Query 016003
Match_columns 397
No_of_seqs 153 out of 1316
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 5.4E-31 1.2E-35 263.7 23.3 287 3-393 61-362 (381)
2 COG3448 CBS-domain-containing 99.7 2.1E-17 4.6E-22 155.4 11.3 208 106-392 151-374 (382)
3 COG2524 Predicted transcriptio 99.7 9E-17 1.9E-21 148.8 11.9 127 181-391 166-292 (294)
4 COG2524 Predicted transcriptio 99.7 6.1E-16 1.3E-20 143.3 12.0 121 6-175 170-291 (294)
5 cd04618 CBS_pair_5 The CBS dom 99.6 6.8E-15 1.5E-19 119.8 11.4 94 198-387 2-97 (98)
6 cd04641 CBS_pair_28 The CBS do 99.6 3E-14 6.6E-19 119.2 13.0 120 197-388 1-120 (120)
7 PRK14869 putative manganese-de 99.6 1.7E-14 3.6E-19 152.2 11.8 201 8-245 68-301 (546)
8 cd04603 CBS_pair_KefB_assoc Th 99.5 1E-13 2.3E-18 114.5 12.6 109 198-387 2-110 (111)
9 cd04614 CBS_pair_1 The CBS dom 99.5 9.5E-14 2.1E-18 112.4 11.6 95 198-388 2-96 (96)
10 cd04619 CBS_pair_6 The CBS dom 99.5 3.1E-13 6.6E-18 112.2 12.5 111 199-387 3-113 (114)
11 COG3620 Predicted transcriptio 99.5 1.9E-13 4.1E-18 118.4 11.0 120 9-176 66-185 (187)
12 cd04642 CBS_pair_29 The CBS do 99.5 4E-13 8.6E-18 113.5 12.3 124 198-387 2-125 (126)
13 COG2905 Predicted signal-trans 99.5 1.6E-13 3.4E-18 139.6 10.3 118 194-391 154-271 (610)
14 PRK10892 D-arabinose 5-phospha 99.5 4.1E-13 8.9E-18 132.7 13.0 119 188-388 203-323 (326)
15 PRK11543 gutQ D-arabinose 5-ph 99.5 6.3E-13 1.4E-17 130.9 13.3 121 186-388 196-318 (321)
16 cd04617 CBS_pair_4 The CBS dom 99.4 1.2E-12 2.5E-17 109.3 12.3 111 198-387 2-117 (118)
17 cd04630 CBS_pair_17 The CBS do 99.4 1.4E-12 3.1E-17 107.8 12.4 112 198-388 2-114 (114)
18 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.2E-12 2.7E-17 109.5 12.1 123 197-388 2-124 (124)
19 COG3448 CBS-domain-containing 99.4 4.5E-13 9.7E-18 126.5 10.1 131 6-177 243-374 (382)
20 cd04608 CBS_pair_PALP_assoc Th 99.4 2.8E-13 6.1E-18 114.8 7.5 114 197-389 2-124 (124)
21 cd04627 CBS_pair_14 The CBS do 99.4 2.2E-12 4.8E-17 108.3 11.8 118 198-385 2-120 (123)
22 cd04631 CBS_pair_18 The CBS do 99.4 2.3E-12 5.1E-17 107.9 11.8 124 197-388 1-125 (125)
23 cd04596 CBS_pair_DRTGG_assoc T 99.4 3.6E-12 7.9E-17 104.4 12.1 106 197-387 2-107 (108)
24 PRK07807 inosine 5-monophospha 99.4 2.4E-12 5.2E-17 132.9 13.6 113 194-391 94-206 (479)
25 cd04605 CBS_pair_MET2_assoc Th 99.4 8E-12 1.7E-16 102.3 13.4 108 197-387 2-109 (110)
26 cd04618 CBS_pair_5 The CBS dom 99.4 3.4E-12 7.3E-17 103.9 10.9 96 19-173 2-98 (98)
27 cd04632 CBS_pair_19 The CBS do 99.4 3.6E-12 7.8E-17 107.6 11.4 125 198-388 2-128 (128)
28 cd04593 CBS_pair_EriC_assoc_ba 99.4 4.9E-12 1.1E-16 104.7 12.0 112 198-388 2-115 (115)
29 COG3620 Predicted transcriptio 99.4 1.5E-12 3.2E-17 112.9 8.6 137 166-391 49-185 (187)
30 cd04590 CBS_pair_CorC_HlyC_ass 99.4 7.9E-12 1.7E-16 102.5 12.7 108 198-387 2-110 (111)
31 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 7.5E-12 1.6E-16 101.7 12.4 104 198-387 2-105 (106)
32 cd04621 CBS_pair_8 The CBS dom 99.4 6.8E-12 1.5E-16 108.0 12.6 134 198-388 2-135 (135)
33 cd04803 CBS_pair_15 The CBS do 99.4 7.4E-12 1.6E-16 104.4 12.3 121 198-388 2-122 (122)
34 cd04623 CBS_pair_10 The CBS do 99.4 1E-11 2.2E-16 101.7 12.9 111 198-387 2-112 (113)
35 cd04607 CBS_pair_NTP_transfera 99.4 1.3E-11 2.7E-16 101.9 13.2 109 199-387 4-112 (113)
36 cd04639 CBS_pair_26 The CBS do 99.4 9E-12 1.9E-16 102.2 12.1 109 198-387 2-110 (111)
37 cd04801 CBS_pair_M50_like This 99.4 5.1E-12 1.1E-16 104.4 10.6 110 197-387 1-113 (114)
38 cd04643 CBS_pair_30 The CBS do 99.4 8.3E-12 1.8E-16 103.1 11.9 115 198-388 2-116 (116)
39 cd04626 CBS_pair_13 The CBS do 99.4 1.1E-11 2.3E-16 101.8 12.1 109 198-387 2-110 (111)
40 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 1.4E-11 3.1E-16 100.3 12.7 106 198-387 3-108 (109)
41 cd04635 CBS_pair_22 The CBS do 99.3 1.1E-11 2.5E-16 103.3 11.8 122 197-388 1-122 (122)
42 cd04641 CBS_pair_28 The CBS do 99.3 1.4E-11 3E-16 103.0 12.2 116 19-173 2-120 (120)
43 cd04586 CBS_pair_BON_assoc Thi 99.3 8.6E-12 1.9E-16 106.6 11.1 134 197-388 2-135 (135)
44 PRK01862 putative voltage-gate 99.3 7.8E-12 1.7E-16 132.7 12.6 126 186-392 446-573 (574)
45 cd04615 CBS_pair_2 The CBS dom 99.3 1.8E-11 3.9E-16 100.7 12.0 109 199-387 3-112 (113)
46 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 1.7E-11 3.8E-16 100.6 11.9 112 198-388 3-114 (114)
47 cd04640 CBS_pair_27 The CBS do 99.3 1.2E-11 2.6E-16 104.5 11.2 117 198-387 2-125 (126)
48 cd04629 CBS_pair_16 The CBS do 99.3 1.1E-11 2.5E-16 101.9 10.8 113 198-388 2-114 (114)
49 cd04624 CBS_pair_11 The CBS do 99.3 3.6E-11 7.8E-16 98.7 13.5 110 198-387 2-111 (112)
50 cd04601 CBS_pair_IMPDH This cd 99.3 1.9E-11 4.2E-16 99.7 11.7 107 197-387 2-109 (110)
51 cd04620 CBS_pair_7 The CBS dom 99.3 2.4E-11 5.1E-16 100.4 12.3 111 198-388 2-115 (115)
52 cd04627 CBS_pair_14 The CBS do 99.3 1.7E-11 3.7E-16 102.9 11.5 116 107-244 2-121 (123)
53 cd04588 CBS_pair_CAP-ED_DUF294 99.3 3.9E-11 8.5E-16 98.2 13.2 109 197-387 1-109 (110)
54 cd04585 CBS_pair_ACT_assoc2 Th 99.3 2.6E-11 5.6E-16 100.5 11.9 121 198-388 2-122 (122)
55 cd04606 CBS_pair_Mg_transporte 99.3 2.1E-11 4.5E-16 100.0 11.1 104 201-389 1-109 (109)
56 cd04587 CBS_pair_CAP-ED_DUF294 99.3 2.1E-11 4.4E-16 100.2 10.9 111 198-387 2-112 (113)
57 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 2.9E-11 6.2E-16 99.2 11.8 112 197-387 1-113 (114)
58 PRK15094 magnesium/cobalt effl 99.3 2.2E-11 4.8E-16 118.7 12.8 126 184-393 64-192 (292)
59 COG0517 FOG: CBS domain [Gener 99.3 4.5E-11 9.7E-16 98.6 12.8 112 194-386 4-117 (117)
60 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 3.4E-11 7.4E-16 98.4 11.8 111 197-388 1-111 (111)
61 cd04800 CBS_pair_CAP-ED_DUF294 99.3 4.3E-11 9.2E-16 98.1 12.2 110 197-387 1-110 (111)
62 PRK07107 inosine 5-monophospha 99.3 1.8E-11 3.9E-16 127.2 12.3 107 200-389 108-219 (502)
63 cd04610 CBS_pair_ParBc_assoc T 99.3 4.7E-11 1E-15 97.1 12.3 106 197-388 2-107 (107)
64 cd04636 CBS_pair_23 The CBS do 99.3 3.9E-11 8.4E-16 102.1 12.2 131 198-388 2-132 (132)
65 PLN02274 inosine-5'-monophosph 99.3 2.8E-11 6.1E-16 125.9 13.5 113 195-391 106-223 (505)
66 TIGR00400 mgtE Mg2+ transporte 99.3 4E-11 8.7E-16 123.6 14.5 123 184-393 128-255 (449)
67 cd04595 CBS_pair_DHH_polyA_Pol 99.3 6.7E-11 1.4E-15 96.9 12.9 108 197-387 2-109 (110)
68 cd04602 CBS_pair_IMPDH_2 This 99.3 3.9E-11 8.5E-16 99.3 11.5 106 198-387 3-113 (114)
69 cd04637 CBS_pair_24 The CBS do 99.3 6E-11 1.3E-15 99.0 12.3 121 198-388 2-122 (122)
70 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 7.4E-11 1.6E-15 96.4 12.5 109 198-387 2-110 (111)
71 cd04622 CBS_pair_9 The CBS dom 99.3 5.7E-11 1.2E-15 97.5 11.9 111 197-387 1-112 (113)
72 cd04633 CBS_pair_20 The CBS do 99.3 4.8E-11 1E-15 99.4 11.2 120 198-388 2-121 (121)
73 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 4.4E-11 9.6E-16 123.5 13.1 112 194-391 93-204 (475)
74 TIGR01302 IMP_dehydrog inosine 99.3 7.4E-11 1.6E-15 121.6 14.8 113 194-390 85-201 (450)
75 PRK10892 D-arabinose 5-phospha 99.3 7.4E-11 1.6E-15 116.6 14.1 123 6-173 200-323 (326)
76 cd04599 CBS_pair_GGDEF_assoc2 99.3 9.5E-11 2.1E-15 94.9 12.2 103 198-387 2-104 (105)
77 cd04603 CBS_pair_KefB_assoc Th 99.2 7.1E-11 1.5E-15 97.5 11.4 109 19-173 2-111 (111)
78 cd04608 CBS_pair_PALP_assoc Th 99.2 4.8E-11 1E-15 101.1 10.5 123 18-174 2-124 (124)
79 TIGR03520 GldE gliding motilit 99.2 2.1E-10 4.6E-15 116.8 16.7 161 3-215 186-348 (408)
80 cd04802 CBS_pair_3 The CBS dom 99.2 1.4E-10 3.1E-15 95.1 12.6 111 197-387 1-111 (112)
81 PRK14869 putative manganese-de 99.2 2.5E-10 5.5E-15 120.5 17.8 197 93-390 67-304 (546)
82 cd04625 CBS_pair_12 The CBS do 99.2 1.4E-10 3.1E-15 95.1 12.6 111 198-388 2-112 (112)
83 PRK05567 inosine 5'-monophosph 99.2 7.7E-11 1.7E-15 122.6 13.4 113 194-390 92-205 (486)
84 cd04594 CBS_pair_EriC_assoc_ar 99.2 1E-10 2.3E-15 95.2 11.3 100 200-387 4-103 (104)
85 TIGR03520 GldE gliding motilit 99.2 1.3E-10 2.8E-15 118.3 13.3 123 185-393 189-314 (408)
86 cd04589 CBS_pair_CAP-ED_DUF294 99.2 2.4E-10 5.3E-15 93.7 12.5 109 198-387 2-110 (111)
87 cd04617 CBS_pair_4 The CBS dom 99.2 2.8E-10 6E-15 94.9 12.9 110 107-245 2-117 (118)
88 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.9E-10 4.2E-15 93.6 11.5 109 198-388 2-110 (110)
89 cd04630 CBS_pair_17 The CBS do 99.2 3.3E-10 7.3E-15 93.6 13.1 112 18-172 1-113 (114)
90 cd04619 CBS_pair_6 The CBS dom 99.2 3.2E-10 6.9E-15 93.9 12.8 111 19-172 2-113 (114)
91 PRK11543 gutQ D-arabinose 5-ph 99.2 2.1E-10 4.6E-15 113.0 13.3 121 7-172 196-317 (321)
92 PTZ00314 inosine-5'-monophosph 99.2 1.4E-10 3E-15 120.7 12.3 113 194-390 101-218 (495)
93 cd02205 CBS_pair The CBS domai 99.2 4.1E-10 9E-15 90.9 12.6 111 198-387 2-112 (113)
94 cd04642 CBS_pair_29 The CBS do 99.2 1.7E-10 3.7E-15 97.3 10.5 114 108-245 3-125 (126)
95 cd04634 CBS_pair_21 The CBS do 99.2 3.3E-10 7.2E-15 98.1 12.6 142 197-387 1-142 (143)
96 PRK07807 inosine 5-monophospha 99.2 3.7E-10 8E-15 116.8 14.9 121 5-177 86-207 (479)
97 cd04632 CBS_pair_19 The CBS do 99.2 4.2E-10 9E-15 94.9 12.6 119 19-173 2-128 (128)
98 PRK15094 magnesium/cobalt effl 99.2 8.4E-10 1.8E-14 107.6 15.6 163 4-215 63-227 (292)
99 TIGR00393 kpsF KpsF/GutQ famil 99.2 2.1E-10 4.6E-15 110.0 11.3 108 194-381 160-268 (268)
100 cd04591 CBS_pair_EriC_assoc_eu 99.2 3.3E-10 7.2E-15 93.0 10.9 100 198-388 3-105 (105)
101 cd04643 CBS_pair_30 The CBS do 99.2 4.4E-10 9.6E-15 92.6 11.6 115 19-173 2-116 (116)
102 cd04623 CBS_pair_10 The CBS do 99.1 7E-10 1.5E-14 90.7 12.5 111 19-173 2-113 (113)
103 cd04636 CBS_pair_23 The CBS do 99.1 5.6E-10 1.2E-14 94.9 12.3 116 19-173 2-132 (132)
104 cd04593 CBS_pair_EriC_assoc_ba 99.1 8.9E-10 1.9E-14 91.0 13.0 113 18-172 1-114 (115)
105 cd04584 CBS_pair_ACT_assoc Thi 99.1 5.8E-10 1.3E-14 92.6 11.7 120 198-388 2-121 (121)
106 cd04600 CBS_pair_HPP_assoc Thi 99.1 9.1E-10 2E-14 92.0 12.7 117 18-172 2-123 (124)
107 PF00571 CBS: CBS domain CBS d 99.1 2.2E-10 4.9E-15 83.4 7.7 54 337-390 3-56 (57)
108 cd04801 CBS_pair_M50_like This 99.1 9.2E-10 2E-14 90.8 12.3 107 108-245 3-113 (114)
109 KOG1764 5'-AMP-activated prote 99.1 1.7E-09 3.8E-14 108.9 16.6 193 17-267 161-359 (381)
110 COG4109 Predicted transcriptio 99.1 4.2E-10 9.1E-15 108.9 11.4 114 194-392 193-308 (432)
111 cd04631 CBS_pair_18 The CBS do 99.1 8.8E-10 1.9E-14 92.2 12.2 118 19-173 2-125 (125)
112 TIGR00400 mgtE Mg2+ transporte 99.1 1.3E-10 2.9E-15 119.7 8.6 176 93-395 130-311 (449)
113 cd04598 CBS_pair_GGDEF_assoc T 99.1 4.8E-10 1E-14 93.0 10.3 113 198-387 2-118 (119)
114 cd04607 CBS_pair_NTP_transfera 99.1 1.3E-09 2.9E-14 89.7 12.8 107 20-171 4-111 (113)
115 COG2905 Predicted signal-trans 99.1 3.1E-10 6.7E-15 115.8 10.7 124 7-177 148-272 (610)
116 cd04614 CBS_pair_1 The CBS dom 99.1 6.6E-10 1.4E-14 89.7 10.6 93 19-172 2-95 (96)
117 PRK01862 putative voltage-gate 99.1 7.7E-10 1.7E-14 117.5 13.9 129 4-176 443-572 (574)
118 cd04638 CBS_pair_25 The CBS do 99.1 1.2E-09 2.6E-14 88.9 11.9 104 198-387 2-105 (106)
119 cd04629 CBS_pair_16 The CBS do 99.1 8.1E-10 1.8E-14 90.8 10.7 113 18-173 1-114 (114)
120 cd04589 CBS_pair_CAP-ED_DUF294 99.1 2.3E-09 4.9E-14 87.9 13.0 109 19-173 2-111 (111)
121 cd04639 CBS_pair_26 The CBS do 99.1 1.3E-09 2.9E-14 89.2 11.4 109 19-173 2-111 (111)
122 COG0517 FOG: CBS domain [Gener 99.1 1.8E-09 4E-14 88.9 11.9 106 107-243 8-116 (117)
123 cd04613 CBS_pair_SpoIVFB_EriC_ 99.1 1.8E-09 3.9E-14 88.4 11.7 111 18-172 1-113 (114)
124 TIGR01137 cysta_beta cystathio 99.1 1E-09 2.2E-14 113.3 12.5 120 186-389 334-453 (454)
125 cd04621 CBS_pair_8 The CBS dom 99.1 2.3E-09 4.9E-14 92.2 12.6 115 19-172 2-134 (135)
126 cd04590 CBS_pair_CorC_HlyC_ass 99.1 3.7E-09 8.1E-14 86.5 13.2 108 19-172 2-110 (111)
127 TIGR01303 IMP_DH_rel_1 IMP deh 99.1 3.5E-09 7.5E-14 109.5 15.9 120 5-177 85-205 (475)
128 cd04588 CBS_pair_CAP-ED_DUF294 99.1 4.3E-09 9.3E-14 86.0 13.5 108 18-172 1-109 (110)
129 PRK05567 inosine 5'-monophosph 99.1 3.3E-09 7.1E-14 110.5 15.8 168 9-238 88-257 (486)
130 cd04624 CBS_pair_11 The CBS do 99.1 3.3E-09 7.3E-14 86.9 12.8 109 19-172 2-111 (112)
131 cd04615 CBS_pair_2 The CBS dom 99.1 1.9E-09 4.1E-14 88.5 11.2 108 108-244 3-111 (113)
132 cd04803 CBS_pair_15 The CBS do 99.1 2E-09 4.3E-14 89.6 11.3 113 107-244 2-120 (122)
133 cd04587 CBS_pair_CAP-ED_DUF294 99.0 2.6E-09 5.5E-14 87.6 11.7 109 107-244 2-111 (113)
134 cd04800 CBS_pair_CAP-ED_DUF294 99.0 4E-09 8.6E-14 86.3 12.7 109 18-172 1-110 (111)
135 cd04626 CBS_pair_13 The CBS do 99.0 3E-09 6.5E-14 87.2 12.0 108 19-172 2-110 (111)
136 cd04586 CBS_pair_BON_assoc Thi 99.0 1.8E-09 3.9E-14 92.1 11.0 116 18-172 2-134 (135)
137 cd04605 CBS_pair_MET2_assoc Th 99.0 5.7E-09 1.2E-13 85.2 13.5 107 18-172 2-109 (110)
138 cd04609 CBS_pair_PALP_assoc2 T 99.0 2.9E-09 6.4E-14 86.6 11.6 109 19-173 2-110 (110)
139 cd04582 CBS_pair_ABC_OpuCA_ass 99.0 3E-09 6.5E-14 86.3 11.3 102 107-244 2-104 (106)
140 cd04625 CBS_pair_12 The CBS do 99.0 5.1E-09 1.1E-13 85.8 12.6 110 19-173 2-112 (112)
141 cd04611 CBS_pair_PAS_GGDEF_DUF 99.0 4E-09 8.6E-14 86.0 12.0 108 107-245 2-110 (111)
142 cd04620 CBS_pair_7 The CBS dom 99.0 5.4E-09 1.2E-13 86.2 12.8 109 19-172 2-114 (115)
143 cd04583 CBS_pair_ABC_OpuCA_ass 99.0 6.2E-09 1.3E-13 84.6 12.7 105 19-172 3-108 (109)
144 cd04585 CBS_pair_ACT_assoc2 Th 99.0 6E-09 1.3E-13 86.2 12.6 116 19-173 2-122 (122)
145 cd04595 CBS_pair_DHH_polyA_Pol 99.0 6.7E-09 1.4E-13 84.9 12.7 107 18-172 2-109 (110)
146 cd04633 CBS_pair_20 The CBS do 99.0 4.5E-09 9.7E-14 87.4 11.7 115 19-173 2-121 (121)
147 TIGR01137 cysta_beta cystathio 99.0 3.5E-09 7.6E-14 109.3 13.3 124 3-174 330-453 (454)
148 cd04637 CBS_pair_24 The CBS do 99.0 6.5E-09 1.4E-13 86.6 12.4 116 19-173 2-122 (122)
149 cd04592 CBS_pair_EriC_assoc_eu 99.0 3.2E-09 6.9E-14 91.5 10.4 118 198-374 2-119 (133)
150 cd04604 CBS_pair_KpsF_GutQ_ass 99.0 6.8E-09 1.5E-13 85.1 11.8 111 19-173 3-114 (114)
151 cd04635 CBS_pair_22 The CBS do 99.0 6.2E-09 1.3E-13 86.6 11.6 117 18-172 1-121 (122)
152 cd04612 CBS_pair_SpoIVFB_EriC_ 99.0 1.1E-08 2.4E-13 83.4 12.6 109 18-172 1-110 (111)
153 cd04622 CBS_pair_9 The CBS dom 99.0 1.4E-08 3E-13 83.2 12.9 111 18-172 1-112 (113)
154 cd04802 CBS_pair_3 The CBS dom 99.0 1.5E-08 3.2E-13 83.0 13.0 110 18-172 1-111 (112)
155 PRK07107 inosine 5-monophospha 98.9 7.6E-09 1.7E-13 107.7 12.7 123 9-174 95-219 (502)
156 cd04640 CBS_pair_27 The CBS do 98.9 4.8E-09 1E-13 88.5 8.9 114 19-172 2-125 (126)
157 cd04596 CBS_pair_DRTGG_assoc T 98.9 1.7E-08 3.6E-13 82.5 11.6 104 19-172 3-107 (108)
158 cd04602 CBS_pair_IMPDH_2 This 98.9 2E-08 4.4E-13 82.9 11.9 108 19-172 3-113 (114)
159 cd04599 CBS_pair_GGDEF_assoc2 98.9 2E-08 4.3E-13 81.2 11.6 101 19-171 2-103 (105)
160 cd04601 CBS_pair_IMPDH This cd 98.9 1.3E-08 2.9E-13 82.8 10.3 106 18-172 2-109 (110)
161 PLN02274 inosine-5'-monophosph 98.9 1.7E-08 3.7E-13 105.2 13.6 114 18-175 108-222 (505)
162 cd02205 CBS_pair The CBS domai 98.9 3.5E-08 7.5E-13 79.5 12.6 111 19-173 2-113 (113)
163 cd04584 CBS_pair_ACT_assoc Thi 98.9 3.7E-08 8E-13 81.7 12.4 115 19-172 2-120 (121)
164 PRK11573 hypothetical protein; 98.9 8.3E-08 1.8E-12 98.0 17.2 166 4-215 183-349 (413)
165 TIGR00393 kpsF KpsF/GutQ famil 98.9 2.1E-08 4.6E-13 96.1 12.1 103 8-136 155-259 (268)
166 cd04592 CBS_pair_EriC_assoc_eu 98.9 2.7E-08 5.8E-13 85.7 11.2 107 19-138 2-119 (133)
167 cd04610 CBS_pair_ParBc_assoc T 98.8 4.2E-08 9E-13 79.5 11.6 105 18-173 2-107 (107)
168 PF00571 CBS: CBS domain CBS d 98.8 9.3E-09 2E-13 74.7 6.8 56 10-80 1-56 (57)
169 cd04606 CBS_pair_Mg_transporte 98.8 2.7E-08 5.9E-13 81.3 10.1 101 23-173 2-108 (109)
170 TIGR01302 IMP_dehydrog inosine 98.8 2.8E-08 6E-13 102.6 12.2 112 18-174 88-200 (450)
171 cd04634 CBS_pair_21 The CBS do 98.8 5.6E-08 1.2E-12 84.1 12.3 115 18-172 1-142 (143)
172 cd04594 CBS_pair_EriC_assoc_ar 98.8 5.2E-08 1.1E-12 79.2 11.3 99 21-172 4-103 (104)
173 PTZ00314 inosine-5'-monophosph 98.8 9.6E-08 2.1E-12 99.6 15.7 113 18-174 104-217 (495)
174 cd04591 CBS_pair_EriC_assoc_eu 98.8 5.8E-08 1.3E-12 79.5 10.9 101 107-245 3-104 (105)
175 COG2239 MgtE Mg/Co/Ni transpor 98.8 7.3E-08 1.6E-12 98.7 13.2 125 183-392 128-255 (451)
176 PRK11573 hypothetical protein; 98.7 1.3E-07 2.7E-12 96.7 13.7 128 184-393 184-314 (413)
177 cd04598 CBS_pair_GGDEF_assoc T 98.7 2.7E-07 5.8E-12 76.3 12.0 112 19-172 2-118 (119)
178 COG1253 TlyC Hemolysins and re 98.7 7E-07 1.5E-11 91.7 16.1 163 4-215 202-366 (429)
179 TIGR01186 proV glycine betaine 98.6 6E-07 1.3E-11 90.2 14.3 113 195-392 248-360 (363)
180 cd04638 CBS_pair_25 The CBS do 98.6 8E-07 1.7E-11 72.1 11.5 103 19-172 2-105 (106)
181 COG4109 Predicted transcriptio 98.5 5.6E-07 1.2E-11 87.6 11.1 119 9-177 189-308 (432)
182 COG1253 TlyC Hemolysins and re 98.4 1.9E-06 4.2E-11 88.5 12.9 126 184-393 203-331 (429)
183 PRK10070 glycine betaine trans 98.4 1.8E-06 3.9E-11 87.9 12.4 107 201-392 289-395 (400)
184 smart00116 CBS Domain in cysta 98.3 2.4E-06 5.2E-11 58.0 6.2 48 342-389 1-48 (49)
185 KOG2550 IMP dehydrogenase/GMP 98.3 1.2E-06 2.5E-11 86.8 6.2 107 198-388 117-226 (503)
186 COG4536 CorB Putative Mg2+ and 98.3 9.9E-06 2.2E-10 79.7 12.1 128 5-175 197-324 (423)
187 cd04597 CBS_pair_DRTGG_assoc2 98.1 6.5E-06 1.4E-10 68.5 6.7 53 335-387 60-112 (113)
188 KOG2550 IMP dehydrogenase/GMP 98.0 2.3E-05 4.9E-10 77.9 7.7 163 35-245 54-225 (503)
189 cd04597 CBS_pair_DRTGG_assoc2 97.9 1.8E-05 3.9E-10 65.8 5.5 54 187-244 58-111 (113)
190 COG2239 MgtE Mg/Co/Ni transpor 97.8 0.00016 3.5E-09 74.4 11.2 118 7-176 131-254 (451)
191 KOG0474 Cl- channel CLC-7 and 97.7 6E-05 1.3E-09 78.4 6.1 154 193-389 586-746 (762)
192 COG4535 CorC Putative Mg2+ and 97.6 0.00023 5E-09 66.2 7.9 116 197-394 77-193 (293)
193 PRK10070 glycine betaine trans 97.5 0.0011 2.3E-08 67.7 12.8 106 22-176 289-394 (400)
194 TIGR01186 proV glycine betaine 97.5 0.0013 2.8E-08 66.3 13.0 106 21-176 253-359 (363)
195 smart00116 CBS Domain in cysta 97.5 0.00031 6.6E-09 47.3 5.7 47 20-79 2-48 (49)
196 COG4536 CorB Putative Mg2+ and 97.4 0.0013 2.8E-08 65.2 10.7 130 185-396 198-330 (423)
197 COG4535 CorC Putative Mg2+ and 97.4 0.00055 1.2E-08 63.8 7.3 155 7-210 66-222 (293)
198 KOG0474 Cl- channel CLC-7 and 97.3 0.00074 1.6E-08 70.6 7.6 136 4-174 578-746 (762)
199 KOG0475 Cl- channel CLC-3 and 96.6 0.0067 1.4E-07 63.7 8.1 135 198-389 557-694 (696)
200 KOG0475 Cl- channel CLC-3 and 95.9 0.058 1.3E-06 56.9 10.6 123 15-174 553-694 (696)
201 COG4175 ProV ABC-type proline/ 95.0 0.1 2.2E-06 51.3 8.1 51 340-391 334-384 (386)
202 TIGR03415 ABC_choXWV_ATP choli 95.0 0.039 8.5E-07 56.0 5.6 50 340-391 332-381 (382)
203 COG1125 OpuBA ABC-type proline 88.9 0.67 1.4E-05 44.5 4.9 36 353-388 273-308 (309)
204 TIGR03415 ABC_choXWV_ATP choli 87.4 0.46 1E-05 48.3 3.0 43 197-243 333-375 (382)
205 COG4175 ProV ABC-type proline/ 83.3 1.1 2.3E-05 44.4 3.2 42 196-240 334-375 (386)
206 COG1125 OpuBA ABC-type proline 71.4 6.9 0.00015 37.7 4.8 43 23-78 266-308 (309)
207 KOG0476 Cl- channel CLC-2 and 69.8 5.9 0.00013 43.3 4.4 59 335-393 590-650 (931)
208 KOG2118 Predicted membrane pro 67.9 7.5 0.00016 41.0 4.8 109 5-135 201-310 (498)
209 PF05198 IF3_N: Translation in 53.2 29 0.00062 26.9 4.5 27 364-390 12-38 (76)
210 KOG0476 Cl- channel CLC-2 and 42.4 28 0.0006 38.3 3.8 63 6-81 586-648 (931)
211 PF13673 Acetyltransf_10: Acet 28.8 88 0.0019 24.7 4.1 31 353-383 32-62 (117)
212 PF14827 Cache_3: Sensory doma 28.5 57 0.0012 26.8 2.9 17 366-382 93-109 (116)
213 PF13365 Trypsin_2: Trypsin-li 24.6 42 0.0009 26.8 1.4 20 216-237 101-120 (120)
214 PF14827 Cache_3: Sensory doma 24.0 67 0.0014 26.4 2.5 17 223-239 92-108 (116)
215 PF13508 Acetyltransf_7: Acety 22.1 80 0.0017 23.5 2.5 18 365-382 3-20 (79)
216 PF02743 Cache_1: Cache domain 21.4 75 0.0016 23.9 2.2 25 367-391 19-43 (81)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.98 E-value=5.4e-31 Score=263.68 Aligned_cols=287 Identities=25% Similarity=0.382 Sum_probs=224.1
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
-|+..+++.+++...-+++.++..+++.+|+.+|..++..++||||.. +++++|++++.|++.++...
T Consensus 61 ~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~------------~~~~~g~~~~~d~i~~~~~~ 128 (381)
T KOG1764|consen 61 KFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSK------------KQQFVGMLTITDFITVLLRY 128 (381)
T ss_pred HHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCc------------cceeEEEEEHHHHHHHHHHh
Confidence 477889999999888899999999999999999999999999999986 47999999999999988642
Q ss_pred CCC-CChhhh---------hcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhccccc
Q 016003 83 SNS-LSPSLA---------LKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSS 151 (397)
Q Consensus 83 ~~l-~~~~~~---------~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~ 151 (397)
... .+.... -..++..+.......++..+.|..++.+++..+. .++||++|.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~-------------- 194 (381)
T KOG1764|consen 129 YKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPE-------------- 194 (381)
T ss_pred hccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeeccc--------------
Confidence 110 011111 1234545554443445699999999999999888 799999987621
Q ss_pred ccccCCCCceeeeecHHHHHHHHHhccCCC--CCCccCCccccCCCCcC-eEEEeCCCcHHHHHHHHHhcCCCCCEEEEE
Q 016003 152 SSLTNHNGREFCWLTQEDIIRFILSSISLF--SPIPALSIDSLGIISTD-VVAVDYHSPASLALEAISRSLFDQTSVAVV 228 (397)
Q Consensus 152 ~~~~~~~~~~~~IITq~DIi~~l~~~~~~l--~~l~~~ti~~L~~~~~~-v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV 228 (397)
.+.+.+++||..|++|++.+.+.+ ..+..+++.+|++.+-. +..+..++++.+|+++|...++ +++|||
T Consensus 195 ------~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~i--s~lpvV 266 (381)
T KOG1764|consen 195 ------TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRI--SALPVV 266 (381)
T ss_pred ------ccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCc--CcceEE
Confidence 136788999999999999987776 47889999999998854 9999999999999999999999 999999
Q ss_pred cCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHH-HHHHhhhcchhhhhhhhccccCCCCCCCC
Q 016003 229 DSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRV-VKERLKDKGLEGMLEHFDMSSSLMPYLST 307 (397)
Q Consensus 229 d~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (397)
|..|+++|++|..|..+ ..... .+..+... +++++
T Consensus 267 ~~~g~~v~~~s~~Dv~~-------------------l~~~~-~~~~~~~~~l~~~~------------------------ 302 (381)
T KOG1764|consen 267 DENGKKVGNYSRFDVIH-------------------LAREG-TYNNLDLSCLSEAL------------------------ 302 (381)
T ss_pred cCCCceecceehhhhhh-------------------hhhcC-ccCccchhHHHHHh------------------------
Confidence 99998899966555544 22110 01111000 00000
Q ss_pred CCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 308 SSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
..+. ....+++||++++||++++++|+.+++||+||||++|+++||||++||+.
T Consensus 303 -------------~~~~-------------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~ 356 (381)
T KOG1764|consen 303 -------------SHRP-------------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILS 356 (381)
T ss_pred -------------hhcc-------------cccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHH
Confidence 0011 12346999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 016003 388 VFRKHL 393 (397)
Q Consensus 388 ~l~~~~ 393 (397)
++....
T Consensus 357 ~l~~~p 362 (381)
T KOG1764|consen 357 YLVLTP 362 (381)
T ss_pred HHHhCc
Confidence 998764
No 2
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.73 E-value=2.1e-17 Score=155.44 Aligned_cols=208 Identities=15% Similarity=0.203 Sum_probs=147.9
Q ss_pred CceEEeCCCCCHHHHHHHHhcCCceEEEeccCcch--h-hhhhhccccccccc--------CCCCceeeeecHHHHHHHH
Q 016003 106 PLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLS--I-KRKQQQKLSSSSLT--------NHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 106 ~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~--~-~~~~~~~~~~~~~~--------~~~~~~~~IITq~DIi~~l 174 (397)
.++|++-.++-++-.+.+++++.-|..+|..-... + .+..++.|++...+ ...-..+--|++.|+-+.|
T Consensus 151 F~l~Pval~SliLv~~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~ll 230 (382)
T COG3448 151 FVLWPVALNSLILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLL 230 (382)
T ss_pred ceehhhhhhhHHHHHHHHHHHHHhcCCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHH
Confidence 46888999999998898888778787788632211 1 11123333321111 1222445578888888887
Q ss_pred Hhc-----cCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchh
Q 016003 175 LSS-----ISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDET 249 (397)
Q Consensus 175 ~~~-----~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~ 249 (397)
.+. .+..+.+.+. +||+++|+|+.+++++.+|.++|.+|++ .++||+|++.+++|+++.
