.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~p----~~~~~-~~~~~~~~ 152 (368)
T 1oqy_A 85 KAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPP-------AAREDKSPSEESAPTTSP----ESVSG-SVPSSGSS 152 (368)
T ss_dssp CSSSCCCCCSSCCCCCSSSCCCSCCCSSSCCCCCCCS-------SSSCCCCCSCSCCCCSST----TCSCC-CSCSCCCS
T ss_pred CCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCc-------cccccCCccccCCCCCCC----Ccccc-cccccccc
Confidence 54332 1111111111110 000000000000000 0000000 000000011 00000 00011112
Q ss_pred cccccccccccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCCCCCCCCccccccCCCCCCCCC
Q 015999 152 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 231 (397)
Q Consensus 152 ~~~~~~~s~l~~g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP~~~~~~~~~~~~~~~~~~~~~ 231 (397)
..+..+.|+||+|+++|.+|++||+|| |+|++|++|||++|||||||||||++|||++.+...+ . ..+
T Consensus 153 ~~~~~~~s~l~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~----~----~~~- 220 (368)
T 1oqy_A 153 GREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG----S----VQE- 220 (368)
T ss_dssp CCCCCCCTTTCCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC----C----CCC-
T ss_pred cccccccccccCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC----C----ccc-
Confidence 334566899999999999999999999 9999999999999999999999999999987442210 0 000
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchHHhhccHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHH
Q 015999 232 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 311 (397)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~L~~~P~f~~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~ 311 (397)
. ...... +.++++.++|+|||++|+|++||++||+||++|+++||+|+++||+|++
T Consensus 221 --~------~~~~~~----------------~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~ 276 (368)
T 1oqy_A 221 --S------QVSEQP----------------ATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQ 276 (368)
T ss_dssp --C------CSSCCC----------------CSSCCSCCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHH
T ss_pred --c------cccccc----------------CccccccchHHHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHH
Confidence 0 000000 0122356789999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhcCCCCCC-CCc----cccccc--ccCCCcccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 015999 312 LIQEHQTDFLRLINEPVEGG-EGN----VLGQLA--SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384 (397)
Q Consensus 312 ~I~~n~~~Fl~~l~~~~~~~-~g~----~~~~~~--~~~~~~~~lt~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~A 384 (397)
+|++||++||+||+++.++. .+. ..+... ......|++|+||+++|+||++|||+|++||+||++|+||+++|
T Consensus 277 ~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A 356 (368)
T 1oqy_A 277 QISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLA 356 (368)
T ss_dssp HHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHH
T ss_pred HHHHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 99999999999999985421 110 011110 11124689999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCC
Q 015999 385 ANYLLDHMHEFE 396 (397)
Q Consensus 385 an~L~~~~~d~~ 396 (397)
+||||+|.+|+|
T Consensus 357 ~~~L~~~~~d~~ 368 (368)
T 1oqy_A 357 ANFLLSQNFDDE 368 (368)
T ss_dssp HHHHHHHHCCCC
T ss_pred HHHHhhCcCcCC
Confidence 999999987754
No 2
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=100.00 E-value=8.1e-37 Score=273.91 Aligned_cols=127 Identities=33% Similarity=0.565 Sum_probs=99.3
Q ss_pred CCCchHHhh-ccHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCCCCC------------CCc
Q 015999 268 GAGTLDFLR-NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------EGN 334 (397)
Q Consensus 268 ~~~~l~~L~-~~P~f~~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~~I~~n~~~Fl~~l~~~~~~~------------~g~ 334 (397)
++++|++|| ++|+|++||++|++||++|+++|++|+++||+|+++|++||++||+||+++..+. +|.
T Consensus 21 ~~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~ 100 (171)
T 2qsf_X 21 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGE 100 (171)
T ss_dssp -------CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC-----------------
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccchhhhhccccccccccc
Confidence 467799999 9999999999999999999999999999999999999999999999999885421 010
Q ss_pred ------ccccc-----cccCCCcccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015999 335 ------VLGQL-----ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394 (397)
Q Consensus 335 ------~~~~~-----~~~~~~~~~lt~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d 394 (397)
..+.. +...+..+.+||||+++|+||++|||+|+.||+||++|||||++|+||||++++|
T Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 101 DIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp --------------------EECCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC---
T ss_pred ccccccccccccccCCCCCCcccCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 00000 0111236899999999999999999999999999999999999999999998765
No 3
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-19 Score=151.56 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIRF 80 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~~ 80 (397)
|+|+||+++|++|.|+|++++||.+||.+|++++| +|+++|||+|+||+|+|+++|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876644
Q ss_pred C
Q 015999 81 H 81 (397)
Q Consensus 81 ~ 81 (397)
+
T Consensus 79 ~ 79 (106)
T 3m62_B 79 K 79 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 4
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.78 E-value=1e-19 Score=140.49 Aligned_cols=62 Identities=44% Similarity=0.880 Sum_probs=58.8
Q ss_pred CCchHHhhccHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCCCC
Q 015999 269 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 330 (397)
Q Consensus 269 ~~~l~~L~~~P~f~~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~~I~~n~~~Fl~~l~~~~~~ 330 (397)
.++|+|||++|+|++||++|++||++|+++|++|+++||+|+++|++||++|++||+++..+
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~~ 64 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 64 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSCSCC
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCCccC
Confidence 45689999999999999999999999999999999999999999999999999999998653
No 5
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.6e-18 Score=140.15 Aligned_cols=78 Identities=42% Similarity=0.665 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~---~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|+|+||+++|+.+.++|++++||.+||++|++. .| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999765
Q ss_pred CCCC
Q 015999 78 IRFH 81 (397)
Q Consensus 78 ~~~~ 81 (397)
+..+
T Consensus 78 ~~~~ 81 (95)
T 1uel_A 78 KAVS 81 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=136.10 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999865
No 7
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=1.2e-18 Score=140.16 Aligned_cols=75 Identities=28% Similarity=0.375 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|++|.|+|++++||.+||++|++++| +|+++|||+|+||.|+|+++|++|+| +|++|||+++.+..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 89999999986543
No 8
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.76 E-value=1e-18 Score=130.98 Aligned_cols=59 Identities=46% Similarity=0.935 Sum_probs=56.6
Q ss_pred CchHHhhccHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCC
Q 015999 270 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 328 (397)
Q Consensus 270 ~~l~~L~~~P~f~~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~~I~~n~~~Fl~~l~~~~ 328 (397)
+++++||++|+|++||++|++||++|+++|++|+++||+|+++|++||++|++||+++.
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e~~ 60 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSCC
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcccC
Confidence 46899999999999999999999999999999999999999999999999999998864
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=2.1e-18 Score=138.75 Aligned_cols=77 Identities=35% Similarity=0.486 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIRF 80 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~~ 80 (397)
|+|+||+++|++|.|+|++++||.+||++|++++| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.++..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987644
No 10
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.75 E-value=5e-18 Score=134.69 Aligned_cols=76 Identities=34% Similarity=0.607 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~---~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|+|+||+++|+.+.++|++++||.+||++|++. .| +|+++|||+|+||.|+|+++|++|+|++|++|||+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 77 999999999999999999999999999999999999776
Q ss_pred CC
Q 015999 78 IR 79 (397)
Q Consensus 78 ~~ 79 (397)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 53
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=3.5e-18 Score=136.68 Aligned_cols=72 Identities=36% Similarity=0.517 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCCCchhhcccCCCCEEEEEEe
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV-LKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKi-L~D~~tL~d~gI~~gstI~v~v~ 75 (397)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=4e-18 Score=137.69 Aligned_cols=74 Identities=39% Similarity=0.638 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|+|+||+++|++|.|+|++++||.+||++|++.+| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998764
No 13
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.74 E-value=4e-18 Score=138.44 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.||++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999986
No 14
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.74 E-value=7.4e-18 Score=137.00 Aligned_cols=77 Identities=36% Similarity=0.549 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIRF 80 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~~ 80 (397)
|+|+||+++|++|.|+|++++||.+||++|++.++ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877644
No 15
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.74 E-value=3.8e-18 Score=140.57 Aligned_cols=74 Identities=27% Similarity=0.445 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhccc-CCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEI--EVKPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~v--eV~~~~TV~dLK~~I-~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI-~~gstI~v~v~k 76 (397)
|+|+||+++|++|.+ +|++++||.+||++| ++..| +|+++|||||+||+|+|+++|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 77778 99999999999999999999999999 999999999986
Q ss_pred c
Q 015999 77 V 77 (397)
Q Consensus 77 ~ 77 (397)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.1e-18 Score=138.13 Aligned_cols=73 Identities=29% Similarity=0.457 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCchhhccc-CCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~--~~~TV~dLK~~I-~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI-~~gstI~v~v~k 76 (397)
|+|+||+++|++|.|+|+ +++||.+||++| ++..| +|+++|||||+||+|+|+.+|++|+| ++|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 88889 99999999999999999999999999 699999999864
No 17
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.2e-17 Score=138.83 Aligned_cols=77 Identities=27% Similarity=0.309 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIRF 80 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~~ 80 (397)
|+|+||+.+|+ |.|+|++++||.+||++|+++++ +++++|||+|+||+|+|+++|++|+|+++++|||+++++..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999999886 79999999999999999999999 999999999999999999999999999999999999876544
Q ss_pred C
Q 015999 81 H 81 (397)
Q Consensus 81 ~ 81 (397)
.
T Consensus 94 ~ 94 (106)
T 1wx7_A 94 M 94 (106)
T ss_dssp C
T ss_pred C
Confidence 3
No 18
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.73 E-value=1.8e-17 Score=127.96 Aligned_cols=75 Identities=36% Similarity=0.527 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+.+|+++.++|++++||.+||.+|++..+ +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988653
No 19
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=136.97 Aligned_cols=75 Identities=36% Similarity=0.554 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++|++|.|+|++++||.+||++|+++++ +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.72 E-value=9.6e-18 Score=133.78 Aligned_cols=75 Identities=36% Similarity=0.523 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++|++|.|+|++++||.+||.+|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999988654
No 21
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=7.1e-18 Score=139.20 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||||.||+|+|+.+|++|+|+++++|+|+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999863
No 22
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.7e-17 Score=129.61 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHF-EIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~-~ve-V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
|+|+||+++|+++ .++ |++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|++|++|||+++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 9999999999999999999 99999999999999999999999999999999999875
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.72 E-value=3.2e-17 Score=126.60 Aligned_cols=75 Identities=37% Similarity=0.578 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+.+|+.+.++|++++||.+||++|++..+ +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988653
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-17 Score=131.17 Aligned_cols=76 Identities=36% Similarity=0.533 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|+++.++|++++||.+||++|+++++ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 25
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.5e-17 Score=130.50 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=72.1
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKG-THFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~g-k~~~v-eV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++| +++.| +|++++||.+||++|++..+ +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7999999999 79999 59999999999999999999 9999999999999999999999999999999999998765
Q ss_pred C
Q 015999 79 R 79 (397)
Q Consensus 79 ~ 79 (397)
.
T Consensus 85 G 85 (89)
T 1wy8_A 85 G 85 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 26
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=129.03 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999864
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=132.84 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++|+++.++|++++||.+||.+|++..| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999988654
No 28
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.2e-17 Score=137.50 Aligned_cols=76 Identities=20% Similarity=0.389 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|+++.++|++++||.+||.+|+.+.| +++++|||+|+||.|+|+++|++|||++|++|||+++++..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999876554
No 29
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=131.88 Aligned_cols=71 Identities=30% Similarity=0.411 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEe
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~ 75 (397)
|+|+||+++|+++.++|++++||.+||++|++++| +|+++|||+|+||.|+|+++|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 30
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.5e-17 Score=132.78 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=70.8
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCCCchhhc--ccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ--GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk--~~~veV~~~~TV~dLK~~I~~~~--g~~~ip~~~qrLiy~GKiL~D~~tL~d~--gI~~gstI~v~v 74 (397)
|+|+||+.+++ .+.|+|++++||.+||++|++++ + +++++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 79999999988 67788889999999999999998 8 999999999999999999999999 999999999998
Q ss_pred eecCC
Q 015999 75 TKVIR 79 (397)
Q Consensus 75 ~k~~~ 79 (397)
+.+..
T Consensus 85 ~~~gg 89 (93)
T 1wgd_A 85 NVKSG 89 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 31
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.2e-17 Score=129.61 Aligned_cols=76 Identities=37% Similarity=0.565 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|+++.|+|++++||.+||++|+++++ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987653
No 32
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.2e-17 Score=130.02 Aligned_cols=76 Identities=29% Similarity=0.432 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|+++.++|++++||.+||++|++..+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987653
No 33
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.71 E-value=2.2e-17 Score=129.49 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+.+|+++.++|++++||.+||++|+++.| +|+++|||+|+||.|+|++||++|+|+++++|+|+++.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.6e-17 Score=131.53 Aligned_cols=75 Identities=33% Similarity=0.581 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++|+++.++|++++||.+||++|++..+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988654
No 35
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=4.5e-17 Score=132.51 Aligned_cols=74 Identities=27% Similarity=0.257 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~-~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|+.+.++|++++||.+||++|+.. . +++|||||+||.|+|+ ++|++|+|++|++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----~-~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPG-----Q-ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS-----T-TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh-----C-cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 789999999999999999999999999999765 3 7899999999999999 99999999999999999887654
Q ss_pred C
Q 015999 80 F 80 (397)
Q Consensus 80 ~ 80 (397)
+
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=6.8e-17 Score=131.82 Aligned_cols=75 Identities=32% Similarity=0.405 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~-~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||++++ ++.|+|++++||.+||++|+++.| +|+++|||+|+||.|+|+ ++|++|+|+++++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987654
No 37
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.6e-17 Score=137.09 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CCCchhhccc
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---------------SQQMLIHQGKVLK-DVTTLEENKV 64 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~---------------~~qrLiy~GKiL~-D~~tL~d~gI 64 (397)
|+|+||+++|++|.|+|++++||.+||++|+++.+ +++ ++|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 6699999999
Q ss_pred CCCCEEEEEEeecCCC
Q 015999 65 AENSFVVVMLTKVIRF 80 (397)
Q Consensus 65 ~~gstI~v~v~k~~~~ 80 (397)
++|++|||+.+.+..-
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999887653
No 38
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=6.9e-17 Score=133.54 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=70.4
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CchhhcccCCCCEEEEEEe
Q 015999 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 1 MkI~Vktl~g----k~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~-~tL~d~gI~~gstI~v~v~ 75 (397)
|+|+||+..+ ++|.|+|++++||.+||++|++++| +|+++|||+|+||.|+|+ ++|++|+|+++++|||+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899999754 7999999999999999999999999 999999999999999987 7999999999999999987
Q ss_pred ecCCC
Q 015999 76 KVIRF 80 (397)
Q Consensus 76 k~~~~ 80 (397)
.+..+
T Consensus 85 ~~gg~ 89 (102)
T 1v5o_A 85 DNVGL 89 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 39
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.69 E-value=4.7e-17 Score=133.32 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++|+++.|+|.+++||.+||.+|+++.| +|+++|||+|+||.|+|++||++|+|+++++|+|+++.++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998654
No 40
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=9.3e-17 Score=132.51 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=65.7
Q ss_pred EEEEEeCC----CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 2 KVFVKTLK----GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 2 kI~Vktl~----gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
.|.|+..+ +++|.|+|++++||.+||++|+++.| +|+++|||||+||+|+|++||++|+|++|++|+|+ +.+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl-~lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL-ELK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE-CCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE-EEC
Confidence 36677776 77899999999999999999999999 99999999999999999999999999999999554 444
Q ss_pred C
Q 015999 78 I 78 (397)
Q Consensus 78 ~ 78 (397)
.
T Consensus 93 g 93 (100)
T 1wju_A 93 Q 93 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.2e-16 Score=124.19 Aligned_cols=71 Identities=30% Similarity=0.517 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEe
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~ 75 (397)
|+|+||+ +|+.+.++|++++||.+||.+|++..| +|+++|||+|+||.|+|+++|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 999999999999999999999999999 9999999999999999999999999999999999864
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.68 E-value=1e-16 Score=134.62 Aligned_cols=75 Identities=37% Similarity=0.582 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++|++|.|+|++++||.+||.+|+++.+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998754
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=1.6e-16 Score=129.95 Aligned_cols=76 Identities=37% Similarity=0.570 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+.+|+++.++|++++||.+||.+|++..| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999886643
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=5.8e-17 Score=132.02 Aligned_cols=75 Identities=27% Similarity=0.316 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+. |+.+.++|++++||.+||++|++.++ +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999998 99999999999999999999999999 99999999999999999999999999999999999886653
No 45
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=2e-16 Score=134.05 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=65.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC---CC--CCCCeEEEeCCeecCCCCchhhcccCCCC--EEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENS--FVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~---~i--p~~~qrLiy~GKiL~D~~tL~d~gI~~gs--tI~v~ 73 (397)
|+|+||+++|++++|+|++++||.+||++|+...+++ .+ ++++|||||.||+|+|++||++|+|+.++ +|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 7899999999999999999999999999999843211 14 69999999999999999999999998775 56776
Q ss_pred Eeec
Q 015999 74 LTKV 77 (397)
Q Consensus 74 v~k~ 77 (397)
++..
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 6544
No 46
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=131.06 Aligned_cols=74 Identities=30% Similarity=0.329 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+. |+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 88999999999999999999999999 9999999999999999999999999999999999987654
No 47
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.3e-16 Score=131.61 Aligned_cols=75 Identities=28% Similarity=0.333 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+.+|+ +.|+|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999886 79999999999999999999999 99999999999999999999999999999999999886653
No 48
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.49 E-value=4e-18 Score=132.47 Aligned_cols=75 Identities=27% Similarity=0.378 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+.+|+++.++|++++||.+||.+|++..| +|+++|+|+|+||.|+|+++|++|||++|++|||+++.+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 49
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.9e-16 Score=135.82 Aligned_cols=76 Identities=28% Similarity=0.294 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIRF 80 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~~ 80 (397)
|+|+||+. |+++.|+|++++||.+||++|++++| +++++|||+|+||+|+|+++|++|+|++|++|+|+++.+...
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 78999998 99999999999999999999999999 999999999999999999999999999999999999876543
No 50
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=128.76 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+ |+++.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 7999997 89999999999999999999999999 9999999999999999999999999999999999988653
No 51
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.65 E-value=5.2e-16 Score=139.76 Aligned_cols=77 Identities=35% Similarity=0.513 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIRF 80 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~~ 80 (397)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|++|++|||+++.++..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999977543
No 52
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.3e-16 Score=129.25 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=67.4
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~-~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|+|+|| +.|+.| .|+|++++||.+||.+|++.+| +|+++|||+|+||.|+|+ +|++|+|+++++|+||.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 689999 578999 6999999999999999999999 999999999999999999 99999999999999987644
No 53
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=5.7e-16 Score=129.14 Aligned_cols=74 Identities=23% Similarity=0.156 Sum_probs=68.3
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCCHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCCCchhhcccC
Q 015999 1 MKVFVKTLKG---THFEIEVK--------P-EDKVSDVKKNIETVQ--GSDVYPASQ-QMLIHQGKVLKDVTTLEENKVA 65 (397)
Q Consensus 1 MkI~Vktl~g---k~~~veV~--------~-~~TV~dLK~~I~~~~--g~~~ip~~~-qrLiy~GKiL~D~~tL~d~gI~ 65 (397)
|+|+||+.++ ++|.|+|. + ++||.+||++|+..+ | +|+++ |||||+||.|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 89999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCCEEEEEEeec
Q 015999 66 ENSFVVVMLTKV 77 (397)
Q Consensus 66 ~gstI~v~v~k~ 77 (397)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 54
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=134.78 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=66.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHH------HhCCCCC--CCCCeEEEeCCeecCCCCchhhcccCCCC--EE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIET------VQGSDVY--PASQQMLIHQGKVLKDVTTLEENKVAENS--FV 70 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~------~~g~~~i--p~~~qrLiy~GKiL~D~~tL~d~gI~~gs--tI 70 (397)
|+|+||+++|++++|+|++++||.+||++|++ +.+ + ++++|||||+||+|+|++||++|+|++++ +|
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 68999999999999999999999999999998 445 6 58999999999999999999999999887 56
Q ss_pred EEEEeecC
Q 015999 71 VVMLTKVI 78 (397)
Q Consensus 71 ~v~v~k~~ 78 (397)
||+++.+.
