Query 016002
Match_columns 397
No_of_seqs 122 out of 212
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 06:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnm_A Protein TIC 40, chlorop 99.8 5.8E-20 2E-24 139.4 8.2 62 334-395 1-62 (62)
2 2llw_A Heat shock protein STI1 99.7 1.4E-18 4.7E-23 136.6 6.6 60 329-388 4-63 (71)
3 2llv_A Heat shock protein STI1 99.3 4.4E-13 1.5E-17 104.3 1.7 53 336-388 14-67 (71)
4 2lnm_A Protein TIC 40, chlorop 97.2 0.00035 1.2E-08 52.7 4.9 48 252-303 14-61 (62)
5 2llw_A Heat shock protein STI1 96.6 0.0017 5.9E-08 50.9 3.9 43 252-298 22-64 (71)
6 2kqz_A Proteasomal ubiquitin r 95.4 0.0042 1.4E-07 54.9 1.3 52 246-297 39-93 (155)
7 2kr0_A Proteasomal ubiquitin r 94.0 0.037 1.3E-06 55.7 4.2 55 245-299 294-351 (411)
8 2qsf_X RAD23, UV excision repa 93.1 0.026 9E-07 50.9 1.3 38 252-293 25-68 (171)
9 2llv_A Heat shock protein STI1 85.9 0.2 6.7E-06 38.7 0.7 23 275-298 22-44 (71)
10 3fse_A Two-domain protein cont 57.4 21 0.0007 34.9 6.8 99 249-373 229-336 (365)
11 2qsf_X RAD23, UV excision repa 49.6 9.6 0.00033 34.3 2.8 38 338-378 39-82 (171)
12 3ltm_A Alpha-REP4; protein eng 48.6 63 0.0021 26.4 7.5 15 286-300 64-78 (211)
13 3pkr_A FLIG, flagellar motor s 48.5 40 0.0014 32.1 7.0 52 246-298 60-129 (279)
14 2fv2_A RCD1 required for cell 44.9 14 0.00049 35.5 3.4 52 249-300 216-267 (268)
15 2zs0_B Extracellular giant hem 41.9 31 0.001 28.1 4.5 54 336-389 30-93 (142)
16 2zs0_C Extracellular giant hem 41.8 30 0.001 28.4 4.5 53 336-388 34-96 (147)
17 1oqy_A HHR23A, UV excision rep 39.6 23 0.00079 34.7 4.0 40 251-294 236-280 (368)
18 1x46_A Globin chain, hemoglobi 39.2 1.2E+02 0.0041 24.6 7.7 54 335-388 27-97 (150)
19 1pve_A HHR23B, UV excision rep 38.8 17 0.00057 28.8 2.3 11 252-262 6-16 (72)
20 2zs0_A Extracellular giant hem 37.9 38 0.0013 27.5 4.5 53 336-388 30-92 (140)
21 2f4m_B UV excision repair prot 37.9 44 0.0015 25.5 4.5 7 344-350 23-29 (61)
22 1x9f_D Globin C, hemoglobin ch 37.4 40 0.0014 27.3 4.5 53 336-388 30-92 (140)
23 1x9f_C Erythrocruorin, globin 35.2 59 0.002 26.8 5.3 53 336-388 38-100 (153)
24 1yhu_D Hemoglobin B2 chain; gl 34.9 45 0.0015 27.4 4.5 53 336-388 34-96 (149)
25 1ith_A Hemoglobin (cyano Met); 34.9 24 0.00084 28.6 2.9 52 336-388 28-92 (141)
26 2nrl_A Myoglobin; transport pr 34.8 67 0.0023 26.3 5.6 51 336-388 24-87 (147)
27 1sct_B Hemoglobin II (carbonmo 33.4 90 0.0031 25.5 6.1 53 336-388 37-101 (151)
28 2ffh_A Protein (FFH); SRP54, s 32.8 1.2E+02 0.004 30.1 7.8 98 283-396 320-422 (425)
29 1yhu_B Giant hemoglobins B cha 31.5 51 0.0017 26.6 4.2 54 336-389 32-95 (144)
30 3hjl_A Flagellar motor switch 31.5 77 0.0026 30.7 6.1 51 247-298 116-184 (329)
31 1h97_A Globin-3; HET: HEM; 1.1 31.3 46 0.0016 27.6 4.0 54 336-389 30-97 (147)
32 3g46_A Globin-1; oxygen transp 31.0 58 0.002 26.7 4.6 53 336-388 35-99 (146)
33 1x9f_B Erythrocruorin, globin 31.0 58 0.002 26.5 4.5 53 336-388 32-94 (145)
34 1jf3_A Monomer hemoglobin comp 29.9 61 0.0021 26.1 4.5 53 336-388 29-88 (147)
35 1it2_A Hemoglobin; hagfish, de 28.6 60 0.002 26.7 4.3 54 335-388 35-101 (146)
36 1x9f_A Globin IV, extracellula 28.1 52 0.0018 27.2 3.8 53 336-388 37-99 (151)
37 1zoq_C CREB-binding protein, i 27.9 59 0.002 24.2 3.6 15 309-325 6-20 (47)
38 1yhu_C Hemoglobin B1A chain; g 27.4 75 0.0025 26.0 4.6 53 336-388 35-97 (148)
39 4hrt_B Hemoglobin B chain; oxy 27.0 1.2E+02 0.004 25.0 5.8 53 336-388 38-102 (152)
40 3a1f_A Cytochrome B-245 heavy 26.9 32 0.0011 27.8 2.3 26 99-124 17-42 (186)
41 2vyw_A Hemoglobin; trematode, 26.8 56 0.0019 27.1 3.8 54 336-389 31-98 (148)
42 2f4m_B UV excision repair prot 26.5 31 0.0011 26.3 2.0 31 252-299 4-34 (61)
43 3l4h_A E3 ubiquitin-protein li 26.4 84 0.0029 26.5 4.8 51 336-386 15-66 (109)
44 2k7r_A Primosomal protein DNAI 26.0 28 0.00095 28.1 1.7 17 336-352 23-39 (106)
45 1b0b_A Hemoglobin; hemoprotein 26.0 1.5E+02 0.0052 23.8 6.2 53 336-388 27-94 (142)
46 1pve_A HHR23B, UV excision rep 25.6 34 0.0012 27.0 2.1 12 340-351 21-32 (72)
47 1x3k_A Hemoglobin component V; 25.6 86 0.0029 25.9 4.7 53 336-388 30-96 (152)
48 2k7r_A Primosomal protein DNAI 25.1 63 0.0021 26.0 3.7 16 347-362 25-40 (106)
49 1mba_A Myoglobin; oxygen stora 25.0 65 0.0022 26.1 3.8 53 336-388 28-94 (147)
50 1sct_A Hemoglobin II (carbonmo 24.9 86 0.0029 25.6 4.5 53 336-388 36-100 (150)
51 1q1f_A Neuroglobin; globin fol 22.8 2.9E+02 0.0099 22.0 9.2 50 247-300 23-73 (151)
52 4eh1_A Flavohemoprotein; struc 22.8 37 0.0013 29.0 2.0 25 98-122 113-137 (243)
53 2kjf_A Carnocyclin-A; circular 22.7 43 0.0015 25.5 2.1 27 105-131 32-58 (60)
54 1lhs_A Myoglobin; oxygen stora 22.6 1.1E+02 0.0037 25.2 4.8 51 336-388 27-91 (153)
55 1hlm_A Hemoglobin (cyano Met); 21.4 80 0.0027 25.9 3.7 54 335-388 37-103 (159)
56 2lhb_A Hemoglobin V (cyano Met 21.3 1.2E+02 0.004 24.8 4.7 53 336-388 36-103 (149)
57 1a6m_A Myoglobin; heme protein 20.9 1.2E+02 0.0042 24.8 4.8 51 336-388 27-91 (151)
58 2dc3_A Cytoglobin; myoglobin, 20.8 1.1E+02 0.0038 26.4 4.7 53 336-388 47-114 (193)
59 1o9i_A Pseudocatalase; oxidore 20.8 66 0.0023 30.6 3.4 18 371-388 159-176 (266)
60 2wy4_A Single domain haemoglob 20.6 44 0.0015 26.6 1.9 46 336-388 26-82 (140)
No 1
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=99.81 E-value=5.8e-20 Score=139.41 Aligned_cols=62 Identities=73% Similarity=1.238 Sum_probs=60.1
Q ss_pred hHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHHhCCCCCC
Q 016002 334 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG 395 (397)