T Consensus 231 r~~elqa~~R~~~~Ltca-----dIMSrdVvtv~~~ts~dhA~~ll~~H~i--kaLPV~d~~~rl~GiVt~--------- 294 (382)
T COG3448 231 RETELQALRRRMGELTCA-----DIMSRDVVTVSTDTSIDHARKLLQEHRI--KALPVLDEHRRLVGIVTQ--------- 294 (382)
T ss_pred HHHHHHHHHHHhccccHH-----HhcCccceecCCcCChHHHHHHHHHcCc--ccccccccccceeeeeeH---------
Confidence 653 1223333333 4899999999999999999999999999 999999999999999664
Q ss_pred HHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccc
Q 016003 250 VAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSR 329 (397)
Q Consensus 250 ~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (397)
+||.+.... +| ...++ +. +..+
T Consensus 295 ----------~dl~~~a~~-~p----------------~qrlr--~~--------------------------~~~~--- 316 (382)
T COG3448 295 ----------RDLLKHARP-SP----------------FQRLR--FL--------------------------RPPT--- 316 (382)
T ss_pred ----------HHHhhccCc-ch----------------HHHhh--cc--------------------------CCCc---
Confidence 444431110 00 11110 00 0111
Q ss_pred cccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 330 SMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 330 ~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
.+.+|+.++.|+.|+++..+.+-.+.+.+.|.+||+|++|+++||||.+|++.+++..
T Consensus 317 -----vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 317 -----VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred -----ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 1246899999999999999999999999999999999999999999999999999875
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.70 E-value=9e-17 Score=148.82 Aligned_cols=127 Identities=18% Similarity=0.265 Sum_probs=106.6
Q ss_pred CCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 181 FSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 181 l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
...++..++.+ +|+++++++.+++++.+|.+.+.++++ .+.||+|++ +++|+ ++.+
T Consensus 166 m~siPk~~V~~--~~s~~~i~v~~d~tl~eaak~f~~~~i--~GaPVvd~d-k~vGi-------------------it~~ 221 (294)
T COG2524 166 MVSIPKEKVKN--LMSKKLITVRPDDTLREAAKLFYEKGI--RGAPVVDDD-KIVGI-------------------ITLS 221 (294)
T ss_pred eeecCcchhhh--hccCCceEecCCccHHHHHHHHHHcCc--cCCceecCC-ceEEE-------------------EEHH
Confidence 34567778877 799999999999999999999999999 999999976 99999 5567
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|+...+..+ .+ ..+ ..++|.
T Consensus 222 dI~~aia~g--------------------~~--------------------------------~~k--------V~~~M~ 241 (294)
T COG2524 222 DIAKAIANG--------------------NL--------------------------------DAK--------VSDYMR 241 (294)
T ss_pred HHHHHHHcC--------------------Cc--------------------------------ccc--------HHHHhc
Confidence 776533210 00 001 124689
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
++++|++.|.++.+|+++|..+++.||-|+|++|+++|+||++|||+.++.
T Consensus 242 k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 242 KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999998864
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.66 E-value=6.1e-16 Score=143.34 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=108.6
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
-..+|.++| +++++++++++|+.+|.+.+++++|.++||.|. ++++||++..||...+++.
T Consensus 170 Pk~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--------------dk~vGiit~~dI~~aia~g--- 230 (294)
T COG2524 170 PKEKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--------------DKIVGIITLSDIAKAIANG--- 230 (294)
T ss_pred Ccchhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC--------------CceEEEEEHHHHHHHHHcC---
Confidence 356789999 688999999999999999999999999999995 5899999999999998863
Q ss_pred CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 86 LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 86 ~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
.++.+|+++|.++ +++++.++.|.||+++|. ++++|++|.+++ ++.+||
T Consensus 231 -----~~~~kV~~~M~k~----vitI~eDe~i~dAir~M~~~nVGRLlV~ds~---------------------gkpvGi 280 (294)
T COG2524 231 -----NLDAKVSDYMRKN----VITINEDEDIYDAIRLMNKNNVGRLLVTDSN---------------------GKPVGI 280 (294)
T ss_pred -----CccccHHHHhccC----CceEcCchhHHHHHHHHHhcCcceEEEEccC---------------------CcEEEE
Confidence 3467899999877 999999999999999999 899999998643 577899
Q ss_pred ecHHHHHHHHH
Q 016003 165 LTQEDIIRFIL 175 (397)
Q Consensus 165 ITq~DIi~~l~ 175 (397)
||.+||++.++
T Consensus 281 ITrTDIL~~ia 291 (294)
T COG2524 281 ITRTDILTRIA 291 (294)
T ss_pred EehHHHHHHhh
Confidence 99999999875
No 5
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=6.8e-15 Score=119.84 Aligned_cols=94 Identities=23% Similarity=0.309 Sum_probs=82.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
.++++.+++++.+|++.|.++++ +++||+|++ |+++|+| |.+|+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~~~~~~Giv-------------------t~~Dl~~~----------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGI--RSAPLWDSRKQQFVGML-------------------TITDFILI----------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCC--ceEEEEeCCCCEEEEEE-------------------EHHHHhhh-----------
Confidence 47899999999999999999999 999999975 8999994 45555420
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
+. +++|+|++++.+++
T Consensus 50 --------------------------------------------------------------~~--~~~v~~~~~l~~a~ 65 (98)
T cd04618 50 --------------------------------------------------------------LR--LVSIHPERSLFDAA 65 (98)
T ss_pred --------------------------------------------------------------ee--eEEeCCCCcHHHHH
Confidence 01 68999999999999
Q ss_pred HHHHHcCCcEEEEEcCC-CcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDD-CTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~-~~lvGvVt~~DIl~ 387 (397)
++|.+++++++||+|++ |+++|+||.+||++
T Consensus 66 ~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 66 LLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 99999999999999987 89999999999986
No 6
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3e-14 Score=119.18 Aligned_cols=120 Identities=17% Similarity=0.280 Sum_probs=90.0
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++++++++.+|++.|.++++ +++||+|++|+++|+ ++.+|++.+...+.+. .
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~--~~~pVv~~~~~~~Gi-------------------v~~~dl~~~~~~~~~~-~-- 56 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRV--SALPIVDENGKVVDV-------------------YSRFDVINLAKEGAYN-N-- 56 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCC--CeeeEECCCCeEEEE-------------------EeHHHHHHHHhcCccc-c--
Confidence 467899999999999999999999 999999999999999 5566666532110000 0
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
..... .+. . .....|..++.+|++++++.+++
T Consensus 57 ----------~~~~~-------------------------~~~-------~------~~~~~~~~~~~~v~~~~~l~~~~ 88 (120)
T cd04641 57 ----------LDLTV-------------------------GEA-------L------ERRSQDFEGVRTCSPDDCLRTIF 88 (120)
T ss_pred ----------ccCCH-------------------------HHH-------H------hhcccCCCCCeEEcCCCcHHHHH
Confidence 00000 000 0 00012456789999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++|.+++++++||+|++|+++|+||+.|++++
T Consensus 89 ~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 89 DLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred HHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 99999999999999998999999999999863
No 7
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.56 E-value=1.7e-14 Score=152.17 Aligned_cols=201 Identities=16% Similarity=0.111 Sum_probs=135.2
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
.+|+|+| .++++++++++++.+|+++|.++++..+||+|. +++++|+++..|+..++.+.....
T Consensus 68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-------------~g~l~Givt~~di~~~~~~~~~~~- 131 (546)
T PRK14869 68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE-------------EGKLLGLVSLSDLARAYMDILDPE- 131 (546)
T ss_pred CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCEEEEEEEHHHHHHHHHhhcchh-
Confidence 6899999 467999999999999999999999999999996 368999999999998766422100
Q ss_pred hhhhhcCChhhhc--------------------------------cCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEec
Q 016003 88 PSLALKQPVSVLL--------------------------------PQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPI 135 (397)
Q Consensus 88 ~~~~~~~~V~~lm--------------------------------~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~ 135 (397)
.-.....++.++. ..-.++.++.+.....+.. ..+..|+..+.+..
T Consensus 132 ~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~--~ai~~~~~~lIlt~ 209 (546)
T PRK14869 132 ILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQL--AAIEAGVRLLIITG 209 (546)
T ss_pred hhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHH--HHHHcCCCEEEECC
Confidence 0001111121111 1111233444433333222 22336777776653
Q ss_pred cCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCccCCccccCCCC-cCeEEEeCCCcHHHHHHH
Q 016003 136 KNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPALSIDSLGIIS-TDVVAVDYHSPASLALEA 214 (397)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~-~~v~tv~~~~~~~~a~~~ 214 (397)
......... .......+..|.|+.|..+....-. ...++++ +|+ ++++++++++++.+|.+.
T Consensus 210 g~~~~~~v~---------~la~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~--iM~~~~~~~~~~~~~~~~~~~~ 272 (546)
T PRK14869 210 GAPVSEDVL---------ELAKENGVTVISTPYDTFTTARLIN------QSIPVSY--IMTTEDLVTFSKDDYLEDVKEV 272 (546)
T ss_pred CCCCCHHHH---------HHHHhCCCeEEEecccHHHHHHHhh------cCCCHHH--hccCCCcEEECCCCcHHHHHHH
Confidence 221100000 0012235667899999887765321 1455666 799 899999999999999999
Q ss_pred HHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 215 ISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 215 m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
|.++++ ..+||||++|+++|+||.+||.+
T Consensus 273 m~~~~~--~~~PVvd~~g~lvGiit~~dl~~ 301 (546)
T PRK14869 273 MLKSRY--RSYPVVDEDGKVVGVISRYHLLS 301 (546)
T ss_pred HHhcCC--CceEEEcCCCCEEEEEEHHHhhc
Confidence 999999 99999999999999977666655
No 8
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=1e-13 Score=114.54 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=87.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|...+. +.+||+|++|+++|+| +..|++.....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~--~~~~V~d~~~~~~G~v-------------------~~~dl~~~~~~--------- 51 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGA--RAVVVVDEENKVLGQV-------------------TLSDLLEIGPN--------- 51 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCC--CEEEEEcCCCCEEEEE-------------------EHHHHHhhccc---------
Confidence 46789999999999999998888 9999999999999994 56665541000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.+. ... ..++|..++.++.+++++.+++.
T Consensus 52 -----------------------~~~--------------------~~~--------v~~~~~~~~~~v~~~~~l~~al~ 80 (111)
T cd04603 52 -----------------------DYE--------------------TLK--------VCEVYIVPVPIVYCDSKVTDLLR 80 (111)
T ss_pred -----------------------ccc--------------------ccC--------hhheeecCCcEECCCCcHHHHHH
Confidence 000 000 01235667899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+|.+++.+++||+|++|+++|+||.+||++
T Consensus 81 ~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 81 IFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 999999999999999899999999999986
No 9
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=9.5e-14 Score=112.40 Aligned_cols=95 Identities=23% Similarity=0.345 Sum_probs=83.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|.+.++ +.+||+|++|+++|+ ++.+|++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~------------ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANV--KALPVLDDDGKLSGI-------------------ITERDLIAK------------ 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEE-------------------EEHHHHhcC------------
Confidence 57889999999999999999988 999999999999998 445555430
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..+.+|.+++++.+++.
T Consensus 49 ---------------------------------------------------------------~~~~~v~~~~~l~~a~~ 65 (96)
T cd04614 49 ---------------------------------------------------------------SEVVTATKRTTVSECAQ 65 (96)
T ss_pred ---------------------------------------------------------------CCcEEecCCCCHHHHHH
Confidence 02588999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+++++++||+|++|+++|+||++||+++
T Consensus 66 ~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 66 KMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred HHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 9999999999999988899999999999874
No 10
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=3.1e-13 Score=112.16 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=87.7
Q ss_pred eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHH
Q 016003 199 VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRV 278 (397)
Q Consensus 199 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~ 278 (397)
|.++.+++++.+|++.|.+.+. ..+||+|++|+++|+|| .+|++.....
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~g~~~G~vt-------------------~~dl~~~~~~---------- 51 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGI--DLVVVCDPHGKLAGVLT-------------------KTDVVRQMGR---------- 51 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCC--CEEEEECCCCCEEEEEe-------------------hHHHHHHHhh----------
Confidence 7789999999999999999988 99999999999999954 5555431100
Q ss_pred HHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHH
Q 016003 279 VKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQ 358 (397)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~ 358 (397)
. . ... . . ....+.|..++++|++++++.+++..
T Consensus 52 ----~------------~---~~~--------------~------~--------~~v~~~~~~~~~~v~~~~~l~~a~~~ 84 (114)
T cd04619 52 ----C------------G---GPG--------------C------T--------APVENVMTRAVVSCRPGDLLHDVWQV 84 (114)
T ss_pred ----c------------C---CCc--------------c------c--------CCHHHHhcCCCeeECCCCCHHHHHHH
Confidence 0 0 000 0 0 00113466788999999999999999
Q ss_pred HHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 359 AIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 359 m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
|.+++++++||+|++|+++|+||+.|+++
T Consensus 85 m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 85 MKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999998899999999999986
No 11
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.49 E-value=1.9e-13 Score=118.37 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=99.4
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP 88 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~ 88 (397)
++..+| +.+++++.+++++.+|+++|.++||+.+||.+. +.+||-|++.||++.+.++.
T Consensus 66 ta~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--------------~k~VGsItE~~iv~~~le~~----- 124 (187)
T COG3620 66 TAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--------------DKVVGSITENDIVRALLEGM----- 124 (187)
T ss_pred eHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--------------CeeeeeecHHHHHHHHhccc-----
Confidence 577888 579999999999999999999999999999995 68999999999999988752
Q ss_pred hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHH
Q 016003 89 SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQE 168 (397)
Q Consensus 89 ~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~ 168 (397)
+......|+++|+.. |++|+++.+|..+-.++ .+...++|.. +|+.+||||+.
T Consensus 125 e~i~~~~vr~vM~e~----fP~Vs~~~~l~vI~~LL-~~~~AVlV~e----------------------~G~~vGIITk~ 177 (187)
T COG3620 125 ESIRSLRVREVMGEP----FPTVSPDESLNVISQLL-EEHPAVLVVE----------------------NGKVVGIITKA 177 (187)
T ss_pred cchhhhhHHHHhcCC----CCcCCCCCCHHHHHHHH-hhCCeEEEEe----------------------CCceEEEEeHH
Confidence 234467899999866 99999999987666554 4445555552 35789999999
Q ss_pred HHHHHHHh
Q 016003 169 DIIRFILS 176 (397)
Q Consensus 169 DIi~~l~~ 176 (397)
||++++.+
T Consensus 178 DI~k~~~~ 185 (187)
T COG3620 178 DIMKLLAG 185 (187)
T ss_pred HHHHHHhc
Confidence 99999864
No 12
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=4e-13 Score=113.48 Aligned_cols=124 Identities=27% Similarity=0.453 Sum_probs=88.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|.++++ +++||+|++|+++|+++ .+|++.....+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~--~~i~V~d~~~~~~Giv~-------------------~~dl~~~~~~~~~------ 54 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNI--SGLPVVDEKGKLIGNIS-------------------ASDLKGLLLSPDD------ 54 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCC--CcccEECCCCcEEEEEE-------------------HHHhhhhhcCcch------
Confidence 47889999999999999999988 99999999999999955 5555542210000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
... .....+.. +. ++ .. .....+..++++|.+++++.++++
T Consensus 55 ----~~~-~~~~~~~~-~~--------------------~~--------~~-----~~~~~~~~~~~~v~~~~~l~~a~~ 95 (126)
T cd04642 55 ----LLL-YRTITFKE-LS--------------------EK--------FT-----DSDGVKSRPLITCTPSSTLKEVIT 95 (126)
T ss_pred ----hhc-ccchhhhh-hh--------------------hh--------cc-----cccccccCCCeEECCCCcHHHHHH
Confidence 000 00000000 00 00 00 001135668999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+|.+++++++||+|++++++|+||.+||++
T Consensus 96 ~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 96 KLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred HHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 999999999999999899999999999985
No 13
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.47 E-value=1.6e-13 Score=139.56 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=98.9
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+++.+.++|++.+|+.+|.+.|.++|+ +++.+++++|++.|||| .+|++..+
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km~~~gv--~s~v~l~~~~~~~GIvT-------------------~~dl~~~v------- 205 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKMKDEGV--SSLVVLDDSGPLLGIVT-------------------RKDLRSRV------- 205 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHHHhcCC--CeEEEEcCCCCccceee-------------------hHHHHHHH-------
Confidence 578899999999999999999999999 99999999999999954 66666522
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
+.. +.++ +.....+|+.|++++.+++-+-
T Consensus 206 ---------------------~~~---g~~~---------------------------~~~V~evmT~p~~svd~~~~~f 234 (610)
T COG2905 206 ---------------------IAD---GRSK---------------------------TQKVSEVMTSPVISVDRGDFLF 234 (610)
T ss_pred ---------------------Hhc---CCCc---------------------------ccchhhhhccCceeecCcchHH
Confidence 010 0100 1223357999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+||-+|.+++||||||+++ |+++||||++|||+.+.+
T Consensus 235 eAml~m~r~~I~hl~V~e~-gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 235 EAMLMMLRNRIKHLPVTED-GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred HHHHHHHHhCCceeeeecC-CeeeEEeeHHHHHHhhCC
Confidence 9999999999999999987 899999999999999864
No 14
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.47 E-value=4.1e-13 Score=132.68 Aligned_cols=119 Identities=22% Similarity=0.276 Sum_probs=94.7
Q ss_pred CccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 188 SIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 188 ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
++++ +|++ +++++++++++.+|++.|.+.++ +.+||+|++|+++|+| +.+|+++.
T Consensus 203 ~V~d--im~~~~~~~~v~~~~sl~~a~~~~~~~~~--~~~vVvd~~g~lvGiv-------------------t~~Dl~~~ 259 (326)
T PRK10892 203 RVSD--IMHTGDEIPHVSKTASLRDALLEITRKNL--GMTVICDDNMKIEGIF-------------------TDGDLRRV 259 (326)
T ss_pred cHHH--HhCCCCCCeEECCCCCHHHHHHHHHhcCC--CeEEEEcCCCcEEEEE-------------------ecHHHHHH
Confidence 4444 7887 89999999999999999999888 8999999999999995 45665542
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
...+ . .++ ..+..++|+.++++
T Consensus 260 ~~~~------------------~------------~~~----------------------------~~~v~~im~~~~~~ 281 (326)
T PRK10892 260 FDMG------------------I------------DLR----------------------------QASIADVMTPGGIR 281 (326)
T ss_pred HhcC------------------C------------Ccc----------------------------cCCHHHhcCCCCEE
Confidence 1100 0 000 00112457889999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+.+++++.+++++|.+++++++||+|+ ++++||||++||+++
T Consensus 282 v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~lvGiit~~dil~~ 323 (326)
T PRK10892 282 VRPGILAVDALNLMQSRHITSVLVADG-DHLLGVLHMHDLLRA 323 (326)
T ss_pred ECCCCCHHHHHHHHHHCCCcEEEEeeC-CEEEEEEEhHHhHhc
Confidence 999999999999999999999999985 799999999999985
No 15
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.46 E-value=6.3e-13 Score=130.94 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=97.8
Q ss_pred cCCccccCCCCcC--eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhh
Q 016003 186 ALSIDSLGIISTD--VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLM 263 (397)
Q Consensus 186 ~~ti~~L~~~~~~--v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~ 263 (397)
..++++ +|+++ ++++++++++.+|++.|..++. +.+||||++|+++|+ ++.+|++
T Consensus 196 ~~~V~~--im~~~~~~~~v~~~~sv~~a~~~~~~~~~--~~~~Vvd~~g~~iG~-------------------vt~~dl~ 252 (321)
T PRK11543 196 LNKVHH--LMRRDDAIPQVALTASVMDAMLELSRTGL--GLVAVCDAQQQVQGV-------------------FTDGDLR 252 (321)
T ss_pred HhHHHH--HhccCCCCcEeCCCCCHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------ecHHHHH
Confidence 345555 79888 9999999999999999998888 999999999999999 5567766
Q ss_pred hhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCcc
Q 016003 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEA 343 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
..+... ..+ . ....++|..++
T Consensus 253 ~~~~~~-------------------------------~~~--------------------~--------~~v~~im~~~~ 273 (321)
T PRK11543 253 RWLVGG-------------------------------GAL--------------------T--------TPVNEAMTRGG 273 (321)
T ss_pred HHHhCC-------------------------------CCc--------------------C--------CcHHHhcCCCC
Confidence 522100 000 0 00123577889
Q ss_pred EEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 344 it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+++.+++++.+++++|.++++.++||||++|+++|+||+.||+++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999988999999999999975
No 16
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.2e-12 Score=109.30 Aligned_cols=111 Identities=23% Similarity=0.247 Sum_probs=86.1
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++++++++.+|++.|..+++ +.+||+|++|+++|+|+ ..|++......
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~--~~~~V~d~~~~~~Givt-------------------~~dl~~~~~~~-------- 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDV--GSLFVVDEDGDLVGVVS-------------------RKDLLKASIGG-------- 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEEEE-------------------HHHHHHHHHcC--------
Confidence 56889999999999999999999 99999999899999954 55554411000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC--CccEEeCCCCcHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR--AEAIVCHPTSSLMAV 355 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~it~~~~~sl~~v 355 (397)
..+ .... ...+|. .++.++++++++.++
T Consensus 53 ----------------------~~~--------------------~~~~--------~~~~~~~~~~~~~v~~~~~l~~~ 82 (118)
T cd04617 53 ----------------------ADL--------------------QKVP--------VGVIMTRMPNITTTTPEESVLEA 82 (118)
T ss_pred ----------------------CCc--------------------cCCC--------HHHHhCCCCCcEEECCCCcHHHH
Confidence 000 0000 012344 368899999999999
Q ss_pred HHHHHHcCCcEEEEEcCC---CcEEEEEehHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDD---CTLTGIVTFSDLLK 387 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~---~~lvGvVt~~DIl~ 387 (397)
+++|.+++++++||||++ |+++|+||.+||++
T Consensus 83 ~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 83 AKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999987 69999999999975
No 17
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.4e-12 Score=107.84 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=88.2
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++.++.+++++.+|++.|.++++ +.+||+|++ |+++|+ ++.+|++..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~~G~-------------------v~~~dl~~~~~~~------- 53 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGV--SSLVVEKRRESDAYGI-------------------VTMRDILKKVVAE------- 53 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCC--CEEEEEECCCCcEEEE-------------------EehHHHHHHHHhC-------
Confidence 57889999999999999998888 999999987 899999 5566766522100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
. . .+ . ......+|..++.++++++++.+++
T Consensus 54 ----------~--------~-----~~-------------~--------------~~~v~~~~~~~~~~v~~~~~l~~~~ 83 (114)
T cd04630 54 ----------G--------R-----DP-------------D--------------RVNVYEIMTKPLISVSPDMDIKYCA 83 (114)
T ss_pred ----------C--------C-----CC-------------C--------------ccCHHHHhcCCCeeECCCCCHHHHH
Confidence 0 0 00 0 0001124566889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.+|.+++.+++||+|+ |+++|+||+.||+++
T Consensus 84 ~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 84 RLMERTNIRRAPVVEN-NELIGIISLTDIFLA 114 (114)
T ss_pred HHHHHcCCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence 9999999999999998 899999999999863
No 18
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.2e-12 Score=109.46 Aligned_cols=123 Identities=23% Similarity=0.279 Sum_probs=90.5
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.++.++.++++.|.+.+. +.+||+|++|+++|+++ .+|++.+....... ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~Giv~-------------------~~~l~~~~~~~~~~-~~- 58 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRI--KALPVVDGDRRLVGIVT-------------------QRDLLRHARPDGRR-PL- 58 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCC--ceeeEECCCCCEEEEEE-------------------HHHHHhhhcccccc-hh-
Confidence 578899999999999999999888 99999999899999955 45544322100000 00
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.+ . +.. ... ......+|..+++++.+++++.+++
T Consensus 59 -----------~~-~---~~~-------------------------~~~------~~~i~~~~~~~~~~~~~~~~l~~~~ 92 (124)
T cd04600 59 -----------RG-R---LRG-------------------------RDK------PETVGDIMSPPVVTVRPDTPIAELV 92 (124)
T ss_pred -----------hh-h---hhc-------------------------ccc------cccHHHhccCCCeeeCCCCcHHHHH
Confidence 00 0 000 000 0011234677899999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++|.+++.+++||+|++|+++|+||..|++++
T Consensus 93 ~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 93 PLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred HHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999999988999999999999864
No 19
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.44 E-value=4.5e-13 Score=126.54 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=107.6
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
..-++.|+| ++.++++..++|+.+|.++|.+|+|..+||.|+ +.+++|||+.+|++....- ...
T Consensus 243 ~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-------------~~rl~GiVt~~dl~~~a~~-~p~ 306 (382)
T COG3448 243 GELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE-------------HRRLVGIVTQRDLLKHARP-SPF 306 (382)
T ss_pred ccccHHHhc--CccceecCCcCChHHHHHHHHHcCccccccccc-------------ccceeeeeeHHHHhhccCc-chH
Confidence 455789999 799999999999999999999999999999997 3589999999999975432 111
Q ss_pred CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 86 LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 86 ~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
+.....-...|+.+|+. ++.++.|+++..+++-.+. .|.|.++|.+. .|+.+||
T Consensus 307 qrlr~~~~~~vk~imt~----~v~tv~pdtpa~~lvp~lad~g~H~lpvld~---------------------~g~lvGI 361 (382)
T COG3448 307 QRLRFLRPPTVKGIMTT----PVVTVRPDTPAVELVPRLADEGLHALPVLDA---------------------AGKLVGI 361 (382)
T ss_pred HHhhccCCCcccccccC----cceeecCCCcHHHHHHHhhcCCcceeeEEcC---------------------CCcEEEE
Confidence 11222234679999964 4899999999999999998 78999988763 3688999
Q ss_pred ecHHHHHHHHHhc
Q 016003 165 LTQEDIIRFILSS 177 (397)
Q Consensus 165 ITq~DIi~~l~~~ 177 (397)
|||+|++.-++.+
T Consensus 362 vsQtDliaal~r~ 374 (382)
T COG3448 362 VSQTDLIAALYRN 374 (382)
T ss_pred eeHHHHHHHHHHH
Confidence 9999999988864
No 20
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.43 E-value=2.8e-13 Score=114.83 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=89.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.++.++.+|++.|.++++ +.+||+|++|+++|+ ++..|++..+...
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------i~~~dl~~~~~~~------- 53 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGF--DQLPVVDESGKILGM-------------------VTLGNLLSSLSSG------- 53 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEE-------------------EEHHHHHHHHHHh-------
Confidence 457889999999999999999998 999999999999999 4566665421100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
+ .. .. ....++|..++++|++++++.+++
T Consensus 54 -----~------------~~--------------------------~~--------~~v~~im~~~~~~v~~~~~~~~v~ 82 (124)
T cd04608 54 -----K------------VQ--------------------------PS--------DPVSKALYKQFKRVNKNDTLGKLS 82 (124)
T ss_pred -----c------------cC--------------------------CC--------CcHHHHhhccceecCCCCCHHHHH
Confidence 0 00 00 012346888999999999999999
Q ss_pred HHH---------HHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 357 IQA---------IAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 357 ~~m---------~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
++| .+.+.+++||+|++|+++||||.+||++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 965 344789999999889999999999999874
No 21
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=2.2e-12 Score=108.31 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=86.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++.++.+++++.+|++.|..+++ +.+||+|++ |+++|+|+ ..|++......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~~Giv~-------------------~~dl~~~~~~~------- 53 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGI--HRVAVTEEESGEVIGILS-------------------QRRLVEFLWEN------- 53 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCc--ceEEEEeCCCCcEEEEEE-------------------HHHHHHHHHHh-------
Confidence 57889999999999999998888 999999997 99999955 55554421100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
. .. .. . .++. .+. . ......|..++.++++++++.+++
T Consensus 54 -----~------~~----~~----~---------------~~~~-~~~-~------~~~~~~~~~~~~~v~~~~~l~~a~ 91 (123)
T cd04627 54 -----A------RS----FP----G---------------LDPL-YPI-P------LRDLTIGTSDVISINGDQPLIDAL 91 (123)
T ss_pred -----H------Hh----cc----c---------------hhhh-hhh-h------hhhcccCcCCceEeCCCCCHHHHH
Confidence 0 00 00 0 0000 000 0 000113567889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDL 385 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DI 385 (397)
++|.+++++++||+|++++++|+||.+||
T Consensus 92 ~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 92 HLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred HHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 99999999999999998999999999997
No 22
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=2.3e-12 Score=107.94 Aligned_cols=124 Identities=30% Similarity=0.387 Sum_probs=90.4
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchh
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDL 275 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l 275 (397)
++++++.++.++.+|+++|.+.+. .++||+|++ |+++|+| +..|++.++.....+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~--~~i~V~d~~~~~~~G~v-------------------~~~dl~~~~~~~~~~--- 56 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGF--RRLPVVDEGTGKLVGII-------------------TATDILKYLGGGEKF--- 56 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCc--ccceeEeCCCCEEEEEE-------------------EHHHHHHHhhccchh---
Confidence 357889999999999999999988 999999987 9999995 455655433210000
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v 355 (397)
... ... . ..+ ..+.+...++..++++|.+++++.++
T Consensus 57 -------------~~~---~~~--~---------------~~~-----------~~~~~~~~~~~~~~~~v~~~~~l~~~ 92 (125)
T cd04631 57 -------------NKI---KTG--N---------------GLE-----------AINEPVRSIMTRNVITITPDDSIKDA 92 (125)
T ss_pred -------------ccc---ccc--c---------------cch-----------hhhcCHHHHhcCCceEeCCCCcHHHH
Confidence 000 000 0 000 00011223456789999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++.|.+++.+++||+|++|+++|+||..||+++
T Consensus 93 ~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 93 AELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred HHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 999999999999999988899999999999874
No 23
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=3.6e-12 Score=104.38 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=86.6
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
.++.++.+++++.+|++.|.+++. +.+||+|++|+++|+| +..|++.....
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~V~d~~~~~~G~v-------------------~~~~l~~~~~~-------- 52 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGH--SRFPVVDEKNKVVGIV-------------------TSKDVAGKDPD-------- 52 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCC--CceeEECCCCeEEEEe-------------------cHHHHhccccc--------
Confidence 357889999999999999999888 9999999999999995 45555431000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
..+ ...|..++.++.+++++.+++
T Consensus 53 ---------~~v-----------------------------------------------~~~~~~~~~~v~~~~~l~~~~ 76 (108)
T cd04596 53 ---------TTI-----------------------------------------------EKVMTKNPITVNPKTSVASVA 76 (108)
T ss_pred ---------ccH-----------------------------------------------HHHhcCCCeEECCCCCHHHHH
Confidence 000 012455788999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++|.+++.+.+||+|++|+++|+||+.||++
T Consensus 77 ~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 77 HMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 9999999999999998899999999999986
No 24
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=2.4e-12 Score=132.93 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=95.5
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|.++++++.+++++.+|+++|.++++ +++||+|++|+++|+| +.+|+... +.
T Consensus 94 iMi~~pvtv~~d~tv~eA~~~m~~~~~--s~l~VVD~~gklvGIV-------------------T~rDL~~~-~~----- 146 (479)
T PRK07807 94 LVFDTPVTLSPDDTVGDALALLPKRAH--GAVVVVDEEGRPVGVV-------------------TEADCAGV-DR----- 146 (479)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCC--ceEEEECCCCeEEEEE-------------------eHHHHhcC-cc-----
Confidence 688999999999999999999999999 9999999999999995 45555320 00
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
... ..++|+.+++++++++++.
T Consensus 147 --------------------------------------------------~~~--------V~diMt~~~itV~~d~sL~ 168 (479)
T PRK07807 147 --------------------------------------------------FTQ--------VRDVMSTDLVTLPAGTDPR 168 (479)
T ss_pred --------------------------------------------------CCC--------HHHhccCCceEECCCCcHH
Confidence 000 1134678999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
++++.|.+++++++||||++++++|+||.+||++....
T Consensus 169 eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 169 EAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY 206 (479)
T ss_pred HHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 99999999999999999998999999999999997653
No 25
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=8e-12 Score=102.28 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=87.9
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.++.++.+|++.|.+++. +.+||+|++|+++|++ +..|++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v-------------------~~~~l~~~~~~~------- 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENI--NHLPVVDEDGRLVGIV-------------------TSWDISKAVARD------- 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCC--ceEEEECCCCcEEEEE-------------------eHHHHHHHHhhC-------
Confidence 567889999999999999999988 9999999999999994 566665421100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
. . . ....|..++.+|.+++++.+++
T Consensus 54 -------------------------~--------------------~--~--------~~~~~~~~~~~v~~~~~l~~~~ 78 (110)
T cd04605 54 -------------------------K--------------------K--S--------VEDIMTRNVITATPDEPIDVAA 78 (110)
T ss_pred -------------------------c--------------------c--C--------HHHhcCCCCeEECCCCcHHHHH
Confidence 0 0 0 0112456788999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+.|.+++.+++||+|++|+++|+||+.||++
T Consensus 79 ~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 79 RKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 9999999999999999899999999999975
No 26
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=3.4e-12 Score=103.89 Aligned_cols=96 Identities=26% Similarity=0.399 Sum_probs=82.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
.++++++++|+.+|++.|.++++.++||+|++ +++++|+++..|+...+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~------------~~~~~Givt~~Dl~~~~~------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR------------KQQFVGMLTITDFILILR------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC------------CCEEEEEEEHHHHhhhee------------------
Confidence 47899999999999999999999999999963 268999999999986421
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+.++.|+++|.+|++.|. +++++++|.+.+ +++.+|+||++|++++
T Consensus 52 ---------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------------------~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ---------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS--------------------TGTGLYILTSRRILKF 98 (98)
T ss_pred ---------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC--------------------CCCceEEeehhhhhcC
Confidence 678999999999999999 899999998632 1467899999999863
No 27
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.6e-12 Score=107.64 Aligned_cols=125 Identities=20% Similarity=0.323 Sum_probs=88.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|+++|.+.++ +++||+|++|+++|+|| .+|++.++.......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~G~it-------------------~~dl~~~~~~~~~~~---- 56 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGI--SRLPVVDDNGKLTGIVT-------------------RHDIVDFVVRDRDKA---- 56 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCC--CEEEEECCCCcEEEEEE-------------------HHHHHHHHhhhhhhc----
Confidence 56789999999999999999998 99999999999999954 555554221000000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. +.... . .+. . .......+|..++++|.+++++.+++.