T Consensus 95 hlv~r~~~ 102 (125)
T 2gow_A 95 HLVARETL 102 (125)
T ss_dssp EEEECSCC
T ss_pred EEEecCCC
Confidence 66666543
No 55
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.64 E-value=3e-17 Score=117.36 Aligned_cols=47 Identities=53% Similarity=0.905 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015999 350 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396 (397)
Q Consensus 350 t~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d~~ 396 (397)
||||.++|+||++|||+|..||+||++|+||+++|+||||+++.|++
T Consensus 1 ~~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 1 GSQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 47 (47)
T ss_dssp --CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCCC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCCC
Confidence 67889999999999999999999999999999999999999987653
No 56
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.64 E-value=8.6e-16 Score=128.83 Aligned_cols=75 Identities=37% Similarity=0.582 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++|+.+.++|++++||.+||.+|++..+ +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998654
No 57
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.64 E-value=1.7e-16 Score=114.39 Aligned_cols=49 Identities=57% Similarity=1.000 Sum_probs=47.1
Q ss_pred cccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCCC
Q 015999 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211 (397)
Q Consensus 160 ~l~~g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP~ 211 (397)
+|++|+.+++.|++|++|| |+|++|++|||+++||++||+|||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999995
No 58
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.63 E-value=4.4e-16 Score=131.99 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=67.8
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccC-------CCCEEEE
Q 015999 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA-------ENSFVVV 72 (397)
Q Consensus 1 MkI~Vktl~gk-~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~-------~gstI~v 72 (397)
|.++|+...++ ++.|+|++++||.+||.+|+.+.| +|+++|||||+||+|+|++||++|||+ .+++|||
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 78888887776 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 015999 73 MLT 75 (397)
Q Consensus 73 ~v~ 75 (397)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 59
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=128.72 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=64.2
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCCCchhhc--ccCCCCEEEEE
Q 015999 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ-GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk--~~~veV~~~~TV~dLK~~I~~~~-g~~~ip~~~qrLiy~GKiL~D~~tL~d~--gI~~gstI~v~ 73 (397)
|+|+||+++|+ .++|+|++++||.+||++|+++. |. +|+++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999874 51 446999999999999999999999 99999999984
No 60
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=7.2e-16 Score=132.14 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhC--CCCCCC--CCeEEEeCCeecCCCCchhhcccCCC------CE
Q 015999 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQG--SDVYPA--SQQMLIHQGKVLKDVTTLEENKVAEN------SF 69 (397)
Q Consensus 1 MkI~Vktl~gk~~-~veV~~~~TV~dLK~~I~~~~g--~~~ip~--~~qrLiy~GKiL~D~~tL~d~gI~~g------st 69 (397)
|+|+||+++|+.| .+++++++||.+||++|+...+ +..+|+ ++|||||+||+|+|++||++|+|+++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 6999999999999999965432 112776 89999999999999999999999998 57
Q ss_pred EEEEEeecCC
Q 015999 70 VVVMLTKVIR 79 (397)
Q Consensus 70 I~v~v~k~~~ 79 (397)
+||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888877654
No 61
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.5e-15 Score=128.20 Aligned_cols=76 Identities=33% Similarity=0.509 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
++|+||+++|+++.++|++++||.+||.+|++..| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 47999999999999999999999999999999999 99999999999999999999999999999999999987654
No 62
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.6e-16 Score=130.06 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
|+|+||+ +|+.|.|+|++++||.+||++|++++| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688997 899999999999999999999999999 99999999999999999999999999999999998753
No 63
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.62 E-value=6.1e-16 Score=130.86 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=69.2
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCC-------CCEEEE
Q 015999 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE-------NSFVVV 72 (397)
Q Consensus 1 MkI~Vktl~gk-~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~-------gstI~v 72 (397)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|||++ +++|||
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 78888888777 788999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEee
Q 015999 73 MLTK 76 (397)
Q Consensus 73 ~v~k 76 (397)
++|.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 64
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1e-15 Score=135.37 Aligned_cols=76 Identities=24% Similarity=0.279 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|++|++|||+++.++.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987753
No 65
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.62 E-value=1.3e-15 Score=122.97 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~v-eV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi---y~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
|+|+||. .|++|.| +|++++||.+||.+|++++| +|+++|||+ |+||.|+|+++|++|+|+++++|+||.+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999998753
No 66
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.6e-15 Score=122.51 Aligned_cols=73 Identities=29% Similarity=0.394 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCchhhcccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPE-----DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~-----~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D-~~tL~d~gI~~gstI~v~v 74 (397)
|+|+||+ .|+.+.|+|+++ +||.+||++|++.+| +|+++|||+|+||.|+| +++|++|+|+++++|||+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999995 999999999999999 99999999999999998 6689999999999999987
Q ss_pred eec
Q 015999 75 TKV 77 (397)
Q Consensus 75 ~k~ 77 (397)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1e-15 Score=128.31 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=72.1
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTL---KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl---~gk~~~veV~~-~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
|+|+|++. +|+.+.++|++ ++||.+||.+|+..+| +|+++|||+|+||+|+|+++|++|+|++|++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 89999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred cCC
Q 015999 77 VIR 79 (397)
Q Consensus 77 ~~~ 79 (397)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 68
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=2.4e-15 Score=120.31 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=66.4
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEe
Q 015999 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 3 I~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~ 75 (397)
+++++++|+.|.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 567778999999999999999999999999999 9999999999999999999999999999999999864
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=135.18 Aligned_cols=75 Identities=37% Similarity=0.582 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++|+++.|+|++++||.+||++|++++| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeecccc
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999987543
No 70
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.60 E-value=1.6e-15 Score=138.78 Aligned_cols=76 Identities=36% Similarity=0.536 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|+++.|+|++++||.+||.+|++.+| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+..
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.59 E-value=3e-15 Score=132.39 Aligned_cols=72 Identities=29% Similarity=0.411 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCCCchhhcccCCCCEEEEEEe
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-H-QGKVLKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi-y-~GKiL~D~~tL~d~gI~~gstI~v~v~ 75 (397)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+ | +||.|+|+++|++|+|++|++|+|+++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 79999999999999999999999999999999999 999999999 9 799999999999999999999999987
No 72
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.59 E-value=3.6e-15 Score=124.01 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=68.0
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhccc-CCCCEEEEEEe
Q 015999 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLT 75 (397)
Q Consensus 1 MkI~Vktl~g--k~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI-~~gstI~v~v~ 75 (397)
|+|+|++..+ .+++|+|++++||.+||++|++++| +|+++|||||+||.|+|++||++||| ++|++|||++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899999874 6899999999999999999999999 99999999999999999999999999 59999999985
No 73
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=1.3e-15 Score=124.35 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
|+|+|| +.+++|.|+|++++||.+||++|++.+| +|+++|||+|+||.| |+.+|++|+|+++++|||+.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678998 5789999999999999999999999999 999999999999999 5569999999999999998653
No 74
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=125.31 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=67.8
Q ss_pred EEEEE-eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 2 KVFVK-TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 2 kI~Vk-tl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
.|+|+ ...++.++++++++.||++||++|+.+.+ +|+++|+|||+||+|+|+.||++|||++|.+|||+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45555 55688999999999999999999999999 9999999999999999999999999999999999988644
No 75
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.58 E-value=1.4e-16 Score=136.93 Aligned_cols=76 Identities=36% Similarity=0.542 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|+++.|+|++++||.+||.+|++..| +|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.56 E-value=1.2e-14 Score=126.62 Aligned_cols=73 Identities=38% Similarity=0.627 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
|+|+||+++|+.+.++|++++||.+||++|++.+| +|+++|+|+|+|+.|+|+++|++|+|+++++|+|+.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999864
No 77
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.3e-14 Score=122.25 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=69.7
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEE
Q 015999 1 MKVFVKTL----------KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFV 70 (397)
Q Consensus 1 MkI~Vktl----------~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI 70 (397)
++|+|+.. +|+++.|+|++++||.+||.+|+...| +|+++|||+|+||.|+|+++|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35777765 478999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 015999 71 VVMLTKVIR 79 (397)
Q Consensus 71 ~v~v~k~~~ 79 (397)
||+++.+..
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987754
No 78
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=6.8e-15 Score=132.03 Aligned_cols=75 Identities=37% Similarity=0.582 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|.|+||+++|+++.++|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|+|++|++|||+++.+.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999 9999999999999999999999999999999999988754
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.55 E-value=1.5e-14 Score=126.05 Aligned_cols=75 Identities=37% Similarity=0.582 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+||+++|+.+.++|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.++
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999998654
No 80
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.53 E-value=7.7e-16 Score=136.38 Aligned_cols=77 Identities=35% Similarity=0.513 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIRF 80 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~~ 80 (397)
|+|+||+++|+++.|+|++++||.+||.+|++..| +|+++|||+|+|+.|+|+.+|++|+|++|++|+|+++.+...
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=8.7e-15 Score=118.04 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=63.4
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCCCchhhcccCCCCEEEE
Q 015999 1 MKVFVKTLKGTHF--EI-EVKPEDKVSDVKKNIETV-QGSDVYPASQQMLIHQ--GKVLKDVTTLEENKVAENSFVVV 72 (397)
Q Consensus 1 MkI~Vktl~gk~~--~v-eV~~~~TV~dLK~~I~~~-~g~~~ip~~~qrLiy~--GKiL~D~~tL~d~gI~~gstI~v 72 (397)
|+|+||++.|+.+ .| +|++++||.+||++|++. .+ +++++|||+|. ||+|+|+++|++|+|+++++|||
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998775 58 999999999999999995 67 99999999976 99999999999999999999875
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=119.10 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=65.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhcccCCCCEEEEEEe
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy--~GKiL~D~~tL~d~gI~~gstI~v~v~ 75 (397)
|.+++++++|+++.|+|++++||.+||.+|++++| ||+++|||+| .|+ |+|+++|++|+|+.|++|||++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 56788889999999999999999999999999999 9999999996 566 99999999999999999999764
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.47 E-value=8.2e-14 Score=136.15 Aligned_cols=74 Identities=38% Similarity=0.610 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+||+|+|+++|++|+|+++++|+|++|.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998753
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.44 E-value=9e-14 Score=111.64 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=63.4
Q ss_pred EEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCCCchhhcccCCCCEEEE
Q 015999 2 KVFVKT--LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-------QGKVLKDVTTLEENKVAENSFVVV 72 (397)
Q Consensus 2 kI~Vkt--l~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy-------~GKiL~D~~tL~d~gI~~gstI~v 72 (397)
+|.|.. .+.+.+++.+++++||.+||.+|+.++| +|+++||||| .||.|+|+++|++|+|++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 455543 3556789999999999999999999999 9999999997 489999999999999999999999
Q ss_pred EEee
Q 015999 73 MLTK 76 (397)
Q Consensus 73 ~v~k 76 (397)
+-+.
T Consensus 81 vd~~ 84 (86)
T 4b6w_A 81 VDLQ 84 (86)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8754
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.44 E-value=1.3e-13 Score=114.84 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCCCchhhccc
Q 015999 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-----------V----LKDVTTLEENKV 64 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~-~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GK-----------i----L~D~~tL~d~gI 64 (397)
|+|+||+.+|+. .|+|+ +++||.+||++|+++++ +|+++|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 79999 99999999999999999 9999999999998 4 588999999999
Q ss_pred CCCCEEEEEEe
Q 015999 65 AENSFVVVMLT 75 (397)
Q Consensus 65 ~~gstI~v~v~ 75 (397)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998765
No 86
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.43 E-value=3.8e-13 Score=109.99 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=62.4
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---ec-CCCCchhhcccCCCCEEEE
Q 015999 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GK---VL-KDVTTLEENKVAENSFVVV 72 (397)
Q Consensus 1 MkI~Vktl~g--k~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~--GK---iL-~D~~tL~d~gI~~gstI~v 72 (397)
++|+|++..+ +.++++|++++||.+||++|+..+| +|+++|||+|. || .| +|+++|++|+|++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3678887655 4789999999999999999999999 99999999998 55 34 8999999999999999998
Q ss_pred E
Q 015999 73 M 73 (397)
Q Consensus 73 ~ 73 (397)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 87
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.43 E-value=3.9e-13 Score=115.34 Aligned_cols=42 Identities=29% Similarity=0.481 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC-CCC
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH-EFE 396 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~-d~~ 396 (397)
+.|++|++|||+|+.|++||.+|++|++.|++|||++.. |.+
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~~d~~ 122 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEED 122 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCccC
Confidence 459999999999999999999999999999999999877 443
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.39 E-value=2.6e-14 Score=130.40 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+++|++|+|+|++++||.+||.+|+...| ||+++|||||+|++|+|+.+|+ ++++|||+++.+..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 9999999999999999999998 89999999987643
No 89
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=8.9e-13 Score=108.21 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=62.4
Q ss_pred EEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe---e----cCCCCchhhcccCCCCEEEE
Q 015999 2 KVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK---V----LKDVTTLEENKVAENSFVVV 72 (397)
Q Consensus 2 kI~Vktl~g--k~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GK---i----L~D~~tL~d~gI~~gstI~v 72 (397)
+|+|+.... +.++++|++++||.+||.+|+.++| +|+++|||+|.|| . ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 577776443 5789999999999999999999999 9999999999883 3 48899999999999999998
Q ss_pred EEe
Q 015999 73 MLT 75 (397)
Q Consensus 73 ~v~ 75 (397)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 90
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.2e-12 Score=106.62 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=63.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhcccCCCCEEEE
Q 015999 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (397)
Q Consensus 1 MkI~Vktl~gk-~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~G---Ki----L~D~~tL~d~gI~~gstI~v 72 (397)
++|+|+..... .++++|++++||.+||.+|+..+| +|+++|||+|.| |. |+|+++|++|||++|++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36788876543 689999999999999999999999 999999999986 54 58999999999999999998
Q ss_pred EEe
Q 015999 73 MLT 75 (397)
Q Consensus 73 ~v~ 75 (397)
+..
T Consensus 85 ~d~ 87 (95)
T 1v6e_A 85 IDH 87 (95)
T ss_dssp BCC
T ss_pred EEC
Confidence 753
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.35 E-value=1.1e-12 Score=104.71 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=63.6
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CCCchhhcccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GKVLK---DVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk~~~ve-V~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~--GKiL~---D~~tL~d~gI~~gstI~v~v 74 (397)
|+|+||+.+|+. .++ |++++||.+||.+|+++.| +++++|+|+|+ +|.|+ |+++|++|||++|++|||..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999965 477 9999999999999999999 99999999987 48874 68899999999999998864
Q ss_pred e
Q 015999 75 T 75 (397)
Q Consensus 75 ~ 75 (397)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=3.9e-12 Score=103.74 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+||+.+|+.+.+.|.+++++..||++++++.| ++++++||+|.|+.|.+++|+++|++.++++|+|+++.+..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999999987654
No 93
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.28 E-value=2.3e-12 Score=126.88 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=65.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi---y~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
|+|+|| ++|++|.|+|++++||.+||++|++++| +|+++|||| |+||+|+|+.+|++|+|++|++|+||.+.
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 578899 6899999999999999999999999999 999999999 89999999999999999999999998653
No 94
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.28 E-value=4.2e-12 Score=88.76 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=38.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 209 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GI 209 (397)
.|+.|++|++|| |+|++|++||++++||+++|++||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 368899999999 9999999999999999999999999986
No 95
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.27 E-value=9.2e-12 Score=106.07 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=63.7
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCchhhcccCCCCEEEE
Q 015999 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (397)
Q Consensus 1 MkI~Vktl~gk-~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~G---Ki----L~D~~tL~d~gI~~gstI~v 72 (397)
|+|+|+...+. .++++|++++||.+||.+|+..+| +|+++|||+|.| +. ++|+++|++|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46788876553 688999999999999999999999 999999999987 43 48999999999999999999
Q ss_pred EEee
Q 015999 73 MLTK 76 (397)
Q Consensus 73 ~v~k 76 (397)
+...
T Consensus 84 vd~~ 87 (122)
T 1t0y_A 84 VDVT 87 (122)
T ss_dssp EECT
T ss_pred EeCC
Confidence 8743
No 96
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.26 E-value=7.5e-12 Score=97.35 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=42.8
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHcCCCCC
Q 015999 164 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 212 (397)
Q Consensus 164 g~~~e~~I~~i~~MG~~~f-~r~~v~~ALrAafnNpdrAveyL~~GIP~~ 212 (397)
...+++.|++|++|| | +|+.+++||+++++|++||||||++|||+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 467899999999999 9 899999999999999999999999998853
No 97
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.25 E-value=2.3e-11 Score=94.09 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=68.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
|+|+|++.+|+.+.+.|.+++++..|+..++++.| +++..+||+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999873
No 98
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.25 E-value=7.1e-12 Score=97.34 Aligned_cols=44 Identities=36% Similarity=0.389 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCC
Q 015999 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210 (397)
Q Consensus 164 g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP 210 (397)
...+++.|++||+|| |+|++|++|||+++||++||+|||++|+.
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 356789999999999 99999999999999999999999999943
No 99
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.24 E-value=4.5e-11 Score=101.31 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 353 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 353 e~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
....|.+|++|||++.++..||..|++|.+.|++|||..
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 446799999999999999999999999999999999964
No 100
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.23 E-value=9.2e-12 Score=88.36 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=37.7
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 166 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f-~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
.++..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 6 ~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 6 RYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4789999999999 9 78999999999999999999999986
No 101
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=3e-11 Score=97.95 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+|++.+|+.+.+.|.+++++..||+.++++.| +++.++||+|.|+.|.++.|.++|++.+|++|+|++...+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 102
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.21 E-value=7.2e-11 Score=93.06 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=67.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk-~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
|+|+|++.+|+ .+.+.|.+++++..|+..++++.| ++++++||+|.|+.|.+++|.++|++.+|++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57999999996 899999999999999999999999 99999999999999999999999999999999986
No 103
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.20 E-value=1.9e-11 Score=85.35 Aligned_cols=37 Identities=38% Similarity=0.557 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
++|++|++|||+|+.+++||.+|++|++.|++|||++
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 6799999999999999999999999999999999986
No 104
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.19 E-value=1.9e-11 Score=89.30 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHcCCC
Q 015999 165 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 210 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f-~r~~v~~ALrAafnNpdrAveyL~~GIP 210 (397)
..+++.|++|++|| | +|+.|++||++++||++||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 45889999999999 9 9999999999999999999999999865
No 105
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.18 E-value=2.7e-11 Score=96.10 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=41.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHc--C-CCCCCC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS--G-IPEQTA 214 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~--G-IP~~~~ 214 (397)
.+..|++||+|| |+|++|++|||+++||++||+|||++ | ||+.+.
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~~ 76 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDLQ 76 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTSS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhhh
Confidence 578999999999 99999999999999999999999999 7 886643
No 106
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.18 E-value=6.6e-11 Score=96.19 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|+|+|++.+|+.+.+.|.+++++..|+..++++.| ++++.+||+|.|+.|.++.|+++|++.++++|+|+++..
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57889988999999999999999999999999999 999999999999999999999999999999999998754
No 107
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=7.3e-11 Score=97.97 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+|++.+|+.+.+.|.+++++..|+..++++.| ++++.+||+|.|+.|.++.|+++|++.++++|+|++....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 108
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.14 E-value=4.6e-11 Score=90.34 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCCC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP~ 211 (397)
.++.|++|++|| |+|++|++|||+++||++||+|||+++...