Q Consensus 334 pEE~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~akFgG~~~ 395 (397)
||+.++++++|||++++|+||+|+++|+||++||+++++|++||+|+.+|+||.++|||++|
T Consensus 1 ~~e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~~ 62 (62)
T 2lnm_A 1 PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG 62 (62)
T ss_dssp CHHHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCCC
T ss_pred CHHHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHhCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999876
No 2
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.4e-18 Score=136.58 Aligned_cols=60 Identities=28% Similarity=0.436 Sum_probs=57.9
Q ss_pred hcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 016002 329 QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 388 (397)
Q Consensus 329 q~G~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~a 388 (397)
..|++++|++.++|+||||+++|+||+|+++|+||++||++++||++||+|+++|+||++
T Consensus 4 ~~~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~ 63 (71)
T 2llw_A 4 TSNETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA 63 (71)
T ss_dssp TCCSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999976
No 3
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=4.4e-13 Score=104.28 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHH-hhcCHHHHHHHHHHHH
Q 016002 336 EVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK-YQNDKEVMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~K-YqsDPKVm~~IqKL~a 388 (397)
+.++++++|||++++|+||+|+++|+||++||++|++ |++||+|+++|.||..
T Consensus 14 ~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g 67 (71)
T 2llv_A 14 NLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMG 67 (71)
T ss_dssp SCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHc
Confidence 3578999999999999999999999999999999999 9999999999999964
No 4
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=97.24 E-value=0.00035 Score=52.73 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=40.9
Q ss_pred HHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccCCC
Q 016002 252 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESG 303 (397)
Q Consensus 252 l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~mgg~g 303 (397)
+..+|+||+|++++.- .++||..+..+|+||.+++.++.+++-+||-+
T Consensus 14 ~~~~m~dP~~~~~lq~----i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~ 61 (62)
T 2lnm_A 14 VAMAFQNPRVQAALME----CSENPMNIMKYQNDKEVMDVFNKISQLFPGMT 61 (62)
T ss_dssp HHHHTTSHHHHHHHHH----HTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred HHHHcCCHHHHHHHHH----HHHCHHHHHHHHhChHHHHHHHHHHHHhCCCC
Confidence 4566777777776665 88999999999999999999999999999854
No 5
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0017 Score=50.92 Aligned_cols=43 Identities=28% Similarity=0.570 Sum_probs=34.0
Q ss_pred HHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHh
Q 016002 252 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG 298 (397)
Q Consensus 252 l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~ 298 (397)
|..+|+||+|++++.- .|+||..+..+|+||.+++.|+.+.+.
T Consensus 22 i~~im~DP~~~~~lq~----~~~NP~~~~k~~~nP~v~~~i~kl~~a 64 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQ----AQQNPAALQEHMKNPEVFKKIQTLIAA 64 (71)
T ss_dssp HHHHHTCTHHHHHHHH----HHHCHHHHHHHHHSHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHH----HHHCHHHHHHHHhCHHHHHHHHHHHHc
Confidence 4456667777766665 788999999999999999999988764
No 6
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=95.40 E-value=0.0042 Score=54.88 Aligned_cols=52 Identities=19% Similarity=0.398 Sum_probs=44.9
Q ss_pred cccHHHHHHhhcCHHHHHhhcCCCccccC---CHHHHHHHhhChHHHHHHHHHHH
Q 016002 246 FLTVDTLEKLMEDPQVQKMVYPSLPEEMR---NPASFKLMLQNPEYRKQLQEMLD 297 (397)
Q Consensus 246 ~~~~~~l~~Mm~nPqmQkM~ypyLPe~MR---NP~tfk~MlqNPqyrqQL~~Ml~ 297 (397)
.++.+.|..+++||++++-+++|||+.-+ +++-++..++.|||+|.|.-+=.
T Consensus 39 vLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~fs~ 93 (155)
T 2kqz_A 39 VLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSA 93 (155)
T ss_dssp HTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHHHH
Confidence 45667888999999999999999998865 88999999999999999876533
No 7
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=93.99 E-value=0.037 Score=55.66 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=45.8
Q ss_pred ccccHHHHHHhhcCHHHHHhhcCCCcccc---CCHHHHHHHhhChHHHHHHHHHHHhc
Q 016002 245 RFLTVDTLEKLMEDPQVQKMVYPSLPEEM---RNPASFKLMLQNPEYRKQLQEMLDGM 299 (397)
Q Consensus 245 ~~~~~~~l~~Mm~nPqmQkM~ypyLPe~M---RNP~tfk~MlqNPqyrqQL~~Ml~~m 299 (397)
..|+.+.|..+++||++++-+.+|||+.= +.++-++..++.|||+|.|+-+=..+
T Consensus 294 dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL 351 (411)
T 2kr0_A 294 SVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAAL 351 (411)
T ss_dssp GTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHH
T ss_pred HhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999853 37788888889999999997654443
No 8
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=93.12 E-value=0.026 Score=50.88 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=27.0
Q ss_pred HHHhh-cCHHHHHhhcCCCccccCCHHHHHHHhh-----ChHHHHHHH
Q 016002 252 LEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQ-----NPEYRKQLQ 293 (397)
Q Consensus 252 l~~Mm-~nPqmQkM~ypyLPe~MRNP~tfk~Mlq-----NPqyrqQL~ 293 (397)
|+-|+ ++|+||+|..= -.+||+.+.-||| ||++.++|.
