Query 016001
Match_columns 397
No_of_seqs 162 out of 415
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 02:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2056 Equilibrative nucleosi 100.0 2.7E-57 5.8E-62 446.4 24.2 164 9-172 3-166 (336)
2 KOG2057 Predicted equilibrativ 100.0 4.7E-51 1E-55 401.7 21.4 209 8-227 4-229 (499)
3 cd03571 ENTH_epsin ENTH domain 100.0 1.5E-49 3.2E-54 344.3 13.3 123 27-149 1-123 (123)
4 PF01417 ENTH: ENTH domain; I 100.0 2.5E-43 5.4E-48 300.5 14.9 124 25-148 1-125 (125)
5 smart00273 ENTH Epsin N-termin 100.0 5E-35 1.1E-39 249.8 13.3 126 26-152 1-127 (127)
6 cd03572 ENTH_epsin_related ENT 99.9 2.8E-25 6E-30 193.2 10.6 113 30-145 4-120 (122)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.9 4.1E-23 8.9E-28 172.9 11.7 113 29-144 2-115 (115)
8 cd03564 ANTH_AP180_CALM ANTH d 99.8 7.5E-19 1.6E-23 149.0 10.9 112 28-142 1-114 (117)
9 PF07651 ANTH: ANTH domain; I 98.7 6.6E-08 1.4E-12 91.8 9.2 113 26-139 2-117 (280)
10 KOG0251 Clathrin assembly prot 98.3 7.3E-06 1.6E-10 86.2 11.8 114 24-141 20-137 (491)
11 PF00790 VHS: VHS domain; Int 98.0 2.6E-05 5.6E-10 68.4 8.3 109 25-142 3-116 (140)
12 smart00288 VHS Domain present 97.5 0.00096 2.1E-08 58.5 10.4 107 29-142 2-109 (133)
13 cd03568 VHS_STAM VHS domain fa 97.4 0.0016 3.5E-08 58.3 10.7 107 29-143 2-109 (144)
14 cd03565 VHS_Tom1 VHS domain fa 97.4 0.0018 4E-08 57.6 10.7 113 27-143 1-114 (141)
15 cd03561 VHS VHS domain family; 97.4 0.0022 4.7E-08 56.0 10.7 109 29-143 2-111 (133)
16 cd03569 VHS_Hrs_Vps27p VHS dom 97.3 0.0039 8.5E-08 55.6 11.9 111 25-143 2-113 (142)
17 cd03567 VHS_GGA VHS domain fam 97.2 0.0045 9.7E-08 55.4 10.8 111 27-143 1-115 (139)
18 KOG1087 Cytosolic sorting prot 96.5 0.021 4.6E-07 60.4 10.9 108 28-142 2-110 (470)
19 KOG2199 Signal transducing ada 90.9 2.9 6.3E-05 44.2 11.7 122 25-160 6-138 (462)
20 KOG1086 Cytosolic sorting prot 73.1 13 0.00027 40.2 7.6 32 76-108 57-88 (594)
21 KOG0980 Actin-binding protein 70.0 9.4 0.0002 43.9 6.2 108 30-141 9-116 (980)
22 cd03562 CID CID (CTD-Interacti 69.9 27 0.00059 29.2 7.7 105 27-144 3-108 (114)
23 smart00582 RPR domain present 60.0 40 0.00086 28.3 6.8 95 43-144 11-107 (121)
24 KOG1924 RhoA GTPase effector D 54.2 59 0.0013 37.7 8.6 107 45-159 368-480 (1102)
25 KOG2176 Exocyst complex, subun 51.6 9.6 0.00021 43.2 2.2 46 26-78 16-63 (800)
26 PF12755 Vac14_Fab1_bd: Vacuol 50.7 71 0.0015 27.0 6.8 76 58-144 22-97 (97)
27 COG5602 SIN3 Histone deacetyla 41.4 96 0.0021 36.4 7.9 80 7-87 567-659 (1163)
28 KOG1525 Sister chromatid cohes 40.5 1.6E+02 0.0035 35.6 9.9 121 31-155 409-538 (1266)
29 PF08513 LisH: LisH; InterPro 34.7 52 0.0011 21.8 2.9 20 87-106 6-25 (27)
30 KOG2057 Predicted equilibrativ 34.7 68 0.0015 33.8 5.1 41 266-306 314-355 (499)
31 PF06881 Elongin_A: RNA polyme 34.0 65 0.0014 27.4 4.2 42 43-87 19-73 (109)
32 smart00667 LisH Lissencephaly 33.9 47 0.001 21.2 2.6 20 87-106 9-28 (34)
33 PF12755 Vac14_Fab1_bd: Vacuol 29.4 1.1E+02 0.0025 25.7 4.8 64 20-94 31-96 (97)
34 COG4907 Predicted membrane pro 27.6 79 0.0017 34.6 4.3 23 128-150 521-543 (595)
35 PF04904 NCD1: NAB conserved r 26.2 62 0.0014 27.4 2.6 39 45-87 33-71 (82)
36 KOG2003 TPR repeat-containing 25.5 3.3E+02 0.0071 30.4 8.4 20 135-154 712-731 (840)
37 PF07571 DUF1546: Protein of u 24.3 2.7E+02 0.0059 23.1 6.1 53 44-99 26-80 (92)
38 PF08467 Luteo_P1-P2: Luteovir 22.8 1E+02 0.0023 32.0 4.0 40 125-164 138-177 (361)
39 PF09339 HTH_IclR: IclR helix- 22.6 26 0.00057 25.6 -0.2 26 82-107 2-27 (52)
40 KOG1818 Membrane trafficking a 21.7 2.7E+02 0.0058 31.5 7.1 87 26-114 7-96 (634)
41 cd03820 GT1_amsD_like This fam 21.2 1.3E+02 0.0028 27.0 3.9 33 130-162 305-337 (348)
42 KOG2160 Armadillo/beta-catenin 21.1 3E+02 0.0064 28.9 6.9 138 18-160 158-326 (342)
43 cd04962 GT1_like_5 This family 20.4 1.2E+02 0.0027 28.6 3.8 33 130-162 322-355 (371)
44 cd03817 GT1_UGDG_like This fam 20.3 1.1E+02 0.0024 28.0 3.3 30 133-162 332-361 (374)
No 1
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.7e-57 Score=446.36 Aligned_cols=164 Identities=46% Similarity=0.834 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHH
Q 016001 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAV 88 (397)
Q Consensus 9 qtvr~ikRkV~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~L 88 (397)
.+++++||+|+|+|++|+++|+|||+||+||||||++++|.|||++||++.+|.+||.||||||++.|++||||||||+|
T Consensus 3 ~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaLtl 82 (336)
T KOG2056|consen 3 MSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKALTL 82 (336)
T ss_pred ccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHhHHHHHHhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccccCC
Q 016001 89 IEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSST 168 (397)
Q Consensus 89 LEYLLkNGSErvVdd~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~LreER~KAkk~R~Ky~G~sS~ 168 (397)
|||||+||||+||+|||+|+++|++|++|+|+|++|+|+|++||+||++|+.||+|+++|++||++|+++|.||.|++..