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 578999999999 999999999999999999999999999543
No 109
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.13 E-value=5.2e-11 Score=86.65 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 165 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f-~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
..++..|++|++|| | +|+.|++||++++||++||||||++|
T Consensus 10 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56889999999999 9 99999999999999999999999976
No 110
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.11 E-value=1.3e-10 Score=97.46 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+|++.+|+.+.+.|.+++++..||..++++.| ++++++||+|.|+.|.+++|+++|++.++++|+|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 57999999999999999999999999999999999 9999999999999999999999999999999999987543
No 111
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.11 E-value=8e-11 Score=89.64 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHcCCCCC
Q 015999 165 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 212 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f-~r~~v~~ALrAafnNpdrAveyL~~GIP~~ 212 (397)
..|+..|.+|++|| | +|+.+++|||++++|++||||||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 35788999999999 9 788889999999999999999999998863
No 112
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.10 E-value=6.9e-11 Score=87.84 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 165 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f-~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
..+++.|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 15 ~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45789999999999 9 79999999999999999999999988
No 113
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.08 E-value=2.2e-10 Score=95.31 Aligned_cols=73 Identities=11% Similarity=0.180 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|+|+|++ +|+.+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|.++|++.++++|+|+++..
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5789999 999999999999999999999999999 999999999999999999999999999999999998754
No 114
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.1e-11 Score=88.97 Aligned_cols=44 Identities=39% Similarity=0.655 Sum_probs=40.7
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCCCC
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP~~ 212 (397)
-.+..|++|++|| |+|++|++|||+++||++||+|||++++++.
T Consensus 8 ~~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 8 PPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CCHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 3578999999999 9999999999999999999999999997753
No 115
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.05 E-value=1.3e-10 Score=87.83 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015999 354 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 395 (397)
Q Consensus 354 ~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d~ 395 (397)
.++|++|++|||+|++|++||.+|++|++.|++|||++..+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 467999999999999999999999999999999999986543
No 116
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.04 E-value=3.5e-10 Score=80.21 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=38.4
Q ss_pred CHHHH--HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 350 TPEER--EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 350 t~Ee~--~ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
.||++ ..|++|++||| +|+.|++||.+|++|++.|++|||++
T Consensus 2 ~p~~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 2 DPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp CHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred CHhHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 57776 67999999999 79999999999999999999999974
No 117
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.04 E-value=2.8e-10 Score=83.07 Aligned_cols=44 Identities=32% Similarity=0.501 Sum_probs=39.7
Q ss_pred CCHHHH--HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015999 349 VTPEER--EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 392 (397)
Q Consensus 349 lt~Ee~--~ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L~~~~ 392 (397)
.+||++ +.|++|++||| +|+.|++||.+|++|++.|++|||++.
T Consensus 5 ~~pe~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 5 SMPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp CCTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred CChhhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 356665 56999999999 999999999999999999999999874
No 118
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.03 E-value=2.6e-10 Score=88.73 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP 210 (397)
.++.|++|++|| |+|++|++|||+++||++||||||+++..
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 478999999999 99999999999999999999999998843
No 119
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.01 E-value=2.9e-10 Score=82.69 Aligned_cols=42 Identities=36% Similarity=0.554 Sum_probs=38.1
Q ss_pred CHHHH--HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 350 TPEER--EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 350 t~Ee~--~ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
+||++ ..|++|++||| +|+.|++||.+|++|++.|++|||++
T Consensus 7 ~p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 7 NPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp STTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CchhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 44444 67999999999 99999999999999999999999986
No 120
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.01 E-value=1.8e-10 Score=87.36 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=41.4
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHcCCCCC
Q 015999 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 212 (397)
Q Consensus 164 g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafn-NpdrAveyL~~GIP~~ 212 (397)
+...|..|++|++|| |+|+.|++||++++| |+++|+|||+.++++.
T Consensus 6 ~~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 6 SGSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CCCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 344577899999999 999999999999999 9999999999998753
No 121
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.01 E-value=3.3e-10 Score=83.88 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=45.2
Q ss_pred cccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015999 346 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 393 (397)
Q Consensus 346 ~~~lt~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~ 393 (397)
...|++.|.++|+.|++|||++++++.|+-+|++|+|.|++|||+|+.
T Consensus 12 l~~ls~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 12 LQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHhhCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 356899999999999999999999999999999999999999999865
No 122
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.00 E-value=3.7e-10 Score=77.27 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 015999 165 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~ 206 (397)
+++++.|++|++|| |+|+++++||+++.+|+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 35788999999999 9999999999999999999999995
No 123
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.00 E-value=3.9e-10 Score=85.50 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 396 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~k-ne~~Aan~L~~~~~d~~ 396 (397)
+.|++|++|||+++.+++||.+|++ |++.|+||||++..|.|
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 5699999999999999999999997 99999999999877654
No 124
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.99 E-value=1e-09 Score=89.35 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=61.5
Q ss_pred EEEEEe---CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCCCchhhcccCCCCEE
Q 015999 2 KVFVKT---LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG------KV-L-KDVTTLEENKVAENSFV 70 (397)
Q Consensus 2 kI~Vkt---l~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~G------Ki-L-~D~~tL~d~gI~~gstI 70 (397)
+|+|+. .+++.+++.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|.++|++|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566775 4678899999999999999999999999 999999999873 22 5 67789999999999999
Q ss_pred EEEEe
Q 015999 71 VVMLT 75 (397)
Q Consensus 71 ~v~v~ 75 (397)
||...
T Consensus 88 ~V~d~ 92 (97)
T 1wjn_A 88 LVRWS 92 (97)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99864
No 125
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.99 E-value=4e-10 Score=87.47 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=42.2
Q ss_pred ccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015999 347 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 393 (397)
Q Consensus 347 ~~lt~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~ 393 (397)
.+.+++..++|++|++|||+|++|++||.+|++|++.|++|||++..
T Consensus 23 ~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 45666667889999999999999999999999999999999998743
No 126
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=4.8e-10 Score=87.41 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHcCCCCC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 212 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafn-NpdrAveyL~~GIP~~ 212 (397)
.+..|++|++|| |+|++|++|||+++| |+++|+|||++++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 478999999999 999999999999997 7999999999998764
No 127
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.98 E-value=4.3e-10 Score=76.91 Aligned_cols=39 Identities=33% Similarity=0.488 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHh
Q 015999 351 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 389 (397)
Q Consensus 351 ~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~ 389 (397)
|+..++|++|++|||+++.+++||.+|++|++.|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 445568999999999999999999999999999999997
No 128
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.98 E-value=8.6e-10 Score=83.94 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=44.0
Q ss_pred cccCCHHHH--HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015999 346 AVTVTPEER--EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 395 (397)
Q Consensus 346 ~~~lt~Ee~--~ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L~~~~~d~ 395 (397)
.....||++ .+|++|++||| +|+.|++||.+|++|++.|++|||++..+.
T Consensus 10 ~~~~~pe~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 10 HSLQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp CSSCCHHHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred CCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 445678887 67999999999 899999999999999999999999986553
No 129
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.98 E-value=5e-10 Score=80.42 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015999 351 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392 (397)
Q Consensus 351 ~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~ 392 (397)
++..+.|++|++|||+|+.++.||.+|++|++.|++|||++.
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gi 47 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 47 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 455678999999999999999999999999999999999863
No 130
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.97 E-value=3.5e-10 Score=85.75 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHcCCC
Q 015999 168 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIP 210 (397)
Q Consensus 168 e~~I~~i~~MG~~~f~r~~v~~ALrAafn-NpdrAveyL~~GIP 210 (397)
+..|++|++|| |+|++|++|||++.| |+++|+|||++++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 57899999999 999999999999998 99999999998854
No 131
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.96 E-value=8.1e-10 Score=88.28 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015999 354 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396 (397)
Q Consensus 354 ~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d~~ 396 (397)
.++|++|++|||+|+.|++||.+|++|++.|++|||+|..|.|
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 4679999999999999999999999999999999999988866
No 132
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=5.2e-10 Score=79.58 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
.+..|++|++|| |+|++|++|||++ ||+++|+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 578999999999 9999999999999 6999999999864
No 133
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.95 E-value=4.5e-10 Score=85.13 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhc-CChHHHHHHHHcCCCCC
Q 015999 168 EATVQQILDMGGGSWDRETVIRALRAAY-NNPERAVEYLYSGIPEQ 212 (397)
Q Consensus 168 e~~I~~i~~MG~~~f~r~~v~~ALrAaf-nNpdrAveyL~~GIP~~ 212 (397)
+..|++|++|| |+|++|++|||+++ +|+++|++||++++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 46899999999 99999999999995 89999999999998753
No 134
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.94 E-value=7.5e-10 Score=83.93 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015999 355 EAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 396 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac-~kne~~Aan~L~~~~~d~~ 396 (397)
+.|++|++|||+|..+++||++| ++|++.|++|||++..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d 53 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPD 53 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcc
Confidence 46999999999999999999999 7999999999999877654
No 135
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=7.6e-10 Score=86.27 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015999 354 REAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 396 (397)
Q Consensus 354 ~~ai~rL~~lGF~r~~~iqAy~ac~k-ne~~Aan~L~~~~~d~~ 396 (397)
.+.|++|++|||+|+.+++||++|++ |+|.|+||||++..|.+
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 35699999999999999999999995 89999999999877654
No 136
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=8.3e-10 Score=87.87 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015999 354 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 396 (397)
Q Consensus 354 ~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d~~ 396 (397)
.+.|++|++|||+++.+++||.+|++|++.|+||||++..|.+
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d 72 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPT 72 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCST
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 3569999999999999999999999999999999999876644
No 137
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.92 E-value=1.2e-09 Score=78.20 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
++|++|++|||+|+.||+||..|++|+++|+|+|++-
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 6799999999999999999999999999999999984
No 138
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.91 E-value=2e-09 Score=79.87 Aligned_cols=45 Identities=27% Similarity=0.357 Sum_probs=40.4
Q ss_pred cCCHHHH--HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015999 348 TVTPEER--EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 392 (397)
Q Consensus 348 ~lt~Ee~--~ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L~~~~ 392 (397)
...+|++ +.|++|++||| +|+.|++||.+|++|++.|++|||++.
T Consensus 10 ~~~pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 10 ILDPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp GGSHHHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 4467776 67999999999 799999999999999999999999864
No 139
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.90 E-value=1.3e-09 Score=82.68 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 396 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~k-ne~~Aan~L~~~~~d~~ 396 (397)
+.|++|++|||+|+.|++||++|++ |++.|+||||+|..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d 53 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPS 53 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 3599999999999999999999976 99999999999987643
No 140
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.89 E-value=1.6e-09 Score=84.18 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015999 353 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 395 (397)
Q Consensus 353 e~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d~ 395 (397)
+.+.|++|++|||+|+.+++||.+|++|++.|++|||++..|.
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 3467999999999999999999999999999999999987654
No 141
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=9e-10 Score=83.18 Aligned_cols=42 Identities=24% Similarity=0.536 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015999 354 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 395 (397)
Q Consensus 354 ~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d~ 395 (397)
.+.|++|++|||+|+.+++||.+|++|++.|++|||++..|.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 356999999999999999999999999999999999986554
No 142
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.1e-09 Score=85.56 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=40.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCCCC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 212 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP~~ 212 (397)
.+..|++|++|| |+|++|++|||++++|+++|+|||++++.+.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 578999999999 9999999999999999999999999997653
No 143
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.86 E-value=1.7e-09 Score=86.25 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=39.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHHcCCCCC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 212 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafn-NpdrAveyL~~GIP~~ 212 (397)
.+..|++|++|| |+|++|++|||+++| |+++|++||++++++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 478999999999 999999999999985 9999999999998753
No 144
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.84 E-value=2.5e-09 Score=79.14 Aligned_cols=38 Identities=29% Similarity=0.616 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 168 e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
++.|..|++|| |.++|+.+||++.-||.|||+|||.+-
T Consensus 20 ~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 20 RQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 67799999999 999999999999999999999999975
No 145
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.5e-09 Score=76.05 Aligned_cols=37 Identities=32% Similarity=0.581 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~ 392 (397)
+.|++|++|||+++.+++||.+|+ |+|.|++|||+|.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 569999999999999999999996 9999999999873
No 146
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.81 E-value=4e-09 Score=75.90 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
..|++|++|||+|+.|++||..|++|+|+|+|+|++.
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3499999999999999999999999999999999975
No 147
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.80 E-value=5.3e-09 Score=76.57 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=36.3
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015999 355 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 394 (397)
Q Consensus 355 ~ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L~~~~~d 394 (397)
+.|++|++||| +++.+++||.+|++|++.|++|||++...
T Consensus 11 ~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 11 VQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 56999999999 77789999999999999999999987643
No 148
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.79 E-value=6.7e-09 Score=80.72 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=39.8
Q ss_pred CCHHHH--HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015999 349 VTPEER--EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 394 (397)
Q Consensus 349 lt~Ee~--~ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L~~~~~d 394 (397)
..||++ +.|++|++||| +|+.|++||.+|++|++.|++|||++...
T Consensus 23 ~~pe~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 23 LFTEGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp GGTTTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred CCchHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 344553 67999999999 89999999999999999999999997544
No 149
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.78 E-value=5.7e-09 Score=82.75 Aligned_cols=40 Identities=33% Similarity=0.383 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d 394 (397)
+.|++|++|||+|+.|+.||.+|++|++.|++|||+|..+
T Consensus 31 e~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 31 ESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 5699999999999999999999999999999999997653
No 150
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.77 E-value=6e-09 Score=76.28 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=37.1
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHcCC
Q 015999 166 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGI 209 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f-~r~~v~~ALrAafnNpdrAveyL~~GI 209 (397)
.+++.|++|++|| | +|+.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5788999999999 9 556689999999999999999999874
No 151
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.77 E-value=7e-09 Score=88.71 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP 210 (397)
.+..|++|++|| |+|++|++|||+++||++||+|||+++++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 578999999999 99999999999999999999999999987
No 152
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.76 E-value=6.1e-09 Score=83.07 Aligned_cols=43 Identities=30% Similarity=0.455 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015999 354 REAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 396 (397)
Q Consensus 354 ~~ai~rL~~lGF~r~~~iqAy~ac-~kne~~Aan~L~~~~~d~~ 396 (397)
.++|++|++|||+|+.|++||++| ++|++.|+||||+|..|.+
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence 467999999999999999998877 5899999999999877654
No 153
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.75 E-value=8.5e-09 Score=85.70 Aligned_cols=43 Identities=35% Similarity=0.514 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHcCCC
Q 015999 165 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 210 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f-~r~~v~~ALrAafnNpdrAveyL~~GIP 210 (397)
..+++.|++|++|| | +|+.+++||+++++|++||||||++|.+
T Consensus 64 ~~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 64 SQWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp CTTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 35789999999999 9 8899999999999999999999999854
No 154
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.75 E-value=3.4e-08 Score=83.18 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
|+|+|++.+|+.+.+.|..++++..|+...+++.| ++...+||+|.|+.|.++.|.+++++.+||+|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46888888899899999999999999999999999 99999999999999999999999999999999998753
No 155
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.69 E-value=1.6e-08 Score=80.74 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 168 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 168 e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
+..|++|++|| |+|++|++||++.++|+++|+|||++.
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 78899999999 999999999999999999999999987
No 156
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.66 E-value=2.5e-08 Score=71.88 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 354 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 354 ~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
.++|.+|++|||+|+.+++||..|+.|+|+|.|+|++-
T Consensus 8 e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 35799999999999999999999999999999999984
No 157
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.57 E-value=1.3e-08 Score=72.39 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=38.4
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCC
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 209 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GI 209 (397)
+-+++|++|++|| |+|.+|++||.+.-+|.++|++||+++.
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578999999999 9999999999999999999999999874
No 158
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.52 E-value=1.1e-07 Score=66.07 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
..|.+|++|||+++.|++||.-|+.|+|+|.|.|++.
T Consensus 6 ~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 6 SEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 5699999999999999999999999999999999975
No 159
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.51 E-value=1.2e-07 Score=67.94 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHc
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~ 207 (397)
.+..|+.||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 457999999999 99999999999999999999999873
No 160
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.2e-07 Score=84.29 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIRF 80 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~~ 80 (397)
++|+|+ .+|+.+.+.|.+++++..||+.++++.| ++..++||+|.|+.|.++.|.+++++.+||+|+|+.......
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467787 4888999999999999999999999999 999999999999999999999999999999999998876544
No 161
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.49 E-value=1.2e-07 Score=78.85 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015999 354 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMH 393 (397)
Q Consensus 354 ~~ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L~~~~~ 393 (397)
.+.|++|++||| +|+.+++||.+|++|++.|++|||+++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 367999999999 8899999999999999999999998753
No 162
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.47 E-value=1e-07 Score=75.15 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=57.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV---L--KDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKi---L--~D~~tL~d~gI~~gstI~v~ 73 (397)
|.|.||+.+| .+.|+|++++||.+||.+|.+.++ ++++.+.|.++-.. | .++.+|+++||++||.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998877 778999999999999999999999 88888777554332 3 47789999999999999874
No 163
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.46 E-value=7.1e-08 Score=70.15 Aligned_cols=47 Identities=26% Similarity=0.218 Sum_probs=40.6
Q ss_pred CCHHHHH--HHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015999 349 VTPEERE--AIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 395 (397)
Q Consensus 349 lt~Ee~~--ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L~~~~~d~ 395 (397)
+.|||+. .|++|.+||| |++.+++|+..|++|++.|++.|+.....|
T Consensus 3 ~~~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 3 SGSSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp CSSCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred CCHHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 3466664 5999999999 999999999999999999999999865544
No 164
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.46 E-value=2.1e-07 Score=84.54 Aligned_cols=75 Identities=11% Similarity=0.138 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
|+|+|+ .+|+.+.+.|..++++..|++..+++.| +++..+||+|.|+.|.+++|.+++++.++|+|.|++.....
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 357776 4888999999999999999999999999 99999999999999999999999999999999999876553
No 165
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.46 E-value=2e-07 Score=67.03 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=36.1
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHc
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~ 207 (397)
..|..|..||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 8 ~~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 8 QLSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp CSHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567799999999 99999999999999999999999974
No 166
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.40 E-value=4.3e-07 Score=63.13 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=38.5
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHc
Q 015999 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207 (397)
Q Consensus 164 g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~ 207 (397)
|+.+|..|..||+|| |+|++|++||-.|-||.+-|-+.|..
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999973
No 167
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.39 E-value=3.3e-07 Score=77.51 Aligned_cols=45 Identities=31% Similarity=0.510 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015999 348 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 392 (397)
Q Consensus 348 ~lt~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~ 392 (397)
.|+|+|++.|++|.+|||++..|+.|+.+|+.|.+.|.||||.++
T Consensus 3 ~l~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 3 HMSPSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp CSCHHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999874
No 168
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.36 E-value=3.2e-07 Score=84.37 Aligned_cols=75 Identities=27% Similarity=0.282 Sum_probs=55.4
Q ss_pred hCHHHHHHHHHhHHHHHHHhcCCCCCCCCcccccccccCCCcccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 015999 305 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384 (397)
Q Consensus 305 ~nP~l~~~I~~n~~~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~A 384 (397)
.|++.+++.+.|.+.|.+...+-... .+. .....++-.+.|++|++|||+|+.+++||..|++|++.|
T Consensus 127 ~n~~aa~~~~~~~~~f~~~a~~~~~~--------~a~----~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A 194 (201)
T 3k9o_A 127 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETA 194 (201)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHH
T ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccccchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 37778888888888887764322100 000 011233445789999999999999999999999999999
Q ss_pred HHHHhcc
Q 015999 385 ANYLLDH 391 (397)
Q Consensus 385 an~L~~~ 391 (397)
+++||++
T Consensus 195 ~e~L~~~ 201 (201)
T 3k9o_A 195 TELLLSN 201 (201)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999974
No 169
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.28 E-value=8e-07 Score=64.05 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=36.8
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
..|..|..||+|| |+|++|++||+.+-||.+-|-++|+.=
T Consensus 6 p~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 6 QLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3578999999999 999999999999999999999999853
No 170
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.28 E-value=4.6e-06 Score=64.93 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=64.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCCCchhhcccCCCCEEEEEE
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~-~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
.+.+++.+...+.+.|.++.+|.+|-+..+.+.+ |+.+ .++|.|.|..|+.+.++.+|.+.+||.|-||+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4567777777899999999999999999999999 9999 99999999999999999999999999999885
No 171
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.16 E-value=2.5e-07 Score=85.09 Aligned_cols=74 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
|+|+| +.+|+.+.+.|..++++..|++..+++.| ++++.+|++|.|+.|.+++|.+++++.+||+|.|+....+
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 56777 66888889999999999999999999999 9999999999999999999999999999999999987654
No 172
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.13 E-value=4e-06 Score=68.86 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015999 352 EEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMH 393 (397)
Q Consensus 352 Ee~~ai~rL~~l-GF~r~~~iqAy~ac~kne~~Aan~L~~~~~ 393 (397)
+-.+.|++|++| ||+++.++.||..|++|++.|+++||+...
