Query 016001
Match_columns 397
No_of_seqs 162 out of 415
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 06:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xgw_A Epsin 4; ENTH, enthopro 100.0 1.9E-60 6.5E-65 432.9 16.1 159 9-167 16-175 (176)
2 3onk_A Epsin-3, ENT3; helix, p 100.0 1.1E-58 3.8E-63 411.9 16.9 148 18-165 2-150 (150)
3 1eyh_A Epsin; superhelix of he 100.0 1E-55 3.4E-60 390.1 16.2 143 23-165 1-143 (144)
4 1inz_A EPS15-interacting porte 100.0 1.9E-55 6.4E-60 390.1 1.2 143 10-152 6-148 (148)
5 1vdy_A Hypothetical protein (R 100.0 3.5E-35 1.2E-39 258.7 11.6 117 29-147 13-133 (140)
6 3zyl_A Phosphatidylinositol-bi 99.6 2.4E-15 8.3E-20 143.9 10.8 127 8-138 10-138 (271)
7 3zym_A Phosphatidylinositol-bi 99.6 2.6E-15 8.9E-20 146.0 10.2 127 8-138 10-138 (310)
8 1hx8_A Synapse-enriched clathr 99.2 1E-10 3.4E-15 112.8 10.7 129 9-141 6-147 (299)
9 3rru_A TOM1L1 protein; structu 97.7 0.00034 1.2E-08 61.9 11.9 114 26-143 15-129 (152)
10 1elk_A Target of MYB1; superhe 97.7 0.00048 1.6E-08 60.7 12.0 111 26-144 15-130 (157)
11 1x5b_A Signal transducing adap 97.6 0.00028 9.7E-09 62.7 10.2 127 25-161 13-146 (163)
12 1juq_A ADP-ribosylation factor 97.6 0.0004 1.4E-08 62.3 11.2 114 25-143 11-127 (171)
13 3ldz_A STAM-1, signal transduc 97.6 0.00058 2E-08 59.2 11.3 107 25-142 3-112 (140)
14 3zyq_A Hepatocyte growth facto 97.5 0.00044 1.5E-08 64.1 10.6 128 24-161 5-139 (226)
15 3g2s_A C-terminal fragment of 97.4 0.0014 4.8E-08 57.7 11.6 113 24-142 8-124 (149)
16 1mhq_A ADP-ribosylation factor 97.4 0.0021 7.3E-08 56.3 12.5 111 28-143 2-115 (148)
17 1dvp_A HRS, hepatocyte growth 97.3 0.0016 5.6E-08 59.6 11.3 109 25-143 3-114 (220)
18 1sz9_A PCF11 protein; RNA poly 71.5 24 0.00082 30.4 9.3 106 40-157 22-137 (144)
19 2ijq_A Hypothetical protein; s 69.6 6.3 0.00021 35.2 5.3 84 56-148 46-134 (161)
20 4flb_A Regulation of nuclear P 50.6 86 0.0029 25.7 8.7 97 44-154 20-127 (132)
21 2pk2_A Cyclin-T1, protein TAT; 45.8 11 0.00037 36.9 2.8 24 129-152 232-256 (358)
22 3d9j_A RNA-binding protein 16; 42.5 1.6E+02 0.0054 25.1 10.8 118 26-156 5-136 (145)
23 3ut4_A CTHE_2751, putative unc 38.1 2E+02 0.0068 25.0 9.5 91 33-141 37-127 (134)
24 3fga_B Serine/threonine-protei 32.4 96 0.0033 31.3 7.3 108 29-144 250-366 (403)
25 2b4j_C PC4 and SFRS1 interacti 24.1 79 0.0027 26.2 4.2 66 61-140 8-77 (98)
26 4hfx_A Transcription elongatio 22.9 43 0.0015 27.7 2.3 42 43-87 25-75 (97)
27 2db0_A 253AA long hypothetical 21.2 1.1E+02 0.0037 29.2 4.9 61 25-97 3-64 (253)
No 1
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=100.00 E-value=1.9e-60 Score=432.93 Aligned_cols=159 Identities=42% Similarity=0.788 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHh-hcCCCchhhhhhHHH
Q 016001 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRL-AETGKDWRYVYKALA 87 (397)
Q Consensus 9 qtvr~ikRkV~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL-~d~gk~WR~IYKAL~ 87 (397)
+.+++++|+|+|+|++|||+|++|+||||||||||++++|+|||++||++++|.+||++||+|| .+.+++||||||||+
T Consensus 16 ~~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~ 95 (176)
T 1xgw_A 16 WKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLL 95 (176)
T ss_dssp ------------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999996 678999999999999
Q ss_pred HHHHHHHcCCHhHHHHHHhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccccC
Q 016001 88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSS 167 (397)
Q Consensus 88 LLEYLLkNGSErvVdd~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~LreER~KAkk~R~Ky~G~sS 167 (397)
||||||+||||+||+|+|+|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|+||
T Consensus 96 LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~s 175 (176)
T 1xgw_A 96 LLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSS 175 (176)
T ss_dssp HHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC------------
T ss_pred HHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=100.00 E-value=1.1e-58 Score=411.93 Aligned_cols=148 Identities=39% Similarity=0.714 Sum_probs=133.8
Q ss_pred HHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcC-CCchhhhhhHHHHHHHHHHcC
Q 016001 18 VNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAET-GKDWRYVYKALAVIEYLISHG 96 (397)
