Query 016002
Match_columns 397
No_of_seqs 122 out of 212
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 02:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1308 Hsp70-interacting prot 100.0 4.4E-40 9.6E-45 323.0 2.6 315 61-394 50-377 (377)
2 KOG0548 Molecular co-chaperone 98.7 4E-08 8.7E-13 102.2 8.4 75 314-389 453-533 (539)
3 smart00727 STI1 Heat shock cha 98.5 1E-07 2.2E-12 66.9 4.2 40 344-383 1-41 (41)
4 smart00727 STI1 Heat shock cha 97.1 0.00044 9.6E-09 48.5 2.8 38 251-292 3-41 (41)
5 KOG0010 Ubiquitin-like protein 95.2 0.047 1E-06 57.6 6.9 35 248-290 155-190 (493)
6 KOG0010 Ubiquitin-like protein 94.7 0.057 1.2E-06 57.0 5.9 93 223-368 308-401 (493)
7 KOG3037 Cell membrane glycopro 91.8 0.37 8E-06 48.9 6.1 55 245-299 227-281 (330)
8 KOG0548 Molecular co-chaperone 91.3 0.48 1E-05 50.7 6.6 74 315-388 98-180 (539)
9 KOG0011 Nucleotide excision re 81.6 11 0.00023 38.9 9.6 41 250-294 214-259 (340)
10 PF09280 XPC-binding: XPC-bind 61.4 12 0.00025 29.4 3.5 10 253-262 2-11 (59)
11 PF06757 Ins_allergen_rp: Inse 55.9 1E+02 0.0022 27.9 9.1 126 255-388 28-167 (179)
12 PRK10878 hypothetical protein; 53.3 26 0.00057 28.6 4.4 42 325-366 14-63 (72)
13 PF09280 XPC-binding: XPC-bind 53.0 22 0.00047 27.9 3.8 10 365-374 44-53 (59)
14 TIGR00601 rad23 UV excision re 49.1 40 0.00087 34.8 6.0 14 251-264 247-260 (378)
15 PF07319 DnaI_N: Primosomal pr 43.6 14 0.00031 30.6 1.5 17 336-352 23-39 (94)
16 cd06199 SiR Cytochrome p450- l 41.5 38 0.00082 33.7 4.4 25 99-123 213-237 (360)
17 KOG2366 Alpha-D-galactosidase 35.3 64 0.0014 34.2 5.0 51 277-327 228-278 (414)
18 smart00845 GatB_Yqey GatB doma 34.6 2.8E+02 0.0061 24.4 8.2 43 350-392 86-132 (147)
19 PLN03094 Substrate binding sub 34.3 1.3E+02 0.0028 31.2 7.0 104 281-391 261-367 (370)
20 PF04286 DUF445: Protein of un 34.2 3.8E+02 0.0081 25.5 9.6 41 252-299 131-171 (367)
21 TIGR00601 rad23 UV excision re 33.8 2.4E+02 0.0051 29.4 8.7 41 338-378 248-294 (378)
22 PF04078 Rcd1: Cell differenti 33.7 17 0.00038 36.1 0.7 48 253-300 214-261 (262)
23 PF07849 DUF1641: Protein of u 31.2 39 0.00085 24.7 2.0 11 340-350 18-28 (42)
24 cd06203 methionine_synthase_re 31.1 55 0.0012 33.1 3.7 24 99-122 241-264 (398)
25 PF08173 YbgT_YccB: Membrane b 30.8 38 0.00082 23.7 1.8 16 103-119 5-20 (28)
26 cd01067 globin_like superfamil 28.5 1.5E+02 0.0033 24.3 5.3 54 336-389 5-70 (117)
27 PF04286 DUF445: Protein of un 28.3 2.4E+02 0.0052 26.8 7.3 17 246-262 54-70 (367)
28 cd07922 CarBa CarBa is the A s 28.3 67 0.0014 26.9 3.1 21 357-377 7-27 (81)
29 COG2427 Uncharacterized conser 27.9 93 0.002 28.0 4.2 39 277-315 58-97 (148)
30 KOG1308 Hsp70-interacting prot 26.8 12 0.00026 39.0 -1.8 44 340-384 281-335 (377)
31 cd00322 FNR_like Ferredoxin re 26.2 41 0.00089 29.4 1.7 23 99-121 97-119 (223)
32 cd06207 CyPoR_like NADPH cytoc 25.7 1E+02 0.0022 30.8 4.5 24 99-122 230-253 (382)
33 KOG3341 RNA polymerase II tran 24.7 60 0.0013 32.3 2.6 23 281-303 55-77 (249)
34 PRK08051 fre FMN reductase; Va 22.7 94 0.002 28.4 3.4 21 99-119 102-122 (232)
35 PRK05686 fliG flagellar motor 21.9 6.7E+02 0.015 25.1 9.3 27 247-273 120-148 (339)
36 cd06208 CYPOR_like_FNR These f 21.9 59 0.0013 31.0 1.9 24 99-122 135-158 (286)
37 PRK10878 hypothetical protein; 21.3 1.7E+02 0.0036 24.0 4.1 32 272-303 32-68 (72)
38 cd06216 FNR_iron_sulfur_bindin 20.9 57 0.0012 29.7 1.6 21 99-119 122-142 (243)
39 PF08125 Mannitol_dh_C: Mannit 20.8 1.7E+02 0.0037 27.8 4.7 50 341-391 92-143 (245)
40 KOG0011 Nucleotide excision re 20.6 1.2E+02 0.0027 31.5 4.0 41 338-378 216-262 (340)
No 1
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-40 Score=323.05 Aligned_cols=315 Identities=27% Similarity=0.285 Sum_probs=243.2
Q ss_pred CCCcccccceeeecCCCccccccccCCCCCCCCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-------
Q 016002 61 NGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKA------- 133 (397)
Q Consensus 61 ~~~~~~~~fas~ss~~~~~~~s~~~~~~~~~pp~~s~igspl~wigvgvglsa~fs~~a~~~k~yamqqa~ks------- 133 (397)
..+-+++.|++|+++..- ++-..-.++++|-...++++|||++++|+++++||.+-...++|++++=.|.