T Consensus 83 leyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~~~ 162 (336)
T KOG2056|consen 83 LEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFGPG 162 (336)
T ss_pred HHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCcc
Q 016001 169 GITY 172 (397)
Q Consensus 169 ~~~~ 172 (397)
+..+
T Consensus 163 ~~~~ 166 (336)
T KOG2056|consen 163 SISN 166 (336)
T ss_pred cccc
Confidence 5544
No 2
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-51 Score=401.66 Aligned_cols=209 Identities=33% Similarity=0.666 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCC--chhHHHHHHHHHHHhhcC-CCchhhhhh
Q 016001 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK--FSECQMVMNVLWTRLAET-GKDWRYVYK 84 (397)
Q Consensus 8 ~qtvr~ikRkV~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn--~~~y~~IM~vLwKRL~d~-gk~WR~IYK 84 (397)
-..||++..+++++||||+++|.+||||||.|||||++.+|.|||.+||. +++|.++|.+||.|+.+. .+.||+|||
T Consensus 4 m~kVRel~dkandaiMNY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYK 83 (499)
T KOG2057|consen 4 MEKVRELTDKANDAIMNYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYK 83 (499)
T ss_pred hHHHHHHHHHHhHHHhcchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999 999999999999999865 578999999
Q ss_pred HHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHh-hcccc
Q 016001 85 ALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASAN-REKYF 163 (397)
Q Consensus 85 AL~LLEYLLkNGSErvVdd~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~LreER~KAkk~-R~Ky~ 163 (397)
+|+||.|||+|||||||.++|+|+|.|+.|++|+|+|+.|||||||||+|.|+|+++.+|+++|++||+||++. ++||.
T Consensus 84 SLiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDDd~Lq~ERkKAkkddKdKY~ 163 (499)
T KOG2057|consen 84 SLILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDDDLLQAERKKAKKDDKDKYR 163 (499)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHHhccHHHHHHHHHhhccccchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccCCCCccCCCCCCCCCCCCCCCCCCCCC-CCCCCccccCCCC--CCCC----------CCCCCCCCccccccccc
Q 016001 164 GLSSTGITYKSGSASFGTGGYRSSDRYGGS-GDNFRESYKDRDP--YGEE----------KTGNDTFGKSRRGAASE 227 (397)
Q Consensus 164 G~sS~~~~~~sgs~s~g~g~~~~~~~YGg~-~~~~~~syrd~~~--~~~~----------~~~~~~~~~s~~~~~~~ 227 (397)
|+.+..+ |+++++.+|... .+-|..-|.-+++ .-.+ -.-.++++++|+..+++
T Consensus 164 G~~qd~m-----------ggf~~SekydpepkS~wDeeWDKe~Saf~fSdklgel~DkigSk~ddn~S~fr~kdRed 229 (499)
T KOG2057|consen 164 GFDQDDM-----------GGFGSSEKYDPEPKSGWDEEWDKEDSAFFFSDKLGELDDKIGSKEDDNFSFFRNKDRED 229 (499)
T ss_pred ccchhhc-----------cccccccccCCCccccccccccccccccchhhhhhhhhhhhcCeeccchhhhhccCCCC
Confidence 9988665 234455666543 2334444544444 1000 01145677777666665
No 3
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=100.00 E-value=1.5e-49 Score=344.25 Aligned_cols=123 Identities=51% Similarity=0.940 Sum_probs=121.2
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 016001 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (397)
Q Consensus 27 e~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~ 106 (397)
|+|++|+||||||||||++++|++||++||++++|.+||++||+||.+.+++||||||||+||||||+||||+||+|+|+
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHHH
Q 016001 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQ 149 (397)
Q Consensus 107 hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~Lr 149 (397)
|+++|+.|++|+|+|++|+|+|++||+||++|++||+|+++|+
T Consensus 81 ~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~D~~~L~ 123 (123)
T cd03571 81 NLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDERLR 123 (123)
T ss_pred hHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhCCHhhcC
Confidence 9999999999999999999999999999999999999999985
No 4
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=100.00 E-value=2.5e-43 Score=300.55 Aligned_cols=124 Identities=52% Similarity=0.931 Sum_probs=114.4
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHh-hcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 016001 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRL-AETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (397)
Q Consensus 25 ySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL-~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd 103 (397)
|||+|++|+||||+|||||++++|+|||++||++.+|.+||++||+|| ...+++||++||||+||+|||+||+++|+.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999 7789999999999999999999999999999
Q ss_pred HHhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHH
Q 016001 104 IIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKI 148 (397)
Q Consensus 104 ~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~L 148 (397)
+|+|++.|+.|++|+|+|++|+|+|++||++|++|++||.|+++|
T Consensus 81 ~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~~L 125 (125)
T PF01417_consen 81 LRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDERL 125 (125)
T ss_dssp HHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999999999999999987
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=100.00 E-value=5e-35 Score=249.78 Aligned_cols=126 Identities=39% Similarity=0.708 Sum_probs=123.3
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 016001 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (397)
Q Consensus 26 Se~E~KVrEATsNDpWGPs~slM~EIA~aTyn~-~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~ 104 (397)
+++|++|++|||+|+|||+++.|.+|+++||++ ..|..||.+||+||.+.+ +||+|||||+||+|||+||+++|+.++
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~-~w~~v~KsL~llh~ll~~G~~~~~~~~ 79 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA 79 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 589999999999999999999999999999999 999999999999999987 999999999999999999999999999
Q ss_pred HhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHHHHHH
Q 016001 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR 152 (397)
Q Consensus 105 r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~LreER 152 (397)
+.|...|..|.+|+|+|++|+|+|.+||++|+.|.++|.|.++|++||
T Consensus 80 ~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~er 127 (127)
T smart00273 80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127 (127)
T ss_pred HHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHHcCHHHHhccC
Confidence 999999999999999999999999999999999999999999999987
No 6
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=99.92 E-value=2.8e-25 Score=193.24 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=107.7
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchhhh-hhHHHHHHHHHHcCCHhHHHHHHhh
Q 016001 30 QKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYV-YKALAVIEYLISHGSERAVDDIIEH 107 (397)
Q Consensus 30 ~KVrEATsNDpWGPs~slM~EIA~aTyn~-~~y~~IM~vLwKRL~d~gk~WR~I-YKAL~LLEYLLkNGSErvVdd~r~h 107 (397)
.+|+.||+||+|||++.+|.|||+.||+. ..|.+||++|.+||++++ +|| +|||.||.||+.+|++.|+.|+|.|
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~---~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS---PHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 47899999999999999999999999996 889999999999999876 999 9999999999999999999999999
Q ss_pred hhhhhcccceee-eCC-CCcchhhHHHHHHHHHHHhhcCh
Q 016001 108 TFQISSLSSFEY-VEP-SGKDMGINVRKKAENIVALLNNK 145 (397)
Q Consensus 108 i~~I~~L~~FqY-iD~-~GkDqGinVReKAk~IveLL~D~ 145 (397)
.++|+.+++|++ .|+ .|.+.|..||.+|++++++|-..