Q Consensus 18 V~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~-gk~WR~IYKAL~LLEYLLkNG 96 (397)
+.|+|+||||+|++||||||||||||++++|+|||++||++.+|.+||++||+||.++ +++||||||||+||||||+||
T Consensus 2 ~~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 2 LMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ------CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999999999999999999999999999987 689999999999999999999
Q ss_pred CHhHHHHHHhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccc
Q 016001 97 SERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGL 165 (397)
Q Consensus 97 SErvVdd~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~LreER~KAkk~R~Ky~G~ 165 (397)
||+||+|+|+|+++|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||++|+++|+||.|+
T Consensus 82 se~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~~g~ 150 (150)
T 3onk_A 82 SERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETAKKYKGV 150 (150)
T ss_dssp CHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 3
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=100.00 E-value=1e-55 Score=390.09 Aligned_cols=143 Identities=41% Similarity=0.753 Sum_probs=141.1
Q ss_pred cCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 016001 23 LKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (397)
Q Consensus 23 ~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVd 102 (397)
+|||++|++|+||||||||||++++|++||++||++.+|.+||++||+||.+++++||||||||+||||||+||||+||+
T Consensus 1 ~~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccc
Q 016001 103 DIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGL 165 (397)
Q Consensus 103 d~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~LreER~KAkk~R~Ky~G~ 165 (397)
|+++|++.|++|++|+|+|++|+|||++||+||++|++||+|+++|++||++|+++|+||.|.
T Consensus 81 ~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~~L~~eR~~a~~~r~k~~~~ 143 (144)
T 1eyh_A 81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT 143 (144)
T ss_dssp HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=100.00 E-value=1.9e-55 Score=390.10 Aligned_cols=143 Identities=41% Similarity=0.773 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHH
Q 016001 10 TVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVI 89 (397)
Q Consensus 10 tvr~ikRkV~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LL 89 (397)
++++++|+|+|+|++||++|++|+||||||||||++++|++||++||++.+|.+||++||+||.+++++||||||||+||
T Consensus 6 ~~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~ll 85 (148)
T 1inz_A 6 STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLM 85 (148)
T ss_dssp CCCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHH
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHhHHHHHHhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcChHHHHHHH
Q 016001 90 EYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR 152 (397)
Q Consensus 90 EYLLkNGSErvVdd~r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D~e~LreER 152 (397)
||||+||||+||+++++|++.|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||
T Consensus 86 eyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~L~~eR 148 (148)
T 1inz_A 86 EYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148 (148)
T ss_dssp HHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCSCCCCC
T ss_pred HHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 5
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=100.00 E-value=3.5e-35 Score=258.68 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=110.8
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 016001 29 EQKVLDATDNEPWGPHGTALAEIAQATKKF--SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (397)
Q Consensus 29 E~KVrEATsNDpWGPs~slM~EIA~aTyn~--~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~ 106 (397)
+.||++||+||||||++.+|.|||+.||++ +.|.+||++||+||.++ .|+++||||+||+||++||+++|++++|.
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 468999999999999999999999999997 55899999999999996 58899999999999999999999999999
Q ss_pred hhhhhhcccceeeeCC--CCcchhhHHHHHHHHHHHhhcChHH
Q 016001 107 HTFQISSLSSFEYVEP--SGKDMGINVRKKAENIVALLNNKDK 147 (397)
Q Consensus 107 hi~~I~~L~~FqYiD~--~GkDqGinVReKAk~IveLL~D~e~ 147 (397)
|++.|++|++|+|+++ +|+|+|++||++|++|++||.|++.