T Consensus 50 ~~~e~~k~e~~~~~~~ee---~~~~~e~s~~~~~~~~d~egviepd~d~pq~MGds~~e~Tee~~eqa~e~k~~A~eAln 126 (377)
T KOG1308|consen 50 KSEENTKAEASISKSVEE---SLKAPEVSSPESDLEIDGEGVIEPDTDAPQEMGDSNAEITEEMMDQANDKKVQASEALN 126 (377)
T ss_pred cccccccccCCccccccc---ccccCCCCCCCcchhccCCCccccCCCcchhhchhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 366789999999887443 7777777775555568999999999999999999999999999999987776
Q ss_pred cCCCCCCCCCCCCCccccCCCccccccccccccCcccccCcccccc---CCcccceeeCChhhhhhhccccccccccccC
Q 016002 134 SGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKE---EPKKYAFVDVSPEETLQKSSFDNFEDVKETS 210 (397)
Q Consensus 134 ~~p~~~~~~~~~~~~tvd~~at~v~a~~~~~v~~~~~~~~~~e~~~---e~kk~af~dvs~ee~~~~~~~~~~~~~~~~~ 210 (397)
.|=..-.--.-..+++...+...-.+--++. ..+.++ +-+.++|-+..++++-+..+|........+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv---------~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASV---------FLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccce---------eeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 2211111001112222222222222222222 233343 4478999999999999999998777776666
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCCC--ccccCccccHHHHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChH
Q 016002 211 SSKDAQPP-KDSQNGAAFNYNAGSPFGGQS--AKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPE 287 (397)
Q Consensus 211 ~~k~~~~~-~~~~~g~~~~~~~~~~~~~~~--~~~~g~~~~~~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPq 287 (397)
..+.+... .+.+++..-..++-...--+. ..+.+.-......++++.++.+++++|+|+|++|+|+++++||++|++
T Consensus 198 ~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~r~~~e~~~~e~~k~~~~~~~ 277 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYAREPEEMANPEEFKRMLKNPQ 277 (377)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccccchhhhcChhhhhhhhccCC
Confidence 66544433 344444333322222211111 233456678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchhhhhhhccCCCChHHHHHHHHhcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhCh
Q 016002 288 YRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNP 367 (397)
Q Consensus 288 yrqQL~~Ml~~mgg~g~~~~~m~d~L~~~D~NnpEv~eqf~q~G~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNP 367 (397)
||+++.+|.+.|+|+..|+-+|.+.|++.+.|.+ +.+++.+.| +.+||.||||+++||||+|+++|+||++||
T Consensus 278 ~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~-~~~~p~~~g------i~ki~~dpev~aAfqdp~v~aal~d~~~np 350 (377)
T KOG1308|consen 278 YRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSP-VKQQPNQIG------ISKILSDPEVAAAFQDPEVQAALMDVSQNP 350 (377)
T ss_pred CCcccCCCcccCCCCCCCccccccccccCCCCCc-cccCCCccc------HhhhcCchHHHHhhcChHHHhhhhhcccCh
Confidence 9999999999999999899999999999999999 877777777 899999999999999999999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhCCCCC
Q 016002 368 MNIIKYQNDKEVMSVITKIAELFPGVT 394 (397)
Q Consensus 368 aAI~KYqsDPKVm~~IqKL~akFgG~~ 394 (397)
+|++||++||+||++|.||+.+|+|++
T Consensus 351 ~n~~kyq~n~kv~~~i~kl~~kf~g~~ 377 (377)
T KOG1308|consen 351 ANMMKYQNNPKVMDVISKLSQKFPGMT 377 (377)
T ss_pred HHHHHhccChHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999874
No 2
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4e-08 Score=102.21 Aligned_cols=75 Identities=25% Similarity=0.377 Sum_probs=68.4
Q ss_pred ccCCCChHHHHHHH-----H-hcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHH
Q 016002 314 KNFDLNSAEVKQQF-----E-QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIA 387 (397)
Q Consensus 314 ~~~D~NnpEv~eqf-----~-q~G~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~ 387 (397)
..+|+++.|+.+++ + +...+++++.++.|.||||++||+||.++.+|.++++|| +.++|+.||.|+.+|+||+
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~~p-a~~~~~~n~~v~~ki~~l~ 531 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQDPAMRQILEQMQENP-ALQEHLKNPMVMQKIEKLI 531 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHhCH-HHHHHHhccHHHHHHHHHH
Confidence 35679999998888 2 457899999999999999999999999999999999999 8899999999999999998
Q ss_pred Hh
Q 016002 388 EL 389 (397)
Q Consensus 388 ak 389 (397)
+.