T Consensus 57 ----~~--~~~~~-----~--------------------~~~----~------~~~~~~~~~~~~~~~v~~~~~l~~~l~ 95 (128)
T cd04632 57 ----RT--GDRSG-----E--------------------KER----M------LDLPVYDAMSSPVITASPNDSVRDAVD 95 (128)
T ss_pred ----ch--hhhhh-----h--------------------hhh----h------ccCcHHHHhcCCCceECCCCcHHHHHH
Confidence 00 00000 0 000 0 001122356778999999999999999
Q ss_pred HHHHcCCcEEEEEc--CCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIE--DDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd--~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++++.+||++ ++|+++|+||+.||+++
T Consensus 96 ~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 96 RMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred HHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 99999999999995 46899999999999863
No 28
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.38 E-value=4.9e-12 Score=104.67 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=88.2
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|++.|.+.+. +.+||+|++|+++|+ ++.+|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~dl~~~~~~~-------- 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKH--GSALVVDRDGGVVGI-------------------ITLPDLLRALEAD-------- 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCC--cEEEEEcCCCCEEEE-------------------EEHHHHHHHHhcc--------
Confidence 46788999999999999999888 999999999999999 5566665421100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..++ ... ....|..++++|.+++++.++++
T Consensus 53 ----------------------~~~~--------------------~~~--------~~~~~~~~~~~v~~~~~l~~~l~ 82 (115)
T cd04593 53 ----------------------EAGE--------------------PSA--------VDEVATPPLLTVHPDEPLAHALD 82 (115)
T ss_pred ----------------------cccc--------------------ccc--------HHHhccCCceEECCCCCHHHHHH
Confidence 0000 000 01235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCC--CcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDD--CTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~--~~lvGvVt~~DIl~~ 388 (397)
+|.+++.+++||+|++ |+++|+||.+||+++
T Consensus 83 ~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 83 RMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 9999999999999987 799999999999864
No 29
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.38 E-value=1.5e-12 Score=112.87 Aligned_cols=137 Identities=23% Similarity=0.293 Sum_probs=96.6
Q ss_pred cHHHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 166 TQEDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 166 Tq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
|-..|+++|-++.+ ..+.++ .+|+.+++++.+++++.+|+++|.++++ |-+||+++ |++||-||
T Consensus 49 t~k~Il~aL~e~e~--~~ita~-----~iM~spvv~v~pdDsi~~vv~lM~~~g~--SQlPVi~~-~k~VGsIt------ 112 (187)
T COG3620 49 TVKRILEALEEAEK--TRITAK-----TIMHSPVVSVSPDDSISDVVNLMRDKGI--SQLPVIEE-DKVVGSIT------ 112 (187)
T ss_pred HHHHHHHHHHHhhc--ceEeHh-----hhccCCeeEECchhhHHHHHHHHHHcCC--ccCceeeC-Ceeeeeec------
Confidence 33456666655433 112222 3899999999999999999999999999 99999997 79999855
Q ss_pred cchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCC
Q 016003 246 CDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSG 325 (397)
Q Consensus 246 ~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (397)
++|+....-.+ .+++ ++.
T Consensus 113 -------------E~~iv~~~le~--~e~i-----------------------------------------------~~~ 130 (187)
T COG3620 113 -------------ENDIVRALLEG--MESI-----------------------------------------------RSL 130 (187)
T ss_pred -------------HHHHHHHHhcc--ccch-----------------------------------------------hhh
Confidence 45544311000 0000 011
Q ss_pred CccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 326 KHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
..+.+|..+..+++|+.++..+-.++-.| .-+-|++ +|+++||||+.||++.+.+
T Consensus 131 --------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e-~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 131 --------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVE-NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred --------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEe-CCceEEEEeHHHHHHHHhc
Confidence 12357888999999999998766666554 4577775 5899999999999998764
No 30
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.38 E-value=7.9e-12 Score=102.48 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=86.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++++.++.++.+|++.|.+.+. +.+||+|++ |+++|+ ++..|++.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~--~~~~v~~~~~~~~~G~-------------------v~~~~l~~~~~~-------- 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGH--SRFPVYDGDLDNIIGV-------------------VHVKDLLRALAE-------- 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCC--ceEEEECCCCceEEEE-------------------EEHHHHHHHHHc--------
Confidence 57889999999999999999888 999999998 999999 556666542210
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.+. . .. ... +..++.++.+++++.+++
T Consensus 53 ------------------------~~~-------------------~-~~--------~~~-~~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 53 ------------------------GEE-------------------D-LD--------LRD-LLRPPLFVPESTPLDDLL 79 (111)
T ss_pred ------------------------CCC-------------------c-CC--------HHH-HhcCCeecCCCCcHHHHH
Confidence 000 0 00 001 124678999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+.|.+++.+++||+|++|+++|+||+.|+++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 80 EEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 9999999999999999899999999999985
No 31
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.38 E-value=7.5e-12 Score=101.74 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=84.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.+. +.+||+|++|+++|++ +..|++....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~--~~~~v~d~~g~~~Giv-------------------~~~dl~~~~~---------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDL--RALTVVDADGQPLGFV-------------------TRREAARASG---------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCC--CEEEEECCCCCEEEEE-------------------eHHHHHHhcc----------
Confidence 56789999999999999998888 9999999889999994 4555543100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..+ ...|.....++.+++++.++++
T Consensus 51 --------~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 75 (106)
T cd04582 51 --------GCC-----------------------------------------------GDHAEPFKVTVSVDDDLRIVLS 75 (106)
T ss_pred --------cch-----------------------------------------------hhhcccCCEEECCCCCHHHHHH
Confidence 000 0123446678999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++++.+||+|++|+++|+||+.|+++
T Consensus 76 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 76 RMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999899999999999985
No 32
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=6.8e-12 Score=107.97 Aligned_cols=134 Identities=14% Similarity=0.195 Sum_probs=90.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++++++++.+|++.|.+.+. +++||+|++|+++|+|+..|| +.+..... ...+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~--~~l~V~d~~~~~~Giv~~~dl-------------------~~~~~~~~-~~~~~- 58 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGV--GRVIVVDDNGKPVGVITYRDL-------------------AFAEFEDN-ERGLP- 58 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCC--CcceEECCCCCEEEEEeHHHH-------------------HHHhhccc-ccccc-
Confidence 57789999999999999999988 999999999999999664444 43221000 00000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+.. + .+...... +..........+...+|..++.++.+++++.+++.
T Consensus 59 ---------~~~-~--~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 105 (135)
T cd04621 59 ---------KKS-I--KMKRKAGQ---------------------KRYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAK 105 (135)
T ss_pred ---------hhh-h--hhhhhccc---------------------ccccccccccccHHHhcCCCCeEECCCCCHHHHHH
Confidence 000 0 00000000 00000001112233467788999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|+ |+++|+||.+||+++
T Consensus 106 ~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 106 LMLEANISGLPVVDN-DNIVGVITKTDICRE 135 (135)
T ss_pred HHHHcCCCEEEEEeC-CEEEEEEEHHHHhhC
Confidence 999999999999998 899999999999863
No 33
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=7.4e-12 Score=104.42 Aligned_cols=121 Identities=21% Similarity=0.303 Sum_probs=89.3
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|++.|.+.++ +.+||+|++|+++|++ +.+|++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~G~v-------------------~~~~l~~~~~~~~~~----- 55 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRI--RHLPVVNEDGKLVGLL-------------------TQRDLLRAALSSLSD----- 55 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCc--ccccEECCCCCEEEEE-------------------EHHHHHHHhcccccc-----
Confidence 46789999999999999999999 9999999989999995 455555422100000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..... . .+........++..++++|.+++++.++++
T Consensus 56 ---------~~~~~---~--------------------------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~ 91 (122)
T cd04803 56 ---------NGEES---L--------------------------------TKERDVPVAEVMKTDVLTVTPDTPLREAAE 91 (122)
T ss_pred ---------ccccc---c--------------------------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHH
Confidence 00000 0 000001112345678899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|++|+++|+||..||+++
T Consensus 92 ~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 92 IMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred HHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 9999999999999998899999999999863
No 34
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1e-11 Score=101.74 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=87.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++++++++.++.++++.|.+++. +.+||+|++|+++|++ +..|++..+...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~Giv-------------------~~~~l~~~~~~~-------- 52 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNI--GAVVVVDDGGRLVGIF-------------------SERDIVRKVALR-------- 52 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEEE-------------------ehHHHHHHHhhc--------
Confidence 57789999999999999999888 9999999989999994 566665421100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. . .. .....+.|..++.++.+++++.++++
T Consensus 53 -----------------------~~--------------~------~~------~~~~~~~~~~~~~~v~~~~~~~~~l~ 83 (113)
T cd04623 53 -----------------------GA--------------S------AL------DTPVSEIMTRNVITVTPDDTVDEAMA 83 (113)
T ss_pred -----------------------CC--------------C------cc------ccCHHHhcCCCcEEECCCCcHHHHHH
Confidence 00 0 00 00012345668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|+ |+++|+||..||++
T Consensus 84 ~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 84 LMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 999999999999998 89999999999986
No 35
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.3e-11 Score=101.86 Aligned_cols=109 Identities=22% Similarity=0.328 Sum_probs=85.7
Q ss_pred eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHH
Q 016003 199 VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRV 278 (397)
Q Consensus 199 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~ 278 (397)
.+++.+++++.+|++.|.+.+. ..++|+|++|+++|++ +.+|++..+...
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~v-------------------~~~dl~~~~~~~--------- 53 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNAL--RIVLVVDENGRLLGTV-------------------TDGDIRRALLKG--------- 53 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCc--CEEEEECCCCCEEEEE-------------------EcHHHHHHHhcC---------
Confidence 5678999999999999998888 9999999999999995 455554311000
Q ss_pred HHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHH
Q 016003 279 VKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQ 358 (397)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~ 358 (397)
. . . ... ...+|..++.++.+++++.+++++
T Consensus 54 ---------~-------~-----~---------------------~~~--------v~~~~~~~~~~v~~~~~l~~~~~~ 83 (113)
T cd04607 54 ---------L-------S-----L---------------------DDP--------VSEVMNRNPITAKVGSSREEILAL 83 (113)
T ss_pred ---------C-------C-----c---------------------CCC--------HHHhhcCCCEEEcCCCCHHHHHHH
Confidence 0 0 0 000 112356678899999999999999
Q ss_pred HHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 359 AIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 359 m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
|.+++.+++||+|++|+++|+||.+||+.
T Consensus 84 ~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 84 MRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999998899999999999974
No 36
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=9e-12 Score=102.15 Aligned_cols=109 Identities=24% Similarity=0.300 Sum_probs=86.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+..++.+++++.+|++.|.+.+. +.+||+|++|+++|+| +..|+...+...
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~--~~~~V~~~~~~~~G~v-------------------~~~~l~~~~~~~-------- 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQ--HEFPVVDGDGHLVGLL-------------------TRDDLIRALAEG-------- 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCC--CcceEECCCCcEEEEe-------------------eHHHHHHHHHhc--------
Confidence 46789999999999999988888 9999999989999994 556655422100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.+ ... ...+|..+++++.+++++.++++
T Consensus 53 ------------------------~~--------------------~~~--------v~~~~~~~~~~i~~~~~~~~~~~ 80 (111)
T cd04639 53 ------------------------GP--------------------DAP--------VRGVMRRDFPTVSPSATLDAVLR 80 (111)
T ss_pred ------------------------CC--------------------CCc--------HHHHhcCCCcEECCCCcHHHHHH
Confidence 00 000 01235568899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++|+++|+||..||.+
T Consensus 81 ~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 81 LMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999998889999999999975
No 37
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=5.1e-12 Score=104.37 Aligned_cols=110 Identities=24% Similarity=0.218 Sum_probs=84.0
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcC-CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchh
Q 016003 197 TDVVAVDYHSPASLALEAISRSL-FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDL 275 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l 275 (397)
+++.++++++++.+|++.|.+++ . +.+||+|++|+++|+|+ .+|++......
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~-------------------~~dl~~~~~~~------ 53 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQ--RRFVVVDNEGRYVGIIS-------------------LADLRAIPTSQ------ 53 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCc--eeEEEEcCCCcEEEEEE-------------------HHHHHHHHHhh------
Confidence 35778999999999999997765 7 99999999999999954 55555421000
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC--CccEEeCCCCcHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR--AEAIVCHPTSSLM 353 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~it~~~~~sl~ 353 (397)
+ .. ... ..+|. .++.++.+++++.
T Consensus 54 ------~-------------~~---------------------------~~v--------~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 54 ------W-------------AQ---------------------------TTV--------IQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred ------c-------------cc---------------------------cch--------hhhhcccccceEECCCCcHH
Confidence 0 00 000 01122 2467999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++++.|.+++.+++||+|++|+++|+||..||++
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 80 EVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 9999999999999999998889999999999975
No 38
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=8.3e-12 Score=103.05 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=86.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++++++++.+|++.|...++ +.+||+|++|+++|+ ++.+|++...... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~~~~~-~------ 53 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGY--SAIPVLDKEGKYVGT-------------------ISLTDILWKLKGL-E------ 53 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCC--ceeeeECCCCcEEEE-------------------EeHHHHHHHhhcc-C------
Confidence 57899999999999999999988 999999998999999 4566665422100 0
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..... .+. . ......|..++.++.+++++.+++.
T Consensus 54 ----------~~~~~-~~~---------------------------~--------~~v~~~~~~~~~~v~~~~~l~~a~~ 87 (116)
T cd04643 54 ----------NLDLE-RLV---------------------------D--------LKVIDVMNTDVPVIIDDADIEEILH 87 (116)
T ss_pred ----------chhHH-HHh---------------------------C--------CcHHHHhcCCCceecCCCCHHHHHH
Confidence 00000 000 0 0011245668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++ .+||+|++|+++|+||..||+++
T Consensus 88 ~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 88 LLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred HHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 998865 59999998999999999999874
No 39
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.1e-11 Score=101.81 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=86.2
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.+++++.++.+|++.|.+.++ +.+||+|++|+++|++ +..|++.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~v-------------------~~~dl~~~~~~~-------- 52 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNT--NEIIVKDNEEKLKGVV-------------------TFTDILDLDLFE-------- 52 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCC--CeEEEEcCCCCEEEEE-------------------ehHHhHHHHhhc--------
Confidence 57789999999999999999988 9999999999999994 455554321000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. . . . .+....|..+++++.+++++.+++.
T Consensus 53 ----~------~------~---------------------------~--------~~v~~~~~~~~~~v~~~~~l~~~~~ 81 (111)
T cd04626 53 ----S------F------L---------------------------E--------KKVFNIVSQDVFYVNEEDTIDEALD 81 (111)
T ss_pred ----c------c------c---------------------------c--------CcHHHHhcCCcEEEcCCCcHHHHHH
Confidence 0 0 0 0 0011235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|+ |+++|+||+.||+.
T Consensus 82 ~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 82 IMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 999999999999998 89999999999974
No 40
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.35 E-value=1.4e-11 Score=100.31 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=86.3
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.++ ..+||+|++|+++|++ +..|++.....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~v-------------------~~~dl~~~~~~--------- 52 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKV--DSLLVVDKDNKLLGIV-------------------SLESLEQAYKE--------- 52 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCC--ceEEEEcCCCcEEEEE-------------------EHHHHHHHhhc---------
Confidence 46789999999999999998888 9999999989999994 45665541100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. .+ ...|...+.++++++++.++++
T Consensus 53 -----------------------~~-----------------------~v--------~~~~~~~~~~v~~~~~~~~~~~ 78 (109)
T cd04583 53 -----------------------AK-----------------------SL--------EDIMLEDVFTVQPDASLRDVLG 78 (109)
T ss_pred -----------------------CC-----------------------cH--------hHhhcCCceEECCCCcHHHHHH
Confidence 00 00 0124557789999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 79 LVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999899999999999985
No 41
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.1e-11 Score=103.27 Aligned_cols=122 Identities=22% Similarity=0.277 Sum_probs=89.3
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++++++++.+|++.|...+. +.+||+|++|+++|+++..||.++. +.. ...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~~~~l~~~~-----------------~~~--~~~~~~- 58 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGF--TGLPVVQKAGELIGIITRRDIIRAG-----------------SVR--TSVEDQ- 58 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCC--CcccEECCCCcEEEEEEcHHHHhhc-----------------ccc--ccccch-
Confidence 357889999999999999998888 9999999999999996655544310 000 000000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.. . . ... ..+..++|..++++|.+++++.+++
T Consensus 59 -----~~-----~------~--------------------------~~~------~~~~~~~~~~~~~~v~~~~~l~~~~ 90 (122)
T cd04635 59 -----QR-----T------Q--------------------------TKA------SPTVEKIMSTPVYSVTPDDSIATAV 90 (122)
T ss_pred -----hh-----h------h--------------------------hhc------cCcHHHHhcCCCeeECCCCCHHHHH
Confidence 00 0 0 000 0011234567889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+.|.+++.+++||+|++|+++|++|..|++++
T Consensus 91 ~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 91 ELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred HHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 99999999999999998999999999999863
No 42
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.4e-11 Score=102.99 Aligned_cols=116 Identities=22% Similarity=0.186 Sum_probs=88.5
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++.++||++. +++++|+++..|++.++.+... .....++..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-------------~~~~~Giv~~~dl~~~~~~~~~-----~~~~~~~~~ 63 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-------------NGKVVDVYSRFDVINLAKEGAY-----NNLDLTVGE 63 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-------------CCeEEEEEeHHHHHHHHhcCcc-----ccccCCHHH
Confidence 6789999999999999999999999999986 3689999999999987643211 011122332
Q ss_pred hc-cCC-CCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LL-PQL-LPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm-~~~-~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
.+ ... ...++..+.+++++.++++.|. +++++++|++++ ++.+|+||+.|+++|
T Consensus 64 ~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~---------------------~~~~Givt~~di~~~ 120 (120)
T cd04641 64 ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN---------------------KRVEGIISLSDILQF 120 (120)
T ss_pred HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCC---------------------CCEEEEEEHHHhhcC
Confidence 21 110 1123789999999999999999 799999987532 357899999999875
No 43
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=8.6e-12 Score=106.56 Aligned_cols=134 Identities=28% Similarity=0.311 Sum_probs=89.4
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.++.++.+|++.|.+.++ ..+||+|++|+++|+|+.. |+......... ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~Vvd~~~~~~Gvi~~~-------------------dl~~~~~~~~~-~~~- 58 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHI--SGLPVVDDDGRLVGIVSEG-------------------DLLRRAELGTE-RRR- 58 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCC--CCceEECCCCCEEEEeeHH-------------------HHHHHhcccCc-chh-
Confidence 568899999999999999999988 9999999999999996544 44332110000 000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
..++. ..... ......+. ... ......+|..+++++.+++++.+++
T Consensus 59 ---~~~~~---------~~~~~--------------~~~~~~~~--~~~------~~~v~~~~~~~~~~v~~~~~~~~~~ 104 (135)
T cd04586 59 ---ARWLD---------LLAGA--------------EELAAAFV--RSH------GRKVADVMTRPVVTVGEDTPLAEVA 104 (135)
T ss_pred ---hhHHH---------Hhcch--------------HHHHHHHH--Hhc------CCCHHHHhCCCceEeCCCCcHHHHH
Confidence 00000 00000 00000000 000 0112234667899999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
..|.+++.+++||+| +|+++|+||+.||+++
T Consensus 105 ~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~~ 135 (135)
T cd04586 105 ELMEEHRIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred HHHHHcCCCccCEec-CCEEEEEEEhHhhhcC
Confidence 999999999999999 7999999999999863
No 44
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.33 E-value=7.8e-12 Score=132.72 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=99.4
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..++++ +|++++.++++++++.++++.|.+++. +.+||+|++|+++|+| +.+|+++.
T Consensus 446 ~~~V~d--im~~~~~~v~~~~tl~ea~~~l~~~~~--~~~~VvD~~g~lvGiV-------------------t~~dL~~~ 502 (574)
T PRK01862 446 TTQMRE--LIQPAQTVVPPTASVADMTRVFLEYPV--KYLYVVDDDGRFRGAV-------------------ALKDITSD 502 (574)
T ss_pred hCcHHH--HhcCCCceeCCCCCHHHHHHHHHhCCC--ceEEEEcCCCeEEEEE-------------------EHHHHHHH
Confidence 445555 788999999999999999999999988 9999999999999995 45565541
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
... . ... + .....++|..++.+
T Consensus 503 l~~----------------------------~--~~~--------------~--------------~~~v~dim~~~~~~ 524 (574)
T PRK01862 503 LLD----------------------------K--RDT--------------T--------------DKTAADYAHTPFPL 524 (574)
T ss_pred hhc----------------------------c--ccc--------------c--------------cchHHHhccCCCee
Confidence 100 0 000 0 00012356778899
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCC--CcEEEEEehHHHHHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDD--CTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~--~~lvGvVt~~DIl~~l~~~ 392 (397)
+++++++.+++++|.+++++++||||++ ++++|+||+.||++++.+.
T Consensus 525 v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 525 LTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred ECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHhh
Confidence 9999999999999999999999999987 4899999999999998663
No 45
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.8e-11 Score=100.71 Aligned_cols=109 Identities=21% Similarity=0.274 Sum_probs=86.7
Q ss_pred eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhh-ccCCCCchhHH
Q 016003 199 VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYI-DCGGPPEDLVR 277 (397)
Q Consensus 199 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~-~~~~~~~~l~~ 277 (397)
+.++.+++++.+|++.|.+.++ +.+||+|++|+++|++ +..|++... +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~vvd~~~~~~G~v-------------------~~~dl~~~~~~~--------- 52 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGS--RALPVVDDKKRLVGII-------------------TRYDVLSYALES--------- 52 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCC--ceEeEEcCCCCEEEEE-------------------EHHHHHHhhhhh---------
Confidence 6778999999999999999988 9999999989999995 455655411 10
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. .+. . .+...+|..++.++.+++++.+++.
T Consensus 53 ------------~---~~~---------------------------~--------~~i~~~~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04615 53 ------------E---ELK---------------------------D--------AKVREVMNSPVITIDANDSIAKARW 82 (113)
T ss_pred ------------h---hhc---------------------------C--------CcHHHhccCCceEECCCCcHHHHHH
Confidence 0 000 0 0011235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++|+++|+||..||++
T Consensus 83 ~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 83 LMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999899999999999975
No 46
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.33 E-value=1.7e-11 Score=100.65 Aligned_cols=112 Identities=24% Similarity=0.329 Sum_probs=88.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.+++++.++.++++.|.+.+. +.+||+|++|+++|+ ++..|++.++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~~i~~~~~~~-------- 53 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGL--GMTAVVDEDGRLVGI-------------------FTDGDLRRALEKG-------- 53 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCc--cEEEEEcCCCCEEEE-------------------echHHHHHHHhcc--------
Confidence 46778999999999999988878 999999999999999 5566666532100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. + + . ......|..+..++.+++++.++++
T Consensus 54 -----------------~~-----~--------------~------~--------~~v~~~~~~~~~~v~~~~~~~~~~~ 83 (114)
T cd04604 54 -----------------LD-----I--------------L------T--------LPVADVMTRNPKTIDPDALAAEALE 83 (114)
T ss_pred -----------------Cc-----c--------------c------c--------CCHHHhhccCCeEECCCCcHHHHHH
Confidence 00 0 0 0 0011235667889999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+++.+++||+|++++++|+||..||+++
T Consensus 84 ~~~~~~~~~~~Vv~~~~~~iG~it~~di~~~ 114 (114)
T cd04604 84 LMEENKITALPVVDDNGRPVGVLHIHDLLRA 114 (114)
T ss_pred HHHHcCCCEEEEECCCCCEEEEEEHHHhhcC
Confidence 9999999999999988999999999999863
No 47
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.2e-11 Score=104.49 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=82.3
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|..+++ ..+||+|++|+++|+++ ..|++...-. +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~Giv~-------------------~~dl~~~~~~--------~ 52 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGV--RLLLVVDSDDNFIGVIT-------------------AVDLLGEEPI--------K 52 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCC--cEEEEEcCCCcEEEEEE-------------------HHHHhhChhh--------H
Confidence 46789999999999999998888 99999999899999955 5555431000 0
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEe------CCCCc
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVC------HPTSS 351 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~------~~~~s 351 (397)
.+ .... ..+ . ......+|..+.+++ .++++
T Consensus 53 ----~~-----------~~~~-~~~--------------~--------------~~~v~~im~~~~~~~~~~~~~~~~~~ 88 (126)
T cd04640 53 ----RI-----------QEGG-ISR--------------S--------------ELTVADVMTPKEDLKALDLEELENAS 88 (126)
T ss_pred ----HH-----------HHcC-CCc--------------h--------------heEHHHhcCchhhhccccHHHhccCc
Confidence 00 0000 000 0 000112344443333 36899
Q ss_pred HHHHHHHHHHcCCcEEEEEcCC-CcEEEEEehHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDD-CTLTGIVTFSDLLK 387 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~-~~lvGvVt~~DIl~ 387 (397)
+.+++++|.+++.+++||+|++ |+++|+||++||++
T Consensus 89 l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 89 VGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 9999999999999999999987 79999999999986
No 48
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.1e-11 Score=101.88 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=86.7
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.++ +.+||+|++|+++|+|+ ..|++..+-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~G~v~-------------------~~~l~~~~~~~-------- 52 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKI--SGGPVVDDNGNLVGFLS-------------------EQDCLKQLLES-------- 52 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCC--CCccEECCCCeEEEEee-------------------hHHHHHHhhhh--------
Confidence 56789999999999999998888 99999999999999954 55554311000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. ... . .. ....+.|..+++++.+++++.++++
T Consensus 53 ----~------------~~~----~--------------------~~--------~~v~~~~~~~~~~v~~~~~l~~~~~ 84 (114)
T cd04629 53 ----S------------YHC----D--------------------GV--------ATVRDIMTTEVLTVSPDDSIVDLAQ 84 (114)
T ss_pred ----h------------hcc----C--------------------CC--------ccHHHHhccCceEECCCCcHHHHHH
Confidence 0 000 0 00 0011235667899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|+ |+++|+||..||+++
T Consensus 85 ~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 85 LMLKAKPKRYPVVDD-GKLVGQISRRDVLRA 114 (114)
T ss_pred HHHHhCCCccCEEEC-CEEEEEEEHHHHhcC
Confidence 999999999999998 899999999999863
No 49
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=3.6e-11 Score=98.70 Aligned_cols=110 Identities=19% Similarity=0.289 Sum_probs=87.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.+++++.++.+|++.|.+.+. +.+||+|++|+++|+ ++..|++..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~~l~~~~~~~-------- 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENV--GSVVVVDPDERPIGI-------------------VTERDIVRAVAAG-------- 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCC--CEEEEECCCCCEEEE-------------------eeHHHHHHHHhcc--------
Confidence 46789999999999999998888 999999999999999 4566665422100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.++ ... ...+|..++.+|.+++++.+++.
T Consensus 53 -----------------------~~~--------------------~~~--------v~~~~~~~~~~v~~~~~~~~~~~ 81 (112)
T cd04624 53 -----------------------IDL--------------------DTP--------VSEIMTRDLVTVDPDEPVAEAAK 81 (112)
T ss_pred -----------------------CCC--------------------ccC--------HHHhccCCCEEECCCCcHHHHHH
Confidence 000 000 11235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+|.+++++.+||+|++|+++|++|+.|+++
T Consensus 82 ~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 82 LMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 999999999999999899999999999986
No 50
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.32 E-value=1.9e-11 Score=99.74 Aligned_cols=107 Identities=25% Similarity=0.341 Sum_probs=83.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.+++++.++++.|.+.+. +++||+|++|+++|+++..+|.+. ... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~~~~l~~~-------------------~~~---~---- 53 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGI--SGLPVVDDDGKLVGIVTNRDLRFE-------------------TDL---D---- 53 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCC--ceEEEEcCCCEEEEEEEhhHeeec-------------------ccC---C----
Confidence 357789999999999999998888 999999998999999664443320 000 0
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCC-CCcHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHP-TSSLMAV 355 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~-~~sl~~v 355 (397)
.. ...+|...+.++.+ ++++.++
T Consensus 54 ---------~~-----------------------------------------------v~~~~~~~~~~~~~~~~~l~~~ 77 (110)
T cd04601 54 ---------KP-----------------------------------------------VSEVMTPENLLTTVEGTSLEEA 77 (110)
T ss_pred ---------CC-----------------------------------------------HHHhcccCceEEecCCCCHHHH
Confidence 00 00123344556666 9999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+++|.+++.+++||+|++|+++|+||.+|+++
T Consensus 78 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 78 LELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 99999999999999998899999999999986
No 51
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=2.4e-11 Score=100.43 Aligned_cols=111 Identities=20% Similarity=0.312 Sum_probs=84.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcC-CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSL-FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++.++.++.++.+|++.|...+ . ..++|+| +|+++|+ ++..|++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~-~~~~~G~-------------------v~~~dl~~~~~~~------- 52 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDS--SCVLVVE-KGRLLGI-------------------FTERDIVRLTAIG------- 52 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCC--ceEEEcC-CCcEEEE-------------------EeHHHHHHHHhcC-------
Confidence 4678999999999999998877 5 6677777 5899999 5667766522100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCC--CcHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPT--SSLMA 354 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~--~sl~~ 354 (397)
. . . + . .+....|..+++++.++ +++.+
T Consensus 53 -----------~-------~-----~--------------~------~--------~~i~~~~~~~~~~v~~~~~~~l~~ 81 (115)
T cd04620 53 -----------K-------D-----L--------------S------D--------LPIGEVMTQPVVTLQESEIQDIFT 81 (115)
T ss_pred -----------C-------C-----c--------------c------c--------cCHHHhcCCCcEEEecccccCHHH
Confidence 0 0 0 0 0 00112356678889887 78999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++++|.+++.+++||+|++|+++|+||..||+++
T Consensus 82 a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 82 ALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQV 115 (115)
T ss_pred HHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhcC
Confidence 9999999999999999998999999999999874
No 52
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.7e-11 Score=102.86 Aligned_cols=116 Identities=28% Similarity=0.466 Sum_probs=88.0
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCC---C
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLF---S 182 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l---~ 182 (397)
++.++.+++++.++++.|. +++++++|.+.+ .++..|+||+.|+++++.++.... .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~--------------------~~~~~Giv~~~dl~~~~~~~~~~~~~~~ 61 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE--------------------SGEVIGILSQRRLVEFLWENARSFPGLD 61 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC--------------------CCcEEEEEEHHHHHHHHHHhHHhccchh
Confidence 4788999999999999998 578888887532 035678999999999875432111 1
Q ss_pred CCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 183 PIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 183 ~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
......+....+|..++.++.+++++.+|++.|.++++ +.+||+|++|+++|+||.+||.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~--~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 62 PLYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGI--SSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hhhhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCC--ceEEEECCCCcEEEEEeHHHhh
Confidence 10001122234678889999999999999999999999 9999999999999997766554
No 53
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.31 E-value=3.9e-11 Score=98.16 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=86.8
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++++++++.+|++.|.+.++ +.+||+|+ |+++|++ +..|++.....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~v-------------------~~~~l~~~~~~~------- 51 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHI--HGAPVVDD-GKLVGIV-------------------TLSDIAHAIARG------- 51 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCC--CEEEEeeC-CEEEEEE-------------------EHHHHHHHHhcc-------
Confidence 367889999999999999999988 99999998 9999994 455555421100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
++ . ......+..++.++.+++++.+++
T Consensus 52 -------------------------~~--------------------~--------~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 52 -------------------------LE--------------------L--------AKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred -------------------------cc--------------------c--------cCHHHHhcCCceEECCCCCHHHHH
Confidence 00 0 000123456889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+.|.+++++++||+|++|+++|+||..||++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999999899999999999985
No 54
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.31 E-value=2.6e-11 Score=100.53 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=87.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.++ ..+||+|+ |+++|+|+ ..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~i~-------------------~~~l~~~~~~~-------- 51 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSI--RRLPVVDR-GKLVGIVT-------------------DRDLKLASPSK-------- 51 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCc--ceeeEecC-CeEEEEEe-------------------HHHHHHhhhcc--------
Confidence 56789999999999999999888 99999998 99999955 44444321100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.... .. + +..+ ... +.+...+|..+++++.+++++.+++.
T Consensus 52 ----------~~~~---~~-----~-------------~~~~------~~~---~~~~~~~~~~~~~~v~~~~~l~~~~~ 91 (122)
T cd04585 52 ----------ATTL---DI-----W-------------ELYY------LLS---KIKVSDIMTRDPITVSPDASVEEAAE 91 (122)
T ss_pred ----------cccc---cc-----h-------------hhhh------hhc---ccCHHHhccCCCeEeCCCCcHHHHHH
Confidence 0000 00 0 0000 000 01112346678999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|++|+++|+||..||+++
T Consensus 92 ~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 92 LMLERKISGLPVVDDQGRLVGIITESDLFRA 122 (122)
T ss_pred HHHHcCCCceeEECCCCcEEEEEEHHHhhhC
Confidence 9999999999999988999999999999863
No 55
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.1e-11 Score=100.01 Aligned_cols=104 Identities=24% Similarity=0.294 Sum_probs=82.1
Q ss_pred EEeCCCcHHHHHHHHHhcC-----CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchh
Q 016003 201 AVDYHSPASLALEAISRSL-----FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDL 275 (397)
Q Consensus 201 tv~~~~~~~~a~~~m~~~~-----i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l 275 (397)
++.+++++.++++.|.+++ . ..+||+|++|+++|+|+ .+|++..- .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvd~~~~~~G~v~-------------------~~~l~~~~-----~~-- 52 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETI--YYIYVVDEEGRLLGVVS-------------------LRDLLLAD-----PD-- 52 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccce--eEEEEECCCCCEEEEEE-------------------HHHHhcCC-----Cc--
Confidence 3678999999999998776 4 68999998899999954 44443200 00
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v 355 (397)
.+....+..++.++.+++++.++
T Consensus 53 ---------------------------------------------------------~~v~~~~~~~~~~i~~~~~~~~~ 75 (109)
T cd04606 53 ---------------------------------------------------------TPVSDIMDTDVISVSADDDQEEV 75 (109)
T ss_pred ---------------------------------------------------------chHHHHhCCCCeEEcCCCCHHHH
Confidence 00011245578999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
++.|.+++.+++||+|++|+++|+||..|+++++
T Consensus 76 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 76 ARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred HHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence 9999999999999999889999999999999863
No 56
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.30 E-value=2.1e-11 Score=100.20 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=86.1
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.++++.|.+++. +.+||+|+ |+++|+| +.+|++...-..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~v-------------------~~~dl~~~~~~~-------- 51 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRV--SCVLVMDG-NKLVGIF-------------------TSKDIALRVVAQ-------- 51 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCC--CeEEEEEC-CEEEEEE-------------------EhHHHHHHHHhc--------
Confidence 57789999999999999998888 99999998 9999994 455654311000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+.. . . ..+...+|..++.+|.+++++.+++.
T Consensus 52 ---------~~~---------------------------~-----~--------~~~v~~i~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04587 52 ---------GLD---------------------------P-----E--------STLVERVMTPNPVCATSDTPVLEALH 82 (113)
T ss_pred ---------CCC---------------------------c-----C--------cCCHHHhcCCCCeEEcCCCCHHHHHH
Confidence 000 0 0 00011245668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++|+++|+||..||+.
T Consensus 83 ~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 83 LMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 999999999999998899999999999975
No 57
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.30 E-value=2.9e-11 Score=99.21 Aligned_cols=112 Identities=29% Similarity=0.325 Sum_probs=88.7
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.+++++.++++.|...++ +.+||+|++|+++|+| +..|++.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~G~v-------------------~~~~l~~~~~~~------- 52 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPE--NNFPVVDDDGRLVGIV-------------------SLDDIREILFDP------- 52 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCC--cceeEECCCCCEEEEE-------------------EHHHHHHHHhcc-------
Confidence 357889999999999999999888 9999999989999994 456665422100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
..+ + ..+...+|..++.++.+++++.+++
T Consensus 53 -----------------------~~~--------------~--------------~~~v~~~~~~~~~~v~~~~~~~~~~ 81 (114)
T cd04613 53 -----------------------SLY--------------D--------------LVVASDIMTKPPVVVYPEDSLEDAL 81 (114)
T ss_pred -----------------------ccc--------------c--------------cEEHHHhccCCCcEEcCCCCHHHHH
Confidence 000 0 0001124567889999999999999
Q ss_pred HHHHHcCCcEEEEEcC-CCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIED-DCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~-~~~lvGvVt~~DIl~ 387 (397)
..|.+++.+++||+|+ +++++|+||..||++
T Consensus 82 ~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 82 KKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 9999999999999998 789999999999986
No 58
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.30 E-value=2.2e-11 Score=118.67 Aligned_cols=126 Identities=18% Similarity=0.300 Sum_probs=99.8
Q ss_pred CccCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 184 IPALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 184 l~~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
+...++.+ +|++ +++++.+++++.++++.+..++. +.+||++++ ++++|+ ++.+
T Consensus 64 l~~~~V~d--iMtpr~~i~~l~~~~sl~e~~~~i~~~~~--sr~PV~~~~~d~iiGi-------------------v~~k 120 (292)
T PRK15094 64 IADQRVRD--IMIPRSQMITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHIEGI-------------------LMAK 120 (292)
T ss_pred cCCCEEeE--EccchHHEEEEeCCCCHHHHHHHHHhcCC--cEEEEecCCCCcEEEE-------------------EEHH
Confidence 34566766 7986 79999999999999999999999 999999976 699999 5577
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|++.+.... . .... ...+|
T Consensus 121 Dll~~~~~~--------------------------------~--------------------~~~~--------l~~l~- 139 (292)
T PRK15094 121 DLLPFMRSD--------------------------------A--------------------EAFS--------MDKVL- 139 (292)
T ss_pred HHHhHhhcc--------------------------------C--------------------CcCC--------HHHHc-
Confidence 776422100 0 0000 01123
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
.+++++.++.++.+++.+|.+++.|.++|+|+.|.++|+||+.||+..+...+
T Consensus 140 r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 140 RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence 35669999999999999999999999999999899999999999999998653
No 59
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.30 E-value=4.5e-11 Score=98.64 Aligned_cols=112 Identities=28% Similarity=0.453 Sum_probs=90.4
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
++.++++++.+++++.+|+..|.++++ +++||++.. +++|+ ++.+|++.......