T Consensus 81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 999999999999 688 99999999999999999998654
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.89 E-value=4.1e-23 Score=172.93 Aligned_cols=113 Identities=27% Similarity=0.404 Sum_probs=104.8
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 016001 29 EQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (397)
Q Consensus 29 E~KVrEATsNDpWGPs~slM~EIA~aTyn~-~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~h 107 (397)
|++|.+||++++|||+...|.+|++.+++. ..+.+||..||+||... +|+++||||+|||||++||+++|..+++.+
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 789999999999999999999999999987 56799999999999876 999999999999999999999999999999
Q ss_pred hhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcC
Q 016001 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (397)
Q Consensus 108 i~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D 144 (397)
.++++.++ |+|.+..|.++|.+||+|+++|+++..|
T Consensus 80 ~~~~~l~~-~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 80 DFAVELLK-FDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred HHHHHHHH-hhccccccCCCChHHHHHHHHHHHHHhC
Confidence 98888664 6888888999999999999999998754
No 8
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.79 E-value=7.5e-19 Score=149.04 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=103.1
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 016001 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (397)
Q Consensus 28 ~E~KVrEATsNDpWGPs~slM~EIA~aTyn-~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~ 106 (397)
+|+.|..||++++|+|..+.|.+|..+|++ ...+..||..|++|+.+ ++|+++||||+||.+||++|++.|+.+++.
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~--~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD--RNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 368899999999999999999999999999 89999999999999998 799999999999999999999999999999
Q ss_pred hhhhhhcccceeeeCC-CCcchhhHHHHHHHHHHHhh
Q 016001 107 HTFQISSLSSFEYVEP-SGKDMGINVRKKAENIVALL 142 (397)
Q Consensus 107 hi~~I~~L~~FqYiD~-~GkDqGinVReKAk~IveLL 142 (397)
|...| .|..|.+.+. .|.|+|..||..|+-|.+.|
T Consensus 79 ~~~~l-~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl 114 (117)
T cd03564 79 RRGWL-NLSNFLDKSSSLGYGYSAFIRAYARYLDERL 114 (117)
T ss_pred ccCee-eccccccCCCCCchhhhHHHHHHHHHHHHHH
Confidence 96666 5678888765 68899999999999988765
No 9
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=98.69 E-value=6.6e-08 Score=91.80 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=83.4
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHH
Q 016001 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDII 105 (397)
Q Consensus 26 Se~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r 105 (397)
+++|+-|..||+.+.-+|..+.+..|..+|+.......++..|.+||... ++|..++|+|.||..||+-|++.++.++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~-~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLT-RNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS--SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 57889999999999999999999999999999667888999999999774 58999999999999999999999999998
Q ss_pred hhhhhhhcccceeeeC---CCCcchhhHHHHHHHHHH
Q 016001 106 EHTFQISSLSSFEYVE---PSGKDMGINVRKKAENIV 139 (397)
Q Consensus 106 ~hi~~I~~L~~FqYiD---~~GkDqGinVReKAk~Iv 139 (397)
.+...+..+..+.-.| ..+-++|.-||.=|+-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~ 117 (280)
T PF07651_consen 81 RYNRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLD 117 (280)
T ss_dssp HTT-----TT---T---SSCHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhhccccccccCCccccchhHHHHHHHHHHH
Confidence 8776666665553322 345678888888876554
No 10
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=7.3e-06 Score=86.18 Aligned_cols=114 Identities=25% Similarity=0.355 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 016001 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (397)
Q Consensus 24 nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~-~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVd 102 (397)
.++.+++-|..||+.|..+|..+.+..|-.+|-.. ....-+...|-+||... ++|-.+||||+||..||++|.+.+..
T Consensus 20 ~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~T-rnW~VAlKsLIliH~ll~~G~~~f~~ 98 (491)
T KOG0251|consen 20 AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKT-RNWTVALKALILIHRLLKEGDPSFEQ 98 (491)
T ss_pred hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCC-cceeehHHHHHHHHHHHhcCcHHHHH
Confidence 57999999999999999999999999999999665 67788999999999986 59999999999999999999999999
Q ss_pred HHHhhhhhhhcccceeeeCC---CCcchhhHHHHHHHHHHHh
Q 016001 103 DIIEHTFQISSLSSFEYVEP---SGKDMGINVRKKAENIVAL 141 (397)
Q Consensus 103 d~r~hi~~I~~L~~FqYiD~---~GkDqGinVReKAk~IveL 141 (397)
++...-..+ .|.+| .|. .+-|+..-||.=|.-|=+.
T Consensus 99 ~l~~~~~~l-~lS~F--~d~s~~~~~d~safVR~Ya~YLder 137 (491)
T KOG0251|consen 99 ELLSRNLIL-NLSDF--RDKSSSLTWDMSAFVRTYALYLDER 137 (491)
T ss_pred HHHhccccc-chhhh--hcccccccchhhHHHHHHHHHHHHH
Confidence 887666222 23444 333 3668888999666554433
No 11
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=98.00 E-value=2.6e-05 Score=68.37 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=80.3
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 016001 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (397)
Q Consensus 25 ySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn-~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd 103 (397)
.++++.+|..||+...-.|.-...-+|++.--. .....+++..|.|||.. .+-..++-||+|||+|++||.+.|-.+
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 588999999999988888888888888887433 56678899999999999 588999999999999999999998887
Q ss_pred HHhh--hhhhhcccceeeeCCCCcchhhH--HHHHHHHHHHhh
Q 016001 104 IIEH--TFQISSLSSFEYVEPSGKDMGIN--VRKKAENIVALL 142 (397)
Q Consensus 104 ~r~h--i~~I~~L~~FqYiD~~GkDqGin--VReKAk~IveLL 142 (397)
+-.. +..|..|-.-.+ .+.. ||+|+.+++.-.