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 334669999999 999999999999999999999999998764
No 173
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.12 E-value=1.2e-05 Score=65.68 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=63.6
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk-~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
++|+|+.-+|+ .+.+.|..+.++..|....+++.| +++...||+|.|..|..+.|..++++.+||+|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35777777774 788999999999999999999999 88999999999999999999999999999999875
No 174
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.11 E-value=2.1e-06 Score=78.95 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=40.3
Q ss_pred cCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHc
Q 015999 162 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207 (397)
Q Consensus 162 ~~g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~ 207 (397)
..+..+++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 45678899999999999 99999999999999999999999985
No 175
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.10 E-value=2.7e-06 Score=80.94 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=57.6
Q ss_pred hCHHHHHHHHHhHHHHHHHhcCCCCCCCCcccccccccCCCcccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 015999 305 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 384 (397)
Q Consensus 305 ~nP~l~~~I~~n~~~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~~A 384 (397)
.|++.+++++.|.+.|.+...+-... .+. .....++-.+.|++|++|||+|+.+++||..|++|++.|
T Consensus 179 ln~eaa~l~~~d~~~f~~~ar~~t~~--------yA~----~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A 246 (253)
T 3e46_A 179 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETA 246 (253)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHH
T ss_pred hhHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 47888999999999998875432100 000 112244556789999999999999999999999999999
Q ss_pred HHHHhcc
Q 015999 385 ANYLLDH 391 (397)
Q Consensus 385 an~L~~~ 391 (397)
.++||++
T Consensus 247 ~e~L~~~ 253 (253)
T 3e46_A 247 TELLLSN 253 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999974
No 176
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.00 E-value=7.9e-06 Score=67.11 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCCC
Q 015999 165 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 211 (397)
Q Consensus 165 ~~~e~~I~~i~~M-G~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP~ 211 (397)
.+++..|+.|++| | |++++|+.||..+.++.++|++||+.|.|+
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3578999999999 9 999999999999999999999999999884
No 177
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.91 E-value=4.3e-06 Score=83.59 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015999 353 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394 (397)
Q Consensus 353 e~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d 394 (397)
..++|++|++|||+|+.|+.||.+|++|.+.|++|||++..|
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 346799999999999999999999999999999999987654
No 178
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.86 E-value=5.4e-05 Score=61.32 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=51.8
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--CCCCchhhccc-CCCCEEEEE
Q 015999 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL--KDVTTLEENKV-AENSFVVVM 73 (397)
Q Consensus 3 I~Vktl-~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL--~D~~tL~d~gI-~~gstI~v~ 73 (397)
|.|=.+ ..+.++|.+.+++||..||++|++++| |++++|+|+|.||.| +.++.-..|-- ....-|+|+
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 334444 467788999999999999999999999 999999999999875 45566666643 334445544
No 179
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.80 E-value=0.0001 Score=59.68 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=65.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEee
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
+.|+|+ .+|..+.+.+..+.....|.+..+++.| +.++..|++|.|..+.++.|-.++++.++|+|.+++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 357788 4788888999999999999999999999 99999999999999999999999999999999998754
No 180
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.78 E-value=4.3e-05 Score=70.53 Aligned_cols=73 Identities=11% Similarity=0.148 Sum_probs=66.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
.|+|++ +++.+.+.|..++++..||+..+++.| ++.+++||+|.|+.+.+++|..++.+.++++|.++.....
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 567776 677888999999999999999999999 9999999999999999999999999999999999876655
No 181
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.78 E-value=2.1e-05 Score=57.09 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=38.6
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 164 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 164 g~~~e~~I~~i~~MG~~~f-~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
-..+...+.+|.+|| | +++..++|||...+|.++||+.|+++
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 355777999999999 9 99999999999999999999999975
No 182
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.76 E-value=9e-05 Score=59.41 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
|.|+|...+++.++|.|.++.++.++-+..++++| +.+++..|.|++|.|+-+..+.-.||.+|.+|.++.+.+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 67899999999999999999999999999999999 889999999999999889999999999999999876543
No 183
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.72 E-value=2.6e-05 Score=69.80 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=38.8
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 164 g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
.++.+++|++|++|| |+|+.|++|+.++.+|.+.|++||+++
T Consensus 127 tpee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 127 TPEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 355678899999999 999999999999999999999999976
No 184
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.69 E-value=5.9e-05 Score=59.47 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=58.6
Q ss_pred EEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhcccCCCCEEEE
Q 015999 2 KVFVKT--LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (397)
Q Consensus 2 kI~Vkt--l~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~--~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v 72 (397)
+|+|.. ..++.|.+++....||+.|+..+.+.++-...+. ...|+.-+|.+|.+++.|.+|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 466664 5789999999999999999999999988331111 2457788999999999999999999999876
No 185
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.61 E-value=0.0001 Score=62.96 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=56.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------------------------------------QQ 44 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~-------------------------------------~q 44 (397)
.|+|+.++|...++.|+.+.||.+++..|+.+.| |+.. ++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3899999999999999999999999999999999 6533 34
Q ss_pred EEEe--CCeecCCCCchhhcccCCCCEEEE
Q 015999 45 MLIH--QGKVLKDVTTLEENKVAENSFVVV 72 (397)
Q Consensus 45 rLiy--~GKiL~D~~tL~d~gI~~gstI~v 72 (397)
||-. .+.-|+++++|.++||.++++|.|
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 4422 235678899999999999999755
No 186
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.60 E-value=8.6e-06 Score=80.87 Aligned_cols=74 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecC
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVI 78 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~ 78 (397)
++|+|++ +|+.+.+.|..++++..|++..+++.| ++++.+|++|.|+.|.++.|.+++++++||+|.|+.....
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 3567776 677788899999999999999999999 9999999999999999999999999999999999987543
No 187
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.33 E-value=3e-05 Score=77.69 Aligned_cols=74 Identities=9% Similarity=0.133 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeecCC
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKVIR 79 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~~~ 79 (397)
.|+|+. +++...+.|..++++..||+..+++.| ++..++|++|.|+.|.+++|.+++++.+|++|.++......
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 466665 667778899999999999999999999 99999999999999999999999999999999999876543
No 188
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.29 E-value=0.0004 Score=76.44 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015999 355 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 394 (397)
Q Consensus 355 ~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~~~d 394 (397)
+.|..|.+|||++.+++.||.+|++|.+.|++|||++..|
T Consensus 722 e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~ 761 (854)
T 3ihp_A 722 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 761 (854)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccc
Confidence 3488899999999999999999999999999999997544
No 189
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.27 E-value=0.0012 Score=51.88 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=58.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CCCchhhcccCCCCEEEEE
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK---DVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--y~GKiL~---D~~tL~d~gI~~gstI~v~ 73 (397)
+|.||..+|+.+.-.+..++||.+|..-|.. .+ ++....+|+ |-.|.|. .+++|+++|+.++.+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5889999999888889999999999999987 56 667888998 5578883 4689999999999988874
No 190
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.20 E-value=0.00043 Score=49.83 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=33.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-ChHHHHHHHH
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLY 206 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafn-NpdrAveyL~ 206 (397)
.-+.++.|++|| |+++-|++||+.+-| ..+-|+|||.
T Consensus 9 n~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 9 NRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 357799999999 999999999999987 7999999996
No 191
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.11 E-value=0.0036 Score=51.79 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=59.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCchhhcccCCCCEEEEEEe
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--D-VTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--y~GKiL~--D-~~tL~d~gI~~gstI~v~v~ 75 (397)
+|.||..+|+.+.-.+..++||.+|..-|....+ .+.....|+ |--|.|. | ++||+++|+.+..+|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6889999999999999999999999999988877 566778886 5678886 3 68999999999888776543
No 192
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.03 E-value=0.00059 Score=64.80 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=40.7
Q ss_pred ccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHc
Q 015999 161 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207 (397)
Q Consensus 161 l~~g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~ 207 (397)
-+.+.++++.|++|++|| |+|++|+.||+..-.|-++|+|||+.
T Consensus 209 ~~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 209 PVSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp SCCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 345678999999999999 99999999999999999999999985
No 193
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.63 E-value=0.0024 Score=47.18 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=34.9
Q ss_pred HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015999 355 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHMHEF 395 (397)
Q Consensus 355 ~ai~rL~~l--GF~r~~~iqAy~ac~kne~~Aan~L~~~~~d~ 395 (397)
+.|+.|.+| .++++.+..+|.+|++|++.|+|.||+..++.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 448889999 34799999999999999999999999865543
No 194
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.52 E-value=0.0058 Score=51.72 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=58.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-CCchhhcccCCCCEEEEE
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL--KD-VTTLEENKVAENSFVVVM 73 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--y~GKiL--~D-~~tL~d~gI~~gstI~v~ 73 (397)
+|.||..+|+.+.-.+..++||.+|..-|... + ++....+|+ |-.|.| .| +++|.++|+.+..+|+|.
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 68899999999988999999999999999776 6 667788887 568888 34 789999999998888765
No 195
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.08 E-value=0.037 Score=45.48 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=57.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--CCCchhhcccCCCCEEEEEE
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--DVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--y~GKiL~--D~~tL~d~gI~~gstI~v~v 74 (397)
+|.||..+|+.+.-.+..++||.+|..-|... + +.....+|+ |-.|.|. .++||+++||.+..+|+|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999998888899999999999999854 5 556778886 5678886 36899999999988886643
No 196
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.06 E-value=0.0073 Score=43.47 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccC
Q 015999 354 REAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHM 392 (397)
Q Consensus 354 ~~ai~rL~~lGF~r~~~iqAy~ac~k-ne~~Aan~L~~~~ 392 (397)
+.-++.|.+||||++.|..|+-.++. ..+.|.+||+.-.
T Consensus 10 ~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 34599999999999999999998865 8999999998643
No 197
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.93 E-value=0.0096 Score=45.08 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCC---ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 354 REAIERLEAMGF---DRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 354 ~~ai~rL~~lGF---~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
.+++++|.+| | +++.+..+|.+|++|++.|++.||+-
T Consensus 19 ~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 19 NQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3679999999 7 79999999999999999999999974
No 198
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.84 E-value=0.025 Score=47.88 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=54.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCchhhcccCCCCEE
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENSFV 70 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--y~GKiL~D-~~tL~d~gI~~gstI 70 (397)
+|.||..+|+.+.-.+..++||.+|..-|..... + +......|+ |-.|.|.| ++||.++|+.+..+|
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~-~-~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARP-A-MAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCS-G-GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCc-C-CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 5889999999999999999999999999987632 0 445677887 56889976 689999999985443
No 199
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.71 E-value=0.0018 Score=60.10 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 354 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 354 ~~ai~rL~~lGF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
.+.|++|++|||+++.++.|+..|++|++.|++.||++
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 46799999999999999999999999999999999974
No 200
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.61 E-value=0.056 Score=42.61 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=58.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy---~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
++.|.....+++.+.|+|..++.+|--.|+++.. +.++...|.. .+..|+-+++|.||||++ |+.+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5677777778889999999999999999999988 8899888875 456788899999999997 66555444
No 201
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.33 E-value=0.017 Score=42.57 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=37.0
Q ss_pred chHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 166 NLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 166 ~~e~~I~~i~~M--G~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
..|+.|+.|.+| . ++++.|+.+|++.-+|.|+|++.|+.-
T Consensus 8 ~~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SCHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 368999999999 6 899999999999999999999999965
No 202
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.23 E-value=0.11 Score=43.03 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=46.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCeecCCC-------------CchhhcccCC
Q 015999 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGKVLKDV-------------TTLEENKVAE 66 (397)
Q Consensus 10 gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLiy----~GKiL~D~-------------~tL~d~gI~~ 66 (397)
+..+.+.|-..+||.++|+||-...-+. .| ++.+.|-| .|++|.|. .||.+|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4557888889999999999997664322 33 35666766 35677652 3789999999
Q ss_pred CCEEEEEE
Q 015999 67 NSFVVVML 74 (397)
Q Consensus 67 gstI~v~v 74 (397)
|++|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998754
No 203
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.12 E-value=0.0036 Score=57.96 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCC
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 209 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GI 209 (397)
++++.|+++++|| |+|++|++||+..-.+-++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4578999999999 9999999999999999999999999884
No 204
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.85 E-value=0.038 Score=39.20 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=35.7
Q ss_pred hHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 167 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 167 ~e~~I~~i~~M--G~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
.+..|+.|.|| . -++++|+++|+++-+|-|||+..|+++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 4 589999999999999999999999987
No 205
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.63 E-value=0.098 Score=40.06 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=46.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
|+|+||....+...+++....||.+|-+ +.+ ++++...+..+|+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 8999997744555689999999999764 467 8888888888999986555 2348888765
No 206
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.59 E-value=0.083 Score=39.78 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=42.2
Q ss_pred cccCCHHHHHHHHHHHHc-C-CChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015999 346 AVTVTPEEREAIERLEAM-G-FDRALVLEVFFACNKNEELAANYLLDHM 392 (397)
Q Consensus 346 ~~~lt~Ee~~ai~rL~~l-G-F~r~~~iqAy~ac~kne~~Aan~L~~~~ 392 (397)
...|+.+..+.|.+.+++ | -+...+++.|..|++|.+.|++..|++.
T Consensus 11 ~~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 11 ERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred hhhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 357899999999999997 8 4899999999999999999999999863
No 207
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.58 E-value=0.063 Score=40.56 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=39.8
Q ss_pred cCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 162 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 162 ~~g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
+.+.+++..|+.|.+|= -.++++.|+..|++.-+|.|+||+-|++-
T Consensus 13 ~~~~~~~~~v~~L~~MF-P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 13 VRRLEFNQAMDDFKTMF-PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCSHHHHHHHHHHC-SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 35678899999999991 12799999999999999999999999863
No 208
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.46 E-value=0.14 Score=43.94 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=47.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CchhhcccCC
Q 015999 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (397)
Q Consensus 11 k~~~veV~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLiy----~GK-iL~D~-------------~tL~d~gI~~ 66 (397)
..+.|.|-..+||.++|+||-+..-++ +| ++..-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457888889999999999998776543 43 33455655 344 46653 2899999999
Q ss_pred CCEEEEEEee
Q 015999 67 NSFVVVMLTK 76 (397)
Q Consensus 67 gstI~v~v~k 76 (397)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887543
No 209
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=94.27 E-value=0.059 Score=49.72 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=46.5
Q ss_pred hCHHHHHHHHHhHHHHHHHhcCCCCCCC-CcccccccccCCCcccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHH
Q 015999 305 QNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 382 (397)
Q Consensus 305 ~nP~l~~~I~~n~~~Fl~~l~~~~~~~~-g~~~~~~~~~~~~~~~lt~Ee~~ai~rL~~lGF~r~~~iqAy~ac~kne~ 382 (397)
.|++.+++.+.|++.|.+...+-...-+ +...+..+.. ....+-..+.+.|++|++|||+++.+++||..|+.|++
T Consensus 122 ln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~~ 198 (215)
T 1tte_A 122 QDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNV--EESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKSL 198 (215)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSSCCC--SCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSC
T ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCcccccch--hhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence 4677777788888888765322100000 0000000000 01233445568899999999999999999999999874
No 210
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.17 E-value=0.1 Score=38.58 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=41.9
Q ss_pred cccCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015999 346 AVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 392 (397)
Q Consensus 346 ~~~lt~Ee~~ai~rL~~l-GF~r~~~iqAy~ac~kne~~Aan~L~~~~ 392 (397)
...+++...+.|++.+++ |-++..+++.|.+|++|.+.|++..|++.
T Consensus 8 ~~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred hhhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 346788888899999996 88999999999999999999999999864
No 211
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.57 E-value=0.41 Score=35.85 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=44.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
|+|+|.--. ....+++....||.+|.+.+ + ++.....+..+|+++..+. -+++||.|.++
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 566666322 23456777778999998765 5 6677778889999997655 58899999876
No 212
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.41 E-value=0.19 Score=46.64 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=50.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEe-C----CeecCC-CCchhhcccCCCCEEEEEEee
Q 015999 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH-Q----GKVLKD-VTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 13 ~~veV~~~~TV~dLK~~I~~~~g~~~ip~~-~qrLiy-~----GKiL~D-~~tL~d~gI~~gstI~v~v~k 76 (397)
+++.++..+||.+|+++++..++ ++.+ ..||-. . ...|.| +.+|.+++|.++..|.|-++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 55778999999999999999999 9887 688843 2 245665 589999999999999887764
No 213
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=93.39 E-value=0.059 Score=59.26 Aligned_cols=41 Identities=39% Similarity=0.670 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 165 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
...++.|..|++|| |++++.++||++.-||.+||||||.+.
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 44678999999999 999999999999999999999999986
No 214
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=93.39 E-value=0.11 Score=36.81 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015999 355 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHMH 393 (397)
Q Consensus 355 ~ai~rL~~l--GF~r~~~iqAy~ac~kne~~Aan~L~~~~~ 393 (397)
+.++.|.+| .-++..+..+|.+|++|.+.|++.||+...
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 568999998 458999999999999999999999998643
No 215
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.32 E-value=0.22 Score=45.68 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=50.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEE--e-CC--eecCC-CCchhhcccCCCCEEEEEEee
Q 015999 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLI--H-QG--KVLKD-VTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 12 ~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~-~qrLi--y-~G--KiL~D-~~tL~d~gI~~gstI~v~v~k 76 (397)
.+++.++..+||.+|++++++.++ ++.+ ..||- | .+ ..|+| ++||.+++|.++..|.|-++.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 356788999999999999999999 9887 68883 4 33 34666 579999999999999887764
No 216
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=93.25 E-value=0.15 Score=35.01 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015999 353 EREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 392 (397)
Q Consensus 353 e~~ai~rL~~l-GF~r~~~iqAy~ac~kne~~Aan~L~~~~ 392 (397)
+.+.|++.+++ |-++..+++.|.+|++|.+.|++..|+++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 44678888886 88999999999999999999999988764
No 217
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=93.22 E-value=0.26 Score=37.58 Aligned_cols=51 Identities=14% Similarity=0.305 Sum_probs=44.0
Q ss_pred ccCCcchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCChHHHHHHHHcC-CCCCCC
Q 015999 161 LVAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 214 (397)
Q Consensus 161 l~~g~~~e~~I~~i~~M--G~~~f~r~~v~~ALrAafnNpdrAveyL~~G-IP~~~~ 214 (397)
-+++.+.++.|.+|.++ - |....|.++|..--+|+++.|..|+.| +|.++.