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~--~~~~v~~~~-~l~Gi-------------------it~~di~~~~~~~~--- 58 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGV--SAVPVVDDG-KLVGI-------------------ITERDILRALAAGG--- 58 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCC--CEEEEeeCC-EEEEE-------------------EEHHHHHHHHhccC---
Confidence 345789999999999999999999999 999999854 79999 56777776331100
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
. ... ....+|+.+++++.++.++.
T Consensus 59 ----------------------~--------------------------~~~--------~v~~v~~~~~~~~~~~~~~~ 82 (117)
T COG0517 59 ----------------------K--------------------------RLL--------PVKEVMTKPVVTVDPDTPLE 82 (117)
T ss_pred ----------------------C--------------------------ccc--------cHHHhccCCcEEECCCCCHH
Confidence 0 000 01235677999999999999
Q ss_pred HHHHHHHH-cCCcEEEEEcCCC-cEEEEEehHHHH
Q 016003 354 AVMIQAIA-HRVTYVWVIEDDC-TLTGIVTFSDLL 386 (397)
Q Consensus 354 ~v~~~m~~-~~i~rl~VVd~~~-~lvGvVt~~DIl 386 (397)
+++..|.+ ++++++||+|+++ +++|++|.+||+
T Consensus 83 ~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 83 EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 99999999 7999999999986 999999999984
No 60
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.30 E-value=3.4e-11 Score=98.42 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=87.3
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.+++++.++++.|.+.+. +.+||+|+ |+++|++ +..|+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~v-------------------~~~dl~~~~~~-------- 50 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERH--RGYPVVDD-GRLVGIV-------------------TLADIRRVPAE-------- 50 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCC--CcceEeeC-CeEEEEE-------------------EHHHHHHHHhc--------
Confidence 357789999999999999998888 99999998 9999994 45555431100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.+. + . ....+.|..++.+|.+++++.+++
T Consensus 51 ------------------------~~~-------------~------~--------~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 51 ------------------------GRE-------------A------T--------VLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred ------------------------Ccc-------------c------c--------cCHHHhccCCCeEECCCCCHHHHH
Confidence 000 0 0 001123567889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++|.+++.+++||+|++|+++|+||..||+++
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~~ 111 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhhC
Confidence 99999999999999988999999999999863
No 61
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.29 E-value=4.3e-11 Score=98.10 Aligned_cols=110 Identities=22% Similarity=0.349 Sum_probs=85.8
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.+++++.++.+|++.|.+.+. +.+||+|+ |+++|+| +..|++.+....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~--~~i~V~~~-~~~~G~v-------------------~~~~l~~~~~~~------- 51 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRV--SSLLVVDD-GRLVGIV-------------------TDRDLRNRVVAE------- 51 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCC--CeEEEEEC-CEEEEEE-------------------EhHHHHHHHhcc-------
Confidence 357889999999999999998888 99999998 9999995 455555411000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
+.. . . .+...++..+++++.+++++.+++
T Consensus 52 ----------~~~------~---------------------------~--------~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 52 ----------GLD------P---------------------------D--------TPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred ----------CCC------c---------------------------c--------CCHHHHhCCCCeEECCCCcHHHHH
Confidence 000 0 0 001123566889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++|.+++.+++||+|+ |+++|+||..||++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 9999999999999998 89999999999985
No 62
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.29 E-value=1.8e-11 Score=127.15 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=86.7
Q ss_pred EEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 200 VAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 200 ~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++++++++.+|++.|.++++ +++||||+ +|+++|+|| .+|++.....
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~--~~vpVVD~~~~~gkLvGIVT-------------------~~DLr~~~~~-------- 158 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGH--STVAVTEDGTAHGKLLGIVT-------------------SRDYRISRMS-------- 158 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCC--CeEEEEeCCCcCCEEEEEEE-------------------cHHhhccccC--------
Confidence 589999999999999999999 99999997 689999965 4444320000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC--ccEEeCCCCcHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA--EAIVCHPTSSLMA 354 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~~~~sl~~ 354 (397)
. ..+..++|+. +++++++++++.+
T Consensus 159 -------------------~-----------------------------------~~~V~dIMt~~~~~itv~~d~~l~e 184 (502)
T PRK07107 159 -------------------L-----------------------------------DTKVKDFMTPFEKLVTANEGTTLKE 184 (502)
T ss_pred -------------------C-----------------------------------CCCHHHHhCCCCCeEEECCCCcHHH
Confidence 0 0001124554 7899999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
++++|.++++++|||||++++|+|+||+.||++.-
T Consensus 185 Al~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 185 ANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 99999999999999999989999999999999864
No 63
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=4.7e-11 Score=97.08 Aligned_cols=106 Identities=23% Similarity=0.374 Sum_probs=85.3
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++..+.++.++++.|...+. +.+||+|+ |+++|+++ ..|++... .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~-~~~~g~v~-------------------~~~l~~~~-----~---- 50 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGH--DGFPVVDN-GKVVGIVS-------------------ARDLLGKD-----P---- 50 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCC--CeeeEeEC-CEEEEEEE-------------------HHHhhccC-----c----
Confidence 567889999999999999988888 89999997 89999954 45544200 0
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
. .+..++|...+.++.+++++.+++
T Consensus 51 -------------------~------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~ 75 (107)
T cd04610 51 -------------------D------------------------------------ETVEEIMSKDLVVAVPEMDIMDAA 75 (107)
T ss_pred -------------------c------------------------------------ccHHHhCCCCCeEECCCCCHHHHH
Confidence 0 000123455778999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+.|.+++.+++||+|++|+++|+|+..||+++
T Consensus 76 ~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 76 RVMFRTGISKLPVVDENNNLVGIITNTDVIRS 107 (107)
T ss_pred HHHHHhCCCeEeEECCCCeEEEEEEHHHhhcC
Confidence 99999999999999998999999999999863
No 64
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.9e-11 Score=102.08 Aligned_cols=131 Identities=20% Similarity=0.229 Sum_probs=88.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++++++++.+|++.|.+.++ +++||+|++|+++|+|+..||.+ ............
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~--~~~~V~d~~~~~~G~i~~~~l~~-------------------~~~~~~~~~~~~- 59 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKI--SGVPVVDNEGRVVGIVSEGDLIR-------------------KIYKGKGLFYVT- 59 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCC--CccceECCCCCEEEEEeHHHHHH-------------------HHhccCCccccc-
Confidence 57789999999999999998888 99999999999999966444433 221000000000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+.... .+. . . +.. . .+. ......+|..+++++.+++++.+++.
T Consensus 60 ---------~~~~~--~~~---------------~--~-~~~---~--~~~---~~~v~~~~~~~~~~v~~~~~l~~~~~ 102 (132)
T cd04636 60 ---------LLYSV--IFL---------------D--E-SKI---K--KLL---GKKVEEIMTKKVITVDEDTTIEDVAR 102 (132)
T ss_pred ---------ccccc--ccc---------------c--h-HHH---H--HHc---CCCHHHhccCCceEECCCCcHHHHHH
Confidence 00000 000 0 0 000 0 000 01122346678899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|+ |+++|+||..|++++
T Consensus 103 ~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 103 IMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred HHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 999999999999998 999999999999863
No 65
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.29 E-value=2.8e-11 Score=125.91 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=92.2
Q ss_pred CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 195 ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 195 ~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
|.++++++.+++++.+|+++|.++++ +++||+|+ +|+++|+|| .+|++...+.
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~--~~lpVvD~~~~~GklvGIVT-------------------~~DL~~v~~~--- 161 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGF--SSVCVTETGTMGSKLLGYVT-------------------KRDWDFVNDR--- 161 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCC--ceEEEEeCCCcCCeEEEEEE-------------------HHHHhhcccc---
Confidence 56889999999999999999999999 99999997 489999954 5555421000
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc--cEEeCCC
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE--AIVCHPT 349 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~it~~~~ 349 (397)
. .+..++|+.+ ++++.++
T Consensus 162 ------------------------~------------------------------------~~V~eIMt~~~~lvtv~~~ 181 (505)
T PLN02274 162 ------------------------E------------------------------------TKLSEVMTSDDDLVTAPAG 181 (505)
T ss_pred ------------------------C------------------------------------CcHHHHhccCCCcEEECCC
Confidence 0 0001235544 8999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 350 SSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 350 ~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++.++++.|.+++++++||||++++++|+||+.||++.+..
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 999999999999999999999998999999999999998753
No 66
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.29 E-value=4e-11 Score=123.63 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=99.8
Q ss_pred CccCCccccCCCCcCeEEEeCCCcHHHHHHHHHh-----cCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcC
Q 016003 184 IPALSIDSLGIISTDVVAVDYHSPASLALEAISR-----SLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLS 258 (397)
Q Consensus 184 l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~-----~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls 258 (397)
++..++++ +|++++++++++.++.+|++.|++ +++ ..++|+|++|+++|+| +
T Consensus 128 ~~e~tvg~--iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~--~~v~Vvd~~~~l~GvV-------------------~ 184 (449)
T TIGR00400 128 YSDDSAGR--IMTIEYVELKEDYTVGKALDYIRRVAKTKEDI--YTLYVTNESKHLKGVL-------------------S 184 (449)
T ss_pred CCcchHHH--hCcCceEEECCCCcHHHHHHHHHhcCCCccce--eEEEEECCCCeEEEEE-------------------E
Confidence 45566766 799999999999999999999975 445 7899999999999994 4
Q ss_pred hhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhh
Q 016003 259 AGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMV 338 (397)
Q Consensus 259 ~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (397)
.+|++..- + + .....+
T Consensus 185 l~dLl~a~----~---------------------------------------------~---------------~~v~~i 200 (449)
T TIGR00400 185 IRDLILAK----P---------------------------------------------E---------------EILSSI 200 (449)
T ss_pred HHHHhcCC----C---------------------------------------------C---------------CcHHHH
Confidence 55554200 0 0 001134
Q ss_pred cCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 339 RRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 339 ~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
|.++++++++++++.++++.|.+++++.+||||++|+++|+||..|+++.+.++.
T Consensus 201 m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 201 MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA 255 (449)
T ss_pred hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh
Confidence 6678899999999999999999999999999999999999999999999997753
No 67
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=6.7e-11 Score=96.91 Aligned_cols=108 Identities=27% Similarity=0.307 Sum_probs=85.9
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.++.++.+|++.|.+.+. +.+||+|+ |+++|++ +..|++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~v-------------------~~~dl~~~~~~-------- 51 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGH--TALPVVEG-GRVVGII-------------------SRRDVEKALRH-------- 51 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCC--CeeeEeeC-CEEEEEE-------------------EHHHHHHHHhc--------
Confidence 467889999999999999998888 99999998 9999994 45555542110
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.++ ..+...+|..+++++.+++++.+++
T Consensus 52 ------------------------~~~----------------------------~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 52 ------------------------GLG----------------------------HAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred ------------------------ccc----------------------------cCcHHHHhcCCCEEECCCCcHHHHH
Confidence 000 0001123566889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.+|.+++.+++||+| +|+++|+||+.||++
T Consensus 80 ~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 80 ELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 999999999999999 689999999999985
No 68
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.28 E-value=3.9e-11 Score=99.30 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=81.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
++.++.+++++.+|++.|.+.++ +.+||+|+ +|+++|+++ ..|++.....
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~~~~G~v~-------------------~~dl~~~~~~------ 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGF--SGIPVTEDGKSGGKLLGIVT-------------------SRDIDFLTDS------ 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCC--CceEEeeCCCcCCEEEEEEE-------------------hHHhhhhhcc------
Confidence 46788999999999999998888 99999997 789999954 4444320000
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCC--CCcH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHP--TSSL 352 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~--~~sl 352 (397)
. . . ...+|..+..++.+ ++++
T Consensus 56 ------------~--------------~-----------------------~--------v~~~~~~~~~~~~~~~~~~l 78 (114)
T cd04602 56 ------------E--------------T-----------------------P--------LSEVMTPREVLVVAPTGITL 78 (114)
T ss_pred ------------C--------------C-----------------------C--------HHHhcCCCceEEECCCCCCH
Confidence 0 0 0 00123444455544 9999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.++++.|.+++.+++||+|++|+++|+||..||++
T Consensus 79 ~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 79 EEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999899999999999975
No 69
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6e-11 Score=99.04 Aligned_cols=121 Identities=22% Similarity=0.290 Sum_probs=87.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.++.++.+|++.|.+.++ +.+||+|+ |+++|+++ ..|++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~v~-------------------~~~l~~~~~~--------- 50 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKF--HHLLVVED-NELVGVIS-------------------DRDYLKAISP--------- 50 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCC--CEEEEEeC-CeEEEEEE-------------------HHHHHHHHHH---------
Confidence 57889999999999999999988 99999997 89999955 5555432110
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.+.. .-+.. .++. . . ......+|..+++++.+++++.++++
T Consensus 51 ----~~~~-~~~~~-------------------------~~~~--~---~----~~~~~~~~~~~~~~v~~~~~l~~~~~ 91 (122)
T cd04637 51 ----FLGT-AGETE-------------------------KDLA--T---L----NRRAHQIMTRDPITVSPDTPVDEASK 91 (122)
T ss_pred ----Hhcc-ccchH-------------------------HHHH--H---H----HhHHHHhhcCCCeeeCCCCcHHHHHH
Confidence 0000 00000 0000 0 0 00012235668999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|++|+++|++|+.|++++
T Consensus 92 ~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 92 LLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred HHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 9999999999999998999999999999874
No 70
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.27 E-value=7.4e-11 Score=96.40 Aligned_cols=109 Identities=19% Similarity=0.295 Sum_probs=86.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.+. ..+||+|+ |+++|+ ++.+|++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~~l~~~~~~~-------- 51 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRI--SSIVVVDD-GRPLGI-------------------VTERDILRLLASG-------- 51 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCC--CEEEEeeC-CEEEEE-------------------EeHHHHHHHHhcC--------
Confidence 46789999999999999998888 99999987 899999 5566665422100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. . .......|..+++++.+++++.++++
T Consensus 52 ----------~~------~-----------------------------------~~~v~~~~~~~~~~~~~~~~l~~~l~ 80 (111)
T cd04611 52 ----------PD------L-----------------------------------QTPVGEVMSSPLLTVPADTSLYDARQ 80 (111)
T ss_pred ----------CC------C-----------------------------------CcCHHHhcCCCceEECCCCCHHHHHH
Confidence 00 0 00011235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+.+||+|++|+++|+||..||++
T Consensus 81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 81 LMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 999999999999999899999999999986
No 71
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=5.7e-11 Score=97.52 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=86.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhh-hhccCCCCchh
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMA-YIDCGGPPEDL 275 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~-~~~~~~~~~~l 275 (397)
+++.++.+++++.+|++.|.+.+. +.+||+|+ |+++|.|+ ..|++. ....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~i~-------------------~~~l~~~~~~~------- 51 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDV--GALPVCEN-DRLVGIVT-------------------DRDIVVRAVAE------- 51 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCC--CEEEEeeC-CEEEEEEE-------------------hHHHHHHHhhc-------
Confidence 357889999999999999999888 99999998 99999955 444432 0000
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v 355 (397)
+.. . .. .+...+|...+.++.+++++.++
T Consensus 52 -----------~~~------------~--------------------~~--------~~~~~~~~~~~~~v~~~~~~~~~ 80 (113)
T cd04622 52 -----------GRD------------P--------------------DT--------TTVGDVMTRGVVTVTEDDDVDEA 80 (113)
T ss_pred -----------cCC------------c--------------------cc--------CCHHHhccCCccEECCCCCHHHH
Confidence 000 0 00 00112456688999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999986
No 72
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=4.8e-11 Score=99.36 Aligned_cols=120 Identities=19% Similarity=0.208 Sum_probs=86.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|.+.++ .++||+|+ |+++|+++. .|++......
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~--~~i~V~~~-~~~~G~v~~-------------------~~l~~~~~~~-------- 51 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDI--SRLPVIEG-GKLVGIVTE-------------------KDIADALRSF-------- 51 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCC--CeeEEEEC-CEEEEEEch-------------------HHHHHhhhhh--------
Confidence 57789999999999999998888 99999997 999999654 4444311100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. ...+ ... . . .. +. ..+....|..+.++|.+++++.+++.
T Consensus 52 ----~-----~~~~---~~~--~-~--------------~~--------~~---~~~~~~~~~~~~~~v~~~~~l~~~~~ 91 (121)
T cd04633 52 ----R-----PLVR---DRH--Q-E--------------RR--------IR---NLPVSDIMTRPVITIEPDTSVSDVAS 91 (121)
T ss_pred ----h-----hccc---chh--h-h--------------hh--------hh---ccCHHHHccCCceEECCCCcHHHHHH
Confidence 0 0000 000 0 0 00 00 00112245678999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+++.+++||+|+ |+++|+||..|++++
T Consensus 92 ~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 92 LMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred HHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 999999999999998 899999999999863
No 73
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.26 E-value=4.4e-11 Score=123.50 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=92.8
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|.++++++.+++++.+|+++|.++++ +.+||+|+ ++++|+| +.+|++.. +.
T Consensus 93 im~~~pvtv~p~~tI~eA~~lm~~~~~--~~~vVvD~-gklvGIV-------------------T~rDL~~~-~~----- 144 (475)
T TIGR01303 93 LVLDTPITLAPHDTVSDAMALIHKRAH--GAAVVILE-DRPVGLV-------------------TDSDLLGV-DR----- 144 (475)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCC--eEEEEEEC-CEEEEEE-------------------EHHHhhcC-CC-----
Confidence 577889999999999999999999988 99999985 7999995 45555320 00
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
... ..++|+.+++++.+++++.
T Consensus 145 --------------------------------------------------~~~--------V~dIMt~~litv~~~~sL~ 166 (475)
T TIGR01303 145 --------------------------------------------------FTQ--------VRDIMSTDLVTAPADTEPR 166 (475)
T ss_pred --------------------------------------------------CCC--------HHHHccCCceEeCCCCcHH
Confidence 000 1134778999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++.+|.+++++++||||++|+++|+||.+||++....
T Consensus 167 eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 167 KAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred HHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 99999999999999999988999999999999997654
No 74
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.26 E-value=7.4e-11 Score=121.59 Aligned_cols=113 Identities=23% Similarity=0.299 Sum_probs=93.1
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC---CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCC
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD---GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGG 270 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 270 (397)
.|.++++++.+++++.+|+++|.++++ +++||+|++ ++++|+|+ .+|++...+.
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~--s~lpVvd~~~~~~~lvGIVt-------------------~rDL~~~~~~-- 141 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGI--SGIPVVEDGDMTGKLVGIIT-------------------KRDIRFVKDK-- 141 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCC--CEEEEEeCCCCCCeEEEEEE-------------------HHHHhhhhcC--
Confidence 566789999999999999999999999 999999988 79999954 5555420000
Q ss_pred CCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC-CccEEeCCC
Q 016003 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR-AEAIVCHPT 349 (397)
Q Consensus 271 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~~~ 349 (397)
. .. ...+|. .+++++.++
T Consensus 142 -------------------------~----------------------------~~--------V~dvm~~~~~~~V~~~ 160 (450)
T TIGR01302 142 -------------------------G----------------------------KP--------VSEVMTREEVITVPEG 160 (450)
T ss_pred -------------------------C----------------------------CC--------HHHhhCCCCCEEECCC
Confidence 0 00 012355 489999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 350 SSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 350 ~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
+++.++++.|.+++++++||||++|+++|+||+.||++.+.
T Consensus 161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 99999999999999999999999999999999999998763
No 75
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.26 E-value=7.4e-11 Score=116.62 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=101.0
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
...+|+|+|...++++++++++|+.+|++.|.++++..+||+|. +++++|+|+..|+.+.+..+..
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-------------~g~lvGivt~~Dl~~~~~~~~~- 265 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-------------NMKIEGIFTDGDLRRVFDMGID- 265 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-------------CCcEEEEEecHHHHHHHhcCCC-
Confidence 45679999963348999999999999999999999988888885 3689999999999875543211
Q ss_pred CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 86 LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 86 ~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
..+.+|+++|... ++++.+++++.+|++.|. +++++++|.++ ++++|+
T Consensus 266 -----~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~----------------------~~lvGi 314 (326)
T PRK10892 266 -----LRQASIADVMTPG----GIRVRPGILAVDALNLMQSRHITSVLVADG----------------------DHLLGV 314 (326)
T ss_pred -----cccCCHHHhcCCC----CEEECCCCCHHHHHHHHHHCCCcEEEEeeC----------------------CEEEEE
Confidence 1246899999654 889999999999999999 89999988742 357899
Q ss_pred ecHHHHHHH
Q 016003 165 LTQEDIIRF 173 (397)
Q Consensus 165 ITq~DIi~~ 173 (397)
||+.||++.
T Consensus 315 it~~dil~~ 323 (326)
T PRK10892 315 LHMHDLLRA 323 (326)
T ss_pred EEhHHhHhc
Confidence 999999875
No 76
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=9.5e-11 Score=94.90 Aligned_cols=103 Identities=19% Similarity=0.254 Sum_probs=82.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.++++.|.+++. ..+||+| +|+++|+++ ..|+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d-~~~~~Giv~-------------------~~~l~~~~~~--------- 50 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRI--GGLPVVE-DGKLVGIIT-------------------SRDVRRAHPN--------- 50 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCC--CEEEEEE-CCEEEEEEe-------------------hHHhhccccc---------
Confidence 56789999999999999998888 9999998 589999954 4444331000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. ....|..++.++.+++++.++++
T Consensus 51 --------~~-----------------------------------------------~~~~~~~~~~~v~~~~~l~~~~~ 75 (105)
T cd04599 51 --------RL-----------------------------------------------VADAMTREVVTISPEASLLEAKR 75 (105)
T ss_pred --------CC-----------------------------------------------HHHHccCCCEEECCCCCHHHHHH
Confidence 00 00124557899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+|.+++..++||+|+ |+++|+||..||+.
T Consensus 76 ~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 76 LMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 999999999999998 89999999999974
No 77
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=7.1e-11 Score=97.49 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=89.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.+++...+||+|. +++++|+++..|+.....+ ...+.++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~dl~~~~~~--------~~~~~~v~~ 60 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE-------------ENKVLGQVTLSDLLEIGPN--------DYETLKVCE 60 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCCEEEEEEHHHHHhhccc--------cccccChhh
Confidence 3578999999999999999999999999996 3689999999999874211 112457889
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +.++.+++++.+|++.|. ++.++++|++++ +..+|+||+.|+++|
T Consensus 61 ~~~~~----~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~---------------------~~~~Giit~~di~~~ 111 (111)
T cd04603 61 VYIVP----VPIVYCDSKVTDLLRIFRETEPPVVAVVDKE---------------------GKLVGTIYERELLRF 111 (111)
T ss_pred eeecC----CcEECCCCcHHHHHHHHHHcCCCeEEEEcCC---------------------CeEEEEEEhHHhhcC
Confidence 98543 788999999999999999 789999988632 457899999999874
No 78
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.25 E-value=4.8e-11 Score=101.08 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=89.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++++++.|+.+|++.|.++++..+||+|.+ ++++|+++..|++..+.+.. ...+.+|+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Gii~~~dl~~~~~~~~------~~~~~~v~ 62 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-------------GKILGMVTLGNLLSSLSSGK------VQPSDPVS 62 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CCEEEEEEHHHHHHHHHHhc------cCCCCcHH
Confidence 467899999999999999999999999999963 68999999999998776522 12357899
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
++|... +.++.+++++.++.++|... +.+.+........ -....++++.+||||..|+++|+
T Consensus 63 ~im~~~----~~~v~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~----------~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 63 KALYKQ----FKRVNKNDTLGKLSRILETD-AFLLVFFEQISSA----------AIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred HHhhcc----ceecCCCCCHHHHHhhcccC-CceEEEecccccc----------ccccccccceEEEEehhHhhhhC
Confidence 999765 88999999999999966421 1111111100000 00112336889999999999874
No 79
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.24 E-value=2.1e-10 Score=116.81 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=123.0
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
+-|..++|+|+|....++++++.++|++++++.+.+++++++||++.+ .++++|+++..|++.++.+
T Consensus 186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~------------~d~ivGiv~~kDll~~~~~- 252 (408)
T TIGR03520 186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET------------IDNITGVLYIKDLLPHLNK- 252 (408)
T ss_pred hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC------------CCceEEEEEHHHHHhHhcc-
Confidence 346788999999776689999999999999999999999999999853 3689999999999976532
Q ss_pred CCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCce
Q 016003 83 SNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGRE 161 (397)
Q Consensus 83 ~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (397)
+ ..++.++|. +++.|.+++++.++++.|. ++.|..+|+++. |..
T Consensus 253 ~---------~~~l~~~~~-----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~---------------------G~~ 297 (408)
T TIGR03520 253 K---------NFDWQSLLR-----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY---------------------GGT 297 (408)
T ss_pred C---------CCCHHHHcC-----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC---------------------CCE
Confidence 1 124677774 3689999999999999999 567777776532 456
Q ss_pred eeeecHHHHHHHHHhcc-CCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHH
Q 016003 162 FCWLTQEDIIRFILSSI-SLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAI 215 (397)
Q Consensus 162 ~~IITq~DIi~~l~~~~-~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m 215 (397)
.||||.+||++.+.... ++... ....+.. .....+.+...+++.+..+.|
T Consensus 298 ~GiVT~eDileeivgei~de~d~-~~~~i~~---~~~~~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 298 SGLVTLEDIIEEIVGDISDEFDD-EDLIYSK---IDDNNYVFEGKTSLKDFYKIL 348 (408)
T ss_pred EEEEEHHHHHHHHhCCCCCcCCc-CccceEE---eCCCeEEEEeccCHHHHHHHh
Confidence 79999999999885322 11111 1111211 234578899999999998888
No 80
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=1.4e-10 Score=95.10 Aligned_cols=111 Identities=24% Similarity=0.330 Sum_probs=85.7
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++++++++.++++.|.+.+. +.+||+|++ +++|+ ++..|++..+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~~~G~-------------------v~~~dl~~~~~~~------- 51 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNI--GRLIVVDNE-KPVGI-------------------ITERDLVKKVVSR------- 51 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCC--CEEEEEECC-EEEEE-------------------EEHHHHHHHHhhc-------
Confidence 357789999999999999998888 999999965 99999 5566666521000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
... . . ..+...+|..++.+|.+++++.+++
T Consensus 52 ----------~~~------~--------------------------~--------~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 52 ----------NLK------P--------------------------R--------EVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred ----------cCC------c--------------------------c--------cCCHHHhcCCCcEEECCCCCHHHHH
Confidence 000 0 0 0001234566889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++|.+++.+++||||++ +++|+||..||++
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999999975 9999999999985
No 81
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.24 E-value=2.5e-10 Score=120.53 Aligned_cols=197 Identities=19% Similarity=0.241 Sum_probs=125.7
Q ss_pred cCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHH
Q 016003 93 KQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDII 171 (397)
Q Consensus 93 ~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi 171 (397)
..+|+++|.+. ++++.+++++.+|++.|. +++++++|++++ ++..|+||..|+.
T Consensus 67 ~~~V~dim~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------g~l~Givt~~di~ 121 (546)
T PRK14869 67 KPQVRDLEIDK----PVTVSPDTSLKEAWNLMDENNVKTLPVVDEE---------------------GKLLGLVSLSDLA 121 (546)
T ss_pred CCcHHHhcCCC----CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CEEEEEEEHHHHH
Confidence 36899999755 899999999999999999 789999988632 4578899999999
Q ss_pred HHHHhccC--CCCCCccCCcc----------------------c-----------cCCCCc-CeEEEeCCCcHHHHHHHH
Q 016003 172 RFILSSIS--LFSPIPALSID----------------------S-----------LGIIST-DVVAVDYHSPASLALEAI 215 (397)
Q Consensus 172 ~~l~~~~~--~l~~l~~~ti~----------------------~-----------L~~~~~-~v~tv~~~~~~~~a~~~m 215 (397)
+++.+..+ .+... ..++. . ++.+.+ +++.+.....+ ...+
T Consensus 122 ~~~~~~~~~~~~~~~-~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~a 197 (546)
T PRK14869 122 RAYMDILDPEILSKS-PTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAA 197 (546)
T ss_pred HHHHhhcchhhhhhc-CCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHH
Confidence 87764221 01000 00000 0 123443 35555444443 3356
Q ss_pred HhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhh---h
Q 016003 216 SRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGM---L 292 (397)
Q Consensus 216 ~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~---~ 292 (397)
.+.++ +++.|..... + +. +++...+ +++++-+ .
T Consensus 198 i~~~~--~~lIlt~g~~-~-----------------------~~-~v~~la~-----------------~~~i~ii~t~~ 233 (546)
T PRK14869 198 IEAGV--RLLIITGGAP-V-----------------------SE-DVLELAK-----------------ENGVTVISTPY 233 (546)
T ss_pred HHcCC--CEEEECCCCC-C-----------------------CH-HHHHHHH-----------------hCCCeEEEecc
Confidence 77888 8888775432 1 11 1111110 1111110 0
Q ss_pred hhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC-CccEEeCCCCcHHHHHHHHHHcCCcEEEEEc
Q 016003 293 EHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR-AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIE 371 (397)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd 371 (397)
+.+.. ...+.. ..+...+|+ .+++++++++++.++.+.|.+++++++||||
T Consensus 234 dt~~t--------------------------~~~l~~--~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd 285 (546)
T PRK14869 234 DTFTT--------------------------ARLINQ--SIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVD 285 (546)
T ss_pred cHHHH--------------------------HHHhhc--CCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEc
Confidence 00000 000000 112345688 8999999999999999999999999999999
Q ss_pred CCCcEEEEEehHHHHHHHH
Q 016003 372 DDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 372 ~~~~lvGvVt~~DIl~~l~ 390 (397)
++|+++|+||+.|+++...
T Consensus 286 ~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 286 EDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred CCCCEEEEEEHHHhhcccc
Confidence 9999999999999998654
No 82
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.4e-10 Score=95.13 Aligned_cols=111 Identities=22% Similarity=0.342 Sum_probs=83.2
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|++.|.+++. +.++|.+ +|+++|++ +.+|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~~-~~~~~G~v-------------------~~~dl~~~~~~~-------- 51 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDL--GSLVVME-RGELVGLL-------------------TFREVLQAMAQH-------- 51 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCC--CeEEEee-CCEEEEEE-------------------EHHHHHHHHHhc--------
Confidence 46789999999999999988877 7777665 48999994 556665422100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+. .++ . .....+|..++.++.+++++.++++
T Consensus 52 ---------~~------------~~~--------------------~--------~~v~~~~~~~~~~v~~~~~l~~a~~ 82 (112)
T cd04625 52 ---------GA------------GVL--------------------D--------TTVRAIMNPEPIVASPDDSIDEVRR 82 (112)
T ss_pred ---------CC------------chh--------------------c--------CCHHHHhCCCCeEECCCCCHHHHHH
Confidence 00 000 0 0011235667889999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+++.+++||+|+ |+++|+||..||+++
T Consensus 83 ~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 83 LMVERHLRYLPVLDG-GTLLGVISFHDVAKA 112 (112)
T ss_pred HHHHcCCCeeeEEEC-CEEEEEEEHHHhhcC
Confidence 999999999999985 899999999999863
No 83
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.23 E-value=7.7e-11 Score=122.63 Aligned_cols=113 Identities=25% Similarity=0.294 Sum_probs=93.9
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|.++++++.+++++.+|+++|.++++ +.+||+|++|+++|+|| .+|++...+.
T Consensus 92 im~~~~v~i~~~~tv~ea~~~m~~~~~--~~lpVvd~~g~lvGiVt-------------------~~DL~~~~~~----- 145 (486)
T PRK05567 92 GVVTDPVTVTPDTTLAEALALMARYGI--SGVPVVDENGKLVGIIT-------------------NRDVRFETDL----- 145 (486)
T ss_pred cccCCCeEeCCCCCHHHHHHHHHHhCC--CEEEEEccCCEEEEEEE-------------------HHHhhhcccC-----
Confidence 677899999999999999999999999 99999999999999955 5555321000
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC-CccEEeCCCCcH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR-AEAIVCHPTSSL 352 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~~~~sl 352 (397)
. .. ...+|. .++++|.+++++
T Consensus 146 ----------------------~----------------------------~~--------V~dim~~~~~v~v~~~~sl 167 (486)
T PRK05567 146 ----------------------S----------------------------QP--------VSEVMTKERLVTVPEGTTL 167 (486)
T ss_pred ----------------------C----------------------------Cc--------HHHHcCCCCCEEECCCCCH
Confidence 0 00 012355 689999999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
.+++..|.+++++.+||+|++|+++|+||..||++.+.