T Consensus 81 v~~~~fl~~l~~l~~~~~-------~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSKK-------TDPETPVKEKILELLQEW 116 (140)
T ss_dssp HTSHHHHHHHHHHHHHTT-------THHHSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHccCC-------CCchhHHHHHHHHHHHHH
Confidence 6333 333333222211 2223 999998887644
No 12
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=97.52 E-value=0.00096 Score=58.46 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=76.7
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 016001 29 EQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (397)
Q Consensus 29 E~KVrEATsNDpWGPs~slM~EIA~aTyn-~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~h 107 (397)
|.+|..||+...-.|.-..+-+|++.--. ...-.+.+..|.|||.. ++-..++.||.|||+|++|+...|..++-+.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~--~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNN--KNPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 67899999987777888888888877533 34467899999999996 4788899999999999999988888777544
Q ss_pred hhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhh
Q 016001 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (397)
Q Consensus 108 i~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL 142 (397)
-++ ..|.. .+.+. .....||+|+..++.-.
T Consensus 80 ~fl-~~L~~--l~~~~--~~~~~Vk~kil~li~~W 109 (133)
T smart00288 80 EFL-NELVK--LIKPK--YPLPLVKKRILELIQEW 109 (133)
T ss_pred HHH-HHHHH--HHcCC--CCcHHHHHHHHHHHHHH
Confidence 332 22221 11111 11112999988887644
No 13
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=97.42 E-value=0.0016 Score=58.33 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=78.7
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 016001 29 EQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (397)
Q Consensus 29 E~KVrEATsNDpWGPs~slM~EIA~aTyn-~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~h 107 (397)
|.+|..||+...-.|.-..+-+|++.--. ...-...|..|.|||.. ++-+.++.||.|||-|++|+..+|-.++-.-
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evask 79 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH--KDPNVQLRALTLLDACAENCGKRFHQEVASR 79 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH
Confidence 67899999987777777888888877533 45567799999999986 4778899999999999999999988877433
Q ss_pred hhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhc
Q 016001 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (397)
Q Consensus 108 i~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~ 143 (397)
- .+..|... +.+. .-..|++|+.+++.-..
T Consensus 80 ~-Fl~eL~kl--~~~~---~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 80 D-FTQELKKL--INDR---VHPTVKEKLREVVKQWA 109 (144)
T ss_pred H-HHHHHHHH--hccc---CCHHHHHHHHHHHHHHH
Confidence 2 12222221 1211 34589999988887653
No 14
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=97.39 E-value=0.0018 Score=57.63 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=77.3
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHH
Q 016001 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDII 105 (397)
Q Consensus 27 e~E~KVrEATsNDpWGPs~slM~EIA~aTyn~-~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r 105 (397)
+.+.+|.+||+..--.|.-...-+|++.--.. ..-.+.|..|.|||. .+++-+.++-||+|||-|++|+-.+|-.++-
T Consensus 1 ~~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~-~~~n~~v~l~aL~LLe~~vkNCG~~fh~eia 79 (141)
T cd03565 1 PVGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLN-GNKNHKEVMLTLTVLETCVKNCGHRFHVLVA 79 (141)
T ss_pred CHhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 35789999999766666666777777765332 345789999999996 4568889999999999999999999888774
Q ss_pred hhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhc
Q 016001 106 EHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (397)
Q Consensus 106 ~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~ 143 (397)
..-++=+.|... +.+++ +.-..|++|+.+|+.-..
T Consensus 80 sk~Fl~e~L~~~--i~~~~-~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 80 KKDFIKDVLVKL--INPKN-NPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHhhhHHHHHH--HcccC-CCcHHHHHHHHHHHHHHH
Confidence 332211112111 11111 123468888887776543
No 15
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=97.37 E-value=0.0022 Score=55.97 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=79.4
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhh
Q 016001 29 EQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (397)
Q Consensus 29 E~KVrEATsNDpWGPs~slM~EIA~aTyn-~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~h 107 (397)
+..|.+||+...-.|.-..+.+|++.-.. ...-.+.+..|.|||... +-...+-||.|||.|++||...|-.++-..
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~ 79 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADK 79 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhH
Confidence 46789999986666777778888877543 345678999999999974 778999999999999999999988877664
Q ss_pred hhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhc
Q 016001 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (397)
Q Consensus 108 i~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~ 143 (397)
-++.+ |..+ +... ...-..||+|+.+++.-..
T Consensus 80 ~fl~~-l~~l--~~~~-~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 80 EFLLE-LVKI--AKNS-PKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHH-HHHH--hCCC-CCCCHHHHHHHHHHHHHHH
Confidence 44333 2222 1111 1234689999988876553
No 16
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=97.32 E-value=0.0039 Score=55.60 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=80.0
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 016001 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (397)
Q Consensus 25 ySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn-~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd 103 (397)
.++++.+|.+||+...-.|.-..+-+|++.--. ...-.+.+..|.|||.. ++-+.++-||.|||.|++|+...|-.+
T Consensus 2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 2 VSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred cchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 478899999999977677777787777776433 34467899999999987 578999999999999999998887777
Q ss_pred HHhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhc
Q 016001 104 IIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (397)
Q Consensus 104 ~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~ 143 (397)
+-+--++ ..|... +.+ ..-..||+|+-+++.-..
T Consensus 80 vas~~fl-~~l~~l--~~~---~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 80 VASREFM-DELKDL--IKT---TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HhhHHHH-HHHHHH--Hcc---cCCHHHHHHHHHHHHHHH
Confidence 6443221 222211 111 233589999888876543
No 17
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=97.18 E-value=0.0045 Score=55.38 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHH
Q 016001 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDII 105 (397)
Q Consensus 27 e~E~KVrEATsNDpWGPs~slM~EIA~aTyn-~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r 105 (397)
++|..|..||+.-.-.|.-..+-+|++.-.. ...-.+.+..|.|||... +-+.++-||.|||.|++|+-.+|-.++-
T Consensus 1 ~~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~eva 78 (139)
T cd03567 1 SLEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVG 78 (139)
T ss_pred CHHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3688999999977667777778888877533 334567899999999854 5778999999999999999999887774
Q ss_pred hhhh---hhhcccceeeeCCCCcchhhHHHHHHHHHHHhhc
Q 016001 106 EHTF---QISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (397)
Q Consensus 106 ~hi~---~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~ 143 (397)
.--+ +++.+.. +| .|...-..||+|+.+++.--.