T Consensus 25 l~~L~~~~Pqf~qlRq~----vqqNPqlL~~lLqqig~~NPqL~qlI~ 68 (171)
T 2qsf_X 25 PGSIGLTVEDLLSLRQV----VSGNPEALAPLLENISARYPQLREHIM 68 (171)
T ss_dssp ---CCCCHHHHHHHHHH----HHTCGGGHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHhcCHHHHHHHHH----HHHCHHHHHHHHHHHHhhCHHHHHHHH
Confidence 88899 99999887543 3468888888876 888887764
No 9
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=85.94 E-value=0.2 Score=38.70 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=13.8
Q ss_pred CHHHHHHHhhChHHHHHHHHHHHh
Q 016002 275 NPASFKLMLQNPEYRKQLQEMLDG 298 (397)
Q Consensus 275 NP~tfk~MlqNPqyrqQL~~Ml~~ 298 (397)
||+|.++ |++|+|++.|+++.++
T Consensus 22 dP~t~~~-~~DP~~~~~lq~i~~N 44 (71)
T 2llv_A 22 NPKTSEM-MKDPQLVAKLIGYKQN 44 (71)
T ss_dssp SSTTHHH-HHSCTHHHHHHHHHHS
T ss_pred ChHHHHH-hcCHHHHHHHHHHHHC
Confidence 4444443 3677777777776665
No 10
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=57.35 E-value=21 Score=34.89 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=60.7
Q ss_pred HHHHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHH-HHHHHHHHHhccCCCCCchhhhhhhccCCCChHHHHHHH
Q 016002 249 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEY-RKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQF 327 (397)
Q Consensus 249 ~~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqy-rqQL~~Ml~~mgg~g~~~~~m~d~L~~~D~NnpEv~eqf 327 (397)
+++.+.-++||.++ ..|+-|.+|-+. -++|++-+.++|+-..|+..+.+.+.+.-..
T Consensus 229 ~e~~a~~~~d~~~~--------------~~~~~i~~~~~~h~~~l~~~~~~~g~~~~~~~~~~~~~a~~~~~-------- 286 (365)
T 3fse_A 229 LEKYTEKESDVEAK--------------ALFQEMITNKQRHIEYLETYLTRLGEKPSLSANIANQYAKVKTA-------- 286 (365)
T ss_dssp HHHHHHHCCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCC-------------------
T ss_pred HHHHHHhcCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhCCCcCcCcchhHHHHHHHHH--------
Confidence 34445567899999 789999988766 4779999999999887777664443332100
Q ss_pred HhcCCChHHHHHHhcCC--------HHHHhhcCCHHHHHHHHHHhhChHHHHHh
Q 016002 328 EQIGLTPEEVITKMMAN--------PEIALGFQSPRVQAAIMECSQNPMNIIKY 373 (397)
Q Consensus 328 ~q~G~tpEE~mskiMaD--------PEI~aamQDPeV~aALqDIssNPaAI~KY 373 (397)
-.+-++-+.+.++++| -++..-+.||+=.++|.+|.. .+.||
T Consensus 287 -~~~~~~~~~l~~al~~~~~gi~~~~~l~~~~~dp~~~~i~~~i~~---~l~~~ 336 (365)
T 3fse_A 287 -LTGSDDIYQIRSALGDIQTGIGDIGNLCAMYTDPIATAIFKEIYK---DLVKY 336 (365)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHH---HHHHH
T ss_pred -hcCCChHHHHHHHhcchhhhHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHH
Confidence 0112222344444443 345666789999999999988 45555
No 11
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=49.60 E-value=9.6 Score=34.31 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHHhcCCHHHHhhc------CCHHHHHHHHHHhhChHHHHHhhcCHH
Q 016002 338 ITKMMANPEIALGF------QSPRVQAAIMECSQNPMNIIKYQNDKE 378 (397)
Q Consensus 338 mskiMaDPEI~aam------QDPeV~aALqDIssNPaAI~KYqsDPK 378 (397)
.+-+.+||+++..| +||.+.+ -|++||..+...+++|.
T Consensus 39 Rq~vqqNPqlL~~lLqqig~~NPqL~q---lI~qNqe~Fl~mLnep~ 82 (171)
T 2qsf_X 39 RQVVSGNPEALAPLLENISARYPQLRE---HIMANPEVFVSMLLEAV 82 (171)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHCTTHHH---HHHHCHHHHHHHHHHCC
T ss_pred HHHHHHCHHHHHHHHHHHHhhCHHHHH---HHHHCHHHHHHHHhCcc
Confidence 55666778766655 5776543 45667777777776653
No 12
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.57 E-value=63 Score=26.41 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHhcc
Q 016002 286 PEYRKQLQEMLDGMC 300 (397)
Q Consensus 286 PqyrqQL~~Ml~~mg 300 (397)
+..|......|.+++
T Consensus 64 ~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 64 AWVRRAAADALGQIG 78 (211)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 344444444444444
No 13
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=48.46 E-value=40 Score=32.06 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=37.9
Q ss_pred cccHHHHHHhhc--CHHHHHhhcCCC------------ccccCCHHHHHHHhh----ChHHHHHHHHHHHh
Q 016002 246 FLTVDTLEKLME--DPQVQKMVYPSL------------PEEMRNPASFKLMLQ----NPEYRKQLQEMLDG 298 (397)
Q Consensus 246 ~~~~~~l~~Mm~--nPqmQkM~ypyL------------Pe~MRNP~tfk~Mlq----NPqyrqQL~~Ml~~ 298 (397)
.++.++|+++++ .||.+-++..|| |+.+|+ +.+.+|.. .|+.-+.|++.|.+
T Consensus 60 ~~dp~~La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~-dV~~Ria~l~~v~p~~l~~le~~L~~ 129 (279)
T 3pkr_A 60 KIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKA-EISIRMANLGEISPQVVKRVSTVLEN 129 (279)
T ss_dssp GSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHH-HHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHH-HHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 378899999986 499998887765 666665 55555543 67777777777765
No 14
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=44.89 E-value=14 Score=35.47 Aligned_cols=52 Identities=12% Similarity=0.384 Sum_probs=44.8
Q ss_pred HHHHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhcc
Q 016002 249 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMC 300 (397)
Q Consensus 249 ~~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~mg 300 (397)
+.--..+-+||.-..++-.+||+..||.+--.-+-.||..|+-+.+++.+.+
T Consensus 216 ircYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~~ 267 (268)
T 2fv2_A 216 VRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 267 (268)
T ss_dssp HHHHHHHTTSHHHHHHHHHHSCGGGTSSTTHHHHTSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCHHHHHHHHHhCcHHhhChHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4445678899999999999999999998766677779999999999998875
No 15
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=41.89 E-value=31 Score=28.11 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHHh
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAEL 389 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~ak 389 (397)
+.+.+++. +||++..|. +|+|++--.-+..==..+.++++|+. +...+.+|..+
T Consensus 30 ~~~~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~~ 93 (142)
T 2zs0_B 30 RIWEDLFANMPDARGLFSRVNGNDIDSSEFQAHSLRVLGGLDMCVASLDDVPVLNALLARLNSQ 93 (142)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56888886 899999985 57777666666655566778888866 67788888663
No 16
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=41.75 E-value=30 Score=28.37 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. +|++.+--..+..==..+.++++|++ +...+.+|..