T Consensus 168 ~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 168 EEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 99999999999999999999999999999999998863
No 84
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.23 E-value=1e-10 Score=95.21 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=80.9
Q ss_pred EEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHH
Q 016003 200 VAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVV 279 (397)
Q Consensus 200 ~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~ 279 (397)
+++.++.++.+|++.|.+.++ +.+||+|+ |+++|+++ ..|++....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~v~-------------------~~~l~~~~~------------ 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDL--LSLPVVDY-NKFLGAVY-------------------LKDIENATY------------ 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCC--cEEEEEEC-CEEEEEEE-------------------HHHHhhhcc------------
Confidence 468999999999999999988 99999998 99999954 455443100
Q ss_pred HHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHHH
Q 016003 280 KERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQA 359 (397)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m 359 (397)
. .. ...|..+.+++.+++++.+++..|
T Consensus 50 ---------~------------------------------------~~--------~~~~~~~~~~v~~~~~l~~a~~~~ 76 (104)
T cd04594 50 ---------G------------------------------------DV--------VDYIVRGIPYVRLTSTAEEAWEVM 76 (104)
T ss_pred ---------c------------------------------------ch--------hhhhhcCCcEEcCCCCHHHHHHHH
Confidence 0 00 012445678999999999999999
Q ss_pred HHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 360 IAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 360 ~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.+++.+++||+| +|+++|+||..||++
T Consensus 77 ~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 77 MKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 999999999998 489999999999975
No 85
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.21 E-value=1.3e-10 Score=118.35 Aligned_cols=123 Identities=14% Similarity=0.225 Sum_probs=99.2
Q ss_pred ccCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhh
Q 016003 185 PALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGD 261 (397)
Q Consensus 185 ~~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~D 261 (397)
.+.++++ +|++ ++++++.++++.++++.|.+++. +.+||.+++ ++++|+ ++.+|
T Consensus 189 ~~~~v~d--iMtpr~~v~~l~~~~~~~e~~~~~~~~~~--sR~PV~~~~~d~ivGi-------------------v~~kD 245 (408)
T TIGR03520 189 GNTDTKQ--VMRPRLDIFALDIETSFSEIIPKIIENGY--SRIPVYKETIDNITGV-------------------LYIKD 245 (408)
T ss_pred CCCEeee--eCCchHhEEEEECCCCHHHHHHHHHhCCC--CEEEEEcCCCCceEEE-------------------EEHHH
Confidence 3556665 7985 79999999999999999999999 999999875 589999 55777
Q ss_pred hhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC
Q 016003 262 LMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA 341 (397)
Q Consensus 262 l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
++.+.... . . .+ ..++ +
T Consensus 246 ll~~~~~~-----------------~--------------~-----------------------~l--------~~~~-~ 262 (408)
T TIGR03520 246 LLPHLNKK-----------------N--------------F-----------------------DW--------QSLL-R 262 (408)
T ss_pred HHhHhccC-----------------C--------------C-----------------------CH--------HHHc-C
Confidence 76422100 0 0 00 0112 3
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+++++.++.++.++++.|.+++.|..+|+|+.|.++|+||..||+..+..++
T Consensus 263 ~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei 314 (408)
T TIGR03520 263 EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDI 314 (408)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCC
Confidence 6789999999999999999999999999999999999999999999997654
No 86
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.21 E-value=2.4e-10 Score=93.68 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=84.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.++.++.+|++.|.+.+. +.++|+|+ |+++|++ +..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~v-------------------~~~~l~~~~~~~-------- 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGA--DALLVRDG-DPRLGIV-------------------TRTDLLDAVLLD-------- 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCC--CEEEEecC-CeEEEEE-------------------EHHHHHHHHHcC--------
Confidence 46788999999999999998888 99999998 8999994 455555421000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. .. . .......|..+..++.+++++.++++
T Consensus 52 ---------~-------------~~--------------~--------------~~~i~~~~~~~~~~v~~~~~l~~~~~ 81 (111)
T cd04589 52 ---------G-------------LP--------------S--------------STPVGEIATFPLITVDPDDFLFNALL 81 (111)
T ss_pred ---------C-------------CC--------------C--------------CCCHHHHhCCCcEEECCCCcHHHHHH
Confidence 0 00 0 00011235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|+ ++++|+||..|+++
T Consensus 82 ~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 82 LMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 999999999999986 89999999999986
No 87
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=2.8e-10 Score=94.86 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=88.5
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
++..+.++.++.++++.|. ++...++|.+++ ++.+|+||+.|+.+...+.. .+.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~---------------------~~~~Givt~~dl~~~~~~~~----~~~ 56 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED---------------------GDLVGVVSRKDLLKASIGGA----DLQ 56 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------CCEEEEEEHHHHHHHHHcCC----Ccc
Confidence 5788999999999999997 788888876532 35689999999998765321 122
Q ss_pred cCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC---CcEEEeeccCcccC
Q 016003 186 ALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD---GFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~is~~dl~~ 245 (397)
..++++ +|.+ ++.++.+++++.+|+++|.++++ ..+||||++ |+++|+||.+||.+
T Consensus 57 ~~~~~~--~~~~~~~~~~v~~~~~l~~~~~~~~~~~~--~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 57 KVPVGV--IMTRMPNITTTTPEESVLEAAKKLIEHQV--DSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCHHH--HhCCCCCcEEECCCCcHHHHHHHHHHcCC--CEeeEEeCCCccceEEEEEEhhheec
Confidence 444554 6764 79999999999999999999999 999999987 79999988777754
No 88
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.20 E-value=1.9e-10 Score=93.62 Aligned_cols=109 Identities=26% Similarity=0.315 Sum_probs=82.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|++.|.++++ +.+||+|+ |+++|+ ++..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~dl~~~~~~~-------- 51 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGV--SQLPVVDD-GRVVGS-------------------IDESDLLDALIEG-------- 51 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCC--ceeeEeeC-CeeEEE-------------------EeHHHHHHHHhcc--------
Confidence 57789999999999999999988 99999998 999999 4566665522100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. .. . .......+..+++++.+++++.+++.
T Consensus 52 ------------------------~--------------~~----~--------~~~~~~~~~~~~~~v~~~~~l~~~~~ 81 (110)
T cd04609 52 ------------------------K--------------AK----F--------SLPVREVMGEPLPTVDPDAPIEELSE 81 (110)
T ss_pred ------------------------c--------------cc----c--------CcCHHHHhcCCCceeCCCCcHHHHHH
Confidence 0 00 0 00011235667899999999999998
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+ . +.+||+|++|+++|+||+.||+++
T Consensus 82 ~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 82 LLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred HHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 8887 3 458999988999999999999864
No 89
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=3.3e-10 Score=93.56 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++++.+|++.|.++++..+||.+.+ .++++|+++..|+++++..... .....++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~------------~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~ 63 (114)
T cd04630 1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRR------------ESDAYGIVTMRDILKKVVAEGR-----DPDRVNVY 63 (114)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECC------------CCcEEEEEehHHHHHHHHhCCC-----CCCccCHH
Confidence 467899999999999999999999999999862 1589999999999987754211 11246789
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... ++++.+++++.++++.|. .+.+.++|.++ +.+.|+||..|+++
T Consensus 64 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----------------------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 64 EIMTKP----LISVSPDMDIKYCARLMERTNIRRAPVVEN----------------------NELIGIISLTDIFL 113 (114)
T ss_pred HHhcCC----CeeECCCCCHHHHHHHHHHcCCCEeeEeeC----------------------CEEEEEEEHHHhhc
Confidence 999543 899999999999999999 68888888753 35688999999875
No 90
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=3.2e-10 Score=93.92 Aligned_cols=111 Identities=20% Similarity=0.287 Sum_probs=91.9
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
.+.++++++|+.+|++.|.+++...+||+|.+ ++|+|+++..|+.+.+.... ......++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------g~~~G~vt~~dl~~~~~~~~-----~~~~~~~v~~ 63 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-------------GKLAGVLTKTDVVRQMGRCG-----GPGCTAPVEN 63 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-------------CCEEEEEehHHHHHHHhhcC-----CCcccCCHHH
Confidence 36789999999999999999999999999963 68999999999998765311 0123467899
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... ++++.+++++.++++.|. ++.++++|.+.+ ++.+|+||+.|+++
T Consensus 64 ~~~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------~~~~Gvi~~~dl~~ 113 (114)
T cd04619 64 VMTRA----VVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN---------------------ARPLGVLNARDALK 113 (114)
T ss_pred HhcCC----CeeECCCCCHHHHHHHHHHcCCCeEEEECCC---------------------CcEEEEEEhHhhcc
Confidence 99654 889999999999999999 799999997532 35789999999874
No 91
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.19 E-value=2.1e-10 Score=112.98 Aligned_cols=121 Identities=18% Similarity=0.257 Sum_probs=102.4
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
..+|+|+|..+++++++++++|+.+|++.|.+++...+||+|. +++++|+|+..|+..++..+.
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-------------~g~~iG~vt~~dl~~~~~~~~--- 259 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-------------QQQVQGVFTDGDLRRWLVGGG--- 259 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-------------CCcEEEEecHHHHHHHHhCCC---
Confidence 6789999965545899999999999999999999999999996 368999999999998765421
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
..+.+|.++|... ++++.+++++.+|++.|. +++.++||++.+ ++.+|+|
T Consensus 260 ----~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------~~lvGvI 310 (321)
T PRK11543 260 ----ALTTPVNEAMTRG----GTTLQAQSRAIDAKEILMKRKITAAPVVDEN---------------------GKLTGAI 310 (321)
T ss_pred ----CcCCcHHHhcCCC----CEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------CeEEEEE
Confidence 2346799999654 888999999999999999 899999998632 3578999
Q ss_pred cHHHHHH
Q 016003 166 TQEDIIR 172 (397)
Q Consensus 166 Tq~DIi~ 172 (397)
|+.||++
T Consensus 311 t~~di~~ 317 (321)
T PRK11543 311 NLQDFYQ 317 (321)
T ss_pred EHHHHHh
Confidence 9999985
No 92
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.18 E-value=1.4e-10 Score=120.69 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=91.7
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC---CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCC
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD---GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGG 270 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 270 (397)
.|..+++++.+++++.+|+++|.++++ +++||+|++ |+++|+|+ .+|++. ....
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~--s~vpVvd~~~~~gkLvGIVt-------------------~~DL~~-~~~~- 157 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGF--SSILITVDGKVGGKLLGIVT-------------------SRDIDF-VKDK- 157 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCC--cEEEEEeCCccCCeEEEEEE-------------------HHHHhh-cccC-
Confidence 456778999999999999999999999 999999974 79999955 555542 1000
Q ss_pred CCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC--ccEEeCC
Q 016003 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA--EAIVCHP 348 (397)
Q Consensus 271 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~~ 348 (397)
... ..++|+. +++++++
T Consensus 158 -----------------------------------------------------~~~--------V~diMt~~~~lvtv~~ 176 (495)
T PTZ00314 158 -----------------------------------------------------STP--------VSEVMTPREKLVVGNT 176 (495)
T ss_pred -----------------------------------------------------CCC--------HHHhhCCcCCceEeCC
Confidence 000 1123555 8899999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 349 TSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 349 ~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
+.++.+++++|.+++++.+||||++++++|+||++||++...
T Consensus 177 ~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 177 PISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 999999999999999999999999999999999999998753
No 93
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.18 E-value=4.1e-10 Score=90.86 Aligned_cols=111 Identities=28% Similarity=0.364 Sum_probs=88.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.++++.|...+. ..+||+|++++++|+ ++.+|++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~G~-------------------v~~~~l~~~~~~~-------- 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGI--SGLPVVDDDGRLVGI-------------------VTERDLLRALAEG-------- 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCC--ceEEEECCCCCEEEE-------------------EeHHHHHHHHHhc--------
Confidence 46789999999999999998888 999999998999999 5566766532100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. . .+ .. . ....+..+++++.+++++.++++
T Consensus 53 -------------~----~--------------------~~----~~-~--------~~~~~~~~~~~~~~~~~~~~~~~ 82 (113)
T cd02205 53 -------------G----L--------------------DP----LV-T--------VGDVMTRDVVTVSPDTSLEEAAE 82 (113)
T ss_pred -------------c----C--------------------Cc----cc-c--------HHHHhcCCceecCCCcCHHHHHH
Confidence 0 0 00 00 0 01235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++++++|+++..|+++
T Consensus 83 ~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 83 LMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 999999999999999999999999999986
No 94
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=1.7e-10 Score=97.32 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=86.7
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCcc
Q 016003 108 VMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPA 186 (397)
Q Consensus 108 ~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~ 186 (397)
+.++++++++.++++.|. +++..++|.+++ ++.+|+|++.|+.++..+..... ....
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~---------------------~~~~Giv~~~dl~~~~~~~~~~~-~~~~ 60 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEK---------------------GKLIGNISASDLKGLLLSPDDLL-LYRT 60 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECCC---------------------CcEEEEEEHHHhhhhhcCcchhh-cccc
Confidence 678999999999999988 678888877532 46789999999998764321111 1000
Q ss_pred C-------C-ccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 187 L-------S-IDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 187 ~-------t-i~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
. . ......+..++.++.+++++.+|++.|.++++ +.+||||++|+++|+||..||.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~--~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 61 ITFKELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKV--HRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred hhhhhhhhhcccccccccCCCeEECCCCcHHHHHHHHHHhCC--cEEEEECCCCCEEEEEEHHHHhc
Confidence 0 0 11123567889999999999999999999999 99999999899999987666654
No 95
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=3.3e-10 Score=98.14 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=88.5
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.+++++.+|++.|.+.++ +++||+|+ |+++|+++ .+|++.++......+.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~Vvd~-~~~~G~v~-------------------~~dl~~~~~~~~~~~~~~ 58 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKI--SGAPVLDG-GKLVGIVS-------------------ESDILKLLVTHDPSGNLW 58 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCC--CcceEeEC-CeEEEEec-------------------HHHHHHHHHhccCccccc
Confidence 357899999999999999999988 99999998 99999955 455544321100000000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
...........+..+ +. | ++.. + ........+...+|..++.+|.+++++.+++
T Consensus 59 ~~~~~~~~~~~~~~~---~~-----~--------------~~~~--~--~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 112 (143)
T cd04634 59 LPSPLELIELPLREF---IN-----W--------------EETK--R--ALTDAGKMKVRDIMTKKVITISPDASIEDAA 112 (143)
T ss_pred cCCcceeeeccchhe---ee-----h--------------HHHH--H--HHHHHhcCCHHHHcCCCCeEECCCCcHHHHH
Confidence 000000000000000 00 0 0000 0 0000001112234677899999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
..|.+++.+++||+++ |+++|+||..|+++
T Consensus 113 ~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 113 ELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 9999999999999998 89999999999985
No 96
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.18 E-value=3.7e-10 Score=116.81 Aligned_cols=121 Identities=22% Similarity=0.187 Sum_probs=100.8
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
+...+++++|. ++++++++++|+.+|++.|.++++.++||+|. +++++|+|+..|+... +
T Consensus 86 l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-------------~gklvGIVT~rDL~~~---~-- 145 (479)
T PRK07807 86 VAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-------------EGRPVGVVTEADCAGV---D-- 145 (479)
T ss_pred Hhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECC-------------CCeEEEEEeHHHHhcC---c--
Confidence 45567788874 67899999999999999999999999999996 3689999999998421 0
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
...+|+++|... ++++.++++|.+|++.|. +++++++|++++ ++++|
T Consensus 146 -------~~~~V~diMt~~----~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~---------------------g~lvG 193 (479)
T PRK07807 146 -------RFTQVRDVMSTD----LVTLPAGTDPREAFDLLEAARVKLAPVVDAD---------------------GRLVG 193 (479)
T ss_pred -------cCCCHHHhccCC----ceEECCCCcHHHHHHHHHhcCCCEEEEEcCC---------------------CeEEE
Confidence 125799999755 899999999999999999 789999987532 35789
Q ss_pred eecHHHHHHHHHhc
Q 016003 164 WLTQEDIIRFILSS 177 (397)
Q Consensus 164 IITq~DIi~~l~~~ 177 (397)
+||+.||++.....
T Consensus 194 IIT~~DIl~~~~~~ 207 (479)
T PRK07807 194 VLTRTGALRATIYT 207 (479)
T ss_pred EEEHHHHHHHhhCC
Confidence 99999999987643
No 97
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=4.2e-10 Score=94.94 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=91.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC---CCC----Chhhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS---NSL----SPSLA 91 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~---~l~----~~~~~ 91 (397)
+++.+++++|+.+|++.|.++++..+||++.+ ++++|+++..|+..++.... ... .....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-------------GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERM 68 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhh
Confidence 56789999999999999999999999999963 68999999999998764310 000 01123
Q ss_pred hcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHH
Q 016003 92 LKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDI 170 (397)
Q Consensus 92 ~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DI 170 (397)
...++.++|... ++++.+++++.++++.|. ++.+.++|...+ .+++.+|+||+.|+
T Consensus 69 ~~~~~~~~~~~~----~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-------------------~~~~~~Gvit~~di 125 (128)
T cd04632 69 LDLPVYDAMSSP----VITASPNDSVRDAVDRMLENDDSSVVVVTPD-------------------DDTKVVGILTKKDV 125 (128)
T ss_pred ccCcHHHHhcCC----CceECCCCcHHHHHHHHHhCCCCeEeEeccC-------------------CCCcEEEEEEhHhh
Confidence 456789998643 889999999999999999 677777765321 12467899999999
Q ss_pred HHH
Q 016003 171 IRF 173 (397)
Q Consensus 171 i~~ 173 (397)
+++
T Consensus 126 ~~~ 128 (128)
T cd04632 126 LRA 128 (128)
T ss_pred hcC
Confidence 864
No 98
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.16 E-value=8.4e-10 Score=107.62 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=121.8
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
-|...+|+|+|....++++++.++|++++++.+.+++.+.+||++.+ .++++|+|+..|++.++..+.
T Consensus 63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~------------~d~iiGiv~~kDll~~~~~~~ 130 (292)
T PRK15094 63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHIEGILMAKDLLPFMRSDA 130 (292)
T ss_pred ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC------------CCcEEEEEEHHHHHhHhhccC
Confidence 35678999999654479999999999999999999999999999853 268999999999997664211
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
. ..++.++|.. .+.+.++.++.++++.|. ++.|.++|++.. |...
T Consensus 131 ~--------~~~l~~l~r~-----~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~---------------------G~vi 176 (292)
T PRK15094 131 E--------AFSMDKVLRQ-----AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF---------------------GGVS 176 (292)
T ss_pred C--------cCCHHHHcCC-----CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC---------------------CCEE
Confidence 0 2347788842 458999999999999999 678888887532 3578
Q ss_pred eeecHHHHHHHHHhcc-CCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHH
Q 016003 163 CWLTQEDIIRFILSSI-SLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAI 215 (397)
Q Consensus 163 ~IITq~DIi~~l~~~~-~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m 215 (397)
|+||..||++.+.... ++........+.. .....+.+...+++.+..+.+
T Consensus 177 GiVTleDIle~ivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 177 GLVTIEDILELIVGEIEDEYDEEDDIDFRQ---LSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred EEeEHHHHHHHHhCCCccccccccccccEE---eCCCeEEEEeccCHHHHHHHh
Confidence 9999999999987532 1221111111222 234578899999998877765
No 99
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.16 E-value=2.1e-10 Score=109.97 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=86.4
Q ss_pred CCCcC-eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCC
Q 016003 194 IISTD-VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPP 272 (397)
Q Consensus 194 ~~~~~-v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 272 (397)
+|.++ +.++.+++++.+|++.|.+.++ +.+||+|++|+++|+++ ..|++......
T Consensus 160 im~~~~~~~v~~~~~v~~a~~~~~~~~~--~~~~Vvd~~g~~~Givt-------------------~~dl~~~~~~~--- 215 (268)
T TIGR00393 160 LMQTTDLPLIAPTTSFKDALLEMSEKRL--GSAIVCDENNQLVGVFT-------------------DGDLRRALLGG--- 215 (268)
T ss_pred HhCCCCCCcCCCCCcHHHHHHHHhhcCC--cEEEEEeCCCCEEEEEE-------------------cHHHHHHHhcC---
Confidence 78888 9999999999999999998888 99999999999999954 55554311000
Q ss_pred chhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcH
Q 016003 273 EDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSL 352 (397)
Q Consensus 273 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl 352 (397)
... ..+..++|..++++|.+++++
T Consensus 216 -----------------------------~~~---------------------------~~~v~~im~~~~~~v~~~~~l 239 (268)
T TIGR00393 216 -----------------------------GSL---------------------------KSEVRDFMTLGPKTFKLDALL 239 (268)
T ss_pred -----------------------------Ccc---------------------------cCcHHHhCCCCCeEECCCCcH
Confidence 000 000123467788999999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEe
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVT 381 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt 381 (397)
.++++.|.+++++++||+|++|+++|+|+
T Consensus 240 ~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 240 LEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99999999999999999999899999985
No 100
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.16 E-value=3.3e-10 Score=92.99 Aligned_cols=100 Identities=23% Similarity=0.228 Sum_probs=83.7
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
.+..+.+++++.++.+.|.+.+. ..+||+|+ +|+++|+ ++..|++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~~~~G~-------------------v~~~dl~~~~~------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSH--NGFPVVDSTEESPRLVGY-------------------ILRSQLVVALK------- 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCC--CCcceEcCCCCCCEEEEE-------------------EeHHHHHHHHH-------
Confidence 46788999999999999999888 89999998 6899999 44556543110
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMA 354 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~ 354 (397)
. +|..++.++.+++++.+
T Consensus 55 -------------------------------------------------~-------------~m~~~~~~v~~~~~l~~ 72 (105)
T cd04591 55 -------------------------------------------------N-------------YIDPSPFTVSPRTSLEK 72 (105)
T ss_pred -------------------------------------------------H-------------hccCCCceECCCCcHHH
Confidence 0 13457789999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++..|.+++.+++||++ +|+++|+||+.|++++
T Consensus 73 ~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 73 VHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred HHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 99999999999999996 5899999999999864
No 101
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=4.4e-10 Score=92.62 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=89.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++|+.+|++.|.++++..+||+|. +++++|+++..|++.++...... +.....+.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~Giv~~~dl~~~~~~~~~~-~~~~~~~~~v~~ 67 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-------------EGKYVGTISLTDILWKLKGLENL-DLERLVDLKVID 67 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-------------CCcEEEEEeHHHHHHHhhccCch-hHHHHhCCcHHH
Confidence 5789999999999999999999999999996 36899999999999987642211 011112578999
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... ++++.+++++.++++.|.+. ..++|.++ +++..|+||+.|++++
T Consensus 68 ~~~~~----~~~v~~~~~l~~a~~~~~~~-~~~~Vv~~---------------------~~~~~Gvit~~dil~~ 116 (116)
T cd04643 68 VMNTD----VPVIIDDADIEEILHLLIDQ-PFLPVVDD---------------------DGIFIGIITRREILKA 116 (116)
T ss_pred HhcCC----CceecCCCCHHHHHHHHhcC-CceeEEeC---------------------CCeEEEEEEHHHhhcC
Confidence 99654 88999999999999999842 34666542 2467899999999863
No 102
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=7e-10 Score=90.74 Aligned_cols=111 Identities=23% Similarity=0.264 Sum_probs=91.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++++++++.++.+|++.|.++++..+||+|.+ ++++|+++..|++.++..... .....++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~Giv~~~~l~~~~~~~~~-----~~~~~~~~~ 63 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-------------GRLVGIFSERDIVRKVALRGA-----SALDTPVSE 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-------------CCEEEEEehHHHHHHHhhcCC-----CccccCHHH
Confidence 56889999999999999999999999999963 689999999999988764211 112357888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.++.++.++++.|. .+.++++|.++ ++.+|+||..|+++|
T Consensus 64 ~~~~~----~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~----------------------~~~~Gvit~~di~~~ 113 (113)
T cd04623 64 IMTRN----VITVTPDDTVDEAMALMTERRFRHLPVVDG----------------------GKLVGIVSIGDVVKA 113 (113)
T ss_pred hcCCC----cEEECCCCcHHHHHHHHHHcCCCEeEEEeC----------------------CEEEEEEEHHHhhcC
Confidence 88544 889999999999999998 78888888753 356899999999864
No 103
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=5.6e-10 Score=94.87 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=91.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh----------
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP---------- 88 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~---------- 88 (397)
+++++++++++.+|++.|.++++.++||+|.+ ++++|+++..|+++++.........
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-------------GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD 68 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-------------CCEEEEEeHHHHHHHHhccCCcccccccccccccc
Confidence 46889999999999999999999999999963 6899999999999987642111100
Q ss_pred ----hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 89 ----SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 89 ----~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
.+....++.++|... ++.+.+++++.++++.|. .+.++++|.+. +..+|
T Consensus 69 ~~~~~~~~~~~v~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----------------------~~~iG 122 (132)
T cd04636 69 ESKIKKLLGKKVEEIMTKK----VITVDEDTTIEDVARIMSKKNIKRLPVVDD----------------------GKLVG 122 (132)
T ss_pred hHHHHHHcCCCHHHhccCC----ceEECCCCcHHHHHHHHHHCCCCeeEEEEC----------------------CEEEE
Confidence 011123788888654 788999999999999998 78888888753 35689
Q ss_pred eecHHHHHHH
Q 016003 164 WLTQEDIIRF 173 (397)
Q Consensus 164 IITq~DIi~~ 173 (397)
+||+.|+++|
T Consensus 123 vit~~dl~~~ 132 (132)
T cd04636 123 IISRGDIIRS 132 (132)
T ss_pred EEEHHHhhcC
Confidence 9999999876
No 104
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.14 E-value=8.9e-10 Score=91.03 Aligned_cols=113 Identities=24% Similarity=0.301 Sum_probs=91.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
|+..++++++++.+|++.|.++++..+||.|. +++++|+++..|+...+.+... ....+++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~dl~~~~~~~~~------~~~~~~~ 61 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDR-------------DGGVVGIITLPDLLRALEADEA------GEPSAVD 61 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-------------CCCEEEEEEHHHHHHHHhcccc------cccccHH
Confidence 35678899999999999999999999999996 3689999999999987754211 1134578
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|..+ ++++.+++++.++++.|. ++.++++|.++.. .+...|+||++||++
T Consensus 62 ~~~~~~----~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~-------------------~~~~~Gvit~~di~~ 114 (115)
T cd04593 62 EVATPP----LLTVHPDEPLAHALDRMASRGLRQLPVVDRGN-------------------PGQVLGLLTRENVLL 114 (115)
T ss_pred HhccCC----ceEECCCCCHHHHHHHHHHcCCceeeEEeCCC-------------------CCeEEEEEEhHHhhc
Confidence 888654 889999999999999999 7888998875321 146789999999975
No 105
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.14 E-value=5.8e-10 Score=92.62 Aligned_cols=120 Identities=24% Similarity=0.373 Sum_probs=86.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++++++++.+|++.|.+.+. +.+||+|++|+++|+++ ..|++.....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~--~~~~V~d~~~~~~G~v~-------------------~~~l~~~~~~--------- 51 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKI--RHLPVVDEEGRLVGIVT-------------------DRDLRDASPS--------- 51 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCC--CcccEECCCCcEEEEEE-------------------HHHHHHHhhh---------
Confidence 46789999999999999998888 99999999999999955 4554431100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.+........ .. . + ..+...+|..+++++.+++++.++++
T Consensus 52 ----~~~~~~~~~~---~~-----~--------------~--------------~~~v~~~~~~~~~~i~~~~~l~~~~~ 91 (121)
T cd04584 52 ----PFTTLSEHEL---YL-----L--------------L--------------KMPVKEIMTKDVITVHPLDTVEEAAL 91 (121)
T ss_pred ----hcccchhhhh---hh-----h--------------c--------------CcCHHHHhhCCCeEECCCCcHHHHHH
Confidence 0000000000 00 0 0 00011245668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|+ |+++|+||..||+++
T Consensus 92 ~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~~ 121 (121)
T cd04584 92 LMREHRIGCLPVVED-GRLVGIITETDLLRT 121 (121)
T ss_pred HHHHcCCCeEEEeeC-CEEEEEEEHHHhhcC
Confidence 999999999999998 899999999999863
No 106
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=9.1e-10 Score=91.97 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=92.2
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh----hhhhc
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP----SLALK 93 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~----~~~~~ 93 (397)
++++++++++++.+|++.|.++++..+||++. +++++|+++..|++.++......... .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-------------~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~ 68 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG-------------DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKP 68 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC-------------CCCEEEEEEHHHHHhhhcccccchhhhhhhccccc
Confidence 57899999999999999999999999999986 36899999999999876532100000 00123
Q ss_pred CChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 94 QPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 94 ~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
.++.++|... ++++.+++++.++++.|. ++.++++|.+++ +..+|+||+.|+++
T Consensus 69 ~~i~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------g~~~Gvit~~di~~ 123 (124)
T cd04600 69 ETVGDIMSPP----VVTVRPDTPIAELVPLLADGGHHHVPVVDED---------------------RRLVGIVTQTDLIA 123 (124)
T ss_pred ccHHHhccCC----CeeeCCCCcHHHHHHHHHhcCCCceeEEcCC---------------------CCEEEEEEhHHhhc
Confidence 4688888654 889999999999999999 788999887532 46789999999874
No 107
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.13 E-value=2.2e-10 Score=83.38 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=51.4
Q ss_pred hhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 337 MVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 337 ~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
++|.++++++++++++.++++.|.+++++++||+|++|+++|+||.+||++++.
T Consensus 3 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 3 DIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred ECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 357889999999999999999999999999999999999999999999999985
No 108
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=9.2e-10 Score=90.80 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=84.5
Q ss_pred eEEeCCCCCHHHHHHHHh-cC-CceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 108 VMHVEPSCSLLEAMDLML-GG-AQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 108 ~~~V~~~~sL~~al~~m~-~g-~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
+.++.++.++.++++.|. ++ .++++|.+++ ++.+|+++..|+++...+.. .
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~---------------------~~~~G~v~~~dl~~~~~~~~------~ 55 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNE---------------------GRYVGIISLADLRAIPTSQW------A 55 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCC---------------------CcEEEEEEHHHHHHHHHhhc------c
Confidence 678999999999999886 54 6777776431 46789999999998764211 1
Q ss_pred cCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 186 ALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
..++.+ +|.. .+.++.+++++.+|++.|.+++. +.+||+|++|+++|++|..||.+
T Consensus 56 ~~~v~~--~~~~~~~~~~v~~~~~l~~a~~~~~~~~~--~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQ--VMTPAAKLVTVLSEESLAEVLKLLEEQGL--DELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhh--hhcccccceEECCCCcHHHHHHHHHHCCC--CeeEEEcCCCcEEEEEeccceec
Confidence 344555 5653 37799999999999999999999 99999998899999988777654
No 109
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.13 E-value=1.7e-09 Score=108.88 Aligned_cols=193 Identities=20% Similarity=0.251 Sum_probs=148.1
Q ss_pred CCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCCh
Q 016003 17 KPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPV 96 (397)
Q Consensus 17 k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V 96 (397)
+++++.+.+..++-+|...|.++++.++||.|.+ .++++.+++..-|+.|+-...........+..++
T Consensus 161 ~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~------------~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~ 228 (381)
T KOG1764|consen 161 KPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPE------------TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSL 228 (381)
T ss_pred CCCceeecCcHHHHHHHHHHHhCCccceeeeccc------------ccceeeehhHHHHHHHHHHhhcccccHHHhhCCH
Confidence 3556999999999999999999999999999953 2589999999999999975322212345667777
Q ss_pred hhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHH
Q 016003 97 SVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFIL 175 (397)
Q Consensus 97 ~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~ 175 (397)
.++--- ..+.+..+..++++.+|++.|. +++..+||++.. +..+++++..|+.....
T Consensus 229 ~dl~ig-~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~---------------------g~~v~~~s~~Dv~~l~~ 286 (381)
T KOG1764|consen 229 SDLGIG-TWSNIASISEDTPVIEALKIMSERRISALPVVDEN---------------------GKKVGNYSRFDVIHLAR 286 (381)
T ss_pred HHhCcc-hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCC---------------------Cceecceehhhhhhhhh
Confidence 776421 1334788999999999999999 799999998643 33488999999987766
Q ss_pred hccCCCCCCccCC-ccc----cCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhH
Q 016003 176 SSISLFSPIPALS-IDS----LGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETV 250 (397)
Q Consensus 176 ~~~~~l~~l~~~t-i~~----L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~ 250 (397)
+.. +..+ ..+ +++ .++=...|+++.++.++..++..|..+++ ..+.|||++|+++|+
T Consensus 287 ~~~--~~~~-~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~v--HRl~VVd~~~~l~Gv------------- 348 (381)
T KOG1764|consen 287 EGT--YNNL-DLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRV--HRLWVVDEDGVLVGV------------- 348 (381)
T ss_pred cCc--cCcc-chhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCc--eEEEEEcCCCcEEEE-------------
Confidence 431 2111 111 222 12223459999999999999999999999 999999999999999
Q ss_pred HHHHhhcChhhhhhhhc
Q 016003 251 AAAITTLSAGDLMAYID 267 (397)
Q Consensus 251 ~~~~~~ls~~Dl~~~~~ 267 (397)
+|-+|+..++.
T Consensus 349 ------vSLsDil~~l~ 359 (381)
T KOG1764|consen 349 ------ISLSDILSYLV 359 (381)
T ss_pred ------eeHHHHHHHHH
Confidence 56788877553
No 110
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.12 E-value=4.2e-10 Score=108.92 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=95.1
Q ss_pred CCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 194 IIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 194 ~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
+|+ .+.....+++++.+-.++-.+.+. +..||||...+++|++ +.+|...-.+
T Consensus 193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~--sRfPVvn~~~kvvGvV-------------------t~rDv~~~~~---- 247 (432)
T COG4109 193 IMTPLEDTSYLRETDTVEDWLDLVEKTGH--SRFPVVNRSMKVVGVV-------------------TMRDVLDKKP---- 247 (432)
T ss_pred hccccccceeccccccHHHHHHHHHHcCC--CccceecccceEEEEE-------------------EehhhhcCCC----
Confidence 566 567778899999999999999999 9999999999999994 4566543100
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCc
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSS 351 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~s 351 (397)
+..+ ..+|+++++|+++.+|
T Consensus 248 ----------------------------------------------------~t~i--------eKVMtknp~tv~~~ts 267 (432)
T COG4109 248 ----------------------------------------------------STTI--------EKVMTKNPITVRAKTS 267 (432)
T ss_pred ----------------------------------------------------CccH--------HHHhccCCeeecccch
Confidence 0000 1258999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
++.++.+|+-.++.-+||||++.+++||||+.|+|+.+...