T Consensus 79 s~~Fl~el~kl~~~-k~---~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 79 KFRFLNELIKLVSP-KY---LGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred hHHHHHHHHHHhcc-cc---CCCCCCHHHHHHHHHHHHHHH
Confidence 4332 2222221 22 133344799999988887664
No 18
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.021 Score=60.39 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=81.2
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHcC-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 016001 28 IEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (397)
Q Consensus 28 ~E~KVrEATsNDpWGPs~slM~EIA~aTy-n~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~ 106 (397)
+..+|..||+..--+|.=.+--|||+.-- ......++...|.|||..+.. +..|=||+|||=|++|+-+.|=..+-+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~ 79 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVAS 79 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45789999998777777777788887752 234456899999999998754 778889999999999998887655544
Q ss_pred hhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhh
Q 016001 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (397)
Q Consensus 107 hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL 142 (397)
--++=+.++.|++.. .-..||+|+-.+|+.=
T Consensus 80 k~fL~emVk~~k~~~-----~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNKP-----RDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccccCC-----cchhHHHHHHHHHHHH
Confidence 444444666776632 4569999998888753
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=90.95 E-value=2.9 Score=44.19 Aligned_cols=122 Identities=17% Similarity=0.245 Sum_probs=80.7
Q ss_pred CCHHHHHHHHhhc----CCCCCCCHHHHHHHHHH-cCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHh
Q 016001 25 VPEIEQKVLDATD----NEPWGPHGTALAEIAQA-TKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSER 99 (397)
Q Consensus 25 ySe~E~KVrEATs----NDpWGPs~slM~EIA~a-Tyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSEr 99 (397)
.+++|..|..||+ +|+|+ ++-+||+. +-+.+--...|+.|.|||+.. .--.|+-||+||+-|+.|+-.+
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~----~IlDvCD~v~~~~~~~kd~lk~i~KRln~~--dphV~L~AlTLlda~~~NCg~~ 79 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWS----LILDVCDKVGSDPDGGKDCLKAIMKRLNHK--DPHVVLQALTLLDACVANCGKR 79 (462)
T ss_pred cchHHHHHHHhcCcccccccHH----HHHHHHHhhcCCCcccHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhcchH
Confidence 5789999999998 37885 45566655 334455667899999999986 4557899999999999999999
Q ss_pred HHHHHH--hhhhhhhcccceeeeCCCCcchhhHHHHHHHHHH----HhhcChHHHHHHHHHHHHhhc
Q 016001 100 AVDDII--EHTFQISSLSSFEYVEPSGKDMGINVRKKAENIV----ALLNNKDKIQEVRNKASANRE 160 (397)
Q Consensus 100 vVdd~r--~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~Iv----eLL~D~e~LreER~KAkk~R~ 160 (397)
+..++. +-...++.|-.= . --..|++|-+.|+ +-..++..|.-.-.-.+++|.
T Consensus 80 ~r~EVsSr~F~~el~al~~~-----~---~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 80 FRLEVSSRDFTTELRALIES-----K---AHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKLKE 138 (462)
T ss_pred HHHHHhhhhHHHHHHHHHhh-----c---ccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 998874 444444443221 1 1124555555544 444444444444444455554
No 20
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.09 E-value=13 Score=40.20 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=26.3
Q ss_pred CCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhh
Q 016001 76 GKDWRYVYKALAVIEYLISHGSERAVDDIIEHT 108 (397)
Q Consensus 76 gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~hi 108 (397)
+.+|--+| ||++|||+++||-|+|=+++-...
T Consensus 57 Pqe~EAl~-altvLe~cmkncGekfH~evgkfr 88 (594)
T KOG1086|consen 57 PQEWEALQ-ALTVLEYCMKNCGEKFHEEVGKFR 88 (594)
T ss_pred hhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56887765 899999999999999888765443
No 21
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=69.99 E-value=9.4 Score=43.87 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=82.1
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhh
Q 016001 30 QKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTF 109 (397)
Q Consensus 30 ~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~hi~ 109 (397)
.-|+.|++.+...|-.+...-|.-.|++...-... =...+|+.- ..+-...+|.+.||.=||+-|.+.++.+...+..
T Consensus 9 ~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa~~F-Wt~ik~~PL-~~~~VltwKfchllHKvLreGHpsal~es~r~r~ 86 (980)
T KOG0980|consen 9 EAVQKAISKDETPPKRKHVRTIIVGTHDEKSSKIF-WTTIKRQPL-ENHEVLTWKFCHLLHKVLREGHPSALEESQRYKK 86 (980)
T ss_pred HHHHHHhccccCCCchhhhhheeeeecccccchhH-HHHhhcccc-ccchHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 46889999999999999999999999886443322 222233332 2355678899999999999999999999999999
Q ss_pred hhhcccceeeeCCCCcchhhHHHHHHHHHHHh
Q 016001 110 QISSLSSFEYVEPSGKDMGINVRKKAENIVAL 141 (397)
Q Consensus 110 ~I~~L~~FqYiD~~GkDqGinVReKAk~IveL 141 (397)
.|+.|..+.-.- -.+.|.-||.-+|-|..=
T Consensus 87 ~i~~l~r~w~~l--s~~Yg~lI~~Y~klL~~K 116 (980)
T KOG0980|consen 87 WITQLGRMWGHL--SDGYGPLIRAYVKLLHDK 116 (980)
T ss_pred HHHHHHHHhccc--cccchHHHHHHHHHHHHH
Confidence 999988762211 157888888887765543
No 22
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=69.85 E-value=27 Score=29.17 Aligned_cols=105 Identities=11% Similarity=0.153 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 016001 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (397)
Q Consensus 27 e~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~ 106 (397)
+.+..+++-|.+...+|.-..|..+|..- ......|+..|.++|...+. .+-+-.|-|++-+++|.-.+....+..