T Consensus 532 ~~ 533 (539)
T KOG0548|consen 532 SA 533 (539)
T ss_pred Hh
Confidence 63
No 3
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=98.54 E-value=1e-07 Score=66.93 Aligned_cols=40 Identities=30% Similarity=0.592 Sum_probs=38.1
Q ss_pred CHHHHhhcCCHHHHHHHHHHhhChHHHHHhhc-CHHHHHHH
Q 016002 344 NPEIALGFQSPRVQAAIMECSQNPMNIIKYQN-DKEVMSVI 383 (397)
Q Consensus 344 DPEI~aamQDPeV~aALqDIssNPaAI~KYqs-DPKVm~~I 383 (397)
|||++++++||.|+.+++++++||..+.+|+. ||+++++|
T Consensus 1 dP~~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~i 41 (41)
T smart00727 1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQLI 41 (41)
T ss_pred CHHHHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhhC
Confidence 89999999999999999999999999999999 99998764
No 4
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=97.09 E-value=0.00044 Score=48.50 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=31.6
Q ss_pred HHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhh-ChHHHHHH
Q 016002 251 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQ-NPEYRKQL 292 (397)
Q Consensus 251 ~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~Mlq-NPqyrqQL 292 (397)
.+..+|+||.+++++-- .++||+.+..|++ ||++++++
T Consensus 3 ~~~~~l~~P~~~~~l~~----~~~nP~~~~~~~~~nP~~~~~i 41 (41)
T smart00727 3 EMALRLQNPQVQSLLQD----MQQNPDMLAQMLQENPQLLQLI 41 (41)
T ss_pred HHHHHHcCHHHHHHHHH----HHHCHHHHHHHHHhCHHhHhhC
Confidence 45678889999987764 8889999999999 99997653
No 5
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.21 E-value=0.047 Score=57.58 Aligned_cols=35 Identities=31% Similarity=0.670 Sum_probs=21.6
Q ss_pred cHHHHHHhhcCHHHHHhhcCCCccccCCHHHHH-HHhhChHHHH
Q 016002 248 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFK-LMLQNPEYRK 290 (397)
Q Consensus 248 ~~~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk-~MlqNPqyrq 290 (397)
+-+.+..||+||-+|. .|+|||.+. .++.||+|.+
T Consensus 155 npe~~~~~m~nP~vq~--------ll~Npd~mrq~I~anPqmq~ 190 (493)
T KOG0010|consen 155 NPEALRQMMENPIVQS--------LLNNPDLMRQLIMANPQMQD 190 (493)
T ss_pred CHHHHHHhhhChHHHH--------HhcChHHHHHHHhcCHHHHH
Confidence 3456677777777774 345666665 4566666633
No 6
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.69 E-value=0.057 Score=56.98 Aligned_cols=93 Identities=24% Similarity=0.325 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCCCCCccccCccccHHHHHHhhcCHH-HHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccC
Q 016002 223 NGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQ-VQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCE 301 (397)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~Mm~nPq-mQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~mgg 301 (397)
++.++..|.+++.+.......++-..-..++.+..||+ +|+|+.||.+ .+|.-|.+||.+..+
T Consensus 308 ~~~~~t~G~~s~~~~~n~s~~~~~~~~a~lq~i~~n~~~~~~l~s~~~~------~m~~~~s~~P~~a~~---------- 371 (493)
T KOG0010|consen 308 NPTPGTSGGTSSNGNSNPSQLGSPGMQAGLQMITENPSLLQQLLSPYIR------SMFQSASQNPLQAAQ---------- 371 (493)
T ss_pred CCCcCccCccccCCCCCccccCCcchhhhhhccccChhhhhhccchhhH------HHHhhhccCchhhhc----------
Confidence 34444444333332222223344455567888888883 4455555544 556667788877444
Q ss_pred CCCCchhhhhhhccCCCChHHHHHHHHhcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChH
Q 016002 302 SGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 368 (397)
Q Consensus 302 ~g~~~~~m~d~L~~~D~NnpEv~eqf~q~G~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNPa 368 (397)
+.. |.||+++.+|.+|+++++|+.|++.-.
T Consensus 372 ------------------------------------~~~-mq~p~~~~~~~np~a~~ai~qiqq~~~ 401 (493)
T KOG0010|consen 372 ------------------------------------LRQ-MQNPDVLRAMSNPRAMQAIRQIQQGLQ 401 (493)
T ss_pred ------------------------------------ccc-ccCchHhhhhcChHHHHHHHHHHHHHH
Confidence 013 779999999999999999999987544
No 7
>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]
Probab=91.76 E-value=0.37 Score=48.89 Aligned_cols=55 Identities=20% Similarity=0.495 Sum_probs=49.2
Q ss_pred ccccHHHHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhc
Q 016002 245 RFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGM 299 (397)
Q Consensus 245 ~~~~~~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~m 299 (397)
..+.-+.+..++.||-+|+=++||||+---+.+-+.-++++|||+|+|.-+....
T Consensus 227 ~vL~~e~v~~vl~~~~v~erL~phlP~d~~~~~~i~e~l~spqF~qal~sfs~aL 281 (330)
T KOG3037|consen 227 TVLKPEAVAPVLANPGVQERLMPHLPSDHDRAEGILELLTSPQFRQALDSFSQAL 281 (330)
T ss_pred hhcChHHHHHHhhCcchhhhhcccCCCCCcchHHHHHhhcCHHHHHHHHHHHHHH
Confidence 3466899999999999999999999998888888889999999999998877665
No 8
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=0.48 Score=50.73 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=60.3
Q ss_pred cCCCChHHHHHHHHhcC---------CChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHH
Q 016002 315 NFDLNSAEVKQQFEQIG---------LTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITK 385 (397)
Q Consensus 315 ~~D~NnpEv~eqf~q~G---------~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqK 385 (397)
.+|++|..+..++.+.- .+.-.+++++-+||.....+.||.+..+|+.++.||.++.-|++||-+|..+--
T Consensus 98 ~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~ 177 (539)
T KOG0548|consen 98 EKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQ 177 (539)
T ss_pred hcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHH
Confidence 45677887777763211 122357888999999999999999999999999999999999999999988877
Q ss_pred HHH
Q 016002 386 IAE 388 (397)
Q Consensus 386 L~a 388 (397)
|..