T Consensus 268 VAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 268 VASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred HHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998654
No 111
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=8.8e-10 Score=92.19 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=93.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC-----hhhhhc
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS-----PSLALK 93 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~-----~~~~~~ 93 (397)
++++++++.++.+|++.|.++++..+||+|.+ .++++|+++..|++.++.+...... ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~------------~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 69 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG------------TGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAIN 69 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCC------------CCEEEEEEEHHHHHHHhhccchhccccccccchhhh
Confidence 57889999999999999999999999999962 1689999999999988864221100 011234
Q ss_pred CChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 94 QPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 94 ~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
.++.++|... ++.+.+++++.++++.|. .+.+.++|.+++ +...|+||..||++
T Consensus 70 ~~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~---------------------~~~~Gvit~~di~~ 124 (125)
T cd04631 70 EPVRSIMTRN----VITITPDDSIKDAAELMLEKRVGGLPVVDDD---------------------GKLVGIVTERDLLK 124 (125)
T ss_pred cCHHHHhcCC----ceEeCCCCcHHHHHHHHHHcCCceEEEEcCC---------------------CcEEEEEEHHHhhc
Confidence 6788888654 899999999999999999 678888876532 35789999999987
Q ss_pred H
Q 016003 173 F 173 (397)
Q Consensus 173 ~ 173 (397)
|
T Consensus 125 ~ 125 (125)
T cd04631 125 A 125 (125)
T ss_pred C
Confidence 4
No 112
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.12 E-value=1.3e-10 Score=119.74 Aligned_cols=176 Identities=16% Similarity=0.221 Sum_probs=132.8
Q ss_pred cCChhhhccCCCCCceEEeCCCCCHHHHHHHHhc------CCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 93 KQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLG------GAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 93 ~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~------g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
..+++++|... +..++++.++.++++.|.+ +...++|.++ +++..|+|+
T Consensus 130 e~tvg~iMt~~----~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---------------------~~~l~GvV~ 184 (449)
T TIGR00400 130 DDSAGRIMTIE----YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---------------------SKHLKGVLS 184 (449)
T ss_pred cchHHHhCcCc----eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---------------------CCeEEEEEE
Confidence 46799999755 8999999999999998862 2223343332 246789999
Q ss_pred HHHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCc
Q 016003 167 QEDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCC 246 (397)
Q Consensus 167 q~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~ 246 (397)
..|++.. ....++++ +|+++++++.+++++.+|++.|.++++ .++||||++|+++|+|
T Consensus 185 l~dLl~a----------~~~~~v~~--im~~~~~~v~~~~~~~eal~~m~~~~~--~~lpVVD~~g~lvGiI-------- 242 (449)
T TIGR00400 185 IRDLILA----------KPEEILSS--IMRSSVFSIVGVNDQEEVARLIQKYDF--LAVPVVDNEGRLVGIV-------- 242 (449)
T ss_pred HHHHhcC----------CCCCcHHH--HhCCCCeeECCCCCHHHHHHHHHHcCC--CEEeEEcCCCeEEEEE--------
Confidence 9998641 12345665 788899999999999999999999988 9999999999999994
Q ss_pred chhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCC
Q 016003 247 DETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGK 326 (397)
Q Consensus 247 ~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (397)
+..|++..+... . ++
T Consensus 243 -----------t~~Dil~~l~~~-----------------~----------------------------~e--------- 257 (449)
T TIGR00400 243 -----------TVDDIIDVIQSE-----------------A----------------------------TE--------- 257 (449)
T ss_pred -----------EHHHHHHHHHhh-----------------h----------------------------HH---------
Confidence 566776533110 0 01
Q ss_pred ccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhh
Q 016003 327 HSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395 (397)
Q Consensus 327 ~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~ 395 (397)
++|....+++.+++.+..++.+|.++|+..++|. .+.|++| ..++..|...+++
T Consensus 258 ----------d~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~l~~ 311 (449)
T TIGR00400 258 ----------DFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDLLLS 311 (449)
T ss_pred ----------HHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHHHHH
Confidence 1233345566678899999999999999999886 6889999 9999988776654
No 113
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=4.8e-10 Score=92.98 Aligned_cols=113 Identities=20% Similarity=0.280 Sum_probs=84.1
Q ss_pred CeEEEeCCCcHHHHHHHHHhcC-CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSL-FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++.++++++++.+|++.|.+.+ + +.+||+|+ |+++|++ +..|++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vvd~-~~~~G~v-------------------~~~~l~~~~~~~------- 52 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDL--SALAVVDD-GRPVGLI-------------------MREALMELLSTP------- 52 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCc--cEEEEEEC-CeeEEEE-------------------EHHHHHHHHhch-------
Confidence 5677899999999999998876 7 89999999 9999994 456655422100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
+ -..+ .. . ....+.|..++++|.+++++.+++
T Consensus 53 -----~-----~~~~---~~---------------------------~--------~~v~~~~~~~~~~v~~~~~~~~~~ 84 (119)
T cd04598 53 -----Y-----GRAL---YG---------------------------K--------KPVSEVMDPDPLIVEADTPLEEVS 84 (119)
T ss_pred -----h-----hHHH---Hc---------------------------C--------CcHHHhcCCCcEEecCCCCHHHHH
Confidence 0 0000 00 0 001134677899999999999999
Q ss_pred HHHHHcCCcE---EEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTY---VWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~r---l~VVd~~~~lvGvVt~~DIl~ 387 (397)
..|.+++..+ .|||+++|+++|+||..|+++
T Consensus 85 ~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 85 RLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999998754 479988899999999999986
No 114
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=1.3e-09 Score=89.70 Aligned_cols=107 Identities=25% Similarity=0.259 Sum_probs=89.2
Q ss_pred eEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhhh
Q 016003 20 LRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVL 99 (397)
Q Consensus 20 li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~l 99 (397)
.+++++++++.+|++.|.++++..+||.+.+ ++++|+++..|++..+.+.. ..+.++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~~ 63 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-------------GRLLGTVTDGDIRRALLKGL-------SLDDPVSEV 63 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-------------CCEEEEEEcHHHHHHHhcCC-------CcCCCHHHh
Confidence 4678999999999999999999999999963 68999999999988765421 124578899
Q ss_pred ccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHH
Q 016003 100 LPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDII 171 (397)
Q Consensus 100 m~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi 171 (397)
|... +..+.+++++.++++.|. ++.++++|++++ ++.+|+||+.||+
T Consensus 64 ~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvit~~di~ 111 (113)
T cd04607 64 MNRN----PITAKVGSSREEILALMRERSIRHLPILDEE---------------------GRVVGLATLDDLL 111 (113)
T ss_pred hcCC----CEEEcCCCCHHHHHHHHHHCCCCEEEEECCC---------------------CCEEEEEEhHHhc
Confidence 8644 789999999999999999 789999987532 4578999999986
No 115
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.11 E-value=3.1e-10 Score=115.83 Aligned_cols=124 Identities=27% Similarity=0.280 Sum_probs=105.5
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
-++|++++. .+.+++++.+|+.+|...|.++|++++-|++.+ +...||||..|+...+..+.
T Consensus 148 ~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-------------~~~~GIvT~~dl~~~v~~~g--- 209 (610)
T COG2905 148 LTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-------------GPLLGIVTRKDLRSRVIADG--- 209 (610)
T ss_pred HHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-------------CCccceeehHHHHHHHHhcC---
Confidence 467888874 567999999999999999999999999998864 57999999999999876532
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
.-...+|+++|+.+ +++|++++-+++|+-+|+ +++||++|..+ |++.|||
T Consensus 210 ---~~~~~~V~evmT~p----~~svd~~~~~feAml~m~r~~I~hl~V~e~----------------------gq~~Gil 260 (610)
T COG2905 210 ---RSKTQKVSEVMTSP----VISVDRGDFLFEAMLMMLRNRIKHLPVTED----------------------GQPLGIL 260 (610)
T ss_pred ---CCcccchhhhhccC----ceeecCcchHHHHHHHHHHhCCceeeeecC----------------------CeeeEEe
Confidence 12357899999755 999999999999999999 89999998753 5778999
Q ss_pred cHHHHHHHHHhc
Q 016003 166 TQEDIIRFILSS 177 (397)
Q Consensus 166 Tq~DIi~~l~~~ 177 (397)
|.+||++.+..|
T Consensus 261 t~~dIl~l~s~~ 272 (610)
T COG2905 261 TLTDILRLFSQN 272 (610)
T ss_pred eHHHHHHhhCCC
Confidence 999999988644
No 116
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.11 E-value=6.6e-10 Score=89.74 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=80.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||+|. +++++|+++..|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-------------~~~~~Giv~~~dl~~~~------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-------------DGKLSGIITERDLIAKS------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-------------CCCEEEEEEHHHHhcCC-------------------
Confidence 5788999999999999999999999999996 36899999999998531
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
. ++++.+++++.++++.|. ++.++++|..++ +.+.|+||++|+++
T Consensus 50 ----~----~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~---------------------~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----E----VVTATKRTTVSECAQKMKRNRIEQIPIINGN---------------------DKLIGLLRDHDLLK 95 (96)
T ss_pred ----C----cEEecCCCCHHHHHHHHHHhCCCeeeEECCC---------------------CcEEEEEEHHHhhc
Confidence 0 688999999999999998 789999887532 45789999999975
No 117
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.11 E-value=7.7e-10 Score=117.55 Aligned_cols=129 Identities=14% Similarity=0.158 Sum_probs=106.0
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
.+..++|+|+| +++.+++++++++.+|++.|.+++...+||+|+ +++++|+++..|+.+.+..++
T Consensus 443 ~L~~~~V~dim--~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-------------~g~lvGiVt~~dL~~~l~~~~ 507 (574)
T PRK01862 443 RLRTTQMRELI--QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD-------------DGRFRGAVALKDITSDLLDKR 507 (574)
T ss_pred HHhhCcHHHHh--cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC-------------CCeEEEEEEHHHHHHHhhccc
Confidence 46678899999 456788999999999999999999999999996 368999999999998664321
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
. ..+.++.++|... ++++++++++.++++.|. ++.++++|+++++ +++..
T Consensus 508 ~------~~~~~v~dim~~~----~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~-------------------~~~li 558 (574)
T PRK01862 508 D------TTDKTAADYAHTP----FPLLTPDMPLGDALEHFMAFQGERLPVVESEA-------------------SPTLA 558 (574)
T ss_pred c------cccchHHHhccCC----CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCC-------------------CCeEE
Confidence 1 1235788999654 789999999999999999 7899999986431 13678
Q ss_pred eeecHHHHHHHHHh
Q 016003 163 CWLTQEDIIRFILS 176 (397)
Q Consensus 163 ~IITq~DIi~~l~~ 176 (397)
|+||+.|+++.+.+
T Consensus 559 GvIt~~DIl~~l~~ 572 (574)
T PRK01862 559 GVVYKTSLLDAYRR 572 (574)
T ss_pred EEEEHHHHHHHHHh
Confidence 99999999998864
No 118
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=1.2e-09 Score=88.90 Aligned_cols=104 Identities=23% Similarity=0.344 Sum_probs=83.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.++++.|.+.+. +.+||+|++|+++|+++ ..|++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~v~-------------------~~~l~~~~~---------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKV--SGVPVVKKSGELVGIIT-------------------RKDLLRNPE---------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCC--CeEEEEcCCCcEEEEEE-------------------HHHHHhccc----------
Confidence 57889999999999999998888 99999998899999944 444432000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+ .. ....|..++.++.+++++.+++.
T Consensus 51 ---------------------------------------~-------~~--------~~~~~~~~~~~v~~~~~l~~~~~ 76 (106)
T cd04638 51 ---------------------------------------E-------EQ--------LALLMTRDPPTVSPDDDVKEAAK 76 (106)
T ss_pred ---------------------------------------c-------ch--------HHHHhcCCCceECCCCCHHHHHH
Confidence 0 00 00124557889999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|+ |+++|+||..|+++
T Consensus 77 ~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 77 LMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 999999999999996 79999999999985
No 119
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=8.1e-10 Score=90.76 Aligned_cols=113 Identities=20% Similarity=0.196 Sum_probs=91.2
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++++.+|++.|.++++..+||++. .++++|+++..|+++.+.+... ......++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-------------~~~~~G~v~~~~l~~~~~~~~~----~~~~~~~v~ 63 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-------------NGNLVGFLSEQDCLKQLLESSY----HCDGVATVR 63 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECC-------------CCeEEEEeehHHHHHHhhhhhh----ccCCCccHH
Confidence 35788999999999999999999999999996 3689999999999987764211 012345788
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++|... ++.+.+++++.++++.|. ++.++++|.++ +..+|+||+.||+++
T Consensus 64 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~Gvit~~di~~~ 114 (114)
T cd04629 64 DIMTTE----VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD----------------------GKLVGQISRRDVLRA 114 (114)
T ss_pred HHhccC----ceEECCCCcHHHHHHHHHHhCCCccCEEEC----------------------CEEEEEEEHHHHhcC
Confidence 998643 788999999999999999 67888877642 356899999999863
No 120
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.09 E-value=2.3e-09 Score=87.88 Aligned_cols=109 Identities=23% Similarity=0.254 Sum_probs=90.0
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+.++++++.++.+|++.|.+++...+||.|. ++++|+++..|++..+.+... ....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~ 61 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--------------DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE 61 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--------------CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH
Confidence 4678899999999999999999999999995 479999999999987654211 12467888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... ++.+.+++++.++++.|. ++.++++|.++ +..+|+||+.|+++|
T Consensus 62 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~G~it~~dl~~~ 111 (111)
T cd04589 62 IATFP----LITVDPDDFLFNALLLMTRHRIHRVVVREG----------------------GEVVGVLEQTDLLSF 111 (111)
T ss_pred HhCCC----cEEECCCCcHHHHHHHHHHhCccEEEEeeC----------------------CEEEEEEEhHHhhcC
Confidence 88644 889999999999999999 68888888642 356889999999875
No 121
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=1.3e-09 Score=89.17 Aligned_cols=109 Identities=27% Similarity=0.301 Sum_probs=90.2
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+.+.+.+++|+.+|++.|.+++...+||++.+ ++++|+++..|+.+++.++. .+.++.+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-------------~~~~G~v~~~~l~~~~~~~~--------~~~~v~~ 60 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-------------GHLVGLLTRDDLIRALAEGG--------PDAPVRG 60 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-------------CcEEEEeeHHHHHHHHHhcC--------CCCcHHH
Confidence 45778999999999999999999999999963 68999999999998876421 1357889
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.+++++.++++.|. ++.++++|..+. ++.+|+||..|+.++
T Consensus 61 ~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~G~it~~dl~~~ 111 (111)
T cd04639 61 VMRRD----FPTVSPSATLDAVLRLMQQGGAPAVPVVDGS---------------------GRLVGLVTLENVGEL 111 (111)
T ss_pred HhcCC----CcEECCCCcHHHHHHHHHhcCCceeeEEcCC---------------------CCEEEEEEHHHhhcC
Confidence 98644 889999999999999999 678888887531 357899999999764
No 122
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.07 E-value=1.8e-09 Score=88.93 Aligned_cols=106 Identities=30% Similarity=0.431 Sum_probs=87.3
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
.++++.++.++.+|...|. +++.+++|... .+.+|++|..|+++.+.......
T Consensus 8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----------------------~~l~Giit~~di~~~~~~~~~~~---- 61 (117)
T COG0517 8 DVITVKPDTSVRDALLLMSENGVSAVPVVDD----------------------GKLVGIITERDILRALAAGGKRL---- 61 (117)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----------------------CEEEEEEEHHHHHHHHhccCCcc----
Confidence 3899999999999999999 78888877642 14688999999999987532211
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHh-cCCCCCEEEEEcCCC-cEEEeeccCcc
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISR-SLFDQTSVAVVDSDG-FLIGEISPSTL 243 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~-~~i~~s~vpVVd~~g-~lvG~is~~dl 243 (397)
.++.+ +|+++++++.+++++.+|++.|.. +++ +++||+++++ +++|++|.+|+
T Consensus 62 -~~v~~--v~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 62 -LPVKE--VMTKPVVTVDPDTPLEEALELMVERHKI--RRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred -ccHHH--hccCCcEEECCCCCHHHHHHHHHHHcCc--CeEEEEECCCCeEEEEEEHHHc
Confidence 13444 688899999999999999999999 799 9999999996 99999776554
No 123
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.07 E-value=1.8e-09 Score=88.43 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=90.9
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhh-cCCh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLAL-KQPV 96 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~-~~~V 96 (397)
+++.++++++++.+|++.|.++++..+||+|. +++++|+++..|+.+++.+.. .. ..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------------~~~~~G~v~~~~l~~~~~~~~-------~~~~~~v 60 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDD-------------DGRLVGIVSLDDIREILFDPS-------LYDLVVA 60 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECC-------------CCCEEEEEEHHHHHHHHhccc-------ccccEEH
Confidence 45788999999999999999999999999996 368999999999998765421 11 2578
Q ss_pred hhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 97 SVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 97 ~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
.++|... ++++.+++++.++++.|. .+.++++|.... .+..+|+||+.|+++
T Consensus 61 ~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------------------~~~~~Gvvt~~di~~ 113 (114)
T cd04613 61 SDIMTKP----PVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--------------------PGKLLGILSRSDLLS 113 (114)
T ss_pred HHhccCC----CcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--------------------CCEEEEEEEhHHhhc
Confidence 8999654 889999999999999998 688888887531 135789999999875
No 124
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.07 E-value=1e-09 Score=113.26 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=91.1
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..++.+ +|.+++.++.+++++.+|++.|.++++ +.+||+|++|+++|+| +..|++..
T Consensus 334 ~~~v~~--im~~~~~~v~~~~tl~ea~~~m~~~~~--~~~~Vvd~~~~~~Giv-------------------t~~dl~~~ 390 (454)
T TIGR01137 334 NATVKD--LHLPAPVTVHPTETVGDAIEILREYGF--DQLPVVTEAGKVLGSV-------------------TLRELLSA 390 (454)
T ss_pred cCCHHH--hCcCCCeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCeEEEEE-------------------EHHHHHHH
Confidence 344544 788999999999999999999999988 9999999989999994 56666542
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
+... . .. .. .....+|..++.+
T Consensus 391 ~~~~--------------------------~----~~--------------------~~--------~~v~~im~~~~~~ 412 (454)
T TIGR01137 391 LFAG--------------------------K----AN--------------------PD--------DAVSKVMSKKFIQ 412 (454)
T ss_pred Hhcc--------------------------C----CC--------------------cC--------CCHHHhcCCCCeE
Confidence 2100 0 00 00 0011346678889
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+++++++.+++.+|.+++ .+||+++++++|+||+.||+++|
T Consensus 413 v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 413 IGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred ECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 999999999999998764 46666678999999999999986
No 125
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.07 E-value=2.3e-09 Score=92.19 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=90.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC------------
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL------------ 86 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~------------ 86 (397)
++.++++++++.+|++.|.++++..+||+|. .++++|+++..|+++++.......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-------------~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-------------NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKA 68 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-------------CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhc
Confidence 3578899999999999999999999999996 368999999999999875321100
Q ss_pred -C----hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 87 -S----PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 87 -~----~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
. .......+++++|... ++.+.+++++.++++.|. ++.++++|..+ +.
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~----------------------~~ 122 (135)
T cd04621 69 GQKRYRYVKEVPLVAEDIMTEE----IITVSPNDDVVDAAKLMLEANISGLPVVDN----------------------DN 122 (135)
T ss_pred ccccccccccccccHHHhcCCC----CeEECCCCCHHHHHHHHHHcCCCEEEEEeC----------------------CE
Confidence 0 0011245799999644 789999999999999998 77888888753 35
Q ss_pred eeeeecHHHHHH
Q 016003 161 EFCWLTQEDIIR 172 (397)
Q Consensus 161 ~~~IITq~DIi~ 172 (397)
++|+||+.|+++
T Consensus 123 ~~Gvit~~di~~ 134 (135)
T cd04621 123 IVGVITKTDICR 134 (135)
T ss_pred EEEEEEHHHHhh
Confidence 789999999976
No 126
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.06 E-value=3.7e-09 Score=86.46 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=88.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||.+.+ .++++|+++..|++.++.++.. ..++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~------------~~~~~G~v~~~~l~~~~~~~~~--------~~~~~~ 61 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD------------LDNIIGVVHVKDLLRALAEGEE--------DLDLRD 61 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC------------CceEEEEEEHHHHHHHHHcCCC--------cCCHHH
Confidence 57899999999999999999999999999963 1689999999999998754211 146677
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++. ++..+.+++++.++++.|. ++.+.++|.+++ +..+|+||+.|+++
T Consensus 62 ~~~-----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvit~~di~~ 110 (111)
T cd04590 62 LLR-----PPLFVPESTPLDDLLEEMRKERSHMAIVVDEY---------------------GGTAGLVTLEDILE 110 (111)
T ss_pred Hhc-----CCeecCCCCcHHHHHHHHHhcCCcEEEEEECC---------------------CCEEEEeEHHHhhc
Confidence 663 2688999999999999999 788888887532 35789999999874
No 127
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.06 E-value=3.5e-09 Score=109.53 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=98.8
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
+...+++++|. ++.+++++++|+.+|++.|.++++..+||+|. ++++|+|+.+|+...
T Consensus 85 v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--------------gklvGIVT~rDL~~~------ 142 (475)
T TIGR01303 85 VAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--------------DRPVGLVTDSDLLGV------ 142 (475)
T ss_pred Hhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--------------CEEEEEEEHHHhhcC------
Confidence 44566778874 56789999999999999999999999999984 489999999998311
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
....+++++|... ++++.+++++.+|+++|. +++++++|++++ +.++|
T Consensus 143 ------~~~~~V~dIMt~~----litv~~~~sL~eAl~lM~~~~i~~LPVVD~~---------------------g~LvG 191 (475)
T TIGR01303 143 ------DRFTQVRDIMSTD----LVTAPADTEPRKAFDLLEHAPRDVAPLVDAD---------------------GTLAG 191 (475)
T ss_pred ------CCCCCHHHHccCC----ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CeEEE
Confidence 0135799999754 899999999999999999 789999887532 35789
Q ss_pred eecHHHHHHHHHhc
Q 016003 164 WLTQEDIIRFILSS 177 (397)
Q Consensus 164 IITq~DIi~~l~~~ 177 (397)
+||+.||++.....
T Consensus 192 IIT~~DLl~~~~~~ 205 (475)
T TIGR01303 192 ILTRTGALRATIYT 205 (475)
T ss_pred EEEHHHHHHHHhCC
Confidence 99999999987643
No 128
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.06 E-value=4.3e-09 Score=85.97 Aligned_cols=108 Identities=22% Similarity=0.282 Sum_probs=89.2
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++.+++++++.+|++.|.++++..+||.+. ++++|+++..|++++..+... ..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~~l~~~~~~~~~--------~~~v~ 58 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD--------------GKLVGIVTLSDIAHAIARGLE--------LAKVK 58 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEHHHHHHHHhcccc--------ccCHH
Confidence 46788999999999999999999999999995 489999999999987654211 15688
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|.. ++.++.+++++.++++.|. .+.+.++|..+. ++..|+||..|+++
T Consensus 59 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~G~i~~~dl~~ 109 (110)
T cd04588 59 DVMTK----DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE---------------------GRPVGIITRTDILR 109 (110)
T ss_pred HHhcC----CceEECCCCCHHHHHHHHHhcCCCEEEEECCC---------------------CCEEEEEEhHHhhc
Confidence 88854 3899999999999999998 678888887531 35688999999875
No 129
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.06 E-value=3.3e-09 Score=110.53 Aligned_cols=168 Identities=23% Similarity=0.186 Sum_probs=120.9
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP 88 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~ 88 (397)
.++++|. ++++++++++|+.+|+++|.++++..+||+|. +++++|+|+..|+....
T Consensus 88 ~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-------------~g~lvGiVt~~DL~~~~--------- 143 (486)
T PRK05567 88 RSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDE-------------NGKLVGIITNRDVRFET--------- 143 (486)
T ss_pred hhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-------------CCEEEEEEEHHHhhhcc---------
Confidence 3556663 67899999999999999999999999999995 37999999999996421
Q ss_pred hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecH
Q 016003 89 SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQ 167 (397)
Q Consensus 89 ~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq 167 (397)
....++.++|.. .+++++.+++++.++++.|. ++++.++|.+++ +...|+||.
T Consensus 144 --~~~~~V~dim~~---~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~---------------------g~lvGiIT~ 197 (486)
T PRK05567 144 --DLSQPVSEVMTK---ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN---------------------GRLKGLITV 197 (486)
T ss_pred --cCCCcHHHHcCC---CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------CcEEEEEEh
Confidence 123579999961 34899999999999999999 789998887632 467899999
Q ss_pred HHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC-CCcEEEee
Q 016003 168 EDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS-DGFLIGEI 238 (397)
Q Consensus 168 ~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~i 238 (397)
.||++.+.. .... ...-..| .-...+.+.++ ..++++.|.++++ . +.++|. +|+..|.+
T Consensus 198 ~DLl~~~~~-p~a~----~d~~g~l--~V~aai~~~~~--~~e~a~~L~~agv--d-vivvD~a~g~~~~vl 257 (486)
T PRK05567 198 KDIEKAEEF-PNAC----KDEQGRL--RVGAAVGVGAD--NEERAEALVEAGV--D-VLVVDTAHGHSEGVL 257 (486)
T ss_pred HHhhhhhhC-CCcc----cccCCCE--EEEeecccCcc--hHHHHHHHHHhCC--C-EEEEECCCCcchhHH
Confidence 999988632 1100 0000011 11223333342 2788999999999 6 556664 46666653
No 130
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=3.3e-09 Score=86.89 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=90.0
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++.++++++++.+|++.|.++++..+||.|.+ ++++|+++..|++.++.... ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~~l~~~~~~~~-------~~~~~v~~ 61 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-------------ERPIGIVTERDIVRAVAAGI-------DLDTPVSE 61 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-------------CCEEEEeeHHHHHHHHhccC-------CCccCHHH
Confidence 56789999999999999999999999999963 68999999999998876532 12457888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... ++.+.+++++.++++.|. ++...++|.+.+ +...|+||..|+++
T Consensus 62 ~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------g~~~Gilt~~dl~~ 111 (112)
T cd04624 62 IMTRD----LVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG---------------------GELVGVISIRDLVR 111 (112)
T ss_pred hccCC----CEEECCCCcHHHHHHHHHHcCccEEEEEcCC---------------------CcEEEEEEHHHhcc
Confidence 88644 889999999999999998 678888776532 35678999999874
No 131
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.06 E-value=1.9e-09 Score=88.54 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=86.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCcc
Q 016003 108 VMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPA 186 (397)
Q Consensus 108 ~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~ 186 (397)
.+.+.++.++.++++.|. .+.++++|.+++ ++.+|++|+.|+.+.+.+. + .+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~---------------------~~~~G~v~~~dl~~~~~~~-~---~~~~ 57 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK---------------------KRLVGIITRYDVLSYALES-E---ELKD 57 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC---------------------CCEEEEEEHHHHHHhhhhh-h---hhcC
Confidence 577899999999999998 677787776532 3567899999999865432 1 1223
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
.++.+ +|..++.++.+++++.++++.|.+.+. ..+||+|++|+++|+||..||.
T Consensus 58 ~~i~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~--~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 58 AKVRE--VMNSPVITIDANDSIAKARWLMSNNNI--SRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred CcHHH--hccCCceEECCCCcHHHHHHHHHHcCC--CeeeEECCCCeEEEEEEHHHhh
Confidence 45655 678889999999999999999999988 9999999999999997765553
No 132
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.05 E-value=2e-09 Score=89.65 Aligned_cols=113 Identities=29% Similarity=0.350 Sum_probs=87.8
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCC---
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFS--- 182 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~--- 182 (397)
++.++.+++++.++++.|. .++++++|.+.+ ++.+|++|..|+.+++..+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~G~v~~~~l~~~~~~~~~~~~~~~ 60 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED---------------------GKLVGLLTQRDLLRAALSSLSDNGEES 60 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC---------------------CCEEEEEEHHHHHHHhccccccccccc
Confidence 4778999999999999998 678888876431 467899999999988754221100
Q ss_pred --CCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 183 --PIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 183 --~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
.....++.+ +|..++.++.+++++.++++.|.+.+. ..+||+|++|+++|+||..||.
T Consensus 61 ~~~~~~~~v~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 61 LTKERDVPVAE--VMKTDVLTVTPDTPLREAAEIMVENKI--GCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred cccccCcCHHH--hhCCCCeEeCCCCcHHHHHHHHHHcCC--CeEEEEcCCCCEEEEEEHHHhh
Confidence 112344554 678889999999999999999999988 9999999889999997655543
No 133
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.05 E-value=2.6e-09 Score=87.62 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=86.3
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
+++.+.+++++.++++.|. ++.++++|.+. ++.+|+||..|+++.+.+.. ... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~G~v~~~dl~~~~~~~~--~~~-~ 56 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----------------------NKLVGIFTSKDIALRVVAQG--LDP-E 56 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----------------------CEEEEEEEhHHHHHHHHhcC--CCc-C
Confidence 4778999999999999988 67777777642 35678999999997665421 111 1
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
..++.+ +|..++.++.+++++.++++.|.+++. ..+||++++|+++|+||..||.
T Consensus 57 ~~~v~~--i~~~~~~~v~~~~~l~~~~~~~~~~~~--~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 57 STLVER--VMTPNPVCATSDTPVLEALHLMVQGKF--RHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred cCCHHH--hcCCCCeEEcCCCCHHHHHHHHHHcCC--CcccEECCCCCEEEEEEHHHhc
Confidence 245665 678889999999999999999999988 9999999889999997766554
No 134
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.05 E-value=4e-09 Score=86.30 Aligned_cols=109 Identities=25% Similarity=0.289 Sum_probs=89.9
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++.+++++.++.+|++.|.++++..+||.+. ++++|+++..|++.++..+. .....++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--------------~~~~G~v~~~~l~~~~~~~~------~~~~~~i~ 60 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD--------------GRLVGIVTDRDLRNRVVAEG------LDPDTPVS 60 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--------------CEEEEEEEhHHHHHHHhccC------CCccCCHH
Confidence 46788999999999999999999999999995 48999999999998765421 11235788
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... ++.+.++++|.++++.|. .+.++++|.+. +..+|+||..|+++
T Consensus 61 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~Giit~~di~~ 110 (111)
T cd04800 61 EVMTAP----PITIPPDATVFEALLLMLERGIHHLPVVDD----------------------GRLVGVISATDLLR 110 (111)
T ss_pred HHhCCC----CeEECCCCcHHHHHHHHHHcCCCeeeEeEC----------------------CEEEEEEEHHHhhc
Confidence 888654 889999999999999999 78888887642 35689999999975
No 135
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=3e-09 Score=87.15 Aligned_cols=108 Identities=23% Similarity=0.217 Sum_probs=89.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++..+++++++.+|++.|.++++..+||++. .++++|+++..|+..+..... ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-------------~~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~ 61 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-------------EEKLKGVVTFTDILDLDLFES-------FLEKKVFN 61 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-------------CCCEEEEEehHHhHHHHhhcc-------cccCcHHH
Confidence 5678999999999999999999999999986 368999999999997754311 12457888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... ++++.+++++.++++.|. ++..+++|.++ +..+|+||..|+++
T Consensus 62 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~G~it~~di~~ 110 (111)
T cd04626 62 IVSQD----VFYVNEEDTIDEALDIMREKQIGRLPVVDD----------------------NKLIGVVRTKDILD 110 (111)
T ss_pred HhcCC----cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC----------------------CEEEEEEEhHHhcc
Confidence 88543 889999999999999998 78899988753 24678999999863
No 136
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.04 E-value=1.8e-09 Score=92.10 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=91.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC---------Ch
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL---------SP 88 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~---------~~ 88 (397)
+++.++++++++.+|++.|.++++..+||+|. .++++|+++..|++.++....... ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-------------~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD-------------DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGA 68 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-------------CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcch
Confidence 56889999999999999999999999999996 368999999999998664321000 00
Q ss_pred h-------hhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 89 S-------LALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 89 ~-------~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
. .....++.++|... ++.+.+++++.++++.|. .+.++++|.+ . +.
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~---------------------g~ 122 (135)
T cd04586 69 EELAAAFVRSHGRKVADVMTRP----VVTVGEDTPLAEVAELMEEHRIKRVPVVR-G---------------------GR 122 (135)
T ss_pred HHHHHHHHHhcCCCHHHHhCCC----ceEeCCCCcHHHHHHHHHHcCCCccCEec-C---------------------CE
Confidence 0 11235688888543 889999999999999999 7899998875 2 35
Q ss_pred eeeeecHHHHHH
Q 016003 161 EFCWLTQEDIIR 172 (397)
Q Consensus 161 ~~~IITq~DIi~ 172 (397)
.+|+||+.|+++
T Consensus 123 ~~Gvit~~di~~ 134 (135)
T cd04586 123 LVGIVSRADLLR 134 (135)
T ss_pred EEEEEEhHhhhc
Confidence 689999999975
No 137
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.04 E-value=5.7e-09 Score=85.23 Aligned_cols=107 Identities=22% Similarity=0.235 Sum_probs=88.7
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++++++.++.+|++.|.++++..+||.|. .++++|+++..|++..+..+ ..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~~l~~~~~~~----------~~~~~ 58 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-------------DGRLVGIVTSWDISKAVARD----------KKSVE 58 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-------------CCcEEEEEeHHHHHHHHhhC----------ccCHH
Confidence 46788999999999999999999999999986 36899999999999876532 12478
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+++++.++++.|. ++.+.++|...+ +...|+||+.|+++
T Consensus 59 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~G~v~~~di~~ 109 (110)
T cd04605 59 DIMTRN----VITATPDEPIDVAARKMERHNISALPVVDAE---------------------NRVIGIITSEDISK 109 (110)
T ss_pred HhcCCC----CeEECCCCcHHHHHHHHHHhCCCEEeEECCC---------------------CcEEEEEEHHHhhh
Confidence 888543 889999999999999999 678888887532 45789999999864
No 138
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.04 E-value=2.9e-09 Score=86.56 Aligned_cols=109 Identities=18% Similarity=0.302 Sum_probs=87.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||.+. ++++|+++..|+.+.+.+... ....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------~~~~G~v~~~dl~~~~~~~~~------~~~~~~~~ 61 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--------------GRVVGSIDESDLLDALIEGKA------KFSLPVRE 61 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--------------CeeEEEEeHHHHHHHHhcccc------ccCcCHHH
Confidence 5688999999999999999999999999985 479999999999998764211 12467888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.+++++.+++++|.+. +.++|+.++ +...|+||++||++|
T Consensus 62 ~~~~~----~~~v~~~~~l~~~~~~~~~~-~~~~vv~~~---------------------~~~~Gvvt~~di~~~ 110 (110)
T cd04609 62 VMGEP----LPTVDPDAPIEELSELLDRG-NVAVVVDEG---------------------GKFVGIITRADLLKY 110 (110)
T ss_pred HhcCC----CceeCCCCcHHHHHHHHHhC-CceeEEecC---------------------CeEEEEEeHHHhhcC
Confidence 88644 78899999999999988763 345554321 357899999999876
No 139
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.03 E-value=3e-09 Score=86.28 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=81.3
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
+++++.++.++.+|++.|. ++.++++|.+. +++.+|++|..|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---------------------~g~~~Giv~~~dl~~~~~---------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---------------------DGQPLGFVTRREAARASG---------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---------------------CCCEEEEEeHHHHHHhcc----------
Confidence 3678899999999999887 56677776642 246789999999986421
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
.++.+ +|.+.+.++.+++++.+|++.|.++++ +.+||+|++|+++|+||..+|.