T Consensus 3 ~~~~~l~~L~~~~~S~~~I~~lt~~a~~~--~~~a~~iv~~i~~~i~~~~~--~~KL~~LYL~dsIvkn~~~~~~~~~~~ 78 (114)
T cd03562 3 DYNALLEKLTFNKNSQPSIQTLTKLAIEN--RKHAKEIVEIIEKHIKKCPP--EQKLPLLYLLDSIVKNVGRKYKEFFSE 78 (114)
T ss_pred cHHHHHHHHHcCcccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHHHcccchHHHHHH
Confidence 34556666677665555555555555443 46778899999999987643 677789999999999977766665555
Q ss_pred hh-hhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcC
Q 016001 107 HT-FQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (397)
Q Consensus 107 hi-~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D 144 (397)
.+ .++. .-|+ .....+|+|..+|++.=++
T Consensus 79 ~~~~~f~--~~~~-------~~~~~~r~kl~rl~~iW~~ 108 (114)
T cd03562 79 FLVPLFL--DAYE-------KVDEKTRKKLERLLNIWEE 108 (114)
T ss_pred HHHHHHH--HHHH-------hCCHHHHHHHHHHHHHccC
Confidence 42 2221 1122 1234788888888876543
No 23
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=59.98 E-value=40 Score=28.30 Aligned_cols=95 Identities=5% Similarity=0.088 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHcC-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhh-hhhcccceeee
Q 016001 43 PHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTF-QISSLSSFEYV 120 (397)
Q Consensus 43 Ps~slM~EIA~aTy-n~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~hi~-~I~~L~~FqYi 120 (397)
++...++.+....- +.+....|+++|.+.+...+.+ +-+-.|-|++-+++|+.......++..+. .|.. -|..+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~--~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~--~~~~~ 86 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPP--RKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQD--ALRDV 86 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--ceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHH
Confidence 56666666666653 3456678999999999876543 44568889999999987664444433321 1111 12222
Q ss_pred CCCCcchhhHHHHHHHHHHHhhcC
Q 016001 121 EPSGKDMGINVRKKAENIVALLNN 144 (397)
Q Consensus 121 D~~GkDqGinVReKAk~IveLL~D 144 (397)
..... ..+|+|..+|+++=.+
T Consensus 87 ~~~~~---~~~~~ki~kll~iW~~ 107 (121)
T smart00582 87 LGAAN---DETKKKIRRLLNIWEE 107 (121)
T ss_pred HHhCC---HHHHHHHHHHHHHHhc
Confidence 11111 4789999999998765
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=54.21 E-value=59 Score=37.65 Aligned_cols=107 Identities=16% Similarity=0.252 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhcCC--CchhhhhhHHHHH--HHHHHcCCHhHHHHHHhhhhhhhcc--ccee
Q 016001 45 GTALAEIAQATKKFSECQMVMNVLWTRLAETG--KDWRYVYKALAVI--EYLISHGSERAVDDIIEHTFQISSL--SSFE 118 (397)
Q Consensus 45 ~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~g--k~WR~IYKAL~LL--EYLLkNGSErvVdd~r~hi~~I~~L--~~Fq 118 (397)
.+++..+-.-+.++++..+++++||.-+.+.+ -.+..|+.-|+|+ +|-++--.-.+|++|...|.+=+.- -+|+
T Consensus 368 ~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~ 447 (1102)
T KOG1924|consen 368 EELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFK 447 (1102)
T ss_pred HHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 35555666778889999999999999998864 4577777766665 3444444445666665555444432 3555
Q ss_pred eeCCCCcchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhh
Q 016001 119 YVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANR 159 (397)
Q Consensus 119 YiD~~GkDqGinVReKAk~IveLL~D~e~LreER~KAkk~R 159 (397)
|..-=..| ..+|++-+.|.+++++-+++|..+-
T Consensus 448 yr~~l~id--------~~~liD~~vdkak~eeseqkA~e~~ 480 (1102)
T KOG1924|consen 448 YRFRLDID--------LTELIDKMVDKAKAEESEQKAAELE 480 (1102)
T ss_pred hhhcccCc--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53211112 2344455555555555555444443
No 25
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.63 E-value=9.6 Score=43.21 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=34.5
Q ss_pred CHHHHHHH--HhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCc
Q 016001 26 PEIEQKVL--DATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKD 78 (397)
Q Consensus 26 Se~E~KVr--EATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~ 78 (397)
++.|+.|. |+|+.+.|||+ -+..|+...-..+|+-|..|+.+++++
T Consensus 16 ~~~eril~~~estDtd~~gP~-------lRs~~d~~~~~~~~e~Le~~ir~~d~E 63 (800)
T KOG2176|consen 16 EEHERILLEIESTDTDDWGPT-------LRSVYDGNQHKPVMEKLENRIRNHDKE 63 (800)
T ss_pred HHHHHHHHHHhccchhhhhhH-------HHHHHccCCcchHHHHHHHHHHhhHHH
Confidence 45555554 88999999998 667777777778888888777776544
No 26
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=50.75 E-value=71 Score=26.97 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=55.7
Q ss_pred chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceeeeCCCCcchhhHHHHHHHH
Q 016001 58 FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAEN 137 (397)
Q Consensus 58 ~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~ 137 (397)
.+.+..|++.|.+.|.+. +||.=|=|.--|-.+++..-+.++..+-+-...+-.| . .|.-.+||.-|+.
T Consensus 22 ~~~l~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-----~----~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-----S----ADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----cCCchhHHHHHHH
Confidence 355677999998888876 8999999999999999988877766443333222221 1 1344589999999
Q ss_pred HHHhhcC
Q 016001 138 IVALLNN 144 (397)
Q Consensus 138 IveLL~D 144 (397)
|-.||.|
T Consensus 91 Ld~llkd 97 (97)
T PF12755_consen 91 LDRLLKD 97 (97)
T ss_pred HHHHhcC
Confidence 9999986
No 27
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=41.38 E-value=96 Score=36.40 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=55.3
Q ss_pred HHHHHHHHH--HHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHH-----------HHHHHhh
Q 016001 7 FDQTVREIK--REVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMN-----------VLWTRLA 73 (397)
Q Consensus 7 ~~qtvr~ik--RkV~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~-----------vLwKRL~ 73 (397)
...+.+-|+ .++.+.+.+.+|.|+...+--.+ -=+|+-++..++...-|..+.-++|++ ++.|||.
T Consensus 567 Iea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~g-lg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk 645 (1163)
T COG5602 567 IEATQRTIKALEQIIDKIKDMEESEKANKTLPGG-LGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLK 645 (1163)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCc-CCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHH
Confidence 334555555 56667777778777654432111 126788899999999999987777765 5678998
Q ss_pred cCCCchhhhhhHHH
Q 016001 74 ETGKDWRYVYKALA 87 (397)
Q Consensus 74 d~gk~WR~IYKAL~ 87 (397)
.+.++||.+...+.
T Consensus 646 ~Kd~EWR~~kRew~ 659 (1163)
T COG5602 646 MKDEEWRSCKREWN 659 (1163)
T ss_pred HhhHHHHHHHHHHH
Confidence 99999998765443
No 28
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.51 E-value=1.6e+02 Score=35.58 Aligned_cols=121 Identities=12% Similarity=-0.029 Sum_probs=70.8
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhcCC-------CchhhhhhHHHHHHHHHHcCCHhHH
Q 016001 31 KVLDATDNEPWGPHGTALAEIAQATKKF--SECQMVMNVLWTRLAETG-------KDWRYVYKALAVIEYLISHGSERAV 101 (397)
Q Consensus 31 KVrEATsNDpWGPs~slM~EIA~aTyn~--~~y~~IM~vLwKRL~d~g-------k~WR~IYKAL~LLEYLLkNGSErvV 101 (397)
..+.|-+.+-|+|.+..-.+|-...|.- ++-..|-.+|-.-|.... +.|.++|..|-++.+=.-+-=-.+.