T Consensus 34 ~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 96 (147)
T 2zs0_C 34 AVFASLFSRDAAAQGLFSGVSADNPDSADFRAHCVRVVNGLDVAINMLNDPAVLNEQLAHLSA 96 (147)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHhccccCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56888886 899999994 67777755555544556677788866 5677777765
No 17
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=39.57 E-value=23 Score=34.75 Aligned_cols=40 Identities=38% Similarity=0.514 Sum_probs=27.9
Q ss_pred HHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhh-----ChHHHHHHHH
Q 016002 251 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQ-----NPEYRKQLQE 294 (397)
Q Consensus 251 ~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~Mlq-----NPqyrqQL~~ 294 (397)
.|+-+.++|+||+|=.=+ -+||+.+.-||| ||++.++|.+
T Consensus 236 ~l~~Lr~~pqf~~lR~~v----q~nP~~l~~~lq~l~~~nP~l~~~I~~ 280 (368)
T 1oqy_A 236 PLEFLRDQPQFQNMRQVI----QQNPALLPALLQQLGQENPQLLQQISR 280 (368)
T ss_dssp TTHHHHHSHHHHHHHHST----TTCTTHHHHHHTTTTTTCHHHHHHHHH
T ss_pred hHHHHhcChHHHHHHHHH----HhChHHHHHHHHHHHhhCHHHHHHHHH
Confidence 467888999998764432 257787777765 7777776654
No 18
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=39.15 E-value=1.2e+02 Score=24.64 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=33.9
Q ss_pred HHHHHHhcC-CHHHHhhcC------------CHHHHHHHHHHhhChHHHHHhhcC---HH-HHHHHHHHHH
Q 016002 335 EEVITKMMA-NPEIALGFQ------------SPRVQAAIMECSQNPMNIIKYQND---KE-VMSVITKIAE 388 (397)
Q Consensus 335 EE~mskiMa-DPEI~aamQ------------DPeV~aALqDIssNPaAI~KYqsD---PK-Vm~~IqKL~a 388 (397)
.+.+.+++. +||++..|. +|++.+--.-+..==..+.++++| ++ +...+.+|..
T Consensus 27 ~~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~~~~~l~~~l~~L~~ 97 (150)
T 1x46_A 27 VDILYNFFKSYPASQAKFSAFAGKDLESLKDTAPFALHATRIVSVINEAIALMGVAENRPALKNVLKQQGI 97 (150)
T ss_dssp HHHHHHHHHHCHHHHTTCTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhhHhccCCCHHHHhhChHHHHHHHHHHHHHHHHHHHccCcCcHHHHHHHHHHHHH
Confidence 567888886 788888885 455554333343333445667777 55 5666777755
No 19
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=38.83 E-value=17 Score=28.79 Aligned_cols=11 Identities=55% Similarity=0.652 Sum_probs=7.5
Q ss_pred HHHhhcCHHHH
Q 016002 252 LEKLMEDPQVQ 262 (397)
Q Consensus 252 l~~Mm~nPqmQ 262 (397)
|+-+.++|+|+
T Consensus 6 l~~Lr~~Pqf~ 16 (72)
T 1pve_A 6 LEFLRNQPQFQ 16 (72)
T ss_dssp TGGGTTCTTTT
T ss_pred HHHHHcChHHH
Confidence 46677777766
No 20
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=37.95 E-value=38 Score=27.53 Aligned_cols=53 Identities=9% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. +|++++--..+..==..+.++++|+. +...+.+|..
T Consensus 30 ~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~~~~l~~~l~~L~~ 92 (140)
T 2zs0_A 30 DLFSELFNIQGSSRALFSGVGVDDMNSAAFTAHCLRVTGALNRLISQLDQQATINADLAHLAG 92 (140)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788886 799988884 57777655555554556677777866 6677777765
No 21
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=37.87 E-value=44 Score=25.50 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=3.2
Q ss_pred CHHHHhh
Q 016002 344 NPEIALG 350 (397)
Q Consensus 344 DPEI~aa 350 (397)
||+++..
T Consensus 23 NP~~L~~ 29 (61)
T 2f4m_B 23 NPSLLPA 29 (61)
T ss_dssp CGGGHHH
T ss_pred CHHHHHH
Confidence 5554433
No 22
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=37.38 E-value=40 Score=27.27 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. +|+|.+--.-+..==..+.++++|++ +...+.+|..
T Consensus 30 ~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 92 (140)
T 1x9f_D 30 ELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKV 92 (140)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56888886 899999985 57777655555544556677788876 6677777765
No 23
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=35.23 E-value=59 Score=26.80 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. +|++.+--..+..==..+.++++|++ +...+.+|..
T Consensus 38 ~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 100 (153)
T 1x9f_C 38 LLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAH 100 (153)
T ss_dssp HHHHHHHHHSTTHHHHTGGGTGGGTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHhhhhcCccCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777876 788888884 56666444444433445567777766 5666777755
No 24
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=34.89 E-value=45 Score=27.40 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=37.6
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. +|++.+--.-+..==..+.++++|++ +...+.+|..
T Consensus 34 ~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 96 (149)
T 1yhu_D 34 AVFKDLFANVPDAVGLFGAVKGDEVNSNEFKAHCIRVVNGLDSSIGLLSDPATLNEQLSHLAT 96 (149)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTSSSTTSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56888886 899999984 57777655555554556677778876 5666777765
No 25
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=34.88 E-value=24 Score=28.58 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=38.2
Q ss_pred HHHHHhcC-CHHHHhhcC------------CHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ------------SPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ------------DPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~a 388 (397)
+.+.+++. +||++..|. ||++.+--.-+..==..+.++++|+ +...+.+|..