T Consensus 178 l~~ 180 (539)
T KOG0548|consen 178 LKG 180 (539)
T ss_pred Hhc
Confidence 754
No 9
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=81.63 E-value=11 Score=38.90 Aligned_cols=41 Identities=37% Similarity=0.499 Sum_probs=31.3
Q ss_pred HHHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhh-----ChHHHHHHHH
Q 016002 250 DTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQ-----NPEYRKQLQE 294 (397)
Q Consensus 250 ~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~Mlq-----NPqyrqQL~~ 294 (397)
+.|+-++++||||+|..= -=+||+.++-||| ||+..|+|++
T Consensus 214 ~~l~fLr~~~qf~~lR~~----iqqNP~ll~~~Lqqlg~~nP~L~q~Iq~ 259 (340)
T KOG0011|consen 214 DPLEFLRNQPQFQQLRQM----IQQNPELLHPLLQQLGKQNPQLLQLIQE 259 (340)
T ss_pred CchhhhhccHHHHHHHHH----HhhCHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 668888999999966411 0159999999985 8999998864
No 10
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=61.36 E-value=12 Score=29.45 Aligned_cols=10 Identities=50% Similarity=0.627 Sum_probs=6.0
Q ss_pred HHhhcCHHHH
Q 016002 253 EKLMEDPQVQ 262 (397)
Q Consensus 253 ~~Mm~nPqmQ 262 (397)
+-++++|+|+
T Consensus 2 ~~Lr~~Pqf~ 11 (59)
T PF09280_consen 2 EFLRNNPQFQ 11 (59)
T ss_dssp GGGTTSHHHH
T ss_pred hHHHcChHHH
Confidence 3456666666
No 11
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=55.92 E-value=1e+02 Score=27.94 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=69.0
Q ss_pred hhcCHHHHHhhcCCCccccCCHHHHH----HHhhChHHHHHHHHHHHhccCCC-CCchhhhhhhccCC-CChHHHHHHHH
Q 016002 255 LMEDPQVQKMVYPSLPEEMRNPASFK----LMLQNPEYRKQLQEMLDGMCESG-EFDGRVLDSLKNFD-LNSAEVKQQFE 328 (397)
Q Consensus 255 Mm~nPqmQkM~ypyLPe~MRNP~tfk----~MlqNPqyrqQL~~Ml~~mgg~g-~~~~~m~d~L~~~D-~NnpEv~eqf~ 328 (397)
+.+|+++|+.+- -|+.++ |+ .|.+.|+++. |-+.|.+-|... .+=+...+.| ++. .+.........
T Consensus 28 ~~~D~efq~~~~-----yl~s~~-f~~l~~~l~~~pE~~~-l~~yL~~~gldv~~~i~~i~~~l-~~~~~~p~~~~~~~~ 99 (179)
T PF06757_consen 28 YLEDAEFQAAVR-----YLNSSE-FKQLWQQLEALPEVKA-LLDYLESAGLDVYYYINQINDLL-GLPPLNPTPSLSCSR 99 (179)
T ss_pred HHcCHHHHHHHH-----HHcChH-HHHHHHHHHcCHHHHH-HHHHHHHCCCCHHHHHHHHHHHH-cCCcCCCCccccccc
Confidence 577899987653 356664 33 6888999974 555666656543 1112222222 221 11111100001
Q ss_pred hcCCCh-HHHHHHhcCCHHHHhhc-----CCHHHHHHHHHHhhC--hHHHHHhhcCHHHHHHHHHHHH
Q 016002 329 QIGLTP-EEVITKMMANPEIALGF-----QSPRVQAAIMECSQN--PMNIIKYQNDKEVMSVITKIAE 388 (397)
Q Consensus 329 q~G~tp-EE~mskiMaDPEI~aam-----QDPeV~aALqDIssN--PaAI~KYqsDPKVm~~IqKL~a 388 (397)
..|+.. -+.+..++-=-+|.+++ .++++..++..+.+. =.-+.+..++|++.+++++|.+
T Consensus 100 ~~g~~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~~~~~~~~~~~~~~L~~ 167 (179)
T PF06757_consen 100 GGGLNGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNALWASPEFQRLLNELRE 167 (179)
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 122222 11122333333444444 588888888888866 4445778899999999999975
No 12
>PRK10878 hypothetical protein; Provisional
Probab=53.29 E-value=26 Score=28.56 Aligned_cols=42 Identities=2% Similarity=0.257 Sum_probs=26.3
Q ss_pred HHHHhcCCChHHHHHHhcC--CHHHHhhc------CCHHHHHHHHHHhhC
Q 016002 325 QQFEQIGLTPEEVITKMMA--NPEIALGF------QSPRVQAAIMECSQN 366 (397)
Q Consensus 325 eqf~q~G~tpEE~mskiMa--DPEI~aam------QDPeV~aALqDIssN 366 (397)
+.+.+........+++++. ||+|..-+ .||+++.++..|.++
T Consensus 14 ~~~~~l~~~e~~~Fe~LL~~~D~dL~~W~~g~~~p~d~~l~~iV~~Ir~~ 63 (72)
T PRK10878 14 HEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELERMVRLIQTR 63 (72)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 3333333333456888887 88888777 377777777766653
No 13
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=52.98 E-value=22 Score=27.92 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=4.1
Q ss_pred hChHHHHHhh
Q 016002 365 QNPMNIIKYQ 374 (397)
Q Consensus 365 sNPaAI~KYq 374 (397)
+||.++...+
T Consensus 44 ~n~e~Fl~ll 53 (59)
T PF09280_consen 44 QNPEEFLRLL 53 (59)
T ss_dssp HTHHHHHHHH
T ss_pred HCHHHHHHHH
Confidence 3444444433
No 14
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.09 E-value=40 Score=34.79 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=11.6
Q ss_pred HHHHhhcCHHHHHh
Q 016002 251 TLEKLMEDPQVQKM 264 (397)
Q Consensus 251 ~l~~Mm~nPqmQkM 264 (397)
.|+-+.++|+||+|
T Consensus 247 ~l~~Lr~~pqf~~l 260 (378)
T TIGR00601 247 PLEFLRNQPQFQQL 260 (378)
T ss_pred hHHHhhcCHHHHHH
Confidence 68888899999954
No 15
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=43.60 E-value=14 Score=30.56 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=9.4
Q ss_pred HHHHHhcCCHHHHhhcC
Q 016002 336 EVITKMMANPEIALGFQ 352 (397)
Q Consensus 336 E~mskiMaDPEI~aamQ 352 (397)
+..+++++||+|++.++
T Consensus 23 ~l~~~vl~dp~V~~Fl~ 39 (94)
T PF07319_consen 23 QLKQEVLSDPEVQAFLQ 39 (94)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHH
Confidence 35566666666666553
No 16
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=41.51 E-value=38 Score=33.68 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=21.8
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHHH
Q 016002 99 GSPLFWVGVGVGLSALFSFVASRLK 123 (397)
Q Consensus 99 gspl~wigvgvglsa~fs~~a~~~k 123 (397)
+.|+++||-|.|++-+.|++-.++.