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 4567777888888887777887777765 333444455555555432 4555555555444443332222233
Q ss_pred HHHHhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHHHHHHHHH
Q 016001 102 DDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKA 155 (397)
Q Consensus 102 dd~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~LreER~KA 155 (397)
..++.++...=.+..++|.|. .-..|-.+...|.+.|.|+-....-+.+.
T Consensus 489 ~~ls~~vr~~I~~~k~~~~d~----~~k~i~~~i~~i~~~lpD~~s~~~~~~~f 538 (1266)
T KOG1525|consen 489 SRLSEEVRDYITLSKTPNTDD----SMKKIFSKIVKISENLPDPSSRSYDSMKF 538 (1266)
T ss_pred HHHHHHHHHHhccccCCCccH----hHHHHHHHHHHHHHhcCCchhhhhHHHHH
Confidence 334444433334566666653 44577778888888888886665555554
No 29
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=34.74 E-value=52 Score=21.80 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCHhHHHHHHh
Q 016001 87 AVIEYLISHGSERAVDDIIE 106 (397)
Q Consensus 87 ~LLEYLLkNGSErvVdd~r~ 106 (397)
.|++||+++|-......++.
T Consensus 6 lI~~YL~~~Gy~~tA~~f~~ 25 (27)
T PF08513_consen 6 LIYDYLVENGYKETAKAFAK 25 (27)
T ss_dssp HHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHh
Confidence 58899999999887766643
No 30
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=34.70 E-value=68 Score=33.80 Aligned_cols=41 Identities=32% Similarity=0.393 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCccCCCc
Q 016001 266 PSQSSSIPSNKYDDDFDD-FDPRGTSSNKSAAGNSKQVDPFG 306 (397)
Q Consensus 266 ~~~~~s~~~~~~~dd~dd-f~prg~s~~~~~~~~~~~~dlfg 306 (397)
++...++|.|...-|.|| ||--..|..+++--.---.|+||
T Consensus 314 S~VkknaP~nkssgdl~dLFDgsa~s~~gaadlfG~faDf~~ 355 (499)
T KOG2057|consen 314 SPVKKNAPRNKSSGDLDDLFDGSAPSPAGAADLFGAFADFFG 355 (499)
T ss_pred CcccccCCcccccccHHHHhcCcCCCCCCchhhcCchhhhhh
Confidence 344445566655556664 88544333333333333334444
No 31
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=34.05 E-value=65 Score=27.37 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHcCCchhHHHHHHHHHHHhhc--C-----------CCchhhhhhHHH
Q 016001 43 PHGTALAEIAQATKKFSECQMVMNVLWTRLAE--T-----------GKDWRYVYKALA 87 (397)
Q Consensus 43 Ps~slM~EIA~aTyn~~~y~~IM~vLwKRL~d--~-----------gk~WR~IYKAL~ 87 (397)
++..+|..|-..+ +++......||+++.. . +..||.+|-.+.
T Consensus 19 ~~~~QL~~iE~~n---p~l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 19 CSPEQLRRIEDNN---PHLIEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLK 73 (109)
T ss_pred CCHHHHHHHHHhC---CCcchhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHHH
Confidence 3667777777766 5566678899999852 1 358999997543
No 32
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=33.92 E-value=47 Score=21.17 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCHhHHHHHHh
Q 016001 87 AVIEYLISHGSERAVDDIIE 106 (397)
Q Consensus 87 ~LLEYLLkNGSErvVdd~r~ 106 (397)
.|++||+.+|-......++.
T Consensus 9 lI~~yL~~~g~~~ta~~l~~ 28 (34)
T smart00667 9 LILEYLLRNGYEETAETLQK 28 (34)
T ss_pred HHHHHHHHcCHHHHHHHHHH
Confidence 49999999999887766554
No 33
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=29.40 E-value=1.1e+02 Score=25.71 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=44.3
Q ss_pred HhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCC--chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHH
Q 016001 20 LKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK--FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLIS 94 (397)
Q Consensus 20 n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn--~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLk 94 (397)
-++..++.-+.+||.+. -..|..|+..... .+.|.+|+..|+|.+.+...+ |-++-.+|+.|||
T Consensus 31 pVL~~~~D~d~rVRy~A--------cEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~---Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 31 PVLKCFDDQDSRVRYYA--------CEALYNISKVARGEILPYFNEIFDALCKLSADPDEN---VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHcCCCcHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhc
Confidence 34445566666777553 3455566655433 356899999999999998655 6667789998886
No 34
>COG4907 Predicted membrane protein [Function unknown]
Probab=27.61 E-value=79 Score=34.62 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHhhcChHHHHH
Q 016001 128 GINVRKKAENIVALLNNKDKIQE 150 (397)
Q Consensus 128 GinVReKAk~IveLL~D~e~Lre 150 (397)
.+.|-+|.-+-..++.|.|.|++
T Consensus 521 ALGV~dkVvkam~~~~~~e~ikd 543 (595)
T COG4907 521 ALGVSDKVVKAMRKALDMEIIKD 543 (595)
T ss_pred hhccHHHHHHHHHHhCcHhHhcc
Confidence 45777887777888889998877
No 35
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.20 E-value=62 Score=27.37 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 016001 45 GTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALA 87 (397)
Q Consensus 45 ~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~ 87 (397)
+...++|+.+. .++|.+||+++- +..++-.-|+..|||.
T Consensus 33 gDDvqQL~~~~--e~eF~eim~lvG--M~sKPLHVrRlqKAL~ 71 (82)
T PF04904_consen 33 GDDVQQLCEAG--EEEFLEIMALVG--MASKPLHVRRLQKALQ 71 (82)
T ss_pred ChhHHHHHhcC--hHHHHHHHHHhC--ccCccHHHHHHHHHHH
Confidence 34456666654 388999999986 7788889999999975
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.46 E-value=3.3e+02 Score=30.37 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=10.3
Q ss_pred HHHHHHhhcChHHHHHHHHH
Q 016001 135 AENIVALLNNKDKIQEVRNK 154 (397)
Q Consensus 135 Ak~IveLL~D~e~LreER~K 154 (397)
+++-..-|.--|++++.|+.