T Consensus 91 ~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 91 NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEEN 133 (140)
T ss_dssp TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSS
T ss_pred hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCC
Confidence 9999999999999965 8999999999999999999999873
No 6
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.60 E-value=2.4e-15 Score=143.90 Aligned_cols=127 Identities=22% Similarity=0.338 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCch-hHHHHHHHHHHHhhcCCCchhhhhhHH
Q 016001 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS-ECQMVMNVLWTRLAETGKDWRYVYKAL 86 (397)
Q Consensus 8 ~qtvr~ikRkV~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~-~y~~IM~vLwKRL~d~gk~WR~IYKAL 86 (397)
.|++.+--..+|+.|++ +++|+.|+.||++++|+|..+.+.+|..+|++.. .+..||..|++||. .++|++++|||
T Consensus 10 ~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~--~~~w~v~~KaL 86 (271)
T 3zyl_A 10 GQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKSL 86 (271)
T ss_dssp --CHHHHHHHHHHHHHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred cccHHHHHHHHHhcccc-hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC--CCchHHHHHHH
Confidence 46777767788898888 9999999999999999999999999999999876 46999999999999 47999999999
Q ss_pred HHHHHHHHcCCHhHHHHHHhhhhhhhcccceeeeC-CCCcchhhHHHHHHHHH
Q 016001 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE-PSGKDMGINVRKKAENI 138 (397)
Q Consensus 87 ~LLEYLLkNGSErvVdd~r~hi~~I~~L~~FqYiD-~~GkDqGinVReKAk~I 138 (397)
+||.+||+.|++.|+.+++.|.. |-.|.+|.... ..|.|++.-||.-|+-|
T Consensus 87 ivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL 138 (271)
T 3zyl_A 87 ITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (271)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCC-eechhccCCCCCCCcccccHHHHHHHHHH
Confidence 99999999999999999988874 55888875432 24567788999999877
No 7
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.59 E-value=2.6e-15 Score=145.95 Aligned_cols=127 Identities=22% Similarity=0.331 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCchh-HHHHHHHHHHHhhcCCCchhhhhhHH
Q 016001 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSE-CQMVMNVLWTRLAETGKDWRYVYKAL 86 (397)
Q Consensus 8 ~qtvr~ikRkV~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~~-y~~IM~vLwKRL~d~gk~WR~IYKAL 86 (397)
.|++.+=-..+++.|++ +++|+.|+.||++++|+|..+.+.+|..+|++... +..||..|++||. .++|+++||||
T Consensus 10 ~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~--~~~w~vv~KaL 86 (310)
T 3zym_A 10 GQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKSL 86 (310)
T ss_dssp --CHHHHHHHHHHCCHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred cccHHHHHHHHHhcccc-cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC--CCchHHHHHHH
Confidence 35666656778888887 99999999999999999999999999999998764 7899999999999 47999999999
Q ss_pred HHHHHHHHcCCHhHHHHHHhhhhhhhcccceeeeC-CCCcchhhHHHHHHHHH
Q 016001 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE-PSGKDMGINVRKKAENI 138 (397)
Q Consensus 87 ~LLEYLLkNGSErvVdd~r~hi~~I~~L~~FqYiD-~~GkDqGinVReKAk~I 138 (397)
+||.+||+.|++.|+.+++.|.. |-.|.+|.... ..|.|+|..||.-|+-|
T Consensus 87 ivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL 138 (310)
T 3zym_A 87 ITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCC-eeecccccCCCCcCcccccHHHHHHHHHH
Confidence 99999999999999999988875 44888885331 14577889999999987
No 8
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.16 E-value=1e-10 Score=112.76 Aligned_cols=129 Identities=23% Similarity=0.277 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCch-hHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 016001 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS-ECQMVMNVLWTRLAETGKDWRYVYKALA 87 (397)
Q Consensus 9 qtvr~ikRkV~n~V~nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~~-~y~~IM~vLwKRL~d~gk~WR~IYKAL~ 87 (397)
|++|+.-..|++-. ..+++|+.|..||+.+.|+|..+.+.+|..+|++.. ....++..|++|+ ..++|.+++|||.
T Consensus 6 ~~~~~~~~a~k~~~-~~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~--~~~~w~va~K~Li 82 (299)
T 1hx8_A 6 QTINDRLLAARHSL-AGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERS--QNANWVVVYKSLI 82 (299)
T ss_dssp -----------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH--TCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-chhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhc--cCCcHHHHHHHHH
Confidence 44444333444322 246999999999999999999999999999998873 3678999999995 4569999999999
Q ss_pred HHHHHHHcCCHhHHHHHHhhhhhhhcccceeeeC------------CCCcchhhHHHHHHHHHHHh
Q 016001 88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE------------PSGKDMGINVRKKAENIVAL 141 (397)
Q Consensus 88 LLEYLLkNGSErvVdd~r~hi~~I~~L~~FqYiD------------~~GkDqGinVReKAk~IveL 141 (397)
||.+||+.|++.|++++..+.. +-.|.+|.=.. ..|.|+|..||.-|+-|.+-
T Consensus 83 vlH~llreG~~~~~~~l~~~~~-~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r 147 (299)
T 1hx8_A 83 TTHHLMAYGNERFMQYLASSNS-TFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEK 147 (299)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTC-CCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHhCCc-ccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999966432 34455662110 12447889999999866543
No 9
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=97.71 E-value=0.00034 Score=61.91 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=79.6
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHcC-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 016001 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (397)
Q Consensus 26 Se~E~KVrEATsNDpWGPs~slM~EIA~aTy-n~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~ 104 (397)
|+++..|..||+..--.|.-...-||++.-- +...-.+.|..|.|||. .+++.+.++-||+|||-|++|+-.+|-.++
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~-~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRIS-KNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-TCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8999999999997655666667777776642 23556789999999998 445777777799999999999999999888
Q ss_pred HhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhc
Q 016001 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (397)
Q Consensus 105 r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~ 143 (397)
-.--++-+.|... +.+.. ..-..||+|+.+++.-..