T Consensus 51 -~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 51 -GCCGD--HAEPFKVTVSVDDDLRIVLSRMFAHDM--SWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred -cchhh--hcccCCEEECCCCCHHHHHHHHHHCCC--CeeeEECCCCcEEEEEEHHHhh
Confidence 12433 577778889999999999999999999 9999999989999997755543
No 140
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=5.1e-09 Score=85.81 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=88.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
.+.++++++++.+|++.|.+++...+||.+. ++++|+++..|+..++.+... .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~~ 62 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER--------------GELVGLLTFREVLQAMAQHGA-----GVLDTTVRA 62 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--------------CEEEEEEEHHHHHHHHHhcCC-----chhcCCHHH
Confidence 5688999999999999999999888887763 689999999999988764210 112457999
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.+++++.++++.|. ++..+++|.++ ++.+|+||..|++++
T Consensus 63 ~~~~~----~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~----------------------~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 63 IMNPE----PIVASPDDSIDEVRRLMVERHLRYLPVLDG----------------------GTLLGVISFHDVAKA 112 (112)
T ss_pred HhCCC----CeEECCCCCHHHHHHHHHHcCCCeeeEEEC----------------------CEEEEEEEHHHhhcC
Confidence 99543 788999999999999998 78889988742 356899999999863
No 141
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.03 E-value=4e-09 Score=86.05 Aligned_cols=108 Identities=25% Similarity=0.321 Sum_probs=87.0
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
+++.+.++.++.++++.|. ++.+.++|.+. ++.+|+++..|+.++..+... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~G~v~~~~l~~~~~~~~~-----~ 54 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----------------------GRPLGIVTERDILRLLASGPD-----L 54 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----------------------CEEEEEEeHHHHHHHHhcCCC-----C
Confidence 4678999999999999998 56777777542 356889999999988753211 2
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
..++++ +|.++++++.+++++.++++.|.+.+. ..+||+|++|+++|+||.+||.+
T Consensus 55 ~~~v~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGE--VMSSPLLTVPADTSLYDARQLMREHGI--RHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHH--hcCCCceEECCCCCHHHHHHHHHHcCC--eEEEEECCCCcEEEEEEhHHhhc
Confidence 445655 578889999999999999999999888 99999999899999987666543
No 142
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.02 E-value=5.4e-09 Score=86.19 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=86.5
Q ss_pred CeEEEeCChhHHHHHHHHhhCC-CceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 19 ALRALSISAAIADALSALKNSD-ESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~-I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+..+++++.|+.+|++.|.+++ ...+||.+. ++++|+++..|++.++.+... ..+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~------~~~~~i~ 61 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--------------GRLLGIFTERDIVRLTAIGKD------LSDLPIG 61 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--------------CcEEEEEeHHHHHHHHhcCCC------ccccCHH
Confidence 4578899999999999999988 677888773 589999999999987654211 1235788
Q ss_pred hhccCCCCCceEEeCCC--CCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPS--CSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~--~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... ++++.++ +++.++++.|. ++.++++|.+++ +..+|+||+.|+++
T Consensus 62 ~~~~~~----~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~---------------------~~~~Gvit~~dl~~ 114 (115)
T cd04620 62 EVMTQP----VVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ---------------------GQLIGLVTAESIRQ 114 (115)
T ss_pred HhcCCC----cEEEecccccCHHHHHHHHHHhCCceEEEEcCC---------------------CCEEEEEEhHHhhc
Confidence 888543 7778876 78999999999 788999887532 45789999999975
No 143
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.02 E-value=6.2e-09 Score=84.61 Aligned_cols=105 Identities=16% Similarity=0.274 Sum_probs=87.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+...+++++++.+|++.|.++++..+||.|.+ ++++|+++..|++..... ..++.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~-----------~~~v~~ 58 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-------------NKLLGIVSLESLEQAYKE-----------AKSLED 58 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-------------CcEEEEEEHHHHHHHhhc-----------CCcHhH
Confidence 56789999999999999999999999999963 689999999999876422 246788
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... +..+.+++++.++++.|. .+.++++|...+ +..+|+||+.|+++
T Consensus 59 ~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~---------------------g~~~Gvit~~~l~~ 108 (109)
T cd04583 59 IMLED----VFTVQPDASLRDVLGLVLKRGPKYVPVVDED---------------------GKLVGLITRSSLVD 108 (109)
T ss_pred hhcCC----ceEECCCCcHHHHHHHHHHcCCceeeEECCC---------------------CeEEEEEehHHhhc
Confidence 88644 788999999999999998 688888887532 45789999999874
No 144
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.01 E-value=6e-09 Score=86.21 Aligned_cols=116 Identities=24% Similarity=0.230 Sum_probs=90.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC---Chhh-hhcC
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL---SPSL-ALKQ 94 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~---~~~~-~~~~ 94 (397)
++.+++++.++.+|++.|.++++..+||+|. ++++|+++..|++.++....... +... .-+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--------------GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKI 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--------------CeEEEEEeHHHHHHhhhcccccccchhhhhhhccc
Confidence 5678999999999999999999999999995 48999999999998865311000 0000 1135
Q ss_pred ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 95 PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 95 ~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++.++|... +..+.+++++.+++..|. ++.++++|...+ +..+|+||+.|++++
T Consensus 68 ~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvvt~~di~~~ 122 (122)
T cd04585 68 KVSDIMTRD----PITVSPDASVEEAAELMLERKISGLPVVDDQ---------------------GRLVGIITESDLFRA 122 (122)
T ss_pred CHHHhccCC----CeEeCCCCcHHHHHHHHHHcCCCceeEECCC---------------------CcEEEEEEHHHhhhC
Confidence 688888654 889999999999999998 788888887531 467899999999863
No 145
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.01 E-value=6.7e-09 Score=84.93 Aligned_cols=107 Identities=23% Similarity=0.274 Sum_probs=89.6
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++++.+.++.+|++.|.++++..+||.|. ++++|+++..|+...+... ....++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~dl~~~~~~~--------~~~~~~~ 59 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--------------GRVVGIISRRDVEKALRHG--------LGHAPVK 59 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--------------CEEEEEEEHHHHHHHHhcc--------cccCcHH
Confidence 57889999999999999999999999999995 4899999999998765321 1346788
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... ++.+.+++++.++++.|. ++.++++|.+ + +..+|+||+.|+++
T Consensus 60 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---------------------~~~~Gvvt~~di~~ 109 (110)
T cd04595 60 DYMSTD----VVTVPPDTPLSEVQELMVEHDIGRVPVVE-D---------------------GRLVGIVTRTDLLR 109 (110)
T ss_pred HHhcCC----CEEECCCCcHHHHHHHHHHcCCCeeEEEe-C---------------------CEEEEEEEhHHhhc
Confidence 999654 788999999999999999 7888888764 1 35689999999875
No 146
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.01 E-value=4.5e-09 Score=87.36 Aligned_cols=115 Identities=23% Similarity=0.257 Sum_probs=90.8
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC---CChhhh-hcC
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS---LSPSLA-LKQ 94 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l---~~~~~~-~~~ 94 (397)
+++++++++++.+|++.|.++++..+||++. ++++|+++..|+...+...... ...... ...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--------------GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNL 67 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--------------CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhcc
Confidence 4678999999999999999999999999994 5899999999999876531100 000111 245
Q ss_pred ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 95 PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 95 ~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++.++|... ++.+.+++++.++++.|. .+.++++|.++ ++.+|+||..|+++|
T Consensus 68 ~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 68 PVSDIMTRP----VITIEPDTSVSDVASLMLENNIGGLPVVDD----------------------GKLVGIVTRTDILRY 121 (121)
T ss_pred CHHHHccCC----ceEECCCCcHHHHHHHHHHcCCCcccEEEC----------------------CEEEEEEEHHHhhcC
Confidence 788888654 889999999999999998 78888888753 357899999999875
No 147
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.00 E-value=3.5e-09 Score=109.27 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=99.4
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
++|...+++++| .++++++++++|+.+|++.|.++++..+||+|. +++++|+|+..|+++.+.+.
T Consensus 330 ~~l~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-------------~~~~~Givt~~dl~~~~~~~ 394 (454)
T TIGR01137 330 DVLKNATVKDLH--LPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-------------AGKVLGSVTLRELLSALFAG 394 (454)
T ss_pred HHhccCCHHHhC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCeEEEEEEHHHHHHHHhcc
Confidence 357788999999 467899999999999999999999999999996 36899999999999977642
Q ss_pred CCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 83 SNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 83 ~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
.. ..+.++.++|... +.++.+++++.++++.|.+. +.+|+.++ ++.+
T Consensus 395 ~~------~~~~~v~~im~~~----~~~v~~~~~l~~a~~~~~~~--~~~vV~~~---------------------g~li 441 (454)
T TIGR01137 395 KA------NPDDAVSKVMSKK----FIQIGEGEKLSDLSKFLEKN--SSAIVTEE---------------------GKPI 441 (454)
T ss_pred CC------CcCCCHHHhcCCC----CeEECCcCcHHHHHHHHHHC--CeeEEEEC---------------------CEEE
Confidence 11 1235799999644 78999999999999999742 23443321 3578
Q ss_pred eeecHHHHHHHH
Q 016003 163 CWLTQEDIIRFI 174 (397)
Q Consensus 163 ~IITq~DIi~~l 174 (397)
|+||..||+++|
T Consensus 442 Gvvt~~dll~~l 453 (454)
T TIGR01137 442 GVVTKIDLLSFL 453 (454)
T ss_pred EEEEHHHHHHhh
Confidence 999999999886
No 148
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=6.5e-09 Score=86.64 Aligned_cols=116 Identities=15% Similarity=0.204 Sum_probs=91.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh--h--hhhcC
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP--S--LALKQ 94 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~--~--~~~~~ 94 (397)
+++++++++++.+|++.|.++++..+||+|. ++++|+++..|+.+.+.......+. . .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--------------NELVGVISDRDYLKAISPFLGTAGETEKDLATLNR 67 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--------------CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHh
Confidence 5688999999999999999999999999994 4899999999999876531100000 0 12345
Q ss_pred ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 95 PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 95 ~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++.++|... ++.+.+++++.++++.|. ++..+++|.+++ +..+|++|..|+++|
T Consensus 68 ~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~---------------------~~~~Gvit~~dll~~ 122 (122)
T cd04637 68 RAHQIMTRD----PITVSPDTPVDEASKLLLENSISCLPVVDEN---------------------GQLIGIITWKDLLKY 122 (122)
T ss_pred HHHHhhcCC----CeeeCCCCcHHHHHHHHHHcCCCeEeEECCC---------------------CCEEEEEEHHHhhhC
Confidence 788888654 899999999999999998 688888887432 357899999999875
No 149
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.99 E-value=3.2e-09 Score=91.49 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=75.7
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|...++ +++||+|++|+++|++ +..|++.+........
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~--~~~~VvD~~g~l~Giv-------------------t~~Dl~~~~~~~~~~~---- 56 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQ--SCVLVVDSDDFLEGIL-------------------TLGDIQRFLFTNKTTR---- 56 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCC--CEEEEECCCCeEEEEE-------------------EHHHHHHHHhhccccc----
Confidence 57899999999999999999988 9999999999999995 4566554321000000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..... +.+... ... ..++ ... ....+.|..+++++++++++.+|++
T Consensus 57 --------~~~~~--~~~~~~-------------~~~-v~~i---~~~-------~~~~~~~~~~~~~v~~~~~l~ea~~ 102 (133)
T cd04592 57 --------VQPED--ETKQTN-------------TCL-VSSV---CTK-------GISYGGQECGLWTCTPDTDLTTAKK 102 (133)
T ss_pred --------cccch--hhcccc-------------ccc-HHHH---hhh-------hhhhcccCCCCEEECCCCCHHHHHH
Confidence 00000 000000 000 0000 000 0000124578999999999999999
Q ss_pred HHHHcCCcEEEEEcCCC
Q 016003 358 QAIAHRVTYVWVIEDDC 374 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~ 374 (397)
.|.+++++++||+|+++
T Consensus 103 ~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 103 LMEAKGVKQLPVVKRGV 119 (133)
T ss_pred HHHHcCCCcCCEecCCc
Confidence 99999999999999753
No 150
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.98 E-value=6.8e-09 Score=85.09 Aligned_cols=111 Identities=26% Similarity=0.274 Sum_probs=90.5
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++.++++++++.++++.|.+.++..+||.|.+ ++++|+++..|+...+.+.... ...++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~~i~~~~~~~~~~------~~~~v~~ 63 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-------------GRLVGIFTDGDLRRALEKGLDI------LTLPVAD 63 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-------------CCEEEEechHHHHHHHhccCcc------ccCCHHH
Confidence 45678999999999999999999999999963 6899999999999887653211 1247889
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.+++++.++++.|. ++.++++|...+ +..+|+||..||+++
T Consensus 64 ~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------~~~iG~it~~di~~~ 114 (114)
T cd04604 64 VMTRN----PKTIDPDALAAEALELMEENKITALPVVDDN---------------------GRPVGVLHIHDLLRA 114 (114)
T ss_pred hhccC----CeEECCCCcHHHHHHHHHHcCCCEEEEECCC---------------------CCEEEEEEHHHhhcC
Confidence 98654 778999999999999999 778888887532 467899999999763
No 151
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.98 E-value=6.2e-09 Score=86.64 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=90.5
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh---hhhhcC
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP---SLALKQ 94 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~---~~~~~~ 94 (397)
++++++++++++.+|++.|.++++..+||+|. .++++|+++..|++..........+. ......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-------------AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASP 67 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECC-------------CCcEEEEEEcHHHHhhccccccccchhhhhhhccC
Confidence 35789999999999999999999999999986 36899999999998753211000000 001345
Q ss_pred ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 95 PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 95 ~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++.++|... +..+.+++++.++++.|. .+.++++|..++ +..+|+||+.|+++
T Consensus 68 ~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~---------------------g~~~Gvit~~dl~~ 121 (122)
T cd04635 68 TVEKIMSTP----VYSVTPDDSIATAVELMLEHDIGRLPVVNEK---------------------DQLVGIVDRHDVLK 121 (122)
T ss_pred cHHHHhcCC----CeeECCCCCHHHHHHHHHHcCCCeeeEEcCC---------------------CcEEEEEEhHHhhc
Confidence 688888544 899999999999999999 788999887532 35789999999975
No 152
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.97 E-value=1.1e-08 Score=83.40 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=88.9
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
|+++.+++++++.+|++.|.++++..+||.|. ++++|+++..|+........ . ...++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~-~------~~~~~~ 59 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD--------------GRLVGIVTLADIRRVPAEGR-E------ATVLVG 59 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--------------CeEEEEEEHHHHHHHHhcCc-c------cccCHH
Confidence 46788999999999999999999999999995 48999999999987654311 0 014577
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+++++.++++.|. ++.+.++|.++ ++...|+||..||++
T Consensus 60 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---------------------~~~~~G~it~~di~~ 110 (111)
T cd04612 60 DVMTRD----PVTASPDETLRDALKRMAERDIGRLPVVDD---------------------SGRLVGIVSRSDLLR 110 (111)
T ss_pred HhccCC----CeEECCCCCHHHHHHHHHhCCCCeeeEEcC---------------------CCCEEEEEEHHHhhh
Confidence 788654 889999999999999999 68888888753 146789999999976
No 153
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.96 E-value=1.4e-08 Score=83.21 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=88.0
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
|+++++++++++.+|++.|.+++...+||.+. ++++|+++..|++..+..... .....++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~i~~~~l~~~~~~~~~-----~~~~~~~~ 61 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN--------------DRLVGIVTDRDIVVRAVAEGR-----DPDTTTVG 61 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEhHHHHHHHhhccC-----CcccCCHH
Confidence 46789999999999999999999999999995 589999999999743322110 11123488
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +.++.+++++.++++.|. .+.++++|.++. ++.+|+||..|+++
T Consensus 62 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~G~it~~di~~ 112 (113)
T cd04622 62 DVMTRG----VVTVTEDDDVDEAARLMREHQVRRLPVVDDD---------------------GRLVGIVSLGDLAR 112 (113)
T ss_pred HhccCC----ccEECCCCCHHHHHHHHHHcCCCeeeEECCC---------------------CcEEEEEEHHHhhc
Confidence 998654 788999999999999998 788888886431 45789999999975
No 154
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.96 E-value=1.5e-08 Score=82.99 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=89.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++++.+|++.|.+++...+||++. ++++|+++..|++.++..... ...+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~ 61 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--------------EKPVGIITERDLVKKVVSRNL-----KPREVPVG 61 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--------------CEEEEEEEHHHHHHHHhhccC-----CcccCCHH
Confidence 45788999999999999999999999999995 489999999999997754211 11245788
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+++++.++++.|. .+.+.++|++++ +.+|+||..|+++
T Consensus 62 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----------------------~~~Gvi~~~di~~ 111 (112)
T cd04802 62 EVMSTP----LITIDPNASLNEAAKLMAKHGIKRLPVVDDD----------------------ELVGIVTTTDIVM 111 (112)
T ss_pred HhcCCC----cEEECCCCCHHHHHHHHHHcCCCeeEEeeCC----------------------EEEEEEEhhhhhc
Confidence 888644 888999999999999999 788888887531 4678999999874
No 155
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.94 E-value=7.6e-09 Score=107.69 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=98.0
Q ss_pred hhhhhhcCC-CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 9 EVSDLCLGK-PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 9 ~v~dl~~~k-~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
+|.+++.+. ...+++++++|+.+|++.|.++++..+||+|... .+++++|+||..||... .
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~----------~~gkLvGIVT~~DLr~~--~------ 156 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGT----------AHGKLLGIVTSRDYRIS--R------ 156 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC----------cCCEEEEEEEcHHhhcc--c------
Confidence 477777532 2346899999999999999999999999999521 13699999999999532 1
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
...+.+|+++|... .+++++.+++++.+|+++|. ++++++||++++ +.++|+||
T Consensus 157 --~~~~~~V~dIMt~~--~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~---------------------g~LvGIIT 211 (502)
T PRK07107 157 --MSLDTKVKDFMTPF--EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN---------------------GNLVYLVF 211 (502)
T ss_pred --cCCCCCHHHHhCCC--CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CeEEEEEE
Confidence 13457899999642 34889999999999999999 899999998632 35789999
Q ss_pred HHHHHHHH
Q 016003 167 QEDIIRFI 174 (397)
Q Consensus 167 q~DIi~~l 174 (397)
..|+++..
T Consensus 212 ~~Dilk~~ 219 (502)
T PRK07107 212 RKDYDSHK 219 (502)
T ss_pred hHHHHhcc
Confidence 99999864
No 156
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.92 E-value=4.8e-09 Score=88.48 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=86.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHH-----HhhcCCCCChhhhhc
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICY-----LCKDSNSLSPSLALK 93 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~-----l~~~~~l~~~~~~~~ 93 (397)
+.++++.++++.+|++.|.++++..+||.|. +++++|+++..|+... +.+.. ....+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-------------~~~~~Giv~~~dl~~~~~~~~~~~~~-----~~~~~ 63 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-------------DDNFIGVITAVDLLGEEPIKRIQEGG-----ISRSE 63 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-------------CCcEEEEEEHHHHhhChhhHHHHHcC-----CCchh
Confidence 4678999999999999999999999999996 3689999999999862 22210 01234
Q ss_pred CChhhhccCCCCCceEEe----CCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHH
Q 016003 94 QPVSVLLPQLLPPLVMHV----EPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQE 168 (397)
Q Consensus 94 ~~V~~lm~~~~~~~~~~V----~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~ 168 (397)
.+++++|... ...+.+ .+++++.++++.|. ++.++++|++.+ ++.++|+||++
T Consensus 64 ~~v~~im~~~--~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~--------------------~~~~~G~it~~ 121 (126)
T cd04640 64 LTVADVMTPK--EDLKALDLEELENASVGDVVETLKASGRQHALVVDRE--------------------HHQIRGIISTS 121 (126)
T ss_pred eEHHHhcCch--hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC--------------------CCEEEEEEeHH
Confidence 6789999543 111233 36899999999999 789999987632 13578999999
Q ss_pred HHHH
Q 016003 169 DIIR 172 (397)
Q Consensus 169 DIi~ 172 (397)
||++
T Consensus 122 di~~ 125 (126)
T cd04640 122 DIAR 125 (126)
T ss_pred HHhh
Confidence 9975
No 157
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.92 E-value=1.7e-08 Score=82.51 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=87.2
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++.++++++++.+|++.|.+++...+||+|. .++++|+++..|++... .+.++++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~~l~~~~------------~~~~v~~ 57 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-------------KNKVVGIVTSKDVAGKD------------PDTTIEK 57 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-------------CCeEEEEecHHHHhccc------------ccccHHH
Confidence 5788999999999999999999999999996 36899999999997421 1357889
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... +..+.+++++.++++.|. .+.+.++|...+ ++.+|+||..|+++
T Consensus 58 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~G~it~~di~~ 107 (108)
T cd04596 58 VMTKN----PITVNPKTSVASVAHMMIWEGIEMLPVVDDN---------------------KKLLGIISRQDVLK 107 (108)
T ss_pred HhcCC----CeEECCCCCHHHHHHHHHHcCCCeeeEEcCC---------------------CCEEEEEEHHHhhc
Confidence 98644 789999999999999998 788888887522 46789999999875
No 158
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.91 E-value=2e-08 Score=82.92 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=84.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||+|.... +++++|+++..|++... . .+.++++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~----------~~~~~G~v~~~dl~~~~-~----------~~~~v~~ 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKS----------GGKLLGIVTSRDIDFLT-D----------SETPLSE 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCc----------CCEEEEEEEhHHhhhhh-c----------cCCCHHH
Confidence 4678899999999999999999999999995210 26899999999987421 1 1356889
Q ss_pred hccCCCCCceEEe--CCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHV--EPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V--~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... ..++ .+++++.++++.|. ++.++++|++++ +..+|+||+.|+++
T Consensus 62 ~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~---------------------~~~~Gvit~~di~~ 113 (114)
T cd04602 62 VMTPR----EVLVVAPTGITLEEANEILRESKKGKLPIVNDD---------------------GELVALVTRSDLKK 113 (114)
T ss_pred hcCCC----ceEEECCCCCCHHHHHHHHHhcCCCceeEECCC---------------------CeEEEEEEHHHhhc
Confidence 98543 4455 45999999999998 789999987532 35789999999875
No 159
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.91 E-value=2e-08 Score=81.17 Aligned_cols=101 Identities=20% Similarity=0.149 Sum_probs=84.8
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||+|. ++++|+++..|+.... .+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~Giv~~~~l~~~~------------~~~~~~~ 55 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--------------GKLVGIITSRDVRRAH------------PNRLVAD 55 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------CEEEEEEehHHhhccc------------ccCCHHH
Confidence 5678999999999999999999999999983 5899999999998631 1246788
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDII 171 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi 171 (397)
+|... ++.+.+++++.++++.|. ++..+++|.++ +..+|+||+.|++
T Consensus 56 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~G~it~~~l~ 103 (105)
T cd04599 56 AMTRE----VVTISPEASLLEAKRLMEEKKIERLPVLRE----------------------RKLVGIITKGTIA 103 (105)
T ss_pred HccCC----CEEECCCCCHHHHHHHHHHcCCCEeeEEEC----------------------CEEEEEEEHHHhc
Confidence 88544 889999999999999998 78888888753 3568899999986
No 160
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.90 E-value=1.3e-08 Score=82.79 Aligned_cols=106 Identities=25% Similarity=0.225 Sum_probs=84.8
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++.++++.++++.++++.|.+++..++||.|. +++++|+++..|+.... ..+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~~l~~~~-----------~~~~~v~ 57 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDD-------------DGKLVGIVTNRDLRFET-----------DLDKPVS 57 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-------------CCEEEEEEEhhHeeecc-----------cCCCCHH
Confidence 35688999999999999999999999999996 36899999999986321 1245788
Q ss_pred hhccCCCCCceEEeCC-CCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEP-SCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~-~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+ ++++.++++.|. .+.++++|..++ +..+|+||..|+++
T Consensus 58 ~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvi~~~dil~ 109 (110)
T cd04601 58 EVMTPE----NLLTTVEGTSLEEALELLHEHKIEKLPVVDDE---------------------GKLKGLITVKDIEK 109 (110)
T ss_pred HhcccC----ceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC---------------------CCEEEEEEhhhhhc
Confidence 888543 455566 999999999999 688888887532 35789999999975
No 161
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.90 E-value=1.7e-08 Score=105.21 Aligned_cols=114 Identities=15% Similarity=0.040 Sum_probs=94.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++|+.+|+++|.++++..+||+|... ..++++|+|+..|+... . ..+.+|+
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~----------~~GklvGIVT~~DL~~v-~----------~~~~~V~ 166 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGT----------MGSKLLGYVTKRDWDFV-N----------DRETKLS 166 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC----------cCCeEEEEEEHHHHhhc-c----------ccCCcHH
Confidence 5789999999999999999999999999998521 13689999999999532 1 1257899
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFIL 175 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~ 175 (397)
++|... .+++++.+++++.+|++.|. ++.++++|++++ +.++|+||+.||++++.
T Consensus 167 eIMt~~--~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~---------------------g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 167 EVMTSD--DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED---------------------GELVDLVTRTDVKRVKG 222 (505)
T ss_pred HHhccC--CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------CeEEEEEEHHHHHHHhh
Confidence 999532 33789999999999999999 789999998632 35789999999999985
No 162
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.89 E-value=3.5e-08 Score=79.46 Aligned_cols=111 Identities=29% Similarity=0.307 Sum_probs=88.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.++++.|.+++...+||++.+ ++++|+++..|++.++....... ...+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~ 62 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-------------GRLVGIVTERDLLRALAEGGLDP------LVTVGD 62 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-------------CCEEEEEeHHHHHHHHHhccCCc------cccHHH
Confidence 46789999999999999999999999999963 68999999999999886521110 112566
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... ++.+.++.++.+++..|. .+.+.++|.+.+ ++..|+||+.|++++
T Consensus 63 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~G~i~~~dl~~~ 113 (113)
T cd02205 63 VMTRD----VVTVSPDTSLEEAAELMLEHGIRRLPVVDDE---------------------GRLVGIVTRSDILRA 113 (113)
T ss_pred HhcCC----ceecCCCcCHHHHHHHHHHcCCCEEEEEcCC---------------------CcEEEEEEHHHhhcC
Confidence 77543 788999999999999998 678888887532 467889999999763
No 163
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.87 E-value=3.7e-08 Score=81.66 Aligned_cols=115 Identities=27% Similarity=0.269 Sum_probs=89.0
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh---hhhhcCC
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP---SLALKQP 95 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~---~~~~~~~ 95 (397)
++.++++++++.+|++.|.+++...+||+|.+ ++++|+++..|++............ ......+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-------------GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMP 68 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-------------CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcC
Confidence 57889999999999999999999999999963 6899999999998765421100000 0122457
Q ss_pred hhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 96 VSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 96 V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+.++|... ++.+.+++++.++++.|. .+.+.++|.++ +..+|++|..||++
T Consensus 69 v~~~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~----------------------~~~~Gvv~~~di~~ 120 (121)
T cd04584 69 VKEIMTKD----VITVHPLDTVEEAALLMREHRIGCLPVVED----------------------GRLVGIITETDLLR 120 (121)
T ss_pred HHHHhhCC----CeEECCCCcHHHHHHHHHHcCCCeEEEeeC----------------------CEEEEEEEHHHhhc
Confidence 88888654 789999999999999998 67778877642 35688999999874
No 164
>PRK11573 hypothetical protein; Provisional
Probab=98.87 E-value=8.3e-08 Score=98.03 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=119.1
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
-|..++|+|+|....++++++.++++.++++.+.+++.+.+||++.+ .++++|++...|++.++.+..
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~------------~D~IiGiv~~kDll~~~~~~~ 250 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS------------LDDAISMLRVREAYRLMTEKK 250 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC------------CCceEEEEEHHHHHHHhhccC
Confidence 46788999999988899999999999999999999999999999853 468999999999998654321
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
.. -...+..++ .+++.|.++.++.++++.|.++-.++.++.+. -|...|
T Consensus 251 ~~------~~~~l~~~~-----r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE--------------------yG~~~G 299 (413)
T PRK11573 251 EF------TKENMLRAA-----DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE--------------------YGDIQG 299 (413)
T ss_pred cC------CHHHHHhhc-----cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec--------------------CCCeEE
Confidence 10 011233444 24788999999999999999544445443332 145678
Q ss_pred eecHHHHHHHHHhcc-CCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHH
Q 016003 164 WLTQEDIIRFILSSI-SLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAI 215 (397)
Q Consensus 164 IITq~DIi~~l~~~~-~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m 215 (397)
+||.+||+.-+.... ++..+-....+.. ...+.+.+....++.|.-+.+
T Consensus 300 iVTleDilEeivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 300 LVTVEDILEEIVGDFTTSMSPTLAEEVTP---QNDGSVIIDGTANVREINKAF 349 (413)
T ss_pred EeeHHHHHHHHhCCCCcccCcccccceEE---ecCCEEEEEeeeEHHHHHHHh
Confidence 999999999886432 1221111111221 124578899999999888876
No 165
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.86 E-value=2.1e-08 Score=96.06 Aligned_cols=103 Identities=24% Similarity=0.173 Sum_probs=87.4
Q ss_pred chhhhhhcCCCC-eEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 8 DEVSDLCLGKPA-LRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 8 ~~v~dl~~~k~~-li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
.+|+|+|. ++ ...+++++++.+|++.|.++++..+||+|.+ ++++|+++..|+...+..+
T Consensus 155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-------------g~~~Givt~~dl~~~~~~~---- 215 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-------------NQLVGVFTDGDLRRALLGG---- 215 (268)
T ss_pred hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-------------CCEEEEEEcHHHHHHHhcC----
Confidence 57999994 44 8899999999999999999999999999963 6899999999999876431
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEecc
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIK 136 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~ 136 (397)
...+.+++++|... +.++.+++++.+|++.|. .+.++++|.++
T Consensus 216 ---~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 259 (268)
T TIGR00393 216 ---GSLKSEVRDFMTLG----PKTFKLDALLLEALEFLERRKITSLVVVDD 259 (268)
T ss_pred ---CcccCcHHHhCCCC----CeEECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence 12357899999654 889999999999999999 78999999753
No 166
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.85 E-value=2.7e-08 Score=85.71 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=80.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChh--h---hhc
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPS--L---ALK 93 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~--~---~~~ 93 (397)
.++++++++++.+|++.|.++++.++||+|. +++++|+++..|++.++.......... . .-.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-------------~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-------------DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT 68 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-------------CCeEEEEEEHHHHHHHHhhccccccccchhhccccc
Confidence 5789999999999999999999999999996 368999999999999886432111000 0 011
Q ss_pred CChhhhccCC-----CCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCc
Q 016003 94 QPVSVLLPQL-----LPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNR 138 (397)
Q Consensus 94 ~~V~~lm~~~-----~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~ 138 (397)
..+.++|... ...+++++.+++++.+|++.|. +++++++|.+++.
T Consensus 69 ~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 69 CLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred ccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 2345555311 1234889999999999999999 7999999987543
No 167
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.85 E-value=4.2e-08 Score=79.54 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=86.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++++.+.++.+|++.|.+++...+||.+. ++++|+++..|++.. . ...+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--------------~~~~g~v~~~~l~~~---~---------~~~~~~ 55 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--------------GKVVGIVSARDLLGK---D---------PDETVE 55 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--------------CEEEEEEEHHHhhcc---C---------ccccHH
Confidence 46788999999999999999999999999984 489999999999852 1 124688
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++|... ++.+.+++++.++++.|. ++.++++|..++ +..+|+|+..|++++
T Consensus 56 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------g~~~Gvi~~~di~~~ 107 (107)
T cd04610 56 EIMSKD----LVVAVPEMDIMDAARVMFRTGISKLPVVDEN---------------------NNLVGIITNTDVIRS 107 (107)
T ss_pred HhCCCC----CeEECCCCCHHHHHHHHHHhCCCeEeEECCC---------------------CeEEEEEEHHHhhcC
Confidence 888544 788999999999999998 677888887532 457899999999863
No 168
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.84 E-value=9.3e-09 Score=74.74 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=51.4
Q ss_pred hhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHh
Q 016003 10 VSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLC 80 (397)
Q Consensus 10 v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~ 80 (397)
|+|+|. ++++++++++++.+|++.|.++++..+||+|.+ ++++|+++..||+.++.
T Consensus 1 v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMT--PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-------------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSB--SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-------------SBEEEEEEHHHHHHHHH
T ss_pred CeECCc--CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-------------CEEEEEEEHHHHHhhhh
Confidence 578884 589999999999999999999999999999963 68999999999999875
No 169
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.83 E-value=2.7e-08 Score=81.35 Aligned_cols=101 Identities=24% Similarity=0.252 Sum_probs=82.1
Q ss_pred EeCChhHHHHHHHHhhCC-----CceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 23 LSISAAIADALSALKNSD-----ESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 23 v~~~~tv~~Al~~L~~~~-----I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++|+.+|++.|.+++ +..+||+|.+ ++++|+++..|++.. . .+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------~~~~G~v~~~~l~~~---~---------~~~~v~ 56 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-------------GRLLGVVSLRDLLLA---D---------PDTPVS 56 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-------------CCEEEEEEHHHHhcC---C---------CcchHH
Confidence 578899999999999887 5789999863 689999999999741 1 135688
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++|... ++.+.+++++.++++.|. ++.+.++|.+++ ++..|+||..|+++.
T Consensus 57 ~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvit~~dll~~ 108 (109)
T cd04606 57 DIMDTD----VISVSADDDQEEVARLFEKYDLLALPVVDEE---------------------GRLVGIITVDDVIDV 108 (109)
T ss_pred HHhCCC----CeEEcCCCCHHHHHHHHHHcCCceeeeECCC---------------------CcEEEEEEhHHhhhh
Confidence 888544 889999999999999999 788888877532 457899999999875
No 170
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.82 E-value=2.8e-08 Score=102.62 Aligned_cols=112 Identities=23% Similarity=0.226 Sum_probs=92.8
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++|+.+|++.|.+++++.+||+|.+.. .++++|+|+.+|++... ..+.+++
T Consensus 88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~----------~~~lvGIVt~rDL~~~~-----------~~~~~V~ 146 (450)
T TIGR01302 88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDM----------TGKLVGIITKRDIRFVK-----------DKGKPVS 146 (450)
T ss_pred cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC----------CCeEEEEEEHHHHhhhh-----------cCCCCHH
Confidence 57899999999999999999999999999996310 15899999999997421 1246799
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
++|.. .+++++.+++++.++++.|. ++.+.++|+++. +...|+||..||++.+
T Consensus 147 dvm~~---~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~---------------------G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 147 EVMTR---EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN---------------------GELVGLITMKDIVKRR 200 (450)
T ss_pred HhhCC---CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC---------------------CcEEEEEEhHHhhhcc
Confidence 99962 24899999999999999999 789999988632 4678999999999886
No 171
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.82 E-value=5.6e-08 Score=84.13 Aligned_cols=115 Identities=26% Similarity=0.264 Sum_probs=88.9
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC---CCCC-------
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS---NSLS------- 87 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~---~l~~------- 87 (397)
++++++++++++.+|++.|.++++.++||+|. ++++|+++..|++.++.... ....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG--------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELI 66 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC--------------CeEEEEecHHHHHHHHHhccCccccccCCcceee
Confidence 35789999999999999999999999999995 48999999999998875321 0000
Q ss_pred ----------------hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccc
Q 016003 88 ----------------PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLS 150 (397)
Q Consensus 88 ----------------~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~ 150 (397)
.......++.++|... +..+.+++++.+++..|. .+.++++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-------------- 128 (143)
T cd04634 67 ELPLREFINWEETKRALTDAGKMKVRDIMTKK----VITISPDASIEDAAELMVRHKIKRLPVVED-------------- 128 (143)
T ss_pred eccchheeehHHHHHHHHHHhcCCHHHHcCCC----CeEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------
Confidence 0001245677777544 889999999999999998 67888888753
Q ss_pred cccccCCCCceeeeecHHHHHH
Q 016003 151 SSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 151 ~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+..+|+||+.|+++
T Consensus 129 --------~~~~Gvvt~~dl~~ 142 (143)
T cd04634 129 --------GRLVGIVTRGDIIE 142 (143)
T ss_pred --------CEEEEEEEHHHhhc
Confidence 24678999999874
No 172
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.82 E-value=5.2e-08 Score=79.19 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=82.0
Q ss_pred EEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhhhc
Q 016003 21 RALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLL 100 (397)
Q Consensus 21 i~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~lm 100 (397)
+++++++++.+|++.|.++++..+||+|. ++++|+++..|+.... ..++.++|
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~-------------~~~~~~~~ 56 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--------------NKFLGAVYLKDIENAT-------------YGDVVDYI 56 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--------------CEEEEEEEHHHHhhhc-------------ccchhhhh
Confidence 67899999999999999999999999994 4899999999998531 12466777
Q ss_pred cCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 101 PQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 101 ~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
... .+++.++.++.++++.|. ++..+++|+++ +..+|+||+.|+++
T Consensus 57 ~~~----~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----------------------~~~iGvit~~dl~~ 103 (104)
T cd04594 57 VRG----IPYVRLTSTAEEAWEVMMKNKTRWCPVVDD----------------------GKFKGIVTLDSILD 103 (104)
T ss_pred hcC----CcEEcCCCCHHHHHHHHHHcCcceEEEEEC----------------------CEEEEEEEHHHhhc
Confidence 543 788999999999999998 78888888742 35689999999874
No 173
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.81 E-value=9.6e-08 Score=99.55 Aligned_cols=113 Identities=19% Similarity=0.133 Sum_probs=92.5
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++.+++++++|+.+|+++|.++++..+||+|.+. +.++++|+|+..|+... . ..+.+|+
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~----------~~gkLvGIVt~~DL~~~--~---------~~~~~V~ 162 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGK----------VGGKLLGIVTSRDIDFV--K---------DKSTPVS 162 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc----------cCCeEEEEEEHHHHhhc--c---------cCCCCHH
Confidence 4568999999999999999999999999999631 13689999999999721 1 1256899
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
++|.. ..+++++.+++++.+|+++|. ++.+.++|++++ +.++|+||..||++..