T Consensus 7 ~~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CCcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 35778899999999997 4 679999999999879999999999999 776653
No 218
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=92.75 E-value=0.79 Score=44.88 Aligned_cols=93 Identities=16% Similarity=0.300 Sum_probs=54.7
Q ss_pred HHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCCCCCCCcccccccccCCCcccCCHHHH-HHHHHH-
Q 015999 283 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER-EAIERL- 360 (397)
Q Consensus 283 ~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~~I~~n~~~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~Ee~-~ai~rL- 360 (397)
.+..+|..+|.+|.--+.. |+.+ =.|++-|+-... .....-.-.|....++.|.. ..+.-|
T Consensus 94 ~V~kiL~k~P~lL~~s~e~-----------L~~~-l~fL~~lGl~~~-----~i~~ll~~~P~lL~~s~e~i~~~v~~L~ 156 (335)
T 4fp9_B 94 PVCVVLKKSPQLLKLPIMQ-----------MRKR-SSYLQKLGLGEG-----KLKRVLYCCPEIFTMRQQDINDTVRLLK 156 (335)
T ss_dssp HHHHHHHHCGGGGGSCHHH-----------HHHH-HHHHHHTTCTTT-----THHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhChhhccCCHHH-----------HHHH-HHHHHHcCCCHH-----HHHHHHHhCchhhccChHHHHHHHHHHH
Confidence 5667888899987633332 2222 245565543321 11111122244667788875 335556
Q ss_pred HHcCCChHHHHHHHHHh-------CCCHHHHHHHHhccC
Q 015999 361 EAMGFDRALVLEVFFAC-------NKNEELAANYLLDHM 392 (397)
Q Consensus 361 ~~lGF~r~~~iqAy~ac-------~kne~~Aan~L~~~~ 392 (397)
..|||+++++..++..| ..+..--.+||...|
T Consensus 157 ~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 157 EKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRM 195 (335)
T ss_dssp HTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHh
Confidence 47999999999999887 345556666776544
No 219
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=92.68 E-value=0.17 Score=37.88 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=31.9
Q ss_pred HHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 356 AIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 356 ai~rL~~l-GF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
.|..|.+. |....+|..||..|++|.+.|+.||-+.
T Consensus 12 ~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 12 LLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 38888775 8999999999999999999999999653
No 220
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=92.56 E-value=0.58 Score=39.52 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=46.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-C---Ce-ecCCC-------------CchhhcccC
Q 015999 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH-Q---GK-VLKDV-------------TTLEENKVA 65 (397)
Q Consensus 10 gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLiy-~---GK-iL~D~-------------~tL~d~gI~ 65 (397)
+..+.+.|-..+||.++|+||-+..-+. +| ++.+.|-| . |+ +|.|. .||.+|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4567888889999999999997665332 33 35667766 2 34 36541 378999999
Q ss_pred CCCEEEEEEe
Q 015999 66 ENSFVVVMLT 75 (397)
Q Consensus 66 ~gstI~v~v~ 75 (397)
+|.+|.++.+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988644
No 221
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=92.18 E-value=0.44 Score=46.85 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=55.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCeecCCCCchhhcccCCCCEEEEEE
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD-VYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~-~ip~~~qrLiy------~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
.|.|... +.+.++.++++.||.++..+|.++.... ..+.++--|.. +|+=|++.++|+.|++.+++.|....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3555544 6778899999999999999998886520 13466667766 45668889999999999999887753
No 222
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=92.08 E-value=0.23 Score=37.10 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=32.7
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 015999 169 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 206 (397)
Q Consensus 169 ~~I~~i~~M-G~~~f~r~~v~~ALrAafnNpdrAveyL~ 206 (397)
+.|..|.+. | ....+|..||..+-+|.+.|++||-
T Consensus 11 ~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 11 ELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 679999996 8 8999999999999999999999995
No 223
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.27 E-value=0.61 Score=38.91 Aligned_cols=64 Identities=25% Similarity=0.362 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-CC---e-ecCCC-------------CchhhcccCC
Q 015999 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH-QG---K-VLKDV-------------TTLEENKVAE 66 (397)
Q Consensus 11 k~~~veV~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLiy-~G---K-iL~D~-------------~tL~d~gI~~ 66 (397)
..+.+.|-..+||.++|+||-...-+. .| ++.+.|-| .| + +|.|. .||.+|+|.+
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 347788888999999999997664322 33 34556655 33 3 35441 3789999999
Q ss_pred CCEEEEEEe
Q 015999 67 NSFVVVMLT 75 (397)
Q Consensus 67 gstI~v~v~ 75 (397)
|.+|-++-+
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988654
No 224
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.23 E-value=1.5 Score=34.82 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=47.4
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCCCchhhcccC
Q 015999 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY------PASQQMLIHQGKVLKDVTTLEENKVA 65 (397)
Q Consensus 1 MkI~Vktl~------g-k~~~veV~~~~TV~dLK~~I~~~~g~--~~i------p~~~qrLiy~GKiL~D~~tL~d~gI~ 65 (397)
|+|+||... | ....+++....||.+|.+.+...... ..+ ......+..+|+.... +.-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888764 3 45678887788999999999876420 000 0234567788888763 55689
Q ss_pred CCCEEEEE
Q 015999 66 ENSFVVVM 73 (397)
Q Consensus 66 ~gstI~v~ 73 (397)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998775
No 225
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.90 E-value=0.7 Score=34.78 Aligned_cols=65 Identities=6% Similarity=0.183 Sum_probs=44.5
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk-~~~veV~~~~TV~dLK~~I~~~~g~~~ip~--~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
|+|+||....- .-++++ ...||.+|++.+....+ +.. ....+.-+|+.+.+ .+.-+++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 88999977531 134666 56799999999976433 221 45667778887543 24468899999876
No 226
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=89.25 E-value=0.38 Score=36.60 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=25.7
Q ss_pred hHHhhccHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHH
Q 015999 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 314 (397)
Q Consensus 272 l~~L~~~P~f~~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~~I~ 314 (397)
+..++++|.+.++-+-+++||..+..++. ||.++..|+
T Consensus 22 i~~im~DP~~~~~lq~~~~NP~~~~k~~~-----nP~v~~~i~ 59 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQAQQNPAALQEHMK-----NPEVFKKIQ 59 (71)
T ss_dssp HHHHHTCTHHHHHHHHHHHCHHHHHHHHH-----SHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHCHHHHHHHHh-----CHHHHHHHH
Confidence 34566777777777777777776665443 777777664
No 227
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=89.24 E-value=0.16 Score=36.62 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=28.8
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 354 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 354 ~~ai~rL~~l--GF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
+++|+.|.+| .+|++.+.-+++++++|.+.|+|-||+-
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 4779999999 6899999999999999999999999873
No 228
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=89.04 E-value=0.83 Score=35.73 Aligned_cols=45 Identities=9% Similarity=0.265 Sum_probs=38.2
Q ss_pred ccCCHHHHHH----HHHHHH-cC--CChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 347 VTVTPEEREA----IERLEA-MG--FDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 347 ~~lt~Ee~~a----i~rL~~-lG--F~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
.+|++.|++. ++++.+ +| .++...++|-+.|+-|.+.|.|++|+.
T Consensus 24 ~~Ls~~d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 24 HQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4688888743 777777 57 699999999999999999999999963
No 229
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=88.76 E-value=0.61 Score=33.19 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCC--hHHHHHHHHHhCCCHHHHHHHHh
Q 015999 354 REAIERLEAMGFD--RALVLEVFFACNKNEELAANYLL 389 (397)
Q Consensus 354 ~~ai~rL~~lGF~--r~~~iqAy~ac~kne~~Aan~L~ 389 (397)
.++|.++.+|||+ -.---+.+.++++|+..|.+.|=
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 4789999999994 33346899999999999998774
No 230
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.16 E-value=0.8 Score=35.90 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=47.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----ecCCCCchhhc--ccCCCCEEEEEE
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-----VLKDVTTLEEN--KVAENSFVVVML 74 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GK-----iL~D~~tL~d~--gI~~gstI~v~v 74 (397)
+|+|.. .-++-|.|.+..+..+|+.+|.++.+ ++.+..+|.|+-. ++..+..|++. .++++ .|.|-+
T Consensus 7 ~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~-~LtL~C 80 (83)
T 1oey_A 7 TLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY-CLTLWC 80 (83)
T ss_dssp EEEEES--SSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT-EEEEEE
T ss_pred EEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCC-cEEEEE
Confidence 455554 36888999999999999999999999 8899999999652 33334444443 23344 455544
No 231
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=87.79 E-value=0.54 Score=41.15 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHH
Q 015999 354 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYL 388 (397)
Q Consensus 354 ~~ai~rL~~lGF-~r~~~iqAy~ac~kne~~Aan~L 388 (397)
+..++.|.++|| +++++++||....+|++.|...|
T Consensus 103 ~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 103 RRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 366999999997 99999999999999999998765
No 232
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=87.17 E-value=1.2 Score=31.36 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 364 GFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 364 GF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
|=+|+..|+-+..++-|+++|+|-||+.
T Consensus 22 gksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 22 GKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred CCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 8899999999999999999999999987
No 233
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=86.83 E-value=0.67 Score=34.06 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=30.7
Q ss_pred hHHhhccHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHH
Q 015999 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 314 (397)
Q Consensus 272 l~~L~~~P~f~~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~~I~ 314 (397)
+..++++|.|.+.-+-+++||+.+..+ .+||.+.+.|+
T Consensus 14 ~~~~m~dP~~~~~lq~i~~NP~~~~~~-----~~dP~v~~~~~ 51 (62)
T 2lnm_A 14 VAMAFQNPRVQAALMECSENPMNIMKY-----QNDKEVMDVFN 51 (62)
T ss_dssp HHHHTTSHHHHHHHHHHTTCGGGHHHH-----TTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHCHHHHHHH-----HhChHHHHHHH
Confidence 456678899999999999999977653 35999998885
No 234
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=86.37 E-value=4.7 Score=30.97 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=40.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCC---CCCC-----CCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 11 THFEIEVKPEDKVSDVKKNIETVQGSD---VYPA-----SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 11 k~~~veV~~~~TV~dLK~~I~~~~g~~---~ip~-----~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
+...+++....||.+|++.+...+..- .+.. ....+.-+|+.... +.-|++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 567788877889999999998775310 0110 23567788988865 4458889999876
No 235
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=85.88 E-value=2.2 Score=33.41 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=53.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 13 ~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
+...++-..++..||+.++.+.+ ++-+...+...+..|+++++|-+-+|+-...|.+.+-.+
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 33456667899999999999999 888899998899899999999999999888888877643
No 236
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.49 E-value=1.2 Score=35.01 Aligned_cols=57 Identities=9% Similarity=0.222 Sum_probs=40.9
Q ss_pred CCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEE
Q 015999 8 LKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 8 l~gk~~~veV~~~-~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
++|+.+ ++... .||.+|.+.+ + ++.....+..+|+++..+ ...+.-|++||.|-++-
T Consensus 25 vNGe~~--el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKDV--KWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEEE--CCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred ECCEEE--ECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 356654 45565 7999998765 5 667778888999998543 34455689999998763
No 237
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=84.62 E-value=0.75 Score=40.27 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=31.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~ 206 (397)
+...|.+|++.| .|+|++|..||+++-.|.++|+--|-
T Consensus 102 R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 102 RRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344678888988 34999999999999999999997663
No 238
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=83.80 E-value=1.8 Score=33.97 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=32.7
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCC
Q 015999 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQG 50 (397)
Q Consensus 3 I~Vktl-~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi-y~G 50 (397)
+.||.. ++..|-|.|..+.+..+||.+|..+.. + +...|+ |++
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykd 57 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLF 57 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCS
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecC
Confidence 344443 567899999999999999999999988 4 455554 443
No 239
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=83.64 E-value=3 Score=43.87 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=45.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CchhhcccCC
Q 015999 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (397)
Q Consensus 11 k~~~veV~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLiy----~GK-iL~D~-------------~tL~d~gI~~ 66 (397)
..+.|.|-..|||.++|+||-+..-+. .| ++.+.|-| .|+ +|.|. .||.+|+|.+
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 347788889999999999997554222 33 34556655 233 46553 3899999999
Q ss_pred CCEEEEEEe
Q 015999 67 NSFVVVMLT 75 (397)
Q Consensus 67 gstI~v~v~ 75 (397)
|++|.++-+
T Consensus 353 ga~v~L~p~ 361 (644)
T 3hm6_X 353 GATVALVPC 361 (644)
T ss_dssp TCEEEEEEC
T ss_pred CcEEEEEec
Confidence 999987644
No 240
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=83.37 E-value=1.3 Score=36.56 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=42.1
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-Ce------ecCCCCc---h
Q 015999 1 MKVFVKTLK------G--THFEIEVKP---EDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GK------VLKDVTT---L 59 (397)
Q Consensus 1 MkI~Vktl~------g--k~~~veV~~---~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~-GK------iL~D~~t---L 59 (397)
|+|+|+... | +.++|++.. ..||.+|...|.+.+. ..+-+|+.. |+ +|-++.. |
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678888654 3 356688873 3699999999877642 333344322 32 3333332 2
Q ss_pred --hhcccCCCCEEEEEE
Q 015999 60 --EENKVAENSFVVVML 74 (397)
Q Consensus 60 --~d~gI~~gstI~v~v 74 (397)
.++-+++||.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 346799999987753
No 241
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=83.36 E-value=4.9 Score=37.30 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=25.3
Q ss_pred CcccCCHHHH-HHHHH-HHHcCCChHHHHHHHHHhC
Q 015999 345 QAVTVTPEER-EAIER-LEAMGFDRALVLEVFFACN 378 (397)
Q Consensus 345 ~~~~lt~Ee~-~ai~r-L~~lGF~r~~~iqAy~ac~ 378 (397)
.....+.|.. ..++- +.++||+++++..++..|=
T Consensus 138 ~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P 173 (270)
T 3m66_A 138 RLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIP 173 (270)
T ss_dssp GGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCG
T ss_pred cceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3566777775 45774 5789999999988888774
No 242
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=83.05 E-value=4.2 Score=34.21 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=40.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHH----hCCCCCCC----CCeEEEe-CC---eecCC----------C----Cchhhccc
Q 015999 11 THFEIEVKPEDKVSDVKKNIETV----QGSDVYPA----SQQMLIH-QG---KVLKD----------V----TTLEENKV 64 (397)
Q Consensus 11 k~~~veV~~~~TV~dLK~~I~~~----~g~~~ip~----~~qrLiy-~G---KiL~D----------~----~tL~d~gI 64 (397)
..+.+.|-..+||.++|++|-.. .+ +|. +.+.|-| .| ++|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 45788888999999999999543 24 433 3445544 12 23322 1 36788999
Q ss_pred CCCCEEEEE
Q 015999 65 AENSFVVVM 73 (397)
Q Consensus 65 ~~gstI~v~ 73 (397)
.+|++|-++
T Consensus 116 ~Dgatlal~ 124 (126)
T 3kuz_A 116 SNGSTIKVF 124 (126)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEe
Confidence 999999765
No 243
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=82.92 E-value=0.74 Score=32.76 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=33.1
Q ss_pred cchHHHHHHHHHcCCCCCCHHH--HHHHHHHhcCChHHHHHHHH
Q 015999 165 SNLEATVQQILDMGGGSWDRET--VIRALRAAYNNPERAVEYLY 206 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f~r~~--v~~ALrAafnNpdrAveyL~ 206 (397)
+..+..|.+|++|| |+-+- ..+.|.+.-+|-.+|+|-|-
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHhh
Confidence 34788999999999 96654 46999999999999999873
No 244
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=82.34 E-value=4 Score=31.71 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=43.8
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCCHHHHHHHHHHHhCCC--CC-C-------CCCeEEEeCCeecCCCCchhhccc
Q 015999 1 MKVFVKTLK------GTHFEIEVKPEDKVSDVKKNIETVQGSD--VY-P-------ASQQMLIHQGKVLKDVTTLEENKV 64 (397)
Q Consensus 1 MkI~Vktl~------gk~~~veV~~~~TV~dLK~~I~~~~g~~--~i-p-------~~~qrLiy~GKiL~D~~tL~d~gI 64 (397)
|+|+|+... |+..+++++ ..||.+|+..+..++..- .+ . .....+..+|+...+..-+ +.-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 788888643 333346654 579999999998775310 00 0 1135666788876542222 4568
Q ss_pred CCCCEEEEE
Q 015999 65 AENSFVVVM 73 (397)
Q Consensus 65 ~~gstI~v~ 73 (397)
++||.|.++
T Consensus 79 ~~gDeV~i~ 87 (93)
T 3dwg_C 79 ADGDSVTIL 87 (93)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999876
No 245
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.94 E-value=2.6 Score=31.36 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015999 355 EAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 392 (397)
Q Consensus 355 ~ai~rL~~l-GF~r~~~iqAy~ac~kne~~Aan~L~~~~ 392 (397)
+.|.+.+++ |=++..+.+.|.++++|.+.|++..|++.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 568888886 88999999999999999999999999864
No 246
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=81.56 E-value=1.6 Score=33.05 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=43.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
|+|+| +|+.+.+ ...||.+|.+. .+ +++...-+.++|.++..+ ...+.-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LD---CTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TT---CCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cC---CCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 55554 4776554 56899998754 56 778888888999998532 34556789999998863
No 247
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=81.33 E-value=1.8 Score=33.23 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=44.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCCCchhhcccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip-~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
|+|+| +|+.+.+......||.+|.+. .+ ++ +...-+.++|.++..+ ...++-+++||.|-++-
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~----l~---~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSA----LK---VAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHH----HT---CSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHH----cC---CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 66655 477655431156799998765 45 77 7777888999998543 45667799999998763
No 248
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=80.55 E-value=6.8 Score=36.67 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=54.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEe---CCe--ecCCCCchhhcccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH---QGK--VLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~-~qrLiy---~GK--iL~D~~tL~d~gI~~gstI~v~v 74 (397)
|.|.|..++| ++++.|+++.|+.+|-..|+...| +... -.=|.| +|. -|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4688898988 688999999999999999999999 5432 334544 332 36778888887777666666666
Q ss_pred eecC
Q 015999 75 TKVI 78 (397)
Q Consensus 75 ~k~~ 78 (397)
+++-
T Consensus 78 r~kf 81 (294)
T 1ef1_A 78 RAKF 81 (294)
T ss_dssp EESS
T ss_pred EEEE
Confidence 6543
No 249
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=80.45 E-value=2.5 Score=30.87 Aligned_cols=60 Identities=7% Similarity=0.214 Sum_probs=41.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEE
Confidence 55544 47654 456678999998876 4 566777888899988532 2234468899999876
No 250
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=80.13 E-value=3.5 Score=30.23 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=41.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
|+|+|...+|+.+ ++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|.++-
T Consensus 1 m~i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEIK--RLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCEE--EECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCEE--EcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 7889987788764 55678899999887743322 1122334688876554 4566788887764
No 251
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=79.28 E-value=7.8 Score=36.73 Aligned_cols=72 Identities=15% Similarity=0.052 Sum_probs=53.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEe--CCe--ecCCCCchhhcccCCCCEEEEEEee
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIH--QGK--VLKDVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~-~~qrLiy--~GK--iL~D~~tL~d~gI~~gstI~v~v~k 76 (397)
.+.|..++| ++.+.|+.+.|+.+|=..|+...| +.. +-.=|.| +|. -|+.++.|.+.+++.+..+.+..++
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 577888888 788999999999999999999999 543 2334444 443 3777888988877666666565554
Q ss_pred c
Q 015999 77 V 77 (397)
Q Consensus 77 ~ 77 (397)
+
T Consensus 100 k 100 (314)
T 1h4r_A 100 K 100 (314)
T ss_dssp S
T ss_pred E
Confidence 4
No 252
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=79.20 E-value=3.3 Score=31.40 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=35.9
Q ss_pred CCHHHH-HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 349 VTPEER-EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 349 lt~Ee~-~ai~rL~~l--GF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
++..++ ..|.++.+| -+...-+...+..++.|.|.++|.||++
T Consensus 8 ~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 344454 669999887 4678999999999999999999999996
No 253
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=78.47 E-value=1.2 Score=33.99 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=27.1
Q ss_pred chHHhhccHHHH--HHHHHHHhCccchHHHHHHHhhhCHH-HHHHHHH
Q 015999 271 TLDFLRNSQQFQ--ALRTMVQANPQILQPMLQELGKQNPH-LMRLIQE 315 (397)
Q Consensus 271 ~l~~L~~~P~f~--~lrq~vq~NP~ll~~~Lqqi~~~nP~-l~~~I~~ 315 (397)
..+.+.+||++. -|.++-++||++++ +.++||+ |+++|++
T Consensus 18 lR~~vqqNP~lL~~lLqqL~~~NPqL~q-----~I~~n~e~Fl~ll~e 60 (72)
T 1pve_A 18 MRQIIQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLNE 60 (72)
T ss_dssp HHHHHTTCGGGHHHHHHHHHTTCHHHHH-----HHHTTHHHHHHHHHS
T ss_pred HHHHHHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHcC
Confidence 456677888865 45667778998665 4455644 7777754
No 254
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=78.02 E-value=5.9 Score=33.34 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--CCchhhcccCCCCEEEEEE
Q 015999 20 EDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVL-----KD--VTTLEENKVAENSFVVVML 74 (397)
Q Consensus 20 ~~TV~dLK~~I~~~~g~~~ip~~~qrLiy--~GKiL-----~D--~~tL~d~gI~~gstI~v~v 74 (397)
..|..+|-+.|..++| +. +.+.++- ..+.| +| +++|+++||+.|++|.|+-
T Consensus 19 ~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4799998888988899 54 3555543 34444 33 4899999999999998774
No 255
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=77.95 E-value=3 Score=33.82 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhCCCHHHHHHHH
Q 015999 348 TVTPEEREAIERLEA-MGFDRALVLEVFFACNKNEELAANYL 388 (397)
Q Consensus 348 ~lt~Ee~~ai~rL~~-lGF~r~~~iqAy~ac~kne~~Aan~L 388 (397)
.+++|+ |+.+++ .|-+|..+++||..|++|.=-|+-+|
T Consensus 63 ~i~~ed---i~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDD---IELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHH---HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHH---HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 467777 555554 69999999999999999999988776
No 256
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=77.57 E-value=7.1 Score=30.82 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=36.1
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCe
Q 015999 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGK 51 (397)
Q Consensus 3 I~Vkt-l~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~-~qrLiy~GK 51 (397)
|+||. .+|..+.+.|+++.+..+|.++|.+.++ +... ...|-|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECC
Confidence 44553 4678889999999999999999999988 6544 478878654
No 257
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=77.21 E-value=2.7 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=29.5
Q ss_pred HHHHHHHHc-CCC-hHHHHHHHHHhCCCHHHHHHHH
Q 015999 355 EAIERLEAM-GFD-RALVLEVFFACNKNEELAANYL 388 (397)
Q Consensus 355 ~ai~rL~~l-GF~-r~~~iqAy~ac~kne~~Aan~L 388 (397)
+.|.+++++ |-+ .+++++-|.+|++|.+.|++-.