T Consensus 94 ask~Fl~e~L~kl--~~~~~-~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 94 VKKEFVKENLVKL--LNPRY-NLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp SSHHHHTTTTGGG--GSGGG-CCCHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHH--hcCCC-CCcHHHHHHHHHHHHHHH
Confidence 4333221111111 11111 123479999988887654
No 10
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=97.66 E-value=0.00048 Score=60.72 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=79.8
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHcC-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHH
Q 016001 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (397)
Q Consensus 26 Se~E~KVrEATsNDpWGPs~slM~EIA~aTy-n~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~ 104 (397)
|+++..|..||+...-.|.-....+|++.-- +...-.+.+..|.|||..+ ++...++-||+|||.|++|+-.+|-.++
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~-~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN-KNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 5899999999997666777777778877642 2356778999999999853 4677778899999999999998887776
Q ss_pred Hh--hhhh--hhcccceeeeCCCCcchhhHHHHHHHHHHHhhcC
Q 016001 105 IE--HTFQ--ISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (397)
Q Consensus 105 r~--hi~~--I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D 144 (397)
-+ -+.. ++.+ .+++ +.-..||+|+.+++.-..+
T Consensus 94 a~~~fl~e~Lvk~~------~~k~-~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 94 ASQDFVESVLVRTI------LPKN-NPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp TSHHHHHHHTHHHH------STTT-CCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh------ccCC-CCcHHHHHHHHHHHHHHHH
Confidence 43 2222 2222 1111 1235899999888876543
No 11
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=97.63 E-value=0.00028 Score=62.70 Aligned_cols=127 Identities=9% Similarity=0.100 Sum_probs=84.0
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcC-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 016001 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (397)
Q Consensus 25 ySe~E~KVrEATsNDpWGPs~slM~EIA~aTy-n~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd 103 (397)
-++++..|.+||+...-.|.-.+..+|++.-- ....-.+.+..|.|||..+ +-...+-||+|||.|++|+..+|-.+
T Consensus 13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46889999999997666677777777777642 2355678999999999864 44566779999999999998887766
Q ss_pred HHh--hhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhcC----hHHHHHHHHHHHHhhcc
Q 016001 104 IIE--HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN----KDKIQEVRNKASANREK 161 (397)
Q Consensus 104 ~r~--hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~D----~e~LreER~KAkk~R~K 161 (397)
+-. -+..+..|- .++ .-..||+|+.+++.-..+ ...|..-+.--+.+|.+
T Consensus 91 vas~~Fl~el~~l~-----~~~---~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 146 (163)
T 1x5b_A 91 VCSRDFATEVRAVI-----KNK---AHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEE 146 (163)
T ss_dssp HTSHHHHHHHHHHH-----HTT---CCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHH-----ccC---CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Confidence 533 222222111 111 113799999988875432 22344445544555543
No 12
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=97.63 E-value=0.0004 Score=62.26 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=81.1
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcC-CchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 016001 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (397)
Q Consensus 25 ySe~E~KVrEATsNDpWGPs~slM~EIA~aTy-n~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd 103 (397)
.++++..|..||+...-.|.-.+..+|++.-- +...-.+.+..|.|||... +-...+-||+|||.|++|+..+|-.+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~--n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSP--QEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 57899999999997666677777778887642 2345678999999999864 67788999999999999998888777
Q ss_pred HHhh--hhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhc
Q 016001 104 IIEH--TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (397)
Q Consensus 104 ~r~h--i~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~ 143 (397)
+-+. +..+..|-.=+|. |...-..||+|+.+++.-..
T Consensus 89 vas~~Fl~eL~kl~~~k~~---~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKYL---GDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HTSHHHHHHHHHHHCCCCC---CTTSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhccccC---CCCCCHHHHHHHHHHHHHHH
Confidence 6333 3322222111121 22344699999999887554
No 13
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=97.59 E-value=0.00058 Score=59.17 Aligned_cols=107 Identities=12% Similarity=0.096 Sum_probs=77.9
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 016001 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (397)
Q Consensus 25 ySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~-~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd 103 (397)
-+|.+..|..||+...-.|.-....+|++.--.. ..-.+.|..|.|||..+ +-...+-||+|||.|++|+-.+|-.+
T Consensus 3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3788999999999876677777888888875443 45677999999999864 55678889999999999998887765
Q ss_pred H--HhhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhh
Q 016001 104 I--IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (397)
Q Consensus 104 ~--r~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL 142 (397)
+ ++-+..+..|-. . .-..||+|+.+++.-.