T Consensus 213 ~~piImIa~GtGIAP~~s~l~~~~~ 237 (360)
T cd06199 213 DAPIIMVGPGTGIAPFRAFLQEREA 237 (360)
T ss_pred CCCEEEEecCcChHHHHHHHHHHHh
Confidence 5799999999999999999876553
No 17
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=35.35 E-value=64 Score=34.24 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhhccCCCChHHHHHHH
Q 016002 277 ASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQF 327 (397)
Q Consensus 277 ~tfk~MlqNPqyrqQL~~Ml~~mgg~g~~~~~m~d~L~~~D~NnpEv~eqf 327 (397)
+|.+-|+++=.|--..++.+....|+|.|.-.-|--+.|..+...+-+-+|
T Consensus 228 dtW~Sv~~I~d~~~~nqd~~~~~agPg~WNDpDmL~iGN~G~s~e~y~~qf 278 (414)
T KOG2366|consen 228 DTWKSVDSIIDYICWNQDRIAPLAGPGGWNDPDMLEIGNGGMSYEEYKGQF 278 (414)
T ss_pred hHHHHHHHHHHHHhhhhhhhccccCCCCCCChhHhhcCCCCccHHHHHHHH
Confidence 677788888887666777777878888787622223456667777777777
No 18
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=34.61 E-value=2.8e+02 Score=24.36 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=28.9
Q ss_pred hcCCH-HHHHHHHHHh-hChHHHHHhhcC-HHHH-HHHHHHHHhCCC
Q 016002 350 GFQSP-RVQAAIMECS-QNPMNIIKYQND-KEVM-SVITKIAELFPG 392 (397)
Q Consensus 350 amQDP-eV~aALqDIs-sNPaAI~KYqsD-PKVm-~~IqKL~akFgG 392 (397)
.+.|. ++.++++++. +||..+.+|.+- .+++ -++-.++....|
T Consensus 86 ~isd~~el~~~v~~vi~~~~~~v~~~~~g~~k~~~~l~G~vMk~~~G 132 (147)
T smart00845 86 QISDEGELEAIVDEVIAENPKAVEDYRAGKKKALGFLVGQVMKATRG 132 (147)
T ss_pred cCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHhcC
Confidence 34676 7888888855 789999999744 3444 444455556665
No 19
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=34.35 E-value=1.3e+02 Score=31.23 Aligned_cols=104 Identities=11% Similarity=0.145 Sum_probs=61.7
Q ss_pred HHhhChHHHHHHHHHHHhccCC-CCCchhhhhhhccCCCChHHHHHHHHhcCCChHHHHHHhcCCHHHHhhcCCH--HHH
Q 016002 281 LMLQNPEYRKQLQEMLDGMCES-GEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSP--RVQ 357 (397)
Q Consensus 281 ~MlqNPqyrqQL~~Ml~~mgg~-g~~~~~m~d~L~~~D~NnpEv~eqf~q~G~tpEE~mskiMaDPEI~aamQDP--eV~ 357 (397)
.|=.+|..+++|++++..++-- .+.+. ...|+|.+ .+-.-+++... .=..+..-+.|||....+++- .+.
T Consensus 261 ~~~~~~~ll~~l~~l~~~l~~ll~~l~~--~~lL~Nle----~lt~~LA~as~-~l~~l~~~l~~p~~~~~L~qtl~sl~ 333 (370)
T PLN03094 261 LMEEARPLLLKIQAMAEDLQPLLSEVRD--SGLLKEVE----KLTRVAAEASE-DLRRLNSSILTPENTELLRQSIYTLT 333 (370)
T ss_pred HHhhcHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHH----HHHHHHHHHHH-HHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 4556788999999988886543 11111 22333311 11111111000 001255567788888766542 355
Q ss_pred HHHHHHhhChHHHHHhhcCHHHHHHHHHHHHhCC
Q 016002 358 AAIMECSQNPMNIIKYQNDKEVMSVITKIAELFP 391 (397)
Q Consensus 358 aALqDIssNPaAI~KYqsDPKVm~~IqKL~akFg 391 (397)
++++++..==..+.++.+||.+++-+.+|++.++
T Consensus 334 ~t~~ni~~vs~dv~~ft~D~~~r~~Lr~li~~Ls 367 (370)
T PLN03094 334 KTLKHIESISSDISGFTGDEATRRNLKQLIQSLS 367 (370)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 5666676667778999999999999999988654
No 20
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=34.17 E-value=3.8e+02 Score=25.54 Aligned_cols=41 Identities=27% Similarity=0.482 Sum_probs=24.8
Q ss_pred HHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhc
Q 016002 252 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGM 299 (397)
Q Consensus 252 l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~m 299 (397)
|..++++...+++.--.+ +.+...+.+|+.++.|.+++...