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 568889888 886 4999999999999999998743
No 258
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.86 E-value=3.4 Score=31.58 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=33.1
Q ss_pred HHHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 355 EAIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 355 ~ai~rL~~l-GF-~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
--|++|+++ |. |-...-+||-|.++|...|+-+|-+.
T Consensus 26 ~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 26 TFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 359999997 87 88888999999999999999999875
No 259
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=76.74 E-value=5.2 Score=31.21 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=36.4
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
.+..-+.+|-+-=|.+.++.+.++|--+.-+|++||++|+++.
T Consensus 33 rL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 33 RLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3556677888866689999999999999999999999999964
No 260
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=75.51 E-value=1.8 Score=39.71 Aligned_cols=24 Identities=13% Similarity=0.476 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015999 168 EATVQQILDMGGGSWDRETVIRALRAA 194 (397)
Q Consensus 168 e~~I~~i~~MG~~~f~r~~v~~ALrAa 194 (397)
+..|+++++|| |+|+.|+.||+-.
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~~ 193 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRRL 193 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHc
Confidence 67999999999 9999999999643
No 261
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=75.21 E-value=9.6 Score=40.07 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CchhhcccCC
Q 015999 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (397)
Q Consensus 11 k~~~veV~~~~TV~dLK~~I~~~~g~~~ip------~~~qrLiy----~GK-iL~D~-------------~tL~d~gI~~ 66 (397)
..+.|.|-..|||.++|+||-+..-+. .| ++.+-|-| .|+ +|.|. .||.+|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 457788889999999999997664322 32 45566655 233 35441 3789999999
Q ss_pred CCEEEEEEee
Q 015999 67 NSFVVVMLTK 76 (397)
Q Consensus 67 gstI~v~v~k 76 (397)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999886543
No 262
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=74.75 E-value=1 Score=37.00 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=41.2
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CC--e------ecCCCCch--
Q 015999 1 MKVFVKTLK------GTHFEIEVKP----EDKVSDVKKNIETVQGSDVYPASQQMLIH-QG--K------VLKDVTTL-- 59 (397)
Q Consensus 1 MkI~Vktl~------gk~~~veV~~----~~TV~dLK~~I~~~~g~~~ip~~~qrLiy-~G--K------iL~D~~tL-- 59 (397)
|+|+||... |+..++++.. ..||.+|-..|.+.+. ..+-+|+. .| + +|-+++..
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 677787654 3555677763 2499998888876643 33444432 23 2 34444433
Q ss_pred ---hhcccCCCCEEEEE
Q 015999 60 ---EENKVAENSFVVVM 73 (397)
Q Consensus 60 ---~d~gI~~gstI~v~ 73 (397)
.+|-+++||.|.++
T Consensus 80 l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp HTSSCCCCCSSCEEEEE
T ss_pred cCCcccCCCCcCEEEEe
Confidence 24679999997775
No 263
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=74.36 E-value=3 Score=30.62 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=24.3
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015999 164 GSNLEATVQQILDMGGGSWDRETVIRALRAA 194 (397)
Q Consensus 164 g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAa 194 (397)
+...+++|.-|+.+| |.+.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 344578999999999 9999999999876
No 264
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=72.54 E-value=5.1 Score=31.68 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=25.5
Q ss_pred CEEEEEeCC-------C-cEEEEEeC--CCCCHHHHHHHHHHHhC
Q 015999 1 MKVFVKTLK-------G-THFEIEVK--PEDKVSDVKKNIETVQG 35 (397)
Q Consensus 1 MkI~Vktl~-------g-k~~~veV~--~~~TV~dLK~~I~~~~g 35 (397)
|+|+|+... | +..++++. ...||.+|...+.++..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 578887642 2 45667776 67899999999988763
No 265
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.43 E-value=10 Score=39.63 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=55.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeC---C--eecCCCCchhhcccCCCCEEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~-~~qrLiy~---G--KiL~D~~tL~d~gI~~gstI~v~v 74 (397)
|.|.|..++| ++.|.|+++.|+.+|=..|+...| +.. +-.=|.|. | ..|+.+++|.+.+++.+..+.+..
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg---L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG---LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC---CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 3578888888 788999999999999999999999 532 33455542 2 246778888888777777766666
Q ss_pred eecC
Q 015999 75 TKVI 78 (397)
Q Consensus 75 ~k~~ 78 (397)
+++-
T Consensus 81 Rvkf 84 (575)
T 2i1j_A 81 RAKF 84 (575)
T ss_dssp EESS
T ss_pred EEEE
Confidence 6543
No 266
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.59 E-value=0.78 Score=38.45 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=32.2
Q ss_pred HHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 356 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 356 ai~rL~~l-GF-~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
.|++|+++ |. |-...-+||-||++|...|+.+|-+.
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 58899998 87 78888999999999999999999765
No 267
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=71.93 E-value=6.7 Score=29.07 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=39.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 11 k~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~q--rLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
+...+++....||.+|.+.+...+.. .... .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 34567777778999999998776420 1233 778899988653 568899998875
No 268
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=71.59 E-value=16 Score=28.84 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=41.5
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC-CCC----Ce-------EEEeCCeecCCCCch
Q 015999 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY-PAS----QQ-------MLIHQGKVLKDVTTL 59 (397)
Q Consensus 1 MkI~Vktl~------g-k~~~veV~~~~TV~dLK~~I~~~~g~--~~i-p~~----~q-------rLiy~GKiL~D~~tL 59 (397)
|+|+|+... | +.++++ ..||.+|.+.+...+.. ..+ ... .. .+..+|+.......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~- 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG- 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS-
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC-
Confidence 688888764 2 234444 58999999999877420 001 001 23 56678876632211
Q ss_pred hhcccCCCCEEEEE
Q 015999 60 EENKVAENSFVVVM 73 (397)
Q Consensus 60 ~d~gI~~gstI~v~ 73 (397)
.++-+++||.|.++
T Consensus 80 ~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 80 LETLLKDSDEIGIL 93 (99)
T ss_dssp TTSCCCTTEEEEEE
T ss_pred CCCCCCCCCEEEEE
Confidence 23458899998875
No 269
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=70.45 E-value=15 Score=35.77 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=51.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeCC---------eecCCCCchhhcccCCCCEEE
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQG---------KVLKDVTTLEENKVAENSFVV 71 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip-~~~qrLiy~G---------KiL~D~~tL~d~gI~~gstI~ 71 (397)
.+.|..++|....+.|+.+.|+.+|-..|+...| +. .+..-|.+.. +-|+-+++|.+.++....+++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTT---CSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcC---CCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 5788999999999999999999999999999998 43 3445665532 235566777777666666665
Q ss_pred EEE
Q 015999 72 VML 74 (397)
Q Consensus 72 v~v 74 (397)
+.+
T Consensus 164 frv 166 (371)
T 3ivf_A 164 LRR 166 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 270
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=70.01 E-value=2.1 Score=31.57 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=20.5
Q ss_pred HHhhccHHHH--HHHHHHHhCccchHHHHHHHhhhCHH-HHHHH
Q 015999 273 DFLRNSQQFQ--ALRTMVQANPQILQPMLQELGKQNPH-LMRLI 313 (397)
Q Consensus 273 ~~L~~~P~f~--~lrq~vq~NP~ll~~~Lqqi~~~nP~-l~~~I 313 (397)
+.+.+||++. -|.++-++||++++ +.++||+ |+++|
T Consensus 18 ~~vq~NP~~L~~lLqql~~~nP~l~~-----~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 18 QIIQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQML 56 (61)
T ss_dssp HHHHHCGGGHHHHHHHHHHHCHHHHH-----HHHHSHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHH
Confidence 4455666654 45556677777554 3445544 56655
No 271
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=68.95 E-value=2.4 Score=31.95 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.0
Q ss_pred HhhccHHHHHHHHHHHhCccchHH-HHHHHhhhCHHHHHHHH
Q 015999 274 FLRNSQQFQALRTMVQANPQILQP-MLQELGKQNPHLMRLIQ 314 (397)
Q Consensus 274 ~L~~~P~f~~lrq~vq~NP~ll~~-~Lqqi~~~nP~l~~~I~ 314 (397)
.+++.|.|.++.+-|++||+.+.. .+ +||.+.+.|.
T Consensus 27 ~~~~DP~~~~~lq~i~~NP~~i~~~~~-----~dPrv~~~l~ 63 (71)
T 2llv_A 27 EMMKDPQLVAKLIGYKQNPQAIGQDLF-----TDPRLMTIMA 63 (71)
T ss_dssp HHHHSCTHHHHHHHHHHSCTTHHHHTT-----TCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHCHHHHHHHHh-----hCcHHHHHHH
Confidence 345677788888889999998764 33 5899888774
No 272
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=68.58 E-value=2.6 Score=30.28 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=30.6
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~ 206 (397)
+.++.|+.|.+|= -.+|++-++..|++--+|-|-||+.|+
T Consensus 11 e~~~~~~~L~~MF-P~lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 11 ERKDTLNTLQNMF-PDMDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHHHS-TTSCHHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHHHc-ccCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678999999992 127999999999999999999999987
No 273
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=67.80 E-value=6.7 Score=28.39 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=39.6
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEE
Q 015999 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 8 l~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ .-.+.-+++||.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4677654 4 568999998876 4 556677788899988533 22334688999998763
No 274
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=66.95 E-value=18 Score=34.06 Aligned_cols=70 Identities=14% Similarity=-0.010 Sum_probs=49.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCeEEEeC---C--eecCCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~-~~qrLiy~---G--KiL~D~~tL~d~gI~~gstI~v~ 73 (397)
|.+.|..++|....+.|+...|+.+|=..|+...| +.. +-.-|.|. | .-|+.++.|.+........+++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLN---LLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHT---CSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcC---CCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 46889999999999999999999999999999999 543 33455442 3 24777888877643333344443
No 275
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=65.41 E-value=19 Score=28.93 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=47.7
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCCCchhhc----ccCCCCEEEE
Q 015999 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------HQGKVLKDVTTLEEN----KVAENSFVVV 72 (397)
Q Consensus 3 I~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi------y~GKiL~D~~tL~d~----gI~~gstI~v 72 (397)
|+|-..+|....|.|+..+|+.++-+.+..+.++. ....--|+ +--+.|+|...|-+. .+.....|++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 55666789999999999999999999999998842 22233332 133778998776655 3455556655
No 276
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=63.00 E-value=8.2 Score=31.21 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=31.5
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 015999 168 EATVQQILD-MGGGSWDRETVIRALRAAYNNPERAVEYLY 206 (397)
Q Consensus 168 e~~I~~i~~-MG~~~f~r~~v~~ALrAafnNpdrAveyL~ 206 (397)
++-|.-+|+ .| -.|++.++||+.+.+|.=.|+-||.
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 466888887 78 9999999999999999999998873
No 277
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=62.77 E-value=10 Score=27.26 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=32.0
Q ss_pred cccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcCCC
Q 015999 160 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 210 (397)
Q Consensus 160 ~l~~g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~GIP 210 (397)
.++.+..+...+.+ |+|+-+.+||+..-+|..+|.+.| ||.
T Consensus 5 ~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 5 YLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp TTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 34455556665543 789999999999999999999988 664
No 278
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=61.53 E-value=6.2 Score=33.21 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=28.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE
Q 015999 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI 47 (397)
Q Consensus 13 ~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi 47 (397)
..+.|-.+.||.+||..|++..| +|+++|||-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW 89 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLW 89 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhC---CCcccEEEE
Confidence 35678889999999999999999 999999994
No 279
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=61.05 E-value=26 Score=33.63 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=41.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCC-CCchhhccc
Q 015999 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKD-VTTLEENKV 64 (397)
Q Consensus 10 gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~G-KiL~D-~~tL~d~gI 64 (397)
-....+.+.+..|+.++|++|++.++ ++++.|.|+|.+ +..-+ ......|.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 34566788899999999999999999 999999999998 44434 455566544
No 280
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=59.91 E-value=66 Score=25.82 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=52.7
Q ss_pred EEEEEeCCC---cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe---ecCCCCchhhcccCCCCEEEEEE
Q 015999 2 KVFVKTLKG---THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK---VLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 2 kI~Vktl~g---k~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GK---iL~D~~tL~d~gI~~gstI~v~v 74 (397)
+|+|...+. ..++++|..+.-|+-|.-+|-++.... -.-..--|-+--| .|+-..||..|||+.+..+++.-
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 578887654 568899999999999999998776511 2233444544332 46788899999999999998864
No 281
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=59.81 E-value=7.6 Score=31.17 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-----------CeEEEeCC-eecCC------CCchhhcccCCCCEEEEE
Q 015999 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-----------QQMLIHQG-KVLKD------VTTLEENKVAENSFVVVM 73 (397)
Q Consensus 12 ~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~-----------~qrLiy~G-KiL~D------~~tL~d~gI~~gstI~v~ 73 (397)
...|+|++++|+.+|-+.|.+.-. +... ...|+..+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 456889999999999999988433 2222 22333333 23422 478999999999998874
No 282
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=59.50 E-value=37 Score=25.07 Aligned_cols=56 Identities=5% Similarity=0.087 Sum_probs=36.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 12 HFEIEVKPEDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 12 ~~~veV~~~~TV~dLK~~I~~~~g~--~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
.++++ ....||.+|.+.+...+.. ..+......+..+|+.... +.-|++||.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 45555 5667999999988744210 0011234577889998853 4468899999876
No 283
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=58.63 E-value=23 Score=34.07 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=27.8
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHH----HHhcCChHHHHHHHH
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRAL----RAAYNNPERAVEYLY 206 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~AL----rAafnNpdrAveyL~ 206 (397)
+.+.+|.-|.++| +++++++++- ..+-.|||.-++||.
T Consensus 18 ~~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~ 59 (343)
T 3mva_O 18 KNEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLL 59 (343)
T ss_dssp --CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHH
Confidence 3457899999999 9999887652 223458888888885
No 284
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=58.56 E-value=12 Score=33.89 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=31.9
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 015999 169 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 206 (397)
Q Consensus 169 ~~I~~i~~M-G~~~f~r~~v~~ALrAafnNpdrAveyL~ 206 (397)
..|.+|-++ | ..=-+|..||..+-+|-|.|+|||-
T Consensus 5 ~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR 40 (196)
T 1aip_C 5 ELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLR 40 (196)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 578888887 7 8889999999999999999999996
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=57.23 E-value=11 Score=40.22 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCCCCchhhcc
Q 015999 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKDVTTLEENK 63 (397)
Q Consensus 10 gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~G-KiL~D~~tL~d~g 63 (397)
.+...+.+.++.|+.+||..|++.+| ++++.|.|++.+ ..++.......|.
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred cccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhhe
Confidence 45567888999999999999999999 999999999865 4556666777763
No 286
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=56.22 E-value=35 Score=26.51 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=48.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCC-CCCCCeEEEeCCee--cCCCCchhhcccCCCCEEEEEE
Q 015999 13 FEIEVKPEDKVSDVKKNIETVQ-GSDV-YPASQQMLIHQGKV--LKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 13 ~~veV~~~~TV~dLK~~I~~~~-g~~~-ip~~~qrLiy~GKi--L~D~~tL~d~gI~~gstI~v~v 74 (397)
.-+-|+..+|+.++-++++... |... -.+.-.|+.++|.. |.++.|+++.||++-+.|.++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4578999999999999987543 4331 11236788899988 9999999999999999998764
No 287
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=55.69 E-value=12 Score=35.69 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhcCChHHHHHHHHc
Q 015999 169 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 207 (397)
Q Consensus 169 ~~I~~i~~M-G~~~f~r~~v~~ALrAafnNpdrAveyL~~ 207 (397)
+.|++|-++ | +.=-+|.+||..+-+|-|.|+|||--
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 568888887 7 88899999999999999999999983
No 288
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=54.47 E-value=20 Score=34.22 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=38.3
Q ss_pred cccCCHHHHHHHHHHHHc----C----CChHHHHHHHHHhCCCHHHHHHHHhc
Q 015999 346 AVTVTPEEREAIERLEAM----G----FDRALVLEVFFACNKNEELAANYLLD 390 (397)
Q Consensus 346 ~~~lt~Ee~~ai~rL~~l----G----F~r~~~iqAy~ac~kne~~Aan~L~~ 390 (397)
.-.||++|.++|++|.+. | .|....++-|.||+.|++.|...|-+
T Consensus 32 ~~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 32 PGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 568999999999887764 4 47888999999999999999998753
No 289
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=54.41 E-value=5.1 Score=29.18 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=24.5
Q ss_pred hHHhhccHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHH
Q 015999 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 318 (397)
Q Consensus 272 l~~L~~~P~f~~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~~I~~n~~ 318 (397)
++.|+++|.+..+. +||++++ .|++| ++||+-.+-...||.