T Consensus 81 vas~~Fl~el~~l~~-~--------~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 81 VCSRDFASEVSNVLN-K--------GHPKVCEKLKALMVEW 112 (140)
T ss_dssp HSSHHHHHHHHHHHH-H--------SCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhc-c--------CCHHHHHHHHHHHHHH
Confidence 5 333332222211 0 1248999998888644
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=97.54 E-value=0.00044 Score=64.12 Aligned_cols=128 Identities=15% Similarity=0.213 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 016001 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (397)
Q Consensus 24 nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~-~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVd 102 (397)
.-+++|..|.+||+...-.|.-....+|++.--.. ..-.+.|..|.|||.. ++-..++-||+|||.|++|+..+|-.
T Consensus 5 ~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 5 GSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp --CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45899999999999877777778888888775432 3457899999999984 57778999999999999999888777
Q ss_pred HHH--hhhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhh----cChHHHHHHHHHHHHhhcc
Q 016001 103 DII--EHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL----NNKDKIQEVRNKASANREK 161 (397)
Q Consensus 103 d~r--~hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL----~D~e~LreER~KAkk~R~K 161 (397)
++- +-+..|..|- . ......||+|+.+|+.-. .++..|...+.--+.++.+
T Consensus 83 eias~~fl~~l~~l~-----~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 139 (226)
T 3zyq_A 83 EVANKQTMEELKDLL-----K---RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVE 139 (226)
T ss_dssp HHSSHHHHHHHHHHH-----H---HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHh-----c---cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Confidence 762 2232232221 1 112358999999988754 2344455555555555543
No 15
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=97.41 E-value=0.0014 Score=57.71 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHH
Q 016001 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (397)
Q Consensus 24 nySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn~-~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVd 102 (397)
.-++++..|..||+...-.|.-....+|++.--.. ..-.+.|..|.|||.. ++-...+-||+|||.|++|+-.+|-.
T Consensus 8 ~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 8 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp SCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34889999999999877778888899999886433 4566789999999984 57788899999999999999999877
Q ss_pred HHHhh--hhhhh-cccceeeeCCCCcchhhHHHHHHHHHHHhh
Q 016001 103 DIIEH--TFQIS-SLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (397)
Q Consensus 103 d~r~h--i~~I~-~L~~FqYiD~~GkDqGinVReKAk~IveLL 142 (397)
++-.. +..|. .+.. +| .|...-..||+|+.+++.-.
T Consensus 86 eias~~Fl~eL~kl~~~-k~---~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 86 EVGKFRFLNELIKVVSP-KY---LGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHTSHHHHHHHHHHHCT-TT---TGGGSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHcc-cc---cCCCCCHHHHHHHHHHHHHH
Confidence 76332 22222 1111 12 12223468999999888654
No 16
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=97.40 E-value=0.0021 Score=56.30 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=78.2
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHh
Q 016001 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (397)
Q Consensus 28 ~E~KVrEATsNDpWGPs~slM~EIA~aTyn-~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~ 106 (397)
++..|..||+.-.-.|.-....+|++.--. ...-.+.|..|.|||.. ++-...+-||+|||.|++|+..+|-.++-.
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 578899999976666666777788876422 35577899999999974 477888999999999999999998777733
Q ss_pred --hhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhc
Q 016001 107 --HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (397)
Q Consensus 107 --hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~ 143 (397)
-+..+..|-.=+| .|...-..||+|+.+++.-..
T Consensus 80 ~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 80 FRFLNELIKVLSPKY---LGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTTCCST---TSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence 3333322211012 122234699999988886543
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.31 E-value=0.0016 Score=59.60 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=77.9
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHH
Q 016001 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (397)
Q Consensus 25 ySe~E~KVrEATsNDpWGPs~slM~EIA~aTyn-~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd 103 (397)
-|+++..|..||+...-.|.-.+..||++.--. ...-.+.+..|.|||.. ++-...+-||+|||.|++|+-.+|-.+
T Consensus 3 ~~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~e 80 (220)
T 1dvp_A 3 RSSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEE 80 (220)
T ss_dssp CSHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred cchHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 367899999999976667777788888877533 34567899999999986 477889999999999999988877666
Q ss_pred HHh--hhhhhhcccceeeeCCCCcchhhHHHHHHHHHHHhhc
Q 016001 104 IIE--HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (397)
Q Consensus 104 ~r~--hi~~I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~ 143 (397)
+-+ -+..+..| +.. ..-..||+|+.+|++-..