T Consensus 28 ~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~~-l~~~l~~L~~ 92 (141)
T 1ith_A 28 SIFFKYLTAYPGDLAFFHKFSSVPLYGLRSNPAYKAQTLTVINYLDKVVDALGGN-AGALMKAKVP 92 (141)
T ss_dssp HHHHHHHHHSGGGGGGCTTTTTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTTT-HHHHHHTTHH
T ss_pred HHHHHHHHHChHHHHHhHhhcCCCHHHHhhCHHHHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHH
Confidence 56888886 799999885 5777666666665556667778887 7777777755
No 26
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=34.84 E-value=67 Score=26.34 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHHhcC-CHHHHhhc------------CCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGF------------QSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aam------------QDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~a 388 (397)
+.+.+++. +||++..| .||++.+=-..+..==..+.++++|++ ..+.+|..
T Consensus 24 ~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~--~~l~~L~~ 87 (147)
T 2nrl_A 24 LVLTRLFKEHPETQKLFPKFAGIAQADIAGNAAVSAHGATVLKKLGELLKAKGSHA--AILKPLAN 87 (147)
T ss_dssp HHHHHHHHHCHHHHTTCTTTTTCCGGGTTTCHHHHHHHHHHHHHHHHHHHCSSCHH--HHHHHHHH
T ss_pred HHHHHHHHHCHhHHHHhhhhcCCCHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHH
Confidence 56778886 79988888 456665555555554555677788876 67777755
No 27
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=33.38 E-value=90 Score=25.48 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHhcC-CHHHHhhcC----------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ----------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ----------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. ||++.+--.-+..==..+.++++|+. +...+.+|..
T Consensus 37 ~~y~rlF~~~P~~k~~F~~f~~~~~~~~n~~~~~h~~~v~~al~~~v~~ld~~~~l~~~l~~L~~ 101 (151)
T 1sct_B 37 MLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAV 101 (151)
T ss_dssp HHHHHHHHHCHHHHHHTGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHhCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666665 677777773 45544443344433344556677755 5566666654
No 28
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=32.83 E-value=1.2e+02 Score=30.07 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=55.7
Q ss_pred hhChHHHHHHHHHHHhccCCCCCchhhhhhhcc----CCCChHHHHHHHH-hcCCChHHHHHHhcCCHHHHhhcCCHHHH
Q 016002 283 LQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKN----FDLNSAEVKQQFE-QIGLTPEEVITKMMANPEIALGFQSPRVQ 357 (397)
Q Consensus 283 lqNPqyrqQL~~Ml~~mgg~g~~~~~m~d~L~~----~D~NnpEv~eqf~-q~G~tpEE~mskiMaDPEI~aamQDPeV~ 357 (397)
|.-++|..||+.|. +||.-. .++++|-+ ++.+..++....+ -..||++|+- ||+|. +.-+.+
T Consensus 320 f~~~d~~~ql~~~~-kmg~~~----~~~~~~Pg~~~~~~~~~~~~~~~~~i~~smt~~e~~-----~p~~~---~~sr~~ 386 (425)
T 2ffh_A 320 LSLEDFLKQMQNLK-RLGPFS----EILGLLPGVPQGLKVDEKAIKRLEAIVLSMTPEERK-----DPRIL---NGSRRK 386 (425)
T ss_dssp CCHHHHHHHHHHHH-HTCCCT----TGGGTSCSCSCCTTSCHHHHHHHHHHHHTSCHHHHH-----CGGGC---CHHHHH
T ss_pred cCHHHHHHHHHHhh-CcCChh----hhhccCCCchhhccccHHHHHHHHHHHHcCCHHHhc-----Ccccc---ChHHHH
Confidence 44488999999988 687522 12333322 2233444444433 3568888754 67765 334666
Q ss_pred HHHHHHhhChHHHHHhhcCHHHHHHHHHHHHhCCCCCCC
Q 016002 358 AAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGT 396 (397)
Q Consensus 358 aALqDIssNPaAI~KYqsDPKVm~~IqKL~akFgG~~~~ 396 (397)
-|-.-.-..+..+.+.++.=+-| .|++.+|+|.++.
T Consensus 387 ria~gsg~~~~~v~~ll~~~~~~---~~~~~~~~~~~~~ 422 (425)
T 2ffh_A 387 RIAKGSGTSVQEVNRFIKAFEEM---KALMKSLEKKKGR 422 (425)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH---HHHHHHTTC----
T ss_pred HHHccCCCCHHHHHHHHHHHHHH---HHHHHHhcCCCCC
Confidence 66666666677777666554444 5666677765543
No 29
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=31.50 E-value=51 Score=26.62 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=38.9
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHHh
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAEL 389 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~ak 389 (397)
+.+.+++. +||++..|. ||++.+--..+..==..+.++++|+. +...+.+|..+
T Consensus 32 ~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~ 95 (144)
T 1yhu_B 32 FIWSHVFQHSPAARDMFKRVRGDNIHTPAFRAHATRVLGGLDMCIALLDDEPVLNTQLAHLAKQ 95 (144)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTCSSSHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56778886 899998885 37777665566655566777888876 66777887663
No 30
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=31.48 E-value=77 Score=30.67 Aligned_cols=51 Identities=27% Similarity=0.472 Sum_probs=33.4
Q ss_pred ccHHHHHHhhc--CHHHHHhhcCCC------------ccccCCHHHHHHHhh----ChHHHHHHHHHHHh
Q 016002 247 LTVDTLEKLME--DPQVQKMVYPSL------------PEEMRNPASFKLMLQ----NPEYRKQLQEMLDG 298 (397)
Q Consensus 247 ~~~~~l~~Mm~--nPqmQkM~ypyL------------Pe~MRNP~tfk~Mlq----NPqyrqQL~~Ml~~ 298 (397)
++.++|+.+++ .||.+-++..|| |+.+|+ +++.+|.. +|+.-+.|++.|.+
T Consensus 116 ~dp~~la~~i~~EhPQtiAlILs~L~p~~AA~vL~~Lp~~~r~-ev~~Ria~l~~v~p~~l~~le~~L~~ 184 (329)
T 3hjl_A 116 VDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKK-EVVKRIATLENVNVQYVKELAQILLE 184 (329)
T ss_dssp SCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHH-HHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHhCCHHHHH-HHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 57778888875 599999988876 555554 44444443 56666666665543
No 31
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=31.29 E-value=46 Score=27.56 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHhcC-CHHHHhhcC------------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHHh
Q 016002 336 EVITKMMA-NPEIALGFQ------------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAEL 389 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ------------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~ak 389 (397)
+.+.+++. +||++..|. +|++.+=-..+..==..+.++++|+. +...+.+|..+
T Consensus 30 ~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~ 97 (147)
T 1h97_A 30 GAYHALFTAHPQYISHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKD 97 (147)
T ss_dssp HHHHHHHHHCGGGGGGSGGGTTCCTTTGGGSHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 56788886 788888884 67776655556655566777888876 66888888764
No 32
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=31.03 E-value=58 Score=26.69 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=38.4
Q ss_pred HHHHHhcC-CHHHHhhcC----------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ----------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ----------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. ||++.+=-.-+..==..+.++++|++ +...+.+|..