T Consensus 5 ~~kl~~dPe~~~~m----~dP~~~~-~lq~i-~~NP~~~~~~~~dP~ 45 (62)
T 2lnm_A 5 ISKIMENPDVAMAF----QNPRVQA-ALMEC-SENPMNIMKYQNDKE 45 (62)
T ss_dssp HHHHTTSHHHHHHT----TSHHHHH-HHHHH-TTCGGGHHHHTTCHH
T ss_pred HHHHHcChHHHHHc----CCHHHHH-HHHHH-HHCHHHHHHHHhChH
Confidence 45566777665443 5777554 55555 357776666655655
No 290
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=52.49 E-value=69 Score=24.92 Aligned_cols=72 Identities=18% Similarity=0.127 Sum_probs=44.1
Q ss_pred CEEEEEeCCCcEEEEEe-CCCCCHHHHHHHHHHHhCCC-CCCCCC-eE---EEe-CCeecCCCCchhhcccCCCCEEEEE
Q 015999 1 MKVFVKTLKGTHFEIEV-KPEDKVSDVKKNIETVQGSD-VYPASQ-QM---LIH-QGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV-~~~~TV~dLK~~I~~~~g~~-~ip~~~-qr---Liy-~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
|||+|+. .+..+.|-. +...||.+|-++--.++-+. .-.++. .. |-+ .|-+|+.+..|.+. +.++++|+-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999995 456666655 34569988876654433210 021222 22 223 67889888899886 5677777654
Q ss_pred E
Q 015999 74 L 74 (397)
Q Consensus 74 v 74 (397)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 3
No 291
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=51.82 E-value=42 Score=34.54 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=42.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCeEE--EeCCee---cCCCCchhhcccCCCCEEEE
Q 015999 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQML--IHQGKV---LKDVTTLEENKVAENSFVVV 72 (397)
Q Consensus 12 ~~~veV~~~~TV~dLK~~I~~~~g~~~ip---~~~qrL--iy~GKi---L~D~~tL~d~gI~~gstI~v 72 (397)
.+.|-|..+.||.||-..+.++.+ ++ ...+|| +|++|+ +.++.+|+.+.=....+|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 466778889999999999998887 65 567777 589975 67788887653222455544
No 292
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=51.13 E-value=4.9 Score=30.32 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=35.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 14 ~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
.+++....||.+|.+.+ + ++.....+..+|+++..+ .-|++||.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 34566678999987654 4 566777888999998765 457888887654
No 293
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=50.96 E-value=84 Score=24.33 Aligned_cols=62 Identities=8% Similarity=0.088 Sum_probs=48.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCC-CCCC-CeEEEeCC--eecCCCCchhhcccCCCCEEEEEE
Q 015999 13 FEIEVKPEDKVSDVKKNIETVQ-GSDV-YPAS-QQMLIHQG--KVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 13 ~~veV~~~~TV~dLK~~I~~~~-g~~~-ip~~-~qrLiy~G--KiL~D~~tL~d~gI~~gstI~v~v 74 (397)
.-+-|+..+|+.++-++++... |... -.+. -.++.++| +.|..+.|+.+-||++-+.|-+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4578999999999999987442 4331 1122 45777899 899999999999999999998865
No 294
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=50.38 E-value=47 Score=24.96 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=36.4
Q ss_pred EEeCCCCCHHHHHHHHHHHhCC--C--CC----CCCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 15 IEVKPEDKVSDVKKNIETVQGS--D--VY----PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 15 veV~~~~TV~dLK~~I~~~~g~--~--~i----p~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
++++...||.+|.+.+...... . .+ ......+..+|+...... -.+.-+++||.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 4555568999999999776310 0 00 013456778888775221 123468999998875
No 295
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=49.76 E-value=62 Score=26.12 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=46.8
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCe--ecCCCCchhhcccCCCCEEEEEEe
Q 015999 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGK--VLKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 5 Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi---y~GK--iL~D~~tL~d~gI~~gstI~v~v~ 75 (397)
|-..+...+++.+..+.|+.+|+..+.++.+ +..+.+.|+ ++|. +|++++.--.-.+.-+..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3344566678888889999999999999998 655577775 5664 345554333334555778877654
No 296
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=48.94 E-value=36 Score=28.99 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=37.1
Q ss_pred hHHHHHHHhhhCHHHHHHHHHhHHHHHHHhcCCCCCCCCcccccccccCCCcccCCHHHHHH-----HHHHHHcCCCh
Q 015999 295 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA-----IERLEAMGFDR 367 (397)
Q Consensus 295 l~~~Lqqi~~~nP~l~~~I~~n~~~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~Ee~~a-----i~rL~~lGF~r 367 (397)
|..++.+|. .|++++...++|+.++. .-.||+||+++ +.+|..+|-+-
T Consensus 37 LNkf~~sL~--~~~~RerF~aDpeA~l~-----------------------~~gLTeEEr~AV~~rD~~~L~~lGgn~ 89 (139)
T 1b4u_A 37 LNQFAMSLM--KAENRERFKADESAYLD-----------------------EWNLTPAAKAAVLARDYNAMIDEGGNV 89 (139)
T ss_dssp HHHHHHHTT--SHHHHHHHHHCHHHHHH-----------------------TTTCCHHHHHHHHHTCHHHHHHTTCCH
T ss_pred HHHHHHHHC--CHHHHHHHHhCHHHHHH-----------------------HcCCCHHHHHHHHcCCHHHHHHcCCCH
Confidence 457778886 49999999999998877 22579999988 45688888653
No 297
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.67 E-value=95 Score=24.42 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCchhhcccCCCCEEEEEEe
Q 015999 21 DKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 21 ~TV~dLK~~I~~~~g~~~ip~~~qrLiy--~GKiL~D~~tL~d~gI~~gstI~v~v~ 75 (397)
.+..+|+.+...+.+ ++....+|+. .|.+++|+.-+..+ . ..++.|++.
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL--p-~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL--G-DNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS--C-SSEEEEEEE
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC--C-CCCEEEEEc
Confidence 379999999999998 7666677754 58888877554433 3 444444444
No 298
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=48.58 E-value=9.9 Score=27.31 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015999 365 FDRALVLEVFFACNKNEELAANYL 388 (397)
Q Consensus 365 F~r~~~iqAy~ac~kne~~Aan~L 388 (397)
|.+..+.+|+..|++|...||..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 458889999999999999999876
No 299
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=47.12 E-value=24 Score=25.63 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHh
Q 015999 353 EREAIERLEAMGFDRALVLEVFFAC 377 (397)
Q Consensus 353 e~~ai~rL~~lGF~r~~~iqAy~ac 377 (397)
..+++.-|..|||.+.++-.|.-.+
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3479999999999999988888776
No 300
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=46.97 E-value=94 Score=24.31 Aligned_cols=57 Identities=7% Similarity=-0.009 Sum_probs=41.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCchhhc--ccCCCCEEEEEEe
Q 015999 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (397)
Q Consensus 14 ~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL-~D~~tL~d~--gI~~gstI~v~v~ 75 (397)
.+-|..+.||..+...|.++.+ + +..-|..+...+ ..+.+++++ ..+++.+|+|.-.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 4567889999999999999988 5 555555577654 446777766 3456888888654
No 301
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=46.21 E-value=18 Score=31.68 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=38.8
Q ss_pred cchHHHHHHH-HHcCCCCCCH---HHHHHHHHHhcCC-hHHHHHHHHcC--CCCC
Q 015999 165 SNLEATVQQI-LDMGGGSWDR---ETVIRALRAAYNN-PERAVEYLYSG--IPEQ 212 (397)
Q Consensus 165 ~~~e~~I~~i-~~MG~~~f~r---~~v~~ALrAafnN-pdrAveyL~~G--IP~~ 212 (397)
+..|..|+.| .|-| |.+ ++|+.||+..-.+ |..=.+||..| ||.+
T Consensus 61 s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 61 SQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 4678999999 7789 987 8899999999999 99888999998 6654
No 302
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=45.96 E-value=14 Score=25.33 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhCccchHHHHHHH
Q 015999 280 QFQALRTMVQANPQILQPMLQEL 302 (397)
Q Consensus 280 ~f~~lrq~vq~NP~ll~~~Lqqi 302 (397)
+=+++-.++.+||++|-.+|.|-
T Consensus 18 qqqqvl~ILksnPqLMAAfIkQR 40 (47)
T 1zoq_C 18 QQQQVLNILKSNPQLMAAFIKQR 40 (47)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCHHHHHHHHHHH
Confidence 34466666677777766666553
No 303
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=45.70 E-value=44 Score=22.13 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=31.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHH
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 206 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~ 206 (397)
.+..|.+.++.-| -+++.++.-|.++-.|.++||....
T Consensus 5 ~~~~i~~F~~iTg--~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678999999632 6899999999999999999997544
No 304
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=45.56 E-value=62 Score=25.32 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=42.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeec-CCCCchhhc--ccCCCCEEEEEEe
Q 015999 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (397)
Q Consensus 14 ~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy-~GKiL-~D~~tL~d~--gI~~gstI~v~v~ 75 (397)
.+-|..+.||..+...|.++.+ +.+++--.+| +...+ ..+.+++++ ..+++.+|+|.-.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys 85 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYC 85 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 4567789999999999999988 7666544444 66555 446677665 3447888888764
No 305
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=45.15 E-value=44 Score=24.21 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 164 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 164 g~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
.+.++.+|+.+.+|= =-++++++..-|+.. +|.+..+|=++.|
T Consensus 14 ~sql~~Mve~V~~mF-Pqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMF-PQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHC-TTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 356788999999992 116999999999988 9999999999988
No 306
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=44.73 E-value=12 Score=28.84 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 015999 366 DRALVLEVFFACNKNEELAANYL 388 (397)
Q Consensus 366 ~r~~~iqAy~ac~kne~~Aan~L 388 (397)
++..+.+||..|++|...||..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46778899999999999999876
No 307
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=43.89 E-value=60 Score=25.33 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=28.1
Q ss_pred EEEEeCCCcEE-EEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEE
Q 015999 3 VFVKTLKGTHF-EIEVK-PEDKVSDVKKNIETVQGSDVYPASQQML 46 (397)
Q Consensus 3 I~Vktl~gk~~-~veV~-~~~TV~dLK~~I~~~~g~~~ip~~~qrL 46 (397)
|+.|....+.+ .|.++ ...+|.+||+.|..+.+ +-....-|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k---l~~~dfDL 51 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK---LKAADCDL 51 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT---CCTTTEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC---CCCCcccE
Confidence 56666665543 56666 56899999999988877 43344444
No 308
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=42.66 E-value=59 Score=24.59 Aligned_cols=62 Identities=24% Similarity=0.242 Sum_probs=42.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEEe
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v~ 75 (397)
+|+|.+.+|+.+. +....|+.|+=..|....+. .-.--..+|+...-+ +-+++|+.|.++..
T Consensus 7 ~i~v~tP~G~~~~--lp~GaT~~D~A~~Ih~~lg~-----~~v~AkVNG~~v~L~-----~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVIS--LPIGSTVIDFAYAIHSAVGN-----RMIGAKVDGRIVPID-----YKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEEE--EETTCBHHHHHHHHCHHHHH-----TEEEEEETTEEECTT-----CBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEEE--ecCCCCHHHHHHHhhhhhhc-----ceEEEEECCEEcCCC-----cccCCCCEEEEEcc
Confidence 5788888998755 56778999998888655541 112234478776543 45788999887754
No 309
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=41.83 E-value=1e+02 Score=25.80 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=42.8
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeec-CCCCchhhc--ccC-CCCEEEEEEee
Q 015999 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVL-KDVTTLEEN--KVA-ENSFVVVMLTK 76 (397)
Q Consensus 15 veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi-y~GKiL-~D~~tL~d~--gI~-~gstI~v~v~k 76 (397)
+-|..+.||.+|...|.++.+ +.+++--.+ |.++.+ .-+.+++++ ..+ ++.+|+|....
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 120 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYAS 120 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 346788999999999999998 777766555 766655 456778776 233 46688887653
No 310
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=39.35 E-value=1e+02 Score=25.15 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=40.3
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCchhhc--cc-CCCCEEEEEEee
Q 015999 16 EVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (397)
Q Consensus 16 eV~~~~TV~dLK~~I~~~~g~~~ip~~~q-rLiy~GKiL~D~~tL~d~--gI-~~gstI~v~v~k 76 (397)
-|..+.||.+|...|.+..+ +.+++- -|+.++....-+.+++++ .. .++.+|+|....
T Consensus 50 lVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 45668899999999999888 666654 444455544567778776 23 346789887754
No 311
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=39.00 E-value=38 Score=26.89 Aligned_cols=59 Identities=8% Similarity=-0.053 Sum_probs=40.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCchhhcccCCCCEEEEEE
Q 015999 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (397)
Q Consensus 11 k~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~v 74 (397)
+.+.+++....||.++-+...-......+.....++-.+|++... +.-+++||.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEe
Confidence 456778889999999887764322210144556788888888873 44578899998763
No 312
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=38.61 E-value=53 Score=33.59 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=43.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeC--C--eecCCCCchhh
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQ--G--KVLKDVTTLEE 61 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~--~~qrLiy~--G--KiL~D~~tL~d 61 (397)
|.+.|..++|....+.|+...|+.+|-..|+.+.| +.. +..-|.+. + +.|++++.+-|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 35788999999999999999999999999999999 653 34455442 2 23666655444
No 313
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=37.41 E-value=16 Score=26.14 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHcCCC
Q 015999 182 WDRETVIRALRAAYNNPERAVEYLYSGIP 210 (397)
Q Consensus 182 f~r~~v~~ALrAafnNpdrAveyL~~GIP 210 (397)
|+|+-+.+||+.. +|..+|.+.| ||.
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L--GIs 46 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL--GVS 46 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT--TSC
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh--CCC
Confidence 7899999999999 9999999987 665
No 314
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=36.04 E-value=40 Score=31.27 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=36.6
Q ss_pred cccCCHHHHHHHHHHHH----cC----CChHHHHHHHHHhCCCHHHHHHHHhc
Q 015999 346 AVTVTPEEREAIERLEA----MG----FDRALVLEVFFACNKNEELAANYLLD 390 (397)
Q Consensus 346 ~~~lt~Ee~~ai~rL~~----lG----F~r~~~iqAy~ac~kne~~Aan~L~~ 390 (397)
..++|++|.++|++|.+ .+ .+....+.-|.||+.|++.|...|-+
T Consensus 23 ~~~l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 23 PGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45789999888888765 34 37888999999999999999998743
No 315
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=36.02 E-value=32 Score=25.81 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=22.7
Q ss_pred hHHhhccHHHHHHHHHHHhCccchHHHHHHHhhhCHHHHHHHHHhHH
Q 015999 272 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 318 (397)
Q Consensus 272 l~~L~~~P~f~~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~~I~~n~~ 318 (397)
+..+++.|.++.+. +||++. .+|++| .+||..+.-...||.
T Consensus 13 ~~~~m~dPEi~~im----~DP~~~-~~lq~~-~~NP~~~~k~~~nP~ 53 (71)
T 2llw_A 13 YQRAMKDPEVAAIM----QDPVMQ-SILQQA-QQNPAALQEHMKNPE 53 (71)
T ss_dssp HHHHHHSHHHHHHH----TCTHHH-HHHHHH-HHCHHHHHHHHHSHH
T ss_pred HHHHhcCHHHHHHh----CCHHHH-HHHHHH-HHCHHHHHHHHhCHH
Confidence 34455666554433 677643 355554 456777666655644
No 316
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.89 E-value=52 Score=23.71 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHc
Q 015999 165 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 207 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~ 207 (397)
+..++.|.+.|++-| =+++.++.-|.++-+|.++||...+.
T Consensus 13 ~~~~e~i~qF~~iTg--~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 13 SALKGLIQQFTTITG--ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHHTC--CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhC--CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 345678999999632 67999999999999999999986553
No 317
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=35.48 E-value=41 Score=26.90 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhC
Q 015999 10 GTHFEIEVKPEDKVSDVKKNIETVQG 35 (397)
Q Consensus 10 gk~~~veV~~~~TV~dLK~~I~~~~g 35 (397)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 45789999999999999999999887
No 318
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=35.05 E-value=1.8e+02 Score=23.80 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=41.3
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCchhhc--cc-CCCCEEEEEEee
Q 015999 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (397)
Q Consensus 15 veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy-~GKiL~D~~tL~d~--gI-~~gstI~v~v~k 76 (397)
+-|..+.||.+|...|.+..+ +.+++--.+| ++....-+.+++++ .- .++.+|+|....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 347789999999999999988 7666554455 55544556777776 23 345688887654
No 319
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=34.50 E-value=1.3e+02 Score=24.81 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=46.8
Q ss_pred EEEEeCCCCCHHHHHHHHHH-HhCCC----CCCCCCeEEEeCCeec--CCCCchhhcccCCCCEEEEE
Q 015999 13 FEIEVKPEDKVSDVKKNIET-VQGSD----VYPASQQMLIHQGKVL--KDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 13 ~~veV~~~~TV~dLK~~I~~-~~g~~----~ip~~~qrLiy~GKiL--~D~~tL~d~gI~~gstI~v~ 73 (397)
+.+-|.+..+.++|-+.+-. .++.. .|+-++-.+..+|+.. +.+++|.+.||...+.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 67889999999998877643 33311 2566677888999998 45799999999999998764
No 320
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=33.57 E-value=47 Score=26.84 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHc----CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 351 PEEREAIERLEAM----GFDRALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 351 ~Ee~~ai~rL~~l----GF~r~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
||=-++|++|..| .-|--.|.|||+-..++.+.|..||+..
T Consensus 8 ~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 8 PEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 3333556666654 3488899999999999999999999874
No 321
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=33.27 E-value=89 Score=25.13 Aligned_cols=57 Identities=12% Similarity=0.083 Sum_probs=39.0
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCchhhc--cc-CCCCEEEEEE
Q 015999 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVLKDVTTLEEN--KV-AENSFVVVML 74 (397)
Q Consensus 15 veV~~~~TV~dLK~~I~~~~g~~~ip~~~q-rLiy~GKiL~D~~tL~d~--gI-~~gstI~v~v 74 (397)
+-|..+.||.+|...|....+ +.+++- -|+.++....-+.+|+++ .. .++.+|+|..
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 345668899999999999888 666654 444455544567778776 23 3466888765
No 322
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=33.17 E-value=80 Score=24.83 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=34.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec
Q 015999 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVL 53 (397)
Q Consensus 11 k~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~q-rLiy~GKiL 53 (397)
..+.+.|++..|=.++|+.|+..++ +.+... .++..||.=
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 5799999999999999999999999 888877 456788754
No 323
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=32.91 E-value=1.3e+02 Score=24.97 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=41.8
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCchhhc--ccC-CCCEEEEEEee
Q 015999 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (397)
Q Consensus 15 veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy-~GKiL~D~~tL~d~--gI~-~gstI~v~v~k 76 (397)
+-|..+.||.++...|.+... +.+++--.+| ++....-+.+++++ .-+ ++.+|+|....
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 346789999999999999988 7666654445 55444567788776 333 56688887653
No 324
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=32.64 E-value=1.1e+02 Score=24.14 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=39.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-ec-CCCCchhhc--ccCCCCEEEEEEe
Q 015999 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-VL-KDVTTLEEN--KVAENSFVVVMLT 75 (397)
Q Consensus 14 ~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GK-iL-~D~~tL~d~--gI~~gstI~v~v~ 75 (397)
.+-|..+.||..|...|.++.+ +. .+-| |-+. .+ ..+.+++++ ..+++.+|+|.-+
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFl-yvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys 90 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFV-YVNSAFSPNPDESVIDLYNNFGFDGKLVVNYA 90 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEE-EEEEEECCCTTSBHHHHHHHHCBTTBEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEE-EECCcccCChhhHHHHHHHHhCCCCEEEEEEe
Confidence 4556788999999999999988 65 4444 4444 44 456777776 3455778888765
No 325
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=30.98 E-value=2e+02 Score=23.58 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=42.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCchhhc--ccC-CCCEEEEEEee
Q 015999 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (397)
Q Consensus 15 veV~~~~TV~dLK~~I~~~~g~~~ip~~~q-rLiy~GKiL~D~~tL~d~--gI~-~gstI~v~v~k 76 (397)
+-|..+.||.+|...|....+ +.+++- -|..++....-+.+++++ ..+ ++.+|+|....
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 346789999999999999988 766654 444577766667788776 333 46688887653
No 326
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=30.72 E-value=16 Score=28.21 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015999 365 FDRALVLEVFFACNKNEELAANYL 388 (397)
Q Consensus 365 F~r~~~iqAy~ac~kne~~Aan~L 388 (397)
|++..+.+||..|++|...||..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457888999999999999999876
No 327
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=30.40 E-value=43 Score=34.48 Aligned_cols=69 Identities=12% Similarity=0.243 Sum_probs=51.6
Q ss_pred EEEEeCC--CcEE----EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--eecC-CCCchhhc--ccCCC
Q 015999 3 VFVKTLK--GTHF----EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G--KVLK-DVTTLEEN--KVAEN 67 (397)
Q Consensus 3 I~Vktl~--gk~~----~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~----G--KiL~-D~~tL~d~--gI~~g 67 (397)
|++|..+ .+++ .+-|..+++|.+|-..|.+..| +|++.--.+|. + ..|+ .+.|+.++ .|.+|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 5666543 3333 2578889999999999999999 88886655564 3 2367 47899999 99999
Q ss_pred CEEEEEE
Q 015999 68 SFVVVML 74 (397)
Q Consensus 68 stI~v~v 74 (397)
+.|++-.