T Consensus 81 va~~~fl~~l~~l-----~~~---~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 81 VFTKENCEMFSSF-----LES---TPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HSSHHHHHHHHHH-----HHH---CSCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH-----hcC---CCcHHHHHHHHHHHHHHH
Confidence 522 22222221 110 123589999888876554
No 18
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=71.50 E-value=24 Score=30.36 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceee
Q 016001 40 PWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEY 119 (397)
Q Consensus 40 pWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~hi~~I~~L~~FqY 119 (397)
+.+|.-..|..+|.. +...+..|+++|.++|... .-.+-+=+|-|++-+++|....++..+-.++..+-. .-|.-
T Consensus 22 nSk~~I~~LT~~a~~--~~~~a~~Iv~~i~~~i~k~--~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~-~~~~~ 96 (144)
T 1sz9_A 22 NSRPIITTLTKLAEE--NISCAQYFVDAIESRIEKC--MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYK-RTYLL 96 (144)
T ss_dssp CCHHHHHHHHHHHHH--TGGGHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHH-HHHHT
T ss_pred ccHhHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC--CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHHHh
Confidence 344444455555554 6778999999999999754 345566689999999999777787777776543311 11221
Q ss_pred eCCCCcchhhHHHHHHHHHHHhhcCh----------HHHHHHHHHHHH
Q 016001 120 VEPSGKDMGINVRKKAENIVALLNNK----------DKIQEVRNKASA 157 (397)
Q Consensus 120 iD~~GkDqGinVReKAk~IveLL~D~----------e~LreER~KAkk 157 (397)
+| ..+|.|..+|+..=... +.|+.-|..-.+
T Consensus 97 ~d-------~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 97 VD-------NTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp SC-------HHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHh
Confidence 22 48999999999988755 777777665443
No 19
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=69.59 E-value=6.3 Score=35.24 Aligned_cols=84 Identities=6% Similarity=0.109 Sum_probs=55.3
Q ss_pred CCchhHHHHHHHHHHHhhcCCCchhhhhhHHHH----HHHHHHcCCHh-HHHHHHhhhhhhhcccceeeeCCCCcchhhH
Q 016001 56 KKFSECQMVMNVLWTRLAETGKDWRYVYKALAV----IEYLISHGSER-AVDDIIEHTFQISSLSSFEYVEPSGKDMGIN 130 (397)
Q Consensus 56 yn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~L----LEYLLkNGSEr-vVdd~r~hi~~I~~L~~FqYiD~~GkDqGin 130 (397)
-.|-+|.+|.+-+|+.......+ |.+|++|+. --|=+.+|..+ .+.-++.-+..|+.+.. ...|++
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~--------~~~GID 116 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN--------DYYGVD 116 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT--------TGGGBC
T ss_pred CCchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC--------ccCCcC
Confidence 34677788999999987655323 778887777 23446777765 33334444445544321 347888
Q ss_pred HHHHHHHHHHhhcChHHH
Q 016001 131 VRKKAENIVALLNNKDKI 148 (397)
Q Consensus 131 VReKAk~IveLL~D~e~L 148 (397)
|..-...|-++|.|++.+
T Consensus 117 v~~L~~~~~~~l~dp~~~ 134 (161)
T 2ijq_A 117 LLDVRTTVTNALSDPSAL 134 (161)
T ss_dssp HHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHhhCCccC
Confidence 888888888888888754
No 20
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=50.65 E-value=86 Score=25.72 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHc-CCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC----HhHHHHHHhhhhhhhccccee
Q 016001 44 HGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS----ERAVDDIIEHTFQISSLSSFE 118 (397)
Q Consensus 44 s~slM~EIA~aT-yn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGS----ErvVdd~r~hi~~I~~L~~Fq 118 (397)
+-.-.+.++.+. ++...+..|++++.++|.....+ +-.-.|-|++-+++|.. ..++..+...+..+ |.
T Consensus 20 s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~--~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~-----~~ 92 (132)
T 4flb_A 20 TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYP--HRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEA-----AA 92 (132)
T ss_dssp SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHH-----HH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChh--hHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH-----HH
Confidence 455566666665 56678899999999999876543 44577899999998863 34555555544322 22
Q ss_pred ee-CCCCcchhhHHHHHHHHHHHhhc-----ChHHHHHHHHH
Q 016001 119 YV-EPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNK 154 (397)
Q Consensus 119 Yi-D~~GkDqGinVReKAk~IveLL~-----D~e~LreER~K 154 (397)
.+ ++ .+|+|..+|+++-+ +++.|++-|+.
T Consensus 93 ~~~~~-------~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~ 127 (132)
T 4flb_A 93 LVKDP-------SVSKSVERIFKIWEDRNVYPEEMIVALREA 127 (132)
T ss_dssp TTCST-------TTHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhCCH-------HHHHHHHHHHHHhccCCCcCHHHHHHHHHH
Confidence 22 32 35778888888765 46777766653
No 21
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=45.81 E-value=11 Score=36.89 Aligned_cols=24 Identities=4% Similarity=0.257 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhhcC-hHHHHHHH
Q 016001 129 INVRKKAENIVALLNN-KDKIQEVR 152 (397)
Q Consensus 129 inVReKAk~IveLL~D-~e~LreER 152 (397)
..|++.+++|++++.. ++.|+.-+
T Consensus 232 ~~l~~i~~~il~~y~~~~~~L~~i~ 256 (358)
T 2pk2_A 232 ELLDELTHEFLQILEKTPNRLKRIW 256 (358)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccchh
Confidence 4799999999999874 44455544
No 22
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=42.53 E-value=1.6e+02 Score=25.08 Aligned_cols=118 Identities=13% Similarity=0.181 Sum_probs=78.6
Q ss_pred CHHHHHHHHhhcCCCCCCCHHHHHHHHHHc-CCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCH------
Q 016001 26 PEIEQKVLDATDNEPWGPHGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSE------ 98 (397)
Q Consensus 26 Se~E~KVrEATsNDpWGPs~slM~EIA~aT-yn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSE------ 98 (397)
.+.|.++.+-+...|- -+...++.|..++ .+...+..|+..+.++|..-.. ++-+=.|-|++=+++|.-.