T Consensus 35 ~~~~rlF~~~P~~k~~F~~~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~l~~ 99 (146)
T 3g46_A 35 ALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAV 99 (146)
T ss_dssp HHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888888 799999885 57776655555555566778888887 6666677655
No 33
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=31.00 E-value=58 Score=26.54 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=38.1
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. ||+|.+--.-+..==..+.++++|++ +...+.+|..
T Consensus 32 ~~y~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 94 (145)
T 1x9f_B 32 AIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQPATLKEELDHLQV 94 (145)
T ss_dssp HHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56888886 899999884 57776655555555556677888877 6677777765
No 34
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=29.89 E-value=61 Score=26.14 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=36.2
Q ss_pred HHHHHhc-CCHHHHhhcC-----CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMM-ANPEIALGFQ-----SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiM-aDPEI~aamQ-----DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++ .+||++..|. ||++++--..+..==..+.++++|++ +...+.+|..
T Consensus 29 ~~y~rlf~~~P~~~~~F~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 88 (147)
T 1jf3_A 29 ECLSKFISAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGV 88 (147)
T ss_dssp HHHHHHHHHCGGGTTTTTCSSTTCHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5788999 6999999996 48888644444443445666777764 3556777765
No 35
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=28.62 E-value=60 Score=26.69 Aligned_cols=54 Identities=15% Similarity=0.362 Sum_probs=38.8
Q ss_pred HHHHHHhcC-CHHHHhhc-----------CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 335 EEVITKMMA-NPEIALGF-----------QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 335 EE~mskiMa-DPEI~aam-----------QDPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
.+.+.+++. +||++..| .||++.+=-..+..==..+.++++|++ +...+.+|..
T Consensus 35 ~~~~~rlF~~~P~~k~~F~~f~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 101 (146)
T 1it2_A 35 LNILLRFLKCFPQAQASFPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQ 101 (146)
T ss_dssp HHHHHHHHHHCGGGGGGCTTTTTCCSCGGGCHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 367888886 89999988 467776665566655566677888876 5667777765
No 36
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=28.08 E-value=52 Score=27.24 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=37.1
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. +|++.+=-..+..==..+.++++||. +...+.+|..
T Consensus 37 ~~~~rlF~~~P~~k~~F~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 99 (151)
T 1x9f_A 37 AVFDDLFKHYPTSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLAD 99 (151)
T ss_dssp HHHHHHHHHCGGGGGGGTTTTTTSTTSSHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888886 899999995 66765555555555555677778855 5667777765
No 37
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=27.90 E-value=59 Score=24.17 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=8.0
Q ss_pred hhhhhccCCCChHHHHH
Q 016002 309 VLDSLKNFDLNSAEVKQ 325 (397)
Q Consensus 309 m~d~L~~~D~NnpEv~e 325 (397)
.+.+|++ ++.+|-++
T Consensus 6 Ll~tlks--p~sp~qqq 20 (47)
T 1zoq_C 6 LLRTLKS--PSSPQQQQ 20 (47)
T ss_dssp HHHTCCS--CCCHHHHH
T ss_pred HHHHhcC--CCCHHHHH
Confidence 3455555 56666444
No 38
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=27.38 E-value=75 Score=26.03 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=38.6
Q ss_pred HHHHHhcC-CHHHHhhcC--------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ--------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. ||++.+--.-+..==..+.++++|+. +...+.+|..
T Consensus 35 ~~y~rlF~~~P~~k~~F~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 97 (148)
T 1yhu_C 35 EVFAALFKMVPAAKNLFTRVNVADINSPEFQGHVVRVMGGLDILINALDDIPTLESMLDHLAG 97 (148)
T ss_dssp HHHHHHHHHCGGGGGGSGGGTGGGTTSHHHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56888886 899999884 67776666666655666777888866 5677777765
No 39
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=26.98 E-value=1.2e+02 Score=25.03 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHhcC-CHHHHhhc----------CCHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGF----------QSPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aam----------QDPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..| ++|++++=-..+..==..+.++++|++ +...+.+|..
T Consensus 38 ~~y~rlF~~~P~~k~~F~~f~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 102 (152)
T 4hrt_B 38 MLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAV 102 (152)
T ss_dssp HHHHHHHHHCTHHHHHTGGGCCCC---CCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHhHHHhhHHhCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45777776 68877776 456533322222222233445566655 4455666644
No 40
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=26.94 E-value=32 Score=27.78 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.4
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHHHH
Q 016002 99 GSPLFWVGVGVGLSALFSFVASRLKQ 124 (397)
Q Consensus 99 gspl~wigvgvglsa~fs~~a~~~k~ 124 (397)
..++++|+-|+|+..++|++-..+++
T Consensus 17 ~~~~vlIagG~GItP~~s~l~~l~~~ 42 (186)
T 3a1f_A 17 YEVVMLVGAGIGVTPFASILKSVWYK 42 (186)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHHHHHHHHH
Confidence 46899999999999999987655543
No 41
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=26.83 E-value=56 Score=27.10 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=36.5
Q ss_pred HHHHHhcC-CHHHHhhcC------------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHHh
Q 016002 336 EVITKMMA-NPEIALGFQ------------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAEL 389 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ------------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~ak 389 (397)
+.+.+++. +||++..|. +|+|.+==..+..==..+.++++|+. +...+.+|..+
T Consensus 31 ~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~ 98 (148)
T 2vyw_A 31 SIYKTLFAAHPEYISYFSKLQGLTKDNVGQSEGIRYYGRTLGEELIRLLKAASNPSVLEERIVQGAKD 98 (148)
T ss_dssp HHHHHHHHHCGGGGGGSGGGTTCCTTTGGGCSHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHhhhhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778886 788888873 45555554455544455677888877 67788888663
No 42
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=26.54 E-value=31 Score=26.32 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=18.9
Q ss_pred HHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhc
Q 016002 252 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGM 299 (397)
Q Consensus 252 l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~m 299 (397)
++-+.++|+|+ +.=+..-+||+. |..+|.+.
T Consensus 4 l~~Lr~~Pqf~--------------~lR~~vq~NP~~---L~~lLqql 34 (61)
T 2f4m_B 4 LEFLRNQPQFQ--------------QMRQIIQQNPSL---LPALLQQI 34 (61)
T ss_dssp GGGGTTCHHHH--------------HHHHHHHHCGGG---HHHHHHHH
T ss_pred HHHHHcChHHH--------------HHHHHHHHCHHH---HHHHHHHH
Confidence 45677788877 344455566666 55555554
No 43
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=26.41 E-value=84 Score=26.53 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHhhc-CCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHH
Q 016002 336 EVITKMMANPEIALGF-QSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKI 386 (397)
Q Consensus 336 E~mskiMaDPEI~aam-QDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL 386 (397)
+.++-+=.|.|.+.++ +++-|..++..|..+|..+.+|+.+...-..|+..