T Consensus 131 l~~ll~~~~~~~l~~~il-------~~i~~~l~~~e~~~~I~~~i~~~ 171 (367)
T PF04286_consen 131 LRSLLEEEQHQKLLDRIL-------EKIKEYLKSEETRERIRDLIEEF 171 (367)
T ss_pred HHHHHhccchHHHHHHHH-------HHHHHHHcCchHHHHHHHHHHHH
Confidence 344455555554443322 44556778888887777777665
No 21
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.76 E-value=2.4e+02 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=20.9
Q ss_pred HHHhcCCHHHHhhc----CCHHHH-HHHHHHh-hChHHHHHhhcCHH
Q 016002 338 ITKMMANPEIALGF----QSPRVQ-AAIMECS-QNPMNIIKYQNDKE 378 (397)
Q Consensus 338 mskiMaDPEI~aam----QDPeV~-aALqDIs-sNPaAI~KYqsDPK 378 (397)
+.-+..+|.++.+. +||++. .+|++|. +||.-++-.+.||+
T Consensus 248 l~~Lr~~pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~q~I~~n~e 294 (378)
T TIGR00601 248 LEFLRNQPQFQQLRQVVQQNPQLLPPLLQQIGQENPQLLQQISQHPE 294 (378)
T ss_pred HHHhhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHH
Confidence 44455555554443 366543 3344444 45666655555554
No 22
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=33.70 E-value=17 Score=36.12 Aligned_cols=48 Identities=19% Similarity=0.492 Sum_probs=40.4
Q ss_pred HHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhcc
Q 016002 253 EKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMC 300 (397)
Q Consensus 253 ~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~mg 300 (397)
..+-+||.-..++-.+||+..||...-.-+-.||..|+-+++++.+.|
T Consensus 214 lRLsdnprar~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 214 LRLSDNPRAREALRQCLPDQLRDGTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp HHHTTSTTHHHHHHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 456789999999999999999998777778889999999999998865
No 23
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=31.22 E-value=39 Score=24.70 Aligned_cols=11 Identities=18% Similarity=0.727 Sum_probs=5.1
Q ss_pred HhcCCHHHHhh
Q 016002 340 KMMANPEIALG 350 (397)
Q Consensus 340 kiMaDPEI~aa 350 (397)
++|+||||+..
T Consensus 18 ~~l~Dpdvqrg 28 (42)
T PF07849_consen 18 RALRDPDVQRG 28 (42)
T ss_pred HHHcCHHHHHH
Confidence 44444444443
No 24
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=31.09 E-value=55 Score=33.06 Aligned_cols=24 Identities=29% Similarity=0.674 Sum_probs=21.0
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHH
Q 016002 99 GSPLFWVGVGVGLSALFSFVASRL 122 (397)
Q Consensus 99 gspl~wigvgvglsa~fs~~a~~~ 122 (397)
..|+++||-|.|++-+.|++-.+.
T Consensus 241 ~~piImIa~GtGIAP~rs~lq~~~ 264 (398)
T cd06203 241 RRPIIMVGPGTGVAPFLGFLQHRE 264 (398)
T ss_pred CCCEEEEcCCcChHHHHHHHHHHH
Confidence 579999999999999999987553
No 25
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=30.76 E-value=38 Score=23.66 Aligned_cols=16 Identities=31% Similarity=0.764 Sum_probs=12.7
Q ss_pred hhhhhhhhhHHHHHHHH
Q 016002 103 FWVGVGVGLSALFSFVA 119 (397)
Q Consensus 103 ~wigvgvglsa~fs~~a 119 (397)
.|| +||+|.++|+.+.
T Consensus 5 aWi-lG~~lA~~~~i~~ 20 (28)
T PF08173_consen 5 AWI-LGVLLACAFGILN 20 (28)
T ss_pred HHH-HHHHHHHHHHHHH
Confidence 466 7999999998764
No 26
>cd01067 globin_like superfamily containing globins and truncated hemoglobins
Probab=28.53 E-value=1.5e+02 Score=24.31 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=36.3
Q ss_pred HHHHHhcCC-HHHHhhcCC-----------HHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHHh
Q 016002 336 EVITKMMAN-PEIALGFQS-----------PRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAEL 389 (397)
Q Consensus 336 E~mskiMaD-PEI~aamQD-----------PeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~ak 389 (397)
..+.+++.+ ||++..|.. +.+...-+.+..-=..+.....|+++...+.+|...
T Consensus 5 ~fy~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 70 (117)
T cd01067 5 DFYKHLFENYPPLRKYFKSREEYTADVQNDPFFKKQGQKILLAIHVACAGYDDREFNAKTRELASR 70 (117)
T ss_pred HHHHHHHHhChhHHHHCCCCCCCHHhccCCHHHHHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHH
Confidence 467888875 599999986 666665555555545455555677777777777653
No 27
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=28.35 E-value=2.4e+02 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=10.6
Q ss_pred cccHHHHHHhhcCHHHH
Q 016002 246 FLTVDTLEKLMEDPQVQ 262 (397)
Q Consensus 246 ~~~~~~l~~Mm~nPqmQ 262 (397)
.++.+.|..-++++.+.