T Consensus 5 ~~f~~~L~~L~~~k~~-~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~--~~KL~~LYL~DsIvrn~~~k~~~~~ 81 (145)
T 3d9j_A 5 KTFNSELYSLNDYKPP-ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKP--EYKVPGLYVIDSIVRQSRHQFGQEK 81 (145)
T ss_dssp HHHHHHHHGGGGSCSS-CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCG--GGHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--cceeehhhhhHHHHHHhhhhcCCcc
Confidence 3455666665554432 5667777766654 5667889999999999987533 4567899999999999766
Q ss_pred -hHHHHHHhhhhh-hhcccceeeeCCCCcchhhHHHHHHHHHHHhhc-----ChHHHHHHHHHHH
Q 016001 99 -RAVDDIIEHTFQ-ISSLSSFEYVEPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNKAS 156 (397)
Q Consensus 99 -rvVdd~r~hi~~-I~~L~~FqYiD~~GkDqGinVReKAk~IveLL~-----D~e~LreER~KAk 156 (397)
.++..+...+.. +. .-| . .+..+|.|..+|+++=. .++.|+.-|....
T Consensus 82 ~~f~~~F~~~L~~~f~--~~~---~-----~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 82 DVFAPRFSNNIISTFQ--NLY---R-----CPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp CSHHHHHHHHHHHHHH--HHT---S-----SCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH--HHH---h-----CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 466666544432 22 112 1 12478899999998764 6677777776554
No 23
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=38.15 E-value=2e+02 Score=24.97 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=67.9
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCCHhHHHHHHhhhhhhh
Q 016001 33 LDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQIS 112 (397)
Q Consensus 33 rEATsNDpWGPs~slM~EIA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGSErvVdd~r~hi~~I~ 112 (397)
.+=.-+=+|.+......-++.. . ..++..|++-|......|.. -||+||+.+=+.+.+..++.-+..|-
T Consensus 37 L~WLQD~NWPvA~~i~~~L~~~--~----~~l~p~I~~vl~s~D~~W~y-----wil~~lv~~~~~~~~~~l~~eL~rl~ 105 (134)
T 3ut4_A 37 LKWLQDYNWPIAKDILPVVVLH--Q----SIAMPHILTILQGNDIMWKY-----WVIKLMIPYLIYPNKQLVKSELERLS 105 (134)
T ss_dssp HGGGSCTTSTTHHHHHHHHHHT--H----HHHHHHHHHHHHSSCHHHHH-----HHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHc--c----HhhHHHHHHHHHcCChHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3555578998887777666642 1 36777777777777777753 58999999999999888888777665
Q ss_pred cccceeeeCCCCcchhhHHHHHHHHHHHh
Q 016001 113 SLSSFEYVEPSGKDMGINVRKKAENIVAL 141 (397)
Q Consensus 113 ~L~~FqYiD~~GkDqGinVReKAk~IveL 141 (397)
. .+.+.+.-..|.+-|++|++-
T Consensus 106 ~-------~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 106 S-------LEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp T-------CCCSSGGGHHHHHHHHHHHHH
T ss_pred h-------CCCcchHHHHHHHHHHHHHHH
Confidence 3 445567777888999998864
No 24
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=32.36 E-value=96 Score=31.33 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=65.1
Q ss_pred HHHHHHhhcCCCCCCCHHH------HHHHHHHcCCchhHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHcCCHhH
Q 016001 29 EQKVLDATDNEPWGPHGTA------LAEIAQATKKFSECQMVMNVLWTRLAE--TGKDWRYVYKALAVIEYLISHGSERA 100 (397)
Q Consensus 29 E~KVrEATsNDpWGPs~sl------M~EIA~aTyn~~~y~~IM~vLwKRL~d--~gk~WR~IYKAL~LLEYLLkNGSErv 100 (397)
+.-|+--..-=|+..+.+. +.+|...+ +..+|..||..|.+||.. ...+....-.||.+. ..+.+
T Consensus 250 ~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~-~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w------nNe~i 322 (403)
T 3fga_B 250 EPVVMALLKYWPKTHSPKEVMFLNELEEILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW------NNEYI 322 (403)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG------GCHHH
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh------ccHHH
Confidence 3344444444444444443 23455444 678999999999999975 355888888888776 33555
Q ss_pred HHHHHhhhhhhhcccceeeeCCC-CcchhhHHHHHHHHHHHhhcC
Q 016001 101 VDDIIEHTFQISSLSSFEYVEPS-GKDMGINVRKKAENIVALLNN 144 (397)
Q Consensus 101 Vdd~r~hi~~I~~L~~FqYiD~~-GkDqGinVReKAk~IveLL~D 144 (397)
+.-+.+|...|-.+- |.-...+ -.-|...||..|-.++.+|.|
T Consensus 323 ~~li~~n~~~IlPii-~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 323 MSLISDNAAKILPIM-FPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHTTHHHHHHHH-HHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHH-HHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 555555554333211 1000001 123788999999999999944
No 25
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=24.13 E-value=79 Score=26.23 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHc-CCHhHHHHHHhhhh---hhhcccceeeeCCCCcchhhHHHHHHH
Q 016001 61 CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISH-GSERAVDDIIEHTF---QISSLSSFEYVEPSGKDMGINVRKKAE 136 (397)
Q Consensus 61 y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkN-GSErvVdd~r~hi~---~I~~L~~FqYiD~~GkDqGinVReKAk 136 (397)
+.++-..|...|.-. --.|.|||.+||-|-.= .... -++.|.. .|+.|++|. | ...||++|.