T Consensus 712 ~key~~klek~eki~eir~q 731 (840)
T KOG2003|consen 712 AKEYADKLEKAEKIKEIREQ 731 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445445555555544
No 37
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.28 E-value=2.7e+02 Score=23.14 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHcC--CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHh
Q 016001 44 HGTALAEIAQATK--KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSER 99 (397)
Q Consensus 44 s~slM~EIA~aTy--n~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSEr 99 (397)
...+|..|++.-- ...-..+|+..+.+-|.+..+.+-..|=||.-|..| |+|-
T Consensus 26 AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l---G~~~ 80 (92)
T PF07571_consen 26 AASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL---GPEA 80 (92)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHH
Confidence 3567777776621 124567899999999999999999999999999998 6643
No 38
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=22.77 E-value=1e+02 Score=32.02 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=33.5
Q ss_pred cchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhccccc
Q 016001 125 KDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFG 164 (397)
Q Consensus 125 kDqGinVReKAk~IveLL~D~e~LreER~KAkk~R~Ky~G 164 (397)
.|+-..-+.|++.+++||++.+.|...+.++++.-.+-.|
T Consensus 138 ~~~~~~~~~~~ek~~~Ll~~~~~f~~~e~ri~~~Y~ee~G 177 (361)
T PF08467_consen 138 EPKSLENPARVEKFINLLEKKHVFSATEVRIKKVYEEEIG 177 (361)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788999999999999999999988888876666555
No 39
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=22.60 E-value=26 Score=25.63 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHcCCHhHHHHHHhh
Q 016001 82 VYKALAVIEYLISHGSERAVDDIIEH 107 (397)
Q Consensus 82 IYKAL~LLEYLLkNGSErvVdd~r~h 107 (397)
+-|+|.||++|..++.+--+.++-++
T Consensus 2 l~ral~iL~~l~~~~~~~t~~eia~~ 27 (52)
T PF09339_consen 2 LERALRILEALAESGGPLTLSEIARA 27 (52)
T ss_dssp HHHHHHHHHCHHCTBSCEEHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 56899999999999987444444443
No 40
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.66 E-value=2.7e+02 Score=31.47 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=61.5
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 016001 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (397)
Q Consensus 26 Se~E~KVrEATsNDpWGPs~slM~EIA~aTyn~-~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~ 104 (397)
|..+..+..||+.+..-+.-...-||....... ..+..-|..|.+|++ ..+-+...=+|.|+++-++||--.|..++
T Consensus 7 ~~~~~l~~~at~~~~~~~~~e~~~e~~d~ir~~~~~~k~slr~~~~~i~--h~np~~~~~~~~~~d~cvkn~G~gv~~ei 84 (634)
T KOG1818|consen 7 SAFKRLIEKATSETLGSGDWEAILEISDMIRSGGVPPKPSLRGIKKRID--HENPNVQLFTLKLTDHCVKNCGHGVHCEI 84 (634)
T ss_pred hHHHhhhhhhhhhhhcCcchhhhhhHHHHHHhcCCCCchhHHHHHHHHh--ccCCCcccchhhhHHHHHhcCCcchhHHH
Confidence 446677788888776555556666666665332 344556788888887 44666677799999999999987777765
Q ss_pred --Hhhhhhhhcc
Q 016001 105 --IEHTFQISSL 114 (397)
Q Consensus 105 --r~hi~~I~~L 114 (397)
|+.+..|..+
T Consensus 85 ~tre~m~~~~~~ 96 (634)
T KOG1818|consen 85 ATREFMDLLKSL 96 (634)
T ss_pred HHHHHHHHHHhh
Confidence 6667777764
No 41
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=21.15 E-value=1.3e+02 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHhhccc
Q 016001 130 NVRKKAENIVALLNNKDKIQEVRNKASANREKY 162 (397)
Q Consensus 130 nVReKAk~IveLL~D~e~LreER~KAkk~R~Ky 162 (397)
++.+-|+.|.+||+|++..++.++++++...+|
T Consensus 305 ~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 305 DVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 477889999999999999998888887665554
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.11 E-value=3e+02 Score=28.85 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=84.9
Q ss_pred HHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCc----hhHHHH--HHHHHHHhhcCCCchhhhhhHHHHHHH
Q 016001 18 VNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF----SECQMV--MNVLWTRLAETGKDWRYVYKALAVIEY 91 (397)
Q Consensus 18 V~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~----~~y~~I--M~vLwKRL~d~gk~WR~IYKAL~LLEY 91 (397)
+|+.|+...-.+..+.-.++++|-...++.|-.|+-.-.+. ..|..| ..+|..-|..++..-|-.-|++.||.|
T Consensus 158 ~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 158 SQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSL 237 (342)
T ss_pred HHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 44556666666666677788888898899999998876654 222222 456777778888899999999999999
Q ss_pred HHHcCCHhHHHHHHhhhh----------------------hhhcccceeeeCCCCc---chhhHHHHHHHHHHHhhcChH
Q 016001 92 LISHGSERAVDDIIEHTF----------------------QISSLSSFEYVEPSGK---DMGINVRKKAENIVALLNNKD 146 (397)
Q Consensus 92 LLkNGSErvVdd~r~hi~----------------------~I~~L~~FqYiD~~Gk---DqGinVReKAk~IveLL~D~e 146 (397)
|+.--....- .+..+.+ ++..|..| . .++ +--.+-|+.-++.+.++.+-+
T Consensus 238 Ll~~~~s~~d-~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~--~--~~~~~~~~~~~l~e~l~~~~q~~~~~~ 312 (342)
T KOG2160|consen 238 LLQEDKSDED-IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL--S--TRKELFVSLLNLEELLKSLIQIISDHA 312 (342)
T ss_pred HHHhhhhhhh-HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH--h--hcchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9975432211 1121111 11111111 1 122 223466677777777777666
Q ss_pred HHHHHHHHHHHhhc
Q 016001 147 KIQEVRNKASANRE 160 (397)
Q Consensus 147 ~LreER~KAkk~R~ 160 (397)
.++.+|+-+.....
T Consensus 313 ~~~~e~~l~~~l~~ 326 (342)
T KOG2160|consen 313 ALEEERQLVNSLWE 326 (342)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777766655443
No 43
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.44 E-value=1.2e+02 Score=28.64 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHh-hccc
Q 016001 130 NVRKKAENIVALLNNKDKIQEVRNKASAN-REKY 162 (397)
Q Consensus 130 nVReKAk~IveLL~D~e~LreER~KAkk~-R~Ky 162 (397)
++.+-|+.|.+|++|++.+.+.++++++. ..+|
T Consensus 322 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~f 355 (371)
T cd04962 322 DVEAMAEYALSLLEDDELWQEFSRAARNRAAERF 355 (371)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 56778999999999999988888888875 4443
No 44
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=20.35 E-value=1.1e+02 Score=27.95 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHhhccc
Q 016001 133 KKAENIVALLNNKDKIQEVRNKASANREKY 162 (397)
Q Consensus 133 eKAk~IveLL~D~e~LreER~KAkk~R~Ky 162 (397)
+-++.|.+|++|++.+++.++.+++...++
T Consensus 332 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 332 ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 678899999999999888887777665543
Done!