T Consensus 54 ll~~~~i~~~l~~~~~~ 70 (367)
T PF04286_consen 54 LLTPETIRRKLESEDFS 70 (367)
T ss_pred CCCHHHHHHHHhcccHH
Confidence 35666666666666666
No 28
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=28.31 E-value=67 Score=26.88 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=8.5
Q ss_pred HHHHHHHhhChHHHHHhhcCH
Q 016002 357 QAAIMECSQNPMNIIKYQNDK 377 (397)
Q Consensus 357 ~aALqDIssNPaAI~KYqsDP 377 (397)
...|+++.++|+....|..||
T Consensus 7 nrli~~L~~dp~~rerF~~DP 27 (81)
T cd07922 7 NRLIQELFKDPGLIERFQDDP 27 (81)
T ss_pred HHHHHHHhcCHHHHHHHHHCH
Confidence 333444444444444444443
No 29
>COG2427 Uncharacterized conserved protein [Function unknown]
Probab=27.92 E-value=93 Score=27.97 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHhhChHHHHHHHHHHHhccCCCCCch-hhhhhhcc
Q 016002 277 ASFKLMLQNPEYRKQLQEMLDGMCESGEFDG-RVLDSLKN 315 (397)
Q Consensus 277 ~tfk~MlqNPqyrqQL~~Ml~~mgg~g~~~~-~m~d~L~~ 315 (397)
..+..+++++.+...|.+++.-++..+.-+. ++.+.+.+
T Consensus 58 ~~~~~~l~~e~~~~ll~~~~~~~~~l~~~~~e~~~~~~~~ 97 (148)
T COG2427 58 KKLKDELAKELIENLLNNMLIMLGLLSLIDSERLSKLVEN 97 (148)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4566889999998888888777665443333 34444333
No 30
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.83 E-value=12 Score=39.01 Aligned_cols=44 Identities=18% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HhcCCHHHHhhcCCHHHHHHHHHHhhChHH-----------HHHhhcCHHHHHHHH
Q 016002 340 KMMANPEIALGFQSPRVQAAIMECSQNPMN-----------IIKYQNDKEVMSVIT 384 (397)
Q Consensus 340 kiMaDPEI~aamQDPeV~aALqDIssNPaA-----------I~KYqsDPKVm~~Iq 384 (397)
.+.++|+++..+.+++++ +.++|..||.+ |.|.++||+|+..|+
T Consensus 281 ~~g~~p~~M~g~~~~~~~-m~~~m~~~~~n~~~~~~p~~~gi~ki~~dpev~aAfq 335 (377)
T KOG1308|consen 281 FLGGFPGGMPGSFPGDKR-MTDGMKGFDGNSPVKQQPNQIGISKILSDPEVAAAFQ 335 (377)
T ss_pred ccCCCcccCCCCCCCccc-cccccccCCCCCccccCCCcccHhhhcCchHHHHhhc
Confidence 344577777777778777 77777777544 446666666665554
No 31
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=26.18 E-value=41 Score=29.37 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=19.5
Q ss_pred CCcchhhhhhhhhHHHHHHHHHH
Q 016002 99 GSPLFWVGVGVGLSALFSFVASR 121 (397)
Q Consensus 99 gspl~wigvgvglsa~fs~~a~~ 121 (397)
..++++|+-|+|++.+.+++-..
T Consensus 97 ~~~~v~ia~G~Giap~~~~l~~~ 119 (223)
T cd00322 97 SGPVVLIAGGIGITPFRSMLRHL 119 (223)
T ss_pred CCcEEEEecCCchhHHHHHHHHH
Confidence 47999999999999999986443
No 32
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=25.66 E-value=1e+02 Score=30.78 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=21.2
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHH
Q 016002 99 GSPLFWVGVGVGLSALFSFVASRL 122 (397)
Q Consensus 99 gspl~wigvgvglsa~fs~~a~~~ 122 (397)
..|+++||-|+|++-+.|++-.+.
T Consensus 230 ~~plImIa~GtGIAP~rs~l~~~~ 253 (382)
T cd06207 230 KKPIIMVGPGTGLAPFRAFLQERA 253 (382)
T ss_pred CCCEEEEcCCccHHHHHHHHHHHH
Confidence 579999999999999999986554
No 33
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=24.71 E-value=60 Score=32.33 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.4
Q ss_pred HHhhChHHHHHHHHHHHhccCCC
Q 016002 281 LMLQNPEYRKQLQEMLDGMCESG 303 (397)
Q Consensus 281 ~MlqNPqyrqQL~~Ml~~mgg~g 303 (397)
-+-+|||||.|.++|....|..+
T Consensus 55 ei~knsqFR~~Fq~Mca~IGvDP 77 (249)
T KOG3341|consen 55 EIRKNSQFRNQFQEMCASIGVDP 77 (249)
T ss_pred HHhhCHHHHHHHHHHHHHcCCCc
Confidence 56799999999999999999655
No 34
>PRK08051 fre FMN reductase; Validated
Probab=22.72 E-value=94 Score=28.39 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=18.3
Q ss_pred CCcchhhhhhhhhHHHHHHHH
Q 016002 99 GSPLFWVGVGVGLSALFSFVA 119 (397)
Q Consensus 99 gspl~wigvgvglsa~fs~~a 119 (397)
+.|+++|+-|+|+..+.+++-
T Consensus 102 ~~~~vliagG~GiaP~~~~l~ 122 (232)
T PRK08051 102 ERPLLLIAGGTGFSYARSILL 122 (232)
T ss_pred CCcEEEEecCcCcchHHHHHH
Confidence 579999999999999988753
No 35
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=21.90 E-value=6.7e+02 Score=25.09 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=17.8
Q ss_pred ccHHHHHHhhc--CHHHHHhhcCCCcccc
Q 016002 247 LTVDTLEKLME--DPQVQKMVYPSLPEEM 273 (397)
Q Consensus 247 ~~~~~l~~Mm~--nPqmQkM~ypyLPe~M 273 (397)
++.+.|..+++ +||.+-++..|||...