T Consensus 15 df~~~l~~n~~a~~~y~~~~~~k~~i~~irr~p~~we~~~~~~~lV~~vn~~ 66 (109)
T 3l4h_A 15 EFFTVLHANYSAYRVFTSSTCLKHMILKVRRDARNFERYQHNRDLVNFINMF 66 (109)
T ss_dssp THHHHHHTSHHHHHHHHHCSHHHHHHHHHHHCTHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHhcchHHHHHHHHHhcCCcChhhhcCcCCceEEeccC
Confidence 4566677788887777 79999999999999999999999999887666654
No 44
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=26.05 E-value=28 Score=28.08 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHhhcC
Q 016002 336 EVITKMMANPEIALGFQ 352 (397)
Q Consensus 336 E~mskiMaDPEI~aamQ 352 (397)
+.++++++||+|++.++
T Consensus 23 ~~~~~vl~dP~V~~Fl~ 39 (106)
T 2k7r_A 23 QMKEKVMKDQDVQAFLK 39 (106)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHH
Confidence 45677777777766553
No 45
>1b0b_A Hemoglobin; hemoprotein, sulfide carrier, globins, oxygen transport, oxygen storage/transport complex; HET: HEM; 1.43A {Lucina pectinata} SCOP: a.1.1.2 PDB: 1ebt_A* 1flp_A* 1moh_A*
Probab=25.99 E-value=1.5e+02 Score=23.76 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=31.2
Q ss_pred HHHHHhcC-CHHHHhhcCC-------------HHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQS-------------PRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQD-------------PeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|.. |++.+--.-+..==..+.++++|+. +...+.+|..
T Consensus 27 ~~~~rlF~~~P~~~~~F~~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 94 (142)
T 1b0b_A 27 EFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAA 94 (142)
T ss_dssp HHHHHHHHHCHHHHHTTTTTTTTCCGGGCTTSHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHhHHhhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 56777775 7888888743 4444433333333344455666755 5666777754
No 46
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=25.63 E-value=34 Score=27.00 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=5.9
Q ss_pred HhcCCHHHHhhc
Q 016002 340 KMMANPEIALGF 351 (397)
Q Consensus 340 kiMaDPEI~aam 351 (397)
-+-+||+++..+
T Consensus 21 ~vqqNP~lL~~l 32 (72)
T 1pve_A 21 IIQQNPSLLPAL 32 (72)
T ss_dssp HHTTCGGGHHHH
T ss_pred HHHHCHHHHHHH
Confidence 344466655443
No 47
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.64A {Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A* 3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Probab=25.63 E-value=86 Score=25.91 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHhcC-CHHHHhhcC------------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ------------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ------------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. +|++.+--..|..==..+.++++|++ +...+.+|..
T Consensus 30 ~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~ah~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 96 (152)
T 1x3k_A 30 TVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKNVGNDKGFQKVIADMSG 96 (152)
T ss_dssp HHHHHHHHHSGGGGGGSTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhHHHHhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56777775 788888885 56666655555544445667777765 5566777765
No 48
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=25.10 E-value=63 Score=25.97 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=13.6
Q ss_pred HHhhcCCHHHHHHHHH
Q 016002 347 IALGFQSPRVQAAIME 362 (397)
Q Consensus 347 I~aamQDPeV~aALqD 362 (397)
+.++|+||+|++.|++
T Consensus 25 ~~~vl~dP~V~~Fl~~ 40 (106)
T 2k7r_A 25 KEKVMKDQDVQAFLKE 40 (106)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHH
Confidence 6788999999998764
No 49
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=25.05 E-value=65 Score=26.07 Aligned_cols=53 Identities=11% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHhcC-CHHHHhhc------------CCHHHHHHHHHHhhChHHHHHhhcCH-HHHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGF------------QSPRVQAAIMECSQNPMNIIKYQNDK-EVMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aam------------QDPeV~aALqDIssNPaAI~KYqsDP-KVm~~IqKL~a 388 (397)
+.+.+++. +||++..| ++|++.+--..+..==..+.++++|+ .+...+.+|..
T Consensus 28 ~~~~rlF~~~P~~k~~F~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~ 94 (147)
T 1mba_A 28 DFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAANAGKMSAMLSQFAK 94 (147)
T ss_dssp HHHHHHHHHCGGGGGGCTTTTTCCHHHHHTCTTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHhhHhhcCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56777776 78888888 34555553333333333455666674 44556666654
No 50
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=24.86 E-value=86 Score=25.65 Aligned_cols=53 Identities=13% Similarity=0.291 Sum_probs=33.5
Q ss_pred HHHHHhcC-CHHHHhhcC----------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ----------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ----------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. ||++.+--..+..==..+.++++||+ +...+.+|..
T Consensus 36 ~~~~rlF~~~P~~k~~F~~~~d~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~ 100 (150)
T 1sct_A 36 MLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCVVEKFAV 100 (150)
T ss_dssp HHHHHHHHHCGGGGGGGCTTCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777776 788888884 45555444444444455566777765 5566677654
No 51
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=22.77 E-value=2.9e+02 Score=21.96 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=36.3
Q ss_pred ccHHHHHHhh-cCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhcc
Q 016002 247 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMC 300 (397)
Q Consensus 247 ~~~~~l~~Mm-~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~mg 300 (397)
+..+.+..|+ .+|++++ |.|..|||-..-+.++.||+++.+-..++..++
T Consensus 23 ~g~~~y~~lf~~~P~~~~----~F~~~~~~~~~~~~~~~~~~~~~h~~~v~~~l~ 73 (151)
T 1q1f_A 23 HGTVLFARLFALEPSLLP----LFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVID 73 (151)
T ss_dssp HHHHHHHHHHHHCGGGGG----GCCBTTBCCSSHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHChHHHH----hCCccccccccHHHHhhChHHHHHHHHHHHHHH
Confidence 5567788888 8899994 666556665555778999999999666655443
No 52
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=22.77 E-value=37 Score=29.00 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=20.9
Q ss_pred CCCcchhhhhhhhhHHHHHHHHHHH
Q 016002 98 VGSPLFWVGVGVGLSALFSFVASRL 122 (397)
Q Consensus 98 igspl~wigvgvglsa~fs~~a~~~ 122 (397)
-..++++||-|+|+..+.+++...+
T Consensus 113 ~~~~~vliagGtGitp~~~~l~~l~ 137 (243)
T 4eh1_A 113 RERPVVLISAGVGATPMQAILHTLA 137 (243)
T ss_dssp CSSCEEEEEEGGGHHHHHHHHHHHH
T ss_pred CCCCEEEEEccccHHHHHHHHHHHH
Confidence 3679999999999999999875543
No 53
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=22.72 E-value=43 Score=25.51 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=20.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016002 105 VGVGVGLSALFSFVASRLKQYAMQQAL 131 (397)
Q Consensus 105 igvgvglsa~fs~~a~~~k~yamqqa~ 131 (397)
-||-||||..|.-|-..+-|..+..|+
T Consensus 32 ggvtvglsgvftavkaaiakqgikkai 58 (60)
T 2kjf_A 32 GGVTVGLSGVFTAVKAAIAKQGIKKAI 58 (60)
T ss_dssp CSSCTTTHHHHHHHHHHHHHTCHHHHH
T ss_pred cCceechhhHHHHHHHHHHHHhHHHHh
Confidence 378999999999887777666555443
No 54
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=22.57 E-value=1.1e+02 Score=25.24 Aligned_cols=51 Identities=27% Similarity=0.354 Sum_probs=26.2
Q ss_pred HHHHHhcC-CHHHHhhcC-------------CHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ-------------SPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ-------------DPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~a 388 (397)
+.+.+++. +||++..|. ||++.+=-..+..==..+.++++|++ ..+.+|..