T Consensus 8 l~~L~~~ik~~L~~~---~~Dv~kcl~~L~~l~~l~~T~~---mL~rnpe~V~t~kklRry~-----g---~q~Ir~kA~ 73 (98)
T 2b4j_C 8 LQRIHAEIKNSLKID---NLDVNRCIEALDELASLQVTMQ---QAQKHTEMITTLKKIRRFK-----V---SQVIMEKST 73 (98)
T ss_dssp HHHHHHHHHHHTCTT---SCCHHHHHHHHHHHHTCCCCHH---HHHTTHHHHHHHHHHTTCT-----T---CHHHHHHHH
T ss_pred HHHHHHHHHHHHccC---CCCHHHHHHHHHHHhcccccHH---HHhhChHHHHHHHHHHHHh-----c---hHHHHHHHH
Confidence 334444444444432 12477888888877543 2221 2344433 555666662 2 168888888
Q ss_pred HHHH
Q 016001 137 NIVA 140 (397)
Q Consensus 137 ~Ive 140 (397)
.|.+
T Consensus 74 ~iY~ 77 (98)
T 2b4j_C 74 MLYN 77 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 26
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=22.94 E-value=43 Score=27.75 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHcCCchhHHHHHHHHHHHhhc---------CCCchhhhhhHHH
Q 016001 43 PHGTALAEIAQATKKFSECQMVMNVLWTRLAE---------TGKDWRYVYKALA 87 (397)
Q Consensus 43 Ps~slM~EIA~aTyn~~~y~~IM~vLwKRL~d---------~gk~WR~IYKAL~ 87 (397)
++..+|..|=..+ ..+.+-.+.||+++.. .+..||.+|-.|.
T Consensus 25 ~tp~QL~~IE~~n---P~L~~dTdeLWk~~c~rdF~~~~p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 25 CTPDQLYRIEEYN---HVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQ 75 (97)
T ss_dssp CCHHHHHHHHTC---------CCHHHHHHHC----CCSCCCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHhC---cccchhhHHHHHHHHHhHCcccCCCCCCCHHHHHHHHH
Confidence 3666666665443 4666778899999963 2579999998653
No 27
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=21.21 E-value=1.1e+02 Score=29.17 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=39.9
Q ss_pred CCHHHHHHHHhhcCCCCCCCHHHHHH-HHHHcCCchhHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHcCC
Q 016001 25 VPEIEQKVLDATDNEPWGPHGTALAE-IAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS 97 (397)
Q Consensus 25 ySe~E~KVrEATsNDpWGPs~slM~E-IA~aTyn~~~y~~IM~vLwKRL~d~gk~WR~IYKAL~LLEYLLkNGS 97 (397)
+.+-|..||||.- +|.+++| |++++|+. +|.+.+.+-|.+. -|-..-.||.||--+.+-=+
T Consensus 3 me~~e~d~reala------tge~~~eii~~a~~d~----~~l~~lI~~LDDD--lwtV~kNAl~vi~~i~~~~~ 64 (253)
T 2db0_A 3 MEEEEFDIREALA------NGEHLEKILIMAKYDE----SVLKKLIELLDDD--LWTVVKNAISIIMVIAKTRE 64 (253)
T ss_dssp ------CHHHHHH------TTCSHHHHHHHHHHCH----HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCG
T ss_pred chHhhhhHHHHHh------hhhhHHHHHHHHHhhH----HHHHHHHHHhccH--HHHHHHhHHHHHHHHHHHhH
Confidence 4567889999986 4556776 67889985 4455555555554 79999999999887766544
Done!