T Consensus 120 ld~~~l~~lL~~EhpqtiA~iLs~l~~~~ 148 (339)
T PRK05686 120 MDPQQLANFIRNEHPQTIALILSYLKPDQ 148 (339)
T ss_pred CCHHHHHHHHHhcCHHHHHHHHhCCCHHH
Confidence 55666666664 5777777777776543
No 36
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=21.88 E-value=59 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.492 Sum_probs=20.4
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHH
Q 016002 99 GSPLFWVGVGVGLSALFSFVASRL 122 (397)
Q Consensus 99 gspl~wigvgvglsa~fs~~a~~~ 122 (397)
+.|++|||-|+|++.+.|++...+
T Consensus 135 ~~~~vlIagGtGIaP~~s~l~~~~ 158 (286)
T cd06208 135 NATLIMIATGTGIAPFRSFLRRLF 158 (286)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH
Confidence 468999999999999999975543
No 37
>PRK10878 hypothetical protein; Provisional
Probab=21.26 E-value=1.7e+02 Score=23.97 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=25.7
Q ss_pred ccCCHHHHHHHhh-----ChHHHHHHHHHHHhccCCC
Q 016002 272 EMRNPASFKLMLQ-----NPEYRKQLQEMLDGMCESG 303 (397)
Q Consensus 272 ~MRNP~tfk~Mlq-----NPqyrqQL~~Ml~~mgg~g 303 (397)
...|++.|.|++. ||+++.-|+.+.++-...|
T Consensus 32 ~~~D~dL~~W~~g~~~p~d~~l~~iV~~Ir~~~~~~~ 68 (72)
T PRK10878 32 ECDDPDLFNWLMNHGKPADAELERMVRLIQTRNRERG 68 (72)
T ss_pred cCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 3568999999998 9999998888887655443
No 38
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=20.87 E-value=57 Score=29.66 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=18.8
Q ss_pred CCcchhhhhhhhhHHHHHHHH
Q 016002 99 GSPLFWVGVGVGLSALFSFVA 119 (397)
Q Consensus 99 gspl~wigvgvglsa~fs~~a 119 (397)
+.+++||+-|+|++.+.|++-
T Consensus 122 ~~~~v~iagG~Giap~~s~l~ 142 (243)
T cd06216 122 PPRLLLIAAGSGITPVMSMLR 142 (243)
T ss_pred CCCEEEEecCccHhHHHHHHH
Confidence 579999999999999988864
No 39
>PF08125 Mannitol_dh_C: Mannitol dehydrogenase C-terminal domain; InterPro: IPR013118 Long-chain mannitol dehydrogenases are a group of secondary alcohol dehydrogenases that differ from other alcohol or polyol dehydrogenases in that they do not utilise Zn(2+) or other metal cofactors and do not contain a conserved catalytic tyrosine residue. The proteins in this family that have been studied are monomeric enzymes of ~54 kDa and include: Mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) [] Mannitol 2-dehydrogenase (1.1.1.67 from EC) [] D-arabinitol 4-dehydrogenase (1.1.1.11 from EC) [] Altronate oxidoreductase (1.1.1.58 from EC) D-mannonate oxidoreductase (1.1.1.57 from EC) These enzymes are mostly found in bacteria, though they are also present in some fungal species. This entry represents the C-terminal substrate-binding domain of long-chain mannitol dehydrogenases. This domain is primarily alpha-helical in nature, being composed of eleven helices and a small beta hairpin []. Most of the residues implicated in substrate binding are located within this region, and a conserved lysine residue is thought to act as a proton acceptor during catalysis.; GO: 0016491 oxidoreductase activity, 0050662 coenzyme binding, 0055114 oxidation-reduction process; PDB: 3H2Z_A 1M2W_A 1LJ8_A.
Probab=20.81 E-value=1.7e+02 Score=27.77 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=29.7
Q ss_pred hcCCHHHHhhcCCHHHHHHHHHHhhC--hHHHHHhhcCHHHHHHHHHHHHhCC
Q 016002 341 MMANPEIALGFQSPRVQAAIMECSQN--PMNIIKYQNDKEVMSVITKIAELFP 391 (397)
Q Consensus 341 iMaDPEI~aamQDPeV~aALqDIssN--PaAI~KYqsDPKVm~~IqKL~akFg 391 (397)
+.+=.-|.++|+||++++.+..++.. =-.+.+| ..-++..-++++.++|.
T Consensus 92 l~G~~tV~ea~~d~~i~~~v~~~~~ee~~p~l~~~-~~~dl~~y~~~~l~RF~ 143 (245)
T PF08125_consen 92 LAGYETVHEAMADPEIRAFVRRLMEEEIAPLLPKY-PGEDLEAYADKVLERFS 143 (245)
T ss_dssp HCT--BHHHHHTSHHHHHHHHHHHHHCCHHHHHHH-TCHHHHHHHHHHHHHHT
T ss_pred hcCccChHHhhCchHHHHHHHHHHHHHHHhhcCCc-chhhHHHHHHHHHHhcC
Confidence 33444556666667777777776643 2235555 66666666777777764
No 40
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=20.63 E-value=1.2e+02 Score=31.48 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=22.3
Q ss_pred HHHhcCCHHHHhhc----CCHHHHHH-HHHHh-hChHHHHHhhcCHH
Q 016002 338 ITKMMANPEIALGF----QSPRVQAA-IMECS-QNPMNIIKYQNDKE 378 (397)
Q Consensus 338 mskiMaDPEI~aam----QDPeV~aA-LqDIs-sNPaAI~KYqsDPK 378 (397)
++-++++|.++++. |||++.+. ||+|- +||+-++-.+.|++
T Consensus 216 l~fLr~~~qf~~lR~~iqqNP~ll~~~Lqqlg~~nP~L~q~Iq~nqe 262 (340)
T KOG0011|consen 216 LEFLRNQPQFQQLRQMIQQNPELLHPLLQQLGKQNPQLLQLIQENQE 262 (340)
T ss_pred hhhhhccHHHHHHHHHHhhCHHHHHHHHHHHhhhCHHHHHHHHHHHH
Confidence 44455555555544 46665544 33343 56666666666654
Done!