T Consensus 27 ~~~~rlF~~~P~~k~~F~~f~~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~--~~l~~L~~ 91 (153)
T 1lhs_A 27 EVIIRLFQLHPETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRILKQKNNHE--QELKPLAE 91 (153)
T ss_dssp HHHHHHHHHCHHHHTTCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHH
T ss_pred HHHHHHHHHChhHHHHhHhhcCCCcHHHHcCCHHHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHH
Confidence 45666665 677777663 33333322222222233455666665 55666644
No 55
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=21.40 E-value=80 Score=25.85 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHhc-CCHHHHhhcCC------------HHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 016002 335 EEVITKMM-ANPEIALGFQS------------PRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 388 (397)
Q Consensus 335 EE~mskiM-aDPEI~aamQD------------PeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~a 388 (397)
.+.+.+++ .+||++..|.. |++..--..+..==..+.++++|..+...+.+|..
T Consensus 37 ~~~y~rlf~~~P~~~~~F~~~~d~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~l~~~l~~L~~ 103 (159)
T 1hlm_A 37 ADVFIRIFHNDPTAQRKFPQMAGLSPAELRTSRQMHAHAIRVSALMTTYIDEMDTEVLPELLATLTR 103 (159)
T ss_dssp HHHHHHHTTTCSTTTTSSTTTTTSCSTTCSCCHHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHhcccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 36788888 58999998843 66665444444444455566666667777777754
No 56
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=21.29 E-value=1.2e+02 Score=24.79 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHHHHhcC-CHHHHhhcC-------------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ-------------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ-------------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. +|++.+--..+..==..+.++++|++ +...+.+|..
T Consensus 36 ~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~ 103 (149)
T 2lhb_A 36 DILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSG 103 (149)
T ss_dssp HHHHHHHHHCGGGGGGCGGGTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHhHHHHhhhhcCCCCHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56777775 788888873 45554443334433344566777766 5566666654
No 57
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=20.85 E-value=1.2e+02 Score=24.83 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=26.5
Q ss_pred HHHHHhcC-CHHHHhhcC-------------CHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ-------------SPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ-------------DPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~a 388 (397)
+.+.+++. +||++..|. +|++.+=-..+..==..+.++++|++ ..+.+|..
T Consensus 27 ~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~~~--~~l~~L~~ 91 (151)
T 1a6m_A 27 DILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHE--AELKPLAQ 91 (151)
T ss_dssp HHHHHHHHHCHHHHTTCTTTTTCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHH
T ss_pred HHHHHHHHHChhHHHHhHhhcCCCcHHHhcCCHHHHHHHHHHHHHHHHHHHccCCHH--HHHHHHHH
Confidence 45666665 677777663 33433322223322334455566665 56666644
No 58
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=20.79 E-value=1.1e+02 Score=26.41 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=30.7
Q ss_pred HHHHHhcC-CHHHHhhcC-------------CHHHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ-------------SPRVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ-------------DPeV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
+.+.+++. +||++..|. ||++.+--.-+..==..+.++++|++ +...+.+|..
T Consensus 47 ~~y~rlF~~~P~~k~~F~~f~d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~Ldd~~~l~~~l~~L~~ 114 (193)
T 2dc3_A 47 AILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGK 114 (193)
T ss_dssp HHHHHHHHHCGGGGGGCTTTTTCCCHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHhccCCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56777775 788777773 34444333333333344566677765 5566666654
No 59
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=20.75 E-value=66 Score=30.63 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=14.1
Q ss_pred HHhhcCHHHHHHHHHHHH
Q 016002 371 IKYQNDKEVMSVITKIAE 388 (397)
Q Consensus 371 ~KYqsDPKVm~~IqKL~a 388 (397)
.+..+||.|.+.|..|+.
T Consensus 159 ~~~tdDp~vkd~L~fLi~ 176 (266)
T 1o9i_A 159 YSMTEDEGVRDMLKFLLA 176 (266)
T ss_dssp HTTCCCHHHHHHHHHHHH
T ss_pred HHhcCChhHHHHHHHHHH
Confidence 344579999999998865
No 60
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=20.58 E-value=44 Score=26.61 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=28.4
Q ss_pred HHHHHhcC-CHHHHhhcC--CH-------HHHHHHHHHhhChHHHHHhhcCHH-HHHHHHHHHH
Q 016002 336 EVITKMMA-NPEIALGFQ--SP-------RVQAAIMECSQNPMNIIKYQNDKE-VMSVITKIAE 388 (397)
Q Consensus 336 E~mskiMa-DPEI~aamQ--DP-------eV~aALqDIssNPaAI~KYqsDPK-Vm~~IqKL~a 388 (397)
..+.+++. |||++..|. |. .++.+|.. +.++++|+. +...+.+|..
T Consensus 26 ~fy~rlf~~~P~~~~~F~~~~~~~~~q~~~~~~~l~~-------~v~~ld~~~~l~~~l~~l~~ 82 (140)
T 2wy4_A 26 EFYKIMFNDYPEVKPMFNMEKQISGEQPKALAMAILM-------AAKNIENLENMRSFVDKVAI 82 (140)
T ss_dssp HHHHHHHHHCGGGGGGSCHHHHHTSHHHHHHHHHHHH-------HHHTTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHhcCcCcccHHHHHHHHHHHHHH-------HHHhccCHHHHHHHHHHHHH
Confidence 67889996 999999996 32 23333333 334455544 5566666654
Done!