T Consensus 210 dII~fQ~ 216 (530)
T 2ylm_A 210 DIIVFQK 216 (530)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9887654
No 328
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=29.89 E-value=36 Score=27.31 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh-------cCChHHHHHHHHcC
Q 015999 170 TVQQILDMGGGSWDRETVIRALRAA-------YNNPERAVEYLYSG 208 (397)
Q Consensus 170 ~I~~i~~MG~~~f~r~~v~~ALrAa-------fnNpdrAveyL~~G 208 (397)
.|++.++|| |++..|.++++-- |...+.-|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 689999999 9999999998653 44444445444444
No 329
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=29.46 E-value=1.3e+02 Score=24.90 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=42.3
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCe--ecCCCCchhhcccCCCCEEEEEEe
Q 015999 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLI---HQGK--VLKDVTTLEENKVAENSFVVVMLT 75 (397)
Q Consensus 8 l~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~------~qrLi---y~GK--iL~D~~tL~d~gI~~gstI~v~v~ 75 (397)
.+...+++.+..+.|+.+|+..+.++.+ +..+ .++|+ ++|. +|++++.--.-.+.-+..|++..+
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 17 PDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp TTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred ccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3445567888889999999999999988 4333 67774 5664 355544322223555677776543
No 330
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=29.09 E-value=1.1e+02 Score=28.44 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=37.0
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCchhhc
Q 015999 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-------GKVLKDVTTLEEN 62 (397)
Q Consensus 3 I~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~-------GKiL~D~~tL~d~ 62 (397)
|+|-.-+|....|.|+++.|+.+|-..+..+.+ +..+.--.+|. -+.|+|...|-+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 455567888899999999999999988877765 33232222331 3678887666544
No 331
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=27.45 E-value=96 Score=29.94 Aligned_cols=32 Identities=13% Similarity=0.349 Sum_probs=23.0
Q ss_pred cccCCHHHH-HHHHHHHHcCCChHHHHHHHHHh
Q 015999 346 AVTVTPEER-EAIERLEAMGFDRALVLEVFFAC 377 (397)
Q Consensus 346 ~~~lt~Ee~-~ai~rL~~lGF~r~~~iqAy~ac 377 (397)
....+.|.. ..|.-|..+||+++.+...+..|
T Consensus 105 lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~ 137 (335)
T 4fp9_B 105 LLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCC 137 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHC
T ss_pred hccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345566555 55899999999887777666655
No 332
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=27.23 E-value=29 Score=24.65 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015999 365 FDRALVLEVFFACNKNEELAANYL 388 (397)
Q Consensus 365 F~r~~~iqAy~ac~kne~~Aan~L 388 (397)
|++..+.+||..| +|...||..|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 3467788999999 9999999876
No 333
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=26.82 E-value=40 Score=30.63 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=24.0
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRALRAAY 195 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~ALrAaf 195 (397)
..++++..|+.+| |.+.++.+|++...
T Consensus 163 ~~~ea~~AL~~LG---y~~~ea~~av~~~~ 189 (212)
T 2ztd_A 163 VRSPVVEALVGLG---FAAKQAEEATDTVL 189 (212)
T ss_dssp CHHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 4578999999999 99999999998863
No 334
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=26.77 E-value=1.3e+02 Score=27.36 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCcccCCHHHH-HHHHHH-HHcCCChHHHHH--HHHHhCC
Q 015999 344 PQAVTVTPEER-EAIERL-EAMGFDRALVLE--VFFACNK 379 (397)
Q Consensus 344 ~~~~~lt~Ee~-~ai~rL-~~lGF~r~~~iq--Ay~ac~k 379 (397)
|....++.+.. ..++-| .+||++.+.+++ +|+.|.-
T Consensus 173 P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sl 212 (270)
T 3m66_A 173 PKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL 212 (270)
T ss_dssp GGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCH
T ss_pred ChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCH
Confidence 34567777554 558888 469999888776 5555543
No 335
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=26.68 E-value=43 Score=31.26 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=41.1
Q ss_pred hHHhhccHHHHHHHHHHHhCcc--chHHHHHHHhhhCHHHHHHHHHhHHHHHHHhc
Q 015999 272 LDFLRNSQQFQALRTMVQANPQ--ILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 325 (397)
Q Consensus 272 l~~L~~~P~f~~lrq~vq~NP~--ll~~~Lqqi~~~nP~l~~~I~~n~~~Fl~~l~ 325 (397)
.+||++.-+..+|+++++.++. .|.-=+..|..-+|.|+..|..||..++.++.
T Consensus 19 ~~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~ 74 (279)
T 1ltl_A 19 EEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQ 74 (279)
T ss_dssp HHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHH
Confidence 4788875567888888844443 34444567778899999999999999999864
No 336
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=26.61 E-value=1.6e+02 Score=25.39 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=37.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCCCchhhcccCCCCEEEEE
Q 015999 14 EIEVKPEDKVSDVKKNIETVQGSDVYP---------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 14 ~veV~~~~TV~dLK~~I~~~~g~~~ip---------~~~qrLiy~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
.++++. .||.+|.+.+...+.. +. .....+..+|+......- .++-|++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 345655 8999999999776320 10 234567788888764322 24569999998876
No 337
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=26.51 E-value=2.1e+02 Score=26.85 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=45.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--e-C---CeecCCCCchhhc----ccCCCCEEEE
Q 015999 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H-Q---GKVLKDVTTLEEN----KVAENSFVVV 72 (397)
Q Consensus 3 I~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLi--y-~---GKiL~D~~tL~d~----gI~~gstI~v 72 (397)
|.|-..+|....|.|++++|+.+|-..+..+.++ ...+.--|+ | . -+.|.|...|-+. .......|++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 4444567888999999999999999888888773 223333332 2 1 2678888777665 3444455544
No 338
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=25.61 E-value=43 Score=30.08 Aligned_cols=26 Identities=12% Similarity=0.330 Sum_probs=23.7
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015999 166 NLEATVQQILDMGGGSWDRETVIRALRAA 194 (397)
Q Consensus 166 ~~e~~I~~i~~MG~~~f~r~~v~~ALrAa 194 (397)
..++++..|+.+| |.+.++.+|++..
T Consensus 159 ~~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 159 AEQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 3578999999999 9999999999887
No 339
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=24.81 E-value=1.1e+02 Score=24.56 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCeecCCCCchhhcccCCCCEEEEE
Q 015999 21 DKVSDVKKNIETVQGSDVYPAS--QQMLI--HQGKVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 21 ~TV~dLK~~I~~~~g~~~ip~~--~qrLi--y~GKiL~D~~tL~d~gI~~gstI~v~ 73 (397)
.+..+|+.|...+.+ ++.. ..+|+ ..|.+++|+.-+.. +.++..++++
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~t--Lp~nT~lmvL 88 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLC--LPSNTKFVAL 88 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSS--SCSCCEEEEE
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhc--CCCCCEEEEE
Confidence 479999999999999 7542 35554 46999988765554 3355555444
No 340
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=24.66 E-value=43 Score=26.44 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHhcCChHHHHHHHHcCCC
Q 015999 182 WDRETVIRALRAAYNNPERAVEYLYSGIP 210 (397)
Q Consensus 182 f~r~~v~~ALrAafnNpdrAveyL~~GIP 210 (397)
|+|+-+++||+.+-+|..+|.+.| ||.
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L--GIs 84 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM--GIN 84 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 789999999999999999999998 654
No 341
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=24.65 E-value=1.4e+02 Score=31.59 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=38.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy 48 (397)
|.+.|..++|....+.|+...|+.+|-..|+.+.|- ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467899999999999999999999999999999982 2345566655
No 342
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=24.54 E-value=39 Score=26.70 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 015999 366 DRALVLEVFFACNKNEELAANYL 388 (397)
Q Consensus 366 ~r~~~iqAy~ac~kne~~Aan~L 388 (397)
++..+.+||..|++|...||..|
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 47788899999999999999876
No 343
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=24.34 E-value=98 Score=33.12 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=39.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--e----cCC--CCchhhcccCCCCEEEEE
Q 015999 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS--------QQMLIHQGK--V----LKD--VTTLEENKVAENSFVVVM 73 (397)
Q Consensus 13 ~~veV~~~~TV~dLK~~I~~~~g~~~ip~~--------~qrLiy~GK--i----L~D--~~tL~d~gI~~gstI~v~ 73 (397)
..+.++.+.|+.+|-+.|+.+.... +..- ..+++|... . .++ +++|+++||++|+.|.|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4577787889999988888753310 2111 235666532 1 112 578999999999998874
No 344
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=23.75 E-value=84 Score=24.41 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=32.6
Q ss_pred cccCCHHHHHHHHHHHHcC-C-ChHHHHHHHHHhCCCHHHHHH
Q 015999 346 AVTVTPEEREAIERLEAMG-F-DRALVLEVFFACNKNEELAAN 386 (397)
Q Consensus 346 ~~~lt~Ee~~ai~rL~~lG-F-~r~~~iqAy~ac~kne~~Aan 386 (397)
.|.|+++-.+-|+.+++-| | ++..||+..+-.....+....
T Consensus 7 sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l~ 49 (88)
T 3kxe_C 7 SVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAKLA 49 (88)
T ss_dssp EECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 5789999999999999987 7 899999998877665554433
No 345
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=23.74 E-value=1.1e+02 Score=24.07 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec
Q 015999 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVL 53 (397)
Q Consensus 10 gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~q-rLiy~GKiL 53 (397)
...+.+.|+...|=.++|+.|+..++ +.+... .++..||.=
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~---VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFK---VKVVKVNTLHVRGKKK 62 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTT---CCEEEEEEEEECCCEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CceeeeeeeeeCCcee
Confidence 36899999999999999999999999 777777 446777643
No 346
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=23.63 E-value=78 Score=24.84 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHH
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVK 27 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK 27 (397)
+|+|...+|+.++|++....||.+.-
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 78999999999999999999998854
No 347
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=23.58 E-value=48 Score=27.03 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=47.2
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eecCCCCchhhcccCCCCEEEEE
Q 015999 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KVLKDVTTLEENKVAENSFVVVM 73 (397)
Q Consensus 3 I~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~G---KiL~D~~tL~d~gI~~gstI~v~ 73 (397)
|+|..++ ..++++|..+.-|+-|.-+|-++.... -.-..--|-+-- -.|+-..||..|||+.+..+++.
T Consensus 29 V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~-~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 29 VHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVK-KDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSC-CCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEecCC-ccEEEEEeeccccccchhhhhhhhccc-ccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 3444333 678889998899999999998776510 122233443322 24677889999999999988764
No 348
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.30 E-value=1.6e+02 Score=21.36 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 165 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
+.++.+|.++.+|= =-++++.+..-|+-. +|.+..+|=++.|
T Consensus 11 ~ql~~mv~~V~~mf-P~vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 11 VQLATLAQRVKEVL-PHVPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCHHHHHHHHHHHC-SSSCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 57889999999992 116999999999877 5999999999999
No 349
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=22.88 E-value=60 Score=28.23 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=21.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 015999 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (397)
Q Consensus 2 kI~Vktl~gk~~~veV~~~~TV~dLK~~ 29 (397)
+|+|+ ++|+.+++++++..|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 56665 6899999999999999986543
No 350
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=22.68 E-value=31 Score=24.80 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCcc--chHHHHHHHhhhCHHHHH
Q 015999 280 QFQALRTMVQANPQ--ILQPMLQELGKQNPHLMR 311 (397)
Q Consensus 280 ~f~~lrq~vq~NP~--ll~~~Lqqi~~~nP~l~~ 311 (397)
.+++|++-+.+++. -=+.+|. |-++||+|..
T Consensus 9 aLqqLl~tlksp~speqqqqvl~-ILksNPqLMA 41 (59)
T 1kbh_B 9 ALQDLLRTLKSPSSPQQQQQVLN-ILKSNPQLMA 41 (59)
T ss_dssp HHHHHHHHHHSCTTTTCSTHHHH-HHTTSHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH-HHHhCHHHHH
Confidence 45555555555432 2223333 5566777654
No 351
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=22.46 E-value=1e+02 Score=24.92 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=43.5
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC-----CCCCCCeEEEe---CCee--cCC-CCchhhcccCCCCEEE
Q 015999 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD-----VYPASQQMLIH---QGKV--LKD-VTTLEENKVAENSFVV 71 (397)
Q Consensus 3 I~Vktl~gk~~~veV~~~~TV~dLK~~I~~~~g~~-----~ip~~~qrLiy---~GKi--L~D-~~tL~d~gI~~gstI~ 71 (397)
|.+=..+|-.+.+++..+.|+.++|..+.++..+- .-.++.-.+.. .|.+ |.| ++.|.++... -..|.
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piLk 100 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLK 100 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEEE
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEEE
Confidence 33444578888999999999999999998774320 01122223322 2333 655 4788888765 33455
Q ss_pred EEE
Q 015999 72 VML 74 (397)
Q Consensus 72 v~v 74 (397)
|+-
T Consensus 101 lve 103 (108)
T 2v1y_A 101 VIE 103 (108)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 352
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=22.38 E-value=60 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=21.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHH
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVK 27 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK 27 (397)
|+|+++ ++|+.+++++++..|+.++-
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~L 29 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLL 29 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHH
Confidence 356666 78999999999999998864
No 353
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=22.05 E-value=69 Score=24.33 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCCeEEEeCC
Q 015999 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP-----ASQQMLIHQG 50 (397)
Q Consensus 12 ~~~veV~~~~TV~dLK~~I~~~~g~~~ip-----~~~qrLiy~G 50 (397)
.+.|.|.++.+..+|..+|..+.+ .. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 578899999999999999999988 43 2456666644
No 354
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=21.75 E-value=55 Score=30.29 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcc
Q 015999 368 ALVLEVFFACNKNEELAANYLLDH 391 (397)
Q Consensus 368 ~~~iqAy~ac~kne~~Aan~L~~~ 391 (397)
-..+++|+.|++|...||..|+=|
T Consensus 199 l~TL~~yl~~~~~~~~tA~~L~iH 222 (262)
T 3onq_A 199 YLTVSTFLKYGSSLENTAKELNVH 222 (262)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCC
Confidence 357899999999999999999854
No 355
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=21.70 E-value=1e+02 Score=22.71 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhC
Q 015999 348 TVTPEEREAIERLEA-MGFDRALVLEVFFACN 378 (397)
Q Consensus 348 ~lt~Ee~~ai~rL~~-lGF~r~~~iqAy~ac~ 378 (397)
.+|+-|++.|..+.+ .||+.+.+..|+.-|-
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~ 48 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALREAV 48 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 578999999988775 7999999999999883
No 356
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.57 E-value=2e+02 Score=20.70 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 165 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 165 ~~~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
+..+.+|+++.+|= =-++++.+..-|+-.- |.+..+|=++.|
T Consensus 11 ~q~~~mv~~V~~mf-P~vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 11 SQLNAMAHQIQEMF-PQVPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CHHHHHHHHHHHHC-CSSCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 56789999999992 1169999999998776 999999999988
No 357
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=21.35 E-value=65 Score=27.79 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 015999 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (397)
Q Consensus 1 MkI~Vktl~gk~~~veV~~~~TV~dLK~~ 29 (397)
|+|+|+ ++|+.+++++++..||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456666 6899999999999999886543
No 358
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.20 E-value=98 Score=25.20 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCccchHHHHHHHhhhCHHHHHHH
Q 015999 281 FQALRTMVQANPQILQPMLQELGKQNPHLMRLI 313 (397)
Q Consensus 281 f~~lrq~vq~NP~ll~~~Lqqi~~~nP~l~~~I 313 (397)
+.+|++++..||+....+| .+||||.-.|
T Consensus 58 L~qmK~~~~~nP~~a~~LL----~q~PQLAyAl 86 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAASLL----ELCPQLSFVT 86 (109)
T ss_dssp HHHHHHHHHHCHHHHHHHH----HHCHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHH----HHCchHHHHH
Confidence 5588999999999766554 4688887666
No 359
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=20.87 E-value=1.9e+02 Score=23.02 Aligned_cols=54 Identities=2% Similarity=0.017 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee--cC-CCCchhhcccCCCCEEEEEEee
Q 015999 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LK-DVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 21 ~TV~dLK~~I~~~~g~~~ip~~~qrLiy~G---Ki--L~-D~~tL~d~gI~~gstI~v~v~k 76 (397)
.|...|+.+|...+.. +......|.|.. -. +. |+............+|.|.++.
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEc
Confidence 4799999999999642 445567888854 22 22 2222233334445677777753
No 360
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=20.70 E-value=1.4e+02 Score=19.23 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.3
Q ss_pred cCCHHHHHH-HHHHHH
Q 015999 348 TVTPEEREA-IERLEA 362 (397)
Q Consensus 348 ~lt~Ee~~a-i~rL~~ 362 (397)
.||+|++.. |++|++
T Consensus 17 nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 17 NLNEEQRNAKIKSIRD 32 (34)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHhHHHHHhc
Confidence 568888855 888875
No 361
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=20.65 E-value=3e+02 Score=21.25 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=49.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-CeecCCCCchhhcccCCCCEEEEEEeec
Q 015999 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GKVLKDVTTLEENKVAENSFVVVMLTKV 77 (397)
Q Consensus 14 ~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrLiy~-GKiL~D~~tL~d~gI~~gstI~v~v~k~ 77 (397)
.+.|........+-+-.++++. +++...-+|.+ |--+....+-...-+|.|+.|.++-|-+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~---vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFK---VPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT---CCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred EEecCccCchHHHHHHHHHHcC---CCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 4678777778877778888988 88888888765 5557888899999999999999986644
No 362
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.36 E-value=2.4e+02 Score=20.05 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHH
Q 015999 348 TVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANY 387 (397)
Q Consensus 348 ~lt~Ee~~ai~rL~~l-GF~r~~~iqAy~ac~kne~~Aan~ 387 (397)
.|+++..+-|.+|... |-..+-....+..|++|.+.|..-
T Consensus 2 ~ls~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4788777778888775 888888899999999999999874
No 363
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=20.13 E-value=1.7e+02 Score=23.98 Aligned_cols=54 Identities=2% Similarity=0.015 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe---e--cC-CCCchhhcccCCCCEEEEEEee
Q 015999 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQGK---V--LK-DVTTLEENKVAENSFVVVMLTK 76 (397)
Q Consensus 21 ~TV~dLK~~I~~~~g~~~ip~~~qrLiy~GK---i--L~-D~~tL~d~gI~~gstI~v~v~k 76 (397)
.+...|+.+|...+.. +......|.|... . +. |+.....+......++.|.++.
T Consensus 57 ~s~~~L~~kV~~lFp~--L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEe
Confidence 4899999999999841 5556788888542 2 22 3332233334345577777654
No 364
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=20.04 E-value=96 Score=24.47 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEE-EeCCee
Q 015999 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQML-IHQGKV 52 (397)
Q Consensus 12 ~~~veV~~~~TV~dLK~~I~~~~g~~~ip~~~qrL-iy~GKi 52 (397)
.+.+.|++..|=.++|+.|+..++ +.+....- +..||.
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~---VkV~~VNT~~~~gK~ 62 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFG---VRVIGISTMNVPGKR 62 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHC---CCCSEEEECCBCCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhC---CCceEEEeEEeCCcc
Confidence 388999999999999999999999 88877744 567754
No 365
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.03 E-value=2.4e+02 Score=21.42 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=32.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCChHHHHHHHHcC
Q 015999 167 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 208 (397)
Q Consensus 167 ~e~~I~~i~~MG~~~f~r~~v~~ALrAafnNpdrAveyL~~G 208 (397)
.+..+++|-|.- |-=|-.-...||+|+-+|-..||-+|..-
T Consensus 24 ~q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 456788888873 23366666789999999999999999854
Done!