T Consensus 163 diMt~--~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~---------------------g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 163 EVMTP--REKLVVGNTPISLEEANEVLRESRKGKLPIVNDN---------------------GELVALVSRSDLKKNR 217 (495)
T ss_pred HhhCC--cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC---------------------CcEEEEEEehHhhhcc
Confidence 99964 124899999999999999999 789999998632 3578999999999775
No 174
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.80 E-value=5.8e-08 Score=79.54 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=81.8
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
....+.++.++.++.+.|. .+..+++|.+... .+++..|+|+..|+.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~------------------~~~~~~G~v~~~dl~~~~~~--------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE------------------ESPRLVGYILRSQLVVALKN--------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCC------------------CCCEEEEEEeHHHHHHHHHH---------
Confidence 4678899999999999888 4567777764310 02467899999999887642
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
+|.+++.++.+++++.++++.|.+++. ..+||++ +|+++|+||..||.+
T Consensus 56 --------~m~~~~~~v~~~~~l~~~~~~~~~~~~--~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 --------YIDPSPFTVSPRTSLEKVHQLFRKLGL--RHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred --------hccCCCceECCCCcHHHHHHHHHHcCC--CEEEEEE-CCeEEEEEEhhhhhc
Confidence 577788999999999999999999999 9999995 689999988776654
No 175
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.78 E-value=7.3e-08 Score=98.67 Aligned_cols=125 Identities=22% Similarity=0.305 Sum_probs=100.2
Q ss_pred CCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCC---CCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcCh
Q 016003 183 PIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFD---QTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSA 259 (397)
Q Consensus 183 ~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~---~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~ 259 (397)
+.+..+++. +|+.+.+++.++.++.+|+..+++.+-+ ...+-|||++++++|.+| -
T Consensus 128 ~y~e~taG~--~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvs-------------------l 186 (451)
T COG2239 128 SYPEDTAGR--IMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVS-------------------L 186 (451)
T ss_pred CCChhhhhc--cceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEee-------------------H
Confidence 344555554 7999999999999999999999854332 389999999999999954 4
Q ss_pred hhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhc
Q 016003 260 GDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVR 339 (397)
Q Consensus 260 ~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (397)
++++. . +++ +. ...+|
T Consensus 187 ~~Ll~---a--~~~-------------------------------------------~~----------------i~~im 202 (451)
T COG2239 187 RDLLT---A--EPD-------------------------------------------EL----------------LKDLM 202 (451)
T ss_pred HHHhc---C--CcH-------------------------------------------hH----------------HHHHh
Confidence 44442 0 000 00 11356
Q ss_pred CCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 340 RAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 340 ~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
.+.++++.++++..++++.+-+|+.-.+||||++++++|+||..||+..+.++
T Consensus 203 ~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 203 EDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999776
No 176
>PRK11573 hypothetical protein; Provisional
Probab=98.74 E-value=1.3e-07 Score=96.68 Aligned_cols=128 Identities=13% Similarity=0.193 Sum_probs=99.7
Q ss_pred CccCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 184 IPALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 184 l~~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
+.++++.+ +|+ .++++++.++++.++++++.+++. |.+||.+++ +.++|+ +..+
T Consensus 184 l~~~~v~e--iMtPr~~i~~l~~~~~~~e~~~~~~~~~~--SR~PVy~~~~D~IiGi-------------------v~~k 240 (413)
T PRK11573 184 LEKVTVDD--IMVPRNEIVGIDINDDWKSILRQLTHSPH--GRIVLYRDSLDDAISM-------------------LRVR 240 (413)
T ss_pred cCCCChhh--cCCccceEEEEECCCCHHHHHHHHHhCCC--ceEEEEcCCCCceEEE-------------------EEHH
Confidence 34566666 787 479999999999999999999999 999999764 589999 5567
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|+..+...+. ... . .. + . ...
T Consensus 241 Dll~~~~~~~----------------~~~-~-------------------------~~--------l--------~-~~~ 261 (413)
T PRK11573 241 EAYRLMTEKK----------------EFT-K-------------------------EN--------M--------L-RAA 261 (413)
T ss_pred HHHHHhhccC----------------cCC-H-------------------------HH--------H--------H-hhc
Confidence 7664221000 000 0 00 0 0 013
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+++..+..+.++.++++.|.+++.|-.-|+|+-|..+|+||+.||+..++..+
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999999999999998654
No 177
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.70 E-value=2.7e-07 Score=76.35 Aligned_cols=112 Identities=24% Similarity=0.251 Sum_probs=85.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCC-CceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 19 ALRALSISAAIADALSALKNSD-ESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~-I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++.++++++++.+|++.|.+++ +..+||+|. ++++|+++..|++..+.... ......+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------~~~~G~v~~~~l~~~~~~~~---~~~~~~~~~v~ 64 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--------------GRPVGLIMREALMELLSTPY---GRALYGKKPVS 64 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--------------CeeEEEEEHHHHHHHHhchh---hHHHHcCCcHH
Confidence 4667899999999999999887 999999995 37999999999997665311 01112346799
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceE---EEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNL---VVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+++++.+++..|. ++.+++ +|+++ .+..+|+||..|+++
T Consensus 65 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---------------------~~~~~Gvvs~~di~~ 118 (119)
T cd04598 65 EVMDPD----PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---------------------EGRYLGIGTVKDLLR 118 (119)
T ss_pred HhcCCC----cEEecCCCCHHHHHHHHHcCCcccccccEEEee---------------------CCeEEEEEEHHHHhc
Confidence 999654 889999999999999998 554332 34432 246789999999874
No 178
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.65 E-value=7e-07 Score=91.74 Aligned_cols=163 Identities=21% Similarity=0.206 Sum_probs=117.2
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
-|.+.+|+++|....+++.++.+.+++++.+.+.+++.+.+||++.. .+.++|++...|++.++..+.
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~------------~D~iiGiv~~Kdll~~~~~~~ 269 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD------------LDNIIGIVHVKDLLRALLDGQ 269 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC------------CCcEEEEEEHHHHHHHHhcCc
Confidence 46788999999988899999999999999999999999999999932 478999999999999987642
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhc-CCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLG-GAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~-g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
.. ... ...+ .+++.|.+..++.++++.|.+ +.|=..|.++- |...
T Consensus 270 ~~----~~~----~~~~-----~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy---------------------G~~~ 315 (429)
T COG1253 270 SD----LDL----RVLV-----RPPLFVPETLSLSDLLEEFREERTHMAIVVDEY---------------------GGVE 315 (429)
T ss_pred cc----cch----hhcc-----cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC---------------------CCeE
Confidence 10 011 1112 158999999999999999994 44444444321 4577
Q ss_pred eeecHHHHHHHHHhccC-CCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHH
Q 016003 163 CWLTQEDIIRFILSSIS-LFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAI 215 (397)
Q Consensus 163 ~IITq~DIi~~l~~~~~-~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m 215 (397)
|+||.+||+.-+..... +...--...+ ....... +.+...+++.+.-+.+
T Consensus 316 GlVTleDIiEeIvGei~de~d~~~~~~~--~~~~~~~-~~v~G~~~l~e~~~~l 366 (429)
T COG1253 316 GLVTLEDIIEEIVGEIPDEHDEDEEEDI--IQRDDDG-WLVDGRVPLEELEELL 366 (429)
T ss_pred EEeEHHHHHHHHhCCCcCcccccccccc--eEecCCc-EEEeccccHHHHHHHh
Confidence 89999999999874321 1111000111 1122345 7888999998776655
No 179
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.62 E-value=6e-07 Score=90.18 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=88.9
Q ss_pred CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 195 ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 195 ~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
+........++.+..++++.|...+. ..+.|+|+++++.|. ++..++..+....+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-------------------~~~~~~~~~~~~~~---- 302 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERV--DSLYVVDRQNKLVGV-------------------VDVESIKQARKKAQ---- 302 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCC--ceEEEEcCCCCEEEE-------------------EeHHHHHHHhhcCC----
Confidence 33445567788899999999999988 999999999999998 44555544321100
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMA 354 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~ 354 (397)
.+ .+.+.....+++++++|.+
T Consensus 303 ---------------------------------------------------~~--------~~~~~~~~~~~~~~~~~~~ 323 (363)
T TIGR01186 303 ---------------------------------------------------GL--------QDVLIDDIYTVDAGTLLRE 323 (363)
T ss_pred ---------------------------------------------------ch--------hhhhccCCceECCCCcHHH
Confidence 00 0113446678999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
++..|.+++.. +||||++|+++|+||+.++++++...
T Consensus 324 ~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 324 TVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred HHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 99999999999 99999999999999999999999764
No 180
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.58 E-value=8e-07 Score=72.10 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=83.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++.+++++.+|+..|.++++..+||++.+ ++++|+++..|++... . +.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~g~v~~~~l~~~~---~---------~~~~~~ 56 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-------------GELVGIITRKDLLRNP---E---------EEQLAL 56 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-------------CcEEEEEEHHHHHhcc---c---------cchHHH
Confidence 57889999999999999999999999999963 6899999999997421 0 134677
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... +.++.+++++.++++.|. ++.+.++|.+. +..+|+||..|+++
T Consensus 57 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----------------------~~~~G~it~~d~~~ 105 (106)
T cd04638 57 LMTRD----PPTVSPDDDVKEAAKLMVENNIRRVPVVDD----------------------GKLVGIVTVADIVR 105 (106)
T ss_pred HhcCC----CceECCCCCHHHHHHHHHHcCCCEEEEEEC----------------------CEEEEEEEHHHhhc
Confidence 77543 788999999999999998 78888888752 24678999999864
No 181
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.55 E-value=5.6e-07 Score=87.56 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=103.1
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP 88 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~ 88 (397)
+|.|+|..-...-.+..++++++=.++--+.|.+.-||+|. ..+++|+|+++|++..
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-------------~~kvvGvVt~rDv~~~---------- 245 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-------------SMKVVGVVTMRDVLDK---------- 245 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-------------cceEEEEEEehhhhcC----------
Confidence 57888875566788999999999999999999999999996 3689999999999832
Q ss_pred hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecH
Q 016003 89 SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQ 167 (397)
Q Consensus 89 ~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq 167 (397)
..++++..+|.++ +.++.+.+|+..+.+.|. .|+.=+||++++ .+.+||||+
T Consensus 246 --~~~t~ieKVMtkn----p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n---------------------~~llGiitR 298 (432)
T COG4109 246 --KPSTTIEKVMTKN----PITVRAKTSVASVAQMMIWEGIEMLPVVDSN---------------------NTLLGIITR 298 (432)
T ss_pred --CCCccHHHHhccC----CeeecccchHHHHHHHHHhccceeeeEEcCC---------------------ceEEEEEEH
Confidence 3357899999988 899999999999999999 899999998754 357899999
Q ss_pred HHHHHHHHhc
Q 016003 168 EDIIRFILSS 177 (397)
Q Consensus 168 ~DIi~~l~~~ 177 (397)
.|+++.+...
T Consensus 299 ~dvlk~lq~~ 308 (432)
T COG4109 299 QDVLKSLQMI 308 (432)
T ss_pred HHHHHHHHHh
Confidence 9999998653
No 182
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.45 E-value=1.9e-06 Score=88.52 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=99.4
Q ss_pred CccCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEc-CCCcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 184 IPALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVD-SDGFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 184 l~~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd-~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
+.++++.+ +|+ .+++.+..+.++.++.+.+.+++. |.+||.+ +.+.++|+ +..+
T Consensus 203 l~~~~v~e--iMtPR~~i~~l~~~~~~~~~~~~~~~~~~--SR~PV~~~~~D~iiGi-------------------v~~K 259 (429)
T COG1253 203 LDDRTVRE--IMTPRTDIVALDLTDTVEELIELILESGH--SRIPVYDGDLDNIIGI-------------------VHVK 259 (429)
T ss_pred cCCcEeee--EeeecccEEEEcCCCCHHHHHHHHHhCCC--CeeeEEcCCCCcEEEE-------------------EEHH
Confidence 34566666 787 479999999999999999999999 9999999 34599999 5577
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|++...... . . .+ ... ..-
T Consensus 260 dll~~~~~~--------------------------~---~-~~--------------------~~~-----------~~~ 278 (429)
T COG1253 260 DLLRALLDG--------------------------Q---S-DL--------------------DLR-----------VLV 278 (429)
T ss_pred HHHHHHhcC--------------------------c---c-cc--------------------chh-----------hcc
Confidence 777632110 0 0 00 000 012
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
.+++.+.+..++.+++++|.+++.|---|+|+-|...|+||+.||+..++..+
T Consensus 279 ~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei 331 (429)
T COG1253 279 RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEI 331 (429)
T ss_pred cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCC
Confidence 28899999999999999999999999999999999999999999999998753
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.8e-06 Score=87.85 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=83.3
Q ss_pred EEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHH
Q 016003 201 AVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVK 280 (397)
Q Consensus 201 tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~ 280 (397)
...++.+..+|++.|...+. ..+.|+|++|+++|.| +..++.......
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~-------------------~~~~~~~~~~~~----------- 336 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDR--EYGYVIERGNKFVGAV-------------------SIDSLKTALTQQ----------- 336 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCC--ceEEEEcCCCcEEEEE-------------------eHHHHHhhhhcC-----------
Confidence 34577789999999999999 9999999999999984 455544311100
Q ss_pred HHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHHHH
Q 016003 281 ERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAI 360 (397)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~ 360 (397)
. .+ ...+.....++.++++|.+++..|.
T Consensus 337 --------~------------------------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (400)
T PRK10070 337 --------Q------------------------------------GL--------DAALIDAPLAVDAQTPLSELLSHVG 364 (400)
T ss_pred --------C------------------------------------ch--------hhhhccCCceeCCCCCHHHHHHHHH
Confidence 0 00 0012345679999999999999999
Q ss_pred HcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 361 AHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 361 ~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
++... +||||++|+++|+||+.++++++...
T Consensus 365 ~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 365 QAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred hCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 97766 99999999999999999999999753
No 184
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.29 E-value=2.4e-06 Score=58.04 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=44.3
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+++++.+++++.+++..|.+++++++||++++++++|+++..|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 357899999999999999999999999999988999999999998765
No 185
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.28 E-value=1.2e-06 Score=86.83 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=86.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
+.+.+.|+.++.++++.-..+++ +++||.++ .+||+|+|| .+|+-..-+.
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF--~g~pvTe~g~~~~KLvG~vt-------------------srdi~f~~~~------ 169 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGF--SGIPVTEDGKRGSKLVGIIT-------------------SRDIQFLEDN------ 169 (503)
T ss_pred CCcccCCcccchhhhhhcccccc--cccccccCCcccceeEEEEe-------------------hhhhhhhhcc------
Confidence 46678999999999999999999 99999975 349999966 4443211000
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMA 354 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~ 354 (397)
.. . ..++|+...++...+.+|.+
T Consensus 170 --------------------------~~-----------------------~--------~~~vmt~~~~~~~~gi~l~~ 192 (503)
T KOG2550|consen 170 --------------------------SL-----------------------L--------VSDVMTKNPVTGAQGITLKE 192 (503)
T ss_pred --------------------------cc-----------------------h--------hhhhcccccccccccccHHH
Confidence 00 0 11357777799999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+=+.+.+++-.++||||++|.||-||+++|+.|.
T Consensus 193 ~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 193 ANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred HHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 9999999999999999999999999999999875
No 186
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.26 E-value=9.9e-06 Score=79.74 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=102.3
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
|...+|+|+|....++..++.+++.++.++.+...-...+|||..+ -++.+|++..+|+++++.+.++
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~------------~DnIiGvlh~r~llr~l~e~~~ 264 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD------------LDNIIGVLHVRDLLRLLNEKNE 264 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC------------hhHhhhhhhHHHHHHHhhccCc
Confidence 5678999999988899999999999999999999999999999864 3579999999999999997543
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
.. +..+..+.. ++|.|+.+++|.+-+.-|.++-+|+-++.+. =|.+.|+
T Consensus 265 ~~------k~d~~~~a~-----epyFVPe~Tpl~~QL~~F~~~k~hialVVDE--------------------YG~i~GL 313 (423)
T COG4536 265 FT------KEDILRAAD-----EPYFVPEGTPLSDQLVAFQRNKKHIALVVDE--------------------YGDIQGL 313 (423)
T ss_pred cc------HhHHHHHhc-----CCeecCCCCcHHHHHHHHHHhcceEEEEEec--------------------cCcEEee
Confidence 22 122233333 3799999999999999999666677444332 1466789
Q ss_pred ecHHHHHHHHH
Q 016003 165 LTQEDIIRFIL 175 (397)
Q Consensus 165 ITq~DIi~~l~ 175 (397)
+|-+||+.=+.
T Consensus 314 VTLEDIlEEIV 324 (423)
T COG4536 314 VTLEDILEEIV 324 (423)
T ss_pred eeHHHHHHHHh
Confidence 99999997764
No 187
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.12 E-value=6.5e-06 Score=68.46 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=48.4
Q ss_pred hhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 335 ARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 335 ~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
..++|..++.++.+++++.++++.|.+++++.+||+|++|+++|+||..||.+
T Consensus 60 v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 60 VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 34567788999999999999999999999999999999899999999999864
No 188
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.95 E-value=2.3e-05 Score=77.88 Aligned_cols=163 Identities=14% Similarity=0.122 Sum_probs=114.7
Q ss_pred HHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc-------CCCCChhh-hhcCChhhhccCCCCC
Q 016003 35 ALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD-------SNSLSPSL-ALKQPVSVLLPQLLPP 106 (397)
Q Consensus 35 ~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~-------~~l~~~~~-~~~~~V~~lm~~~~~~ 106 (397)
.|.++.-...|.+.++ ..-|++.+...+++.- .|-....+ ..-+.|+.+- +..-+
T Consensus 54 ~ltr~itl~tPlvsSp----------------MDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~-~g~~~ 116 (503)
T KOG2550|consen 54 KLTRNITLNTPLVSSP----------------MDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYE-NGFIN 116 (503)
T ss_pred hhhhcccccCceeccC----------------CcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhh-ccccc
Confidence 3556667777888864 4578889888777631 11111111 1112333332 11123
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
.++...|.+++-++++... +|+..++|..+.. -+++++|+||-+|+ +|+-++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~------------------~~~KLvG~vtsrdi-~f~~~~-------- 169 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK------------------RGSKLVGIITSRDI-QFLEDN-------- 169 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCc------------------ccceeEEEEehhhh-hhhhcc--------
Confidence 3677899999999999777 7888887765432 23588999999997 676322
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
...+++ +|++..++...+.++.++=+.+.++.- +.+||||++|++|.+|+.+||++
T Consensus 170 ~~~~~~--vmt~~~~~~~~gi~l~~~neiL~~~kk--Gkl~iv~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 170 SLLVSD--VMTKNPVTGAQGITLKEANEILKKIKK--GKLPVVDDKGELVAMLSRTDLMK 225 (503)
T ss_pred cchhhh--hcccccccccccccHHHHHHHHHhhhc--CCcceeccCCceeeeeehhhhhh
Confidence 233343 788877999999999999999999877 99999999999999999999977
No 189
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.91 E-value=1.8e-05 Score=65.77 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=46.4
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
.++++ +|.+++.++.+++++.+|++.|...++ ..+||+|++|+++|+||..||.
T Consensus 58 ~~v~d--im~~~~~~v~~~~~l~~a~~~~~~~~~--~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRD--VINRKPVTARPNDPLREALNLMHEHNI--RTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHH--hcCCCCCEECCcCcHHHHHHHHHHcCC--CEEEEECCCCeEEEEEEHHHhh
Confidence 34555 788899999999999999999999988 9999999999999997755543
No 190
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00016 Score=74.37 Aligned_cols=118 Identities=18% Similarity=0.192 Sum_probs=99.0
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhh
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNS-----DESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCK 81 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~-----~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~ 81 (397)
..+++-+| ..+.++++++.|+.+|+..+.+. .+..+-|+|. +++++|+++.++++..
T Consensus 131 e~taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-------------~~~L~Gvvsl~~Ll~a--- 192 (451)
T COG2239 131 EDTAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-------------KGKLLGVVSLRDLLTA--- 192 (451)
T ss_pred hhhhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-------------ccceEEEeeHHHHhcC---
Confidence 45677777 57899999999999999999954 5788999996 4689999999999832
Q ss_pred cCCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 82 DSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 82 ~~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
..+.+++++|... ++.|.+++...++..+|. ++.-.+||++++ ++
T Consensus 193 ---------~~~~~i~~im~~~----~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~---------------------~~ 238 (451)
T COG2239 193 ---------EPDELLKDLMEDD----VVSVLADDDQEEVARLFEKYDLLAVPVVDED---------------------NR 238 (451)
T ss_pred ---------CcHhHHHHHhccc----ceeecccCCHHHHHHHHHHhCCeecceECCC---------------------Cc
Confidence 2246799999755 899999999999999999 788888888643 57
Q ss_pred eeeeecHHHHHHHHHh
Q 016003 161 EFCWLTQEDIIRFILS 176 (397)
Q Consensus 161 ~~~IITq~DIi~~l~~ 176 (397)
.+|+||+.|++.-+-+
T Consensus 239 LiG~itiDDiidvi~e 254 (451)
T COG2239 239 LIGIITIDDIIDVIEE 254 (451)
T ss_pred eeeeeeHHHHHHHHHH
Confidence 8999999999998875
No 191
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.69 E-value=6e-05 Score=78.42 Aligned_cols=154 Identities=16% Similarity=0.113 Sum_probs=95.6
Q ss_pred CCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-----CcEEEeeccCcccCcchhHHHHHhhcChhhhhhh--
Q 016003 193 GIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-----GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY-- 265 (397)
Q Consensus 193 ~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-----g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~-- 265 (397)
++|+++|++++.-+.+....+.+..... .|.||||+. +++.|+|=.++|....++ +-++.-
T Consensus 586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~H--ngFPVvd~~~~~~~~~l~GlILRshl~vlL~~----------~~f~~~~~ 653 (762)
T KOG0474|consen 586 EVMSKPVICLNRVEKVAVIVDVLKSTNH--NGFPVVDEPPSNEAGRLHGLILRSHLLVLLKK----------RVFVEESR 653 (762)
T ss_pred hhccCCeEEEechhhHHHHHHHHHhcCc--CCCccccCCCCccchhhhHHHHHHHHHHHHHh----------hhhhccCc
Confidence 3899999999999999999999999877 999999973 477888655444432211 111100
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
..++.|. +..-.+.+ ++. ..|+ +.+- .-+++|. .... .....|...++|
T Consensus 654 ~~~~~~~-------------~~~~~~~d-~a~---r~~~---i~dv-~lt~~e~----~~yv------Dl~p~~n~sPyt 702 (762)
T KOG0474|consen 654 STFDLPV-------------RRKFTFRD-FAK---REPS---IEDV-HLTSEEM----EMYV------DLHPFMNPSPYT 702 (762)
T ss_pred cccCcch-------------hhcCCHHH-hhh---cCCc---hhhh-hcchHhH----hhcc------ccccccCCCCcc
Confidence 0000000 00000000 010 0000 0000 0000000 0000 011256788999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+.+++++..+...+.+-+.+|+.||+..++.+|++|+.|+.++=
T Consensus 703 V~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 703 VPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred cCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 99999999999999999999999999999999999999999764
No 192
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00023 Score=66.21 Aligned_cols=116 Identities=18% Similarity=0.266 Sum_probs=95.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCC-cEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchh
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDG-FLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDL 275 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g-~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l 275 (397)
...+++..+.++.+++..|.+... |..||+.++. .+.|+ |-+.||+.|+....
T Consensus 77 SQM~~l~~~~~l~~~l~~iiesaH--SRfPVi~edkD~v~GI-------------------L~AKDLL~~~~~~~----- 130 (293)
T COG4535 77 SQMITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHVEGI-------------------LLAKDLLPFMRSDA----- 130 (293)
T ss_pred HHheeccccCCHHHHHHHHHHhcc--ccCCcccCCchhhhhh-------------------hhHHHHHHHhcCCc-----
Confidence 569999999999999999999988 9999998754 88898 78899888542110
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v 355 (397)
+.|. + .-+-+|++.+...-.+...
T Consensus 131 -----------------------------------------~~F~------i---------~~lLRPav~VPESKrvd~l 154 (293)
T COG4535 131 -----------------------------------------EPFD------I---------KELLRPAVVVPESKRVDRL 154 (293)
T ss_pred -----------------------------------------cccc------H---------HHhcccceecccchhHHHH
Confidence 0000 0 0124588999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
+..+..++.|---|||+=|-+-|+||..|||..++..++
T Consensus 155 LkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE 193 (293)
T COG4535 155 LKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE 193 (293)
T ss_pred HHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence 999999999999999999999999999999999987765
No 193
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.0011 Score=67.66 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=84.2
Q ss_pred EEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhhhcc
Q 016003 22 ALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLP 101 (397)
Q Consensus 22 ~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~lm~ 101 (397)
...++.+..+|++.|.+++..++.|+|.. ++++|+++..++..+..++ .++.+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~ 344 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIERG-------------NKFVGAVSIDSLKTALTQQ-----------QGLDAALI 344 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEcCC-------------CcEEEEEeHHHHHhhhhcC-----------Cchhhhhc
Confidence 44567789999999999999999999973 6899999999998775421 23555564
Q ss_pred CCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHh
Q 016003 102 QLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILS 176 (397)
Q Consensus 102 ~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~ 176 (397)
.. +.++.++++|.+++..+......++|+++ ++...|+||..++++.+.+
T Consensus 345 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 345 DA----PLAVDAQTPLSELLSHVGQAPCAVPVVDE---------------------DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred cC----CceeCCCCCHHHHHHHHHhCCCcEEEECC---------------------CCcEEEEEEHHHHHHHHHh
Confidence 33 78899999999999999854445777753 2567899999999999864
No 194
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.53 E-value=0.0013 Score=66.30 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=85.2
Q ss_pred EEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhhhc
Q 016003 21 RALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLL 100 (397)
Q Consensus 21 i~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~lm 100 (397)
+...++.+..++++.|..+++.++.|+|. ++++.|.++..++..|+... ..+.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~ 308 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDR-------------QNKLVGVVDVESIKQARKKA-----------QGLQDVL 308 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcC-------------CCCEEEEEeHHHHHHHhhcC-----------Cchhhhh
Confidence 45666778999999999999999999996 46899999999998886532 2356666
Q ss_pred cCCCCCceEEeCCCCCHHHHHHHHhc-CCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHh
Q 016003 101 PQLLPPLVMHVEPSCSLLEAMDLMLG-GAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILS 176 (397)
Q Consensus 101 ~~~~~~~~~~V~~~~sL~~al~~m~~-g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~ 176 (397)
... +.++.++++|.+++..|.+ +.. ++|++++ ++..|+||..++++.+..
T Consensus 309 ~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---------------------~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 309 IDD----IYTVDAGTLLRETVRKVLKAGIK-VPVVDED---------------------QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ccC----CceECCCCcHHHHHHHHHhCCCC-EEEECCC---------------------CcEEEEEEHHHHHHHHHh
Confidence 433 6789999999999999994 544 8887532 467899999999999875
No 195
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.50 E-value=0.00031 Score=47.30 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=42.3
Q ss_pred eEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHH
Q 016003 20 LRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYL 79 (397)
Q Consensus 20 li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l 79 (397)
.+++++++++.++++.|.++++..+||++.+ ++++|+++..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-------------GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-------------CeEEEEEEHHHHHHhh
Confidence 5778999999999999999999999999963 5899999999998764
No 196
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.0013 Score=65.15 Aligned_cols=130 Identities=16% Similarity=0.298 Sum_probs=100.8
Q ss_pred ccCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhh
Q 016003 185 PALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGD 261 (397)
Q Consensus 185 ~~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~D 261 (397)
..-+++| +|. .++..+..+.|..+.++.+..... +.+|+-.++ ..++|+ |-.+|
T Consensus 198 e~~tV~D--IMvpR~~i~~id~d~~~e~iv~ql~~s~H--tRiplyr~~~DnIiGv-------------------lh~r~ 254 (423)
T COG4536 198 ENLTVSD--IMVPRNEIIGIDIDDPWEEIVRQLLHSPH--TRIPLYRDDLDNIIGV-------------------LHVRD 254 (423)
T ss_pred ccceeee--eeccccceeeecCCCCHHHHHHHHhhCCC--CceeeecCChhHhhhh-------------------hhHHH
Confidence 3556666 576 469999999999999999999888 999998764 368897 67777
Q ss_pred hhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC
Q 016003 262 LMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA 341 (397)
Q Consensus 262 l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
+.+++... + .+.. +++ ...-.
T Consensus 255 llr~l~e~-----------------~------~~~k-------------------~d~-----------------~~~a~ 275 (423)
T COG4536 255 LLRLLNEK-----------------N------EFTK-------------------EDI-----------------LRAAD 275 (423)
T ss_pred HHHHhhcc-----------------C------cccH-------------------hHH-----------------HHHhc
Confidence 77643210 0 0000 000 00134
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhhh
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETM 396 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~~ 396 (397)
++..++..++|..-+.+|.++|-|-=-|||+=|.+.|+||+.|||..++..++++
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde 330 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDE 330 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccccc
Confidence 7899999999999999999999999999999999999999999999999877643
No 197
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00055 Score=63.77 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=110.1
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
...|+|+|.....+++++.+.++.+-+..+.+..-+.-||...+ ++.+.||+-..|++.|+..+...
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed------------kD~v~GIL~AKDLL~~~~~~~~~- 132 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHVEGILLAKDLLPFMRSDAEP- 132 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC------------chhhhhhhhHHHHHHHhcCCccc-
Confidence 46799999988889999999999999999999999999999864 57899999999999998764321
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
-.+.+++. |.+.|...-.|...++-|- +..|=..|++.= |..-|.|
T Consensus 133 -------F~i~~lLR-----Pav~VPESKrvd~lLkeFR~~RnHMAIViDEf---------------------GgVsGLV 179 (293)
T COG4535 133 -------FDIKELLR-----PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF---------------------GGVSGLV 179 (293)
T ss_pred -------ccHHHhcc-----cceecccchhHHHHHHHHHhhcCceEEEEecc---------------------CCeeeeE
Confidence 23566663 3567777888888888887 565555555421 3566799
Q ss_pred cHHHHHHHHHhcc-CCCCCCccCCccccCCCCcCeEEEeCCCcHHH
Q 016003 166 TQEDIIRFILSSI-SLFSPIPALSIDSLGIISTDVVAVDYHSPASL 210 (397)
Q Consensus 166 Tq~DIi~~l~~~~-~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~ 210 (397)
|-+||+.-+..-+ +++..--...|.. ..+.-++|..=+++.+
T Consensus 180 TIEDiLEqIVGdIEDE~Deee~~dI~~---ls~~~~~VrALT~Ied 222 (293)
T COG4535 180 TIEDILEQIVGDIEDEYDEEEDADIRQ---LSRHTWRVRALTEIED 222 (293)
T ss_pred EHHHHHHHHhcccccccchhhhhhhHh---hcCCceEEEecccHHH
Confidence 9999998886432 2222111111222 2344566666666543
No 198
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00074 Score=70.56 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=97.3
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc-
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD- 82 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~- 82 (397)
.+++.+++|+|. +++++++.-+.++...++|...+--+-||+|.... + ..+++-|+|=..-++..|.+.
T Consensus 578 ~mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~-~-------~~~~l~GlILRshl~vlL~~~~ 647 (762)
T KOG0474|consen 578 YMRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS-N-------EAGRLHGLILRSHLLVLLKKRV 647 (762)
T ss_pred HhhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCC-c-------cchhhhHHHHHHHHHHHHHhhh
Confidence 356778999994 58999999999999999999999999999996421 0 015788988888888766531
Q ss_pred ---C---CC--CC------hhhh-----------------hcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCce
Q 016003 83 ---S---NS--LS------PSLA-----------------LKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQN 130 (397)
Q Consensus 83 ---~---~l--~~------~~~~-----------------~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r 130 (397)
+ +. .. .+.+ +-.+...+|.. .+++|.+++|+..+..+|- -|.|+
T Consensus 648 f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~----sPytV~~~mSl~k~~~lFR~lGLRh 723 (762)
T KOG0474|consen 648 FVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP----SPYTVPETMSLAKAFILFRQLGLRH 723 (762)
T ss_pred hhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC----CCcccCcccchHHHHHHHHHhccee
Confidence 0 00 00 0000 01122223332 2899999999999999998 59999
Q ss_pred EEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 131 LVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 131 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
++|+... +...||+|+.|+.+|=
T Consensus 724 LlVv~~~---------------------~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 724 LLVVPKT---------------------NRVVGILTRKDLARYR 746 (762)
T ss_pred EEEecCC---------------------CceeEEEehhhhhhHH
Confidence 9887532 2347899999999773
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0067 Score=63.67 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=88.1
Q ss_pred CeEEEeCC-CcHHHHHHHHHhcCCCCCEEEEEcC--CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 198 DVVAVDYH-SPASLALEAISRSLFDQTSVAVVDS--DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 198 ~v~tv~~~-~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
...+++.+ .++.|...+|.+... ++.|||=+ ...++|+|.++||.-.- +++++...+.-..
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~--sgfpvvl~~~sq~lvGfv~rr~l~~~i---------~~ar~~q~~~~~~----- 620 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDF--SGFPVVLSEDSQRLVGFVLRRNLFLAI---------LNARKIQSFIVTT----- 620 (696)
T ss_pred hheeccccceeHHHHHHHHhhccc--CCceEEEccccceeEEEEchHHHHHHH---------hhhccccccceec-----
Confidence 35666655 899999999999988 99999844 35999998766665422 3333333321100
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMA 354 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~ 354 (397)
.+ .+.+ +.|. . ..+ .+ ...++ +.++...++|+....+...
T Consensus 621 ------------~~-----~f~~---~~~~----~--~~~--~~----~~~~l--------k~il~~tp~tv~d~tp~~~ 660 (696)
T KOG0475|consen 621 ------------SI-----YFND---PSPS----A--VAG--IP----SRLDL--------KDILDMTPFTVTDLTPMET 660 (696)
T ss_pred ------------cc-----ccCC---CCcc----c--cCC--CC----CCcCc--------eeeccCCcccccccCcHHH
Confidence 00 0010 0000 0 000 00 00111 1346678999999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+++++.+-+++.+-|..+ |++.|+||..|+|+..
T Consensus 661 v~~~F~~lg~~~~~v~~~-G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 661 VVDLFRKLGLRQILVTKN-GILLGIITKKDCLRHT 694 (696)
T ss_pred HHHHHHhhCceEEEEccC-CeeEeeeehHHHHHhh
Confidence 999999999999988765 9999999999999864
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.058 Score=56.87 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=88.3
Q ss_pred cCCCCeEEEeCC-hhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhh----cCCCCChh
Q 016003 15 LGKPALRALSIS-AAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCK----DSNSLSPS 89 (397)
Q Consensus 15 ~~k~~li~v~~~-~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~----~~~l~~~~ 89 (397)
...++++.++.+ .|+++...+|.+...+..||+-++. +++++|+++.+|+..-+.. ++...+..
T Consensus 553 ~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~-----------sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~ 621 (696)
T KOG0475|consen 553 RSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED-----------SQRLVGFVLRRNLFLAILNARKIQSFIVTTS 621 (696)
T ss_pred cCchhheeccccceeHHHHHHHHhhcccCCceEEEccc-----------cceeEEEEchHHHHHHHhhhccccccceecc
Confidence 333468888887 9999999999999999999997643 4799999999999876642 11111111
Q ss_pred hhhcC-------------ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhccccccccc
Q 016003 90 LALKQ-------------PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLT 155 (397)
Q Consensus 90 ~~~~~-------------~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~ 155 (397)
...+. ..+++|+.+ +.+|.-.++..-++.+|. -|++...|..
T Consensus 622 ~~f~~~~~~~~~~~~~~~~lk~il~~t----p~tv~d~tp~~~v~~~F~~lg~~~~~v~~-------------------- 677 (696)
T KOG0475|consen 622 IYFNDPSPSAVAGIPSRLDLKDILDMT----PFTVTDLTPMETVVDLFRKLGLRQILVTK-------------------- 677 (696)
T ss_pred cccCCCCccccCCCCCCcCceeeccCC----cccccccCcHHHHHHHHHhhCceEEEEcc--------------------
Confidence 11111 244555544 677888888888888887 4888877753
Q ss_pred CCCCceeeeecHHHHHHHH
Q 016003 156 NHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 156 ~~~~~~~~IITq~DIi~~l 174 (397)
.|+..|+||..|++++.
T Consensus 678 --~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 678 --NGILLGIITKKDCLRHT 694 (696)
T ss_pred --CCeeEeeeehHHHHHhh
Confidence 25678899999999874
No 201
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.98 E-value=0.1 Score=51.30 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=41.5
Q ss_pred CCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 340 RAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 340 ~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
..++.++.+++.+.+.+..+.+.. ..++|||++++++|+|++..++.++..
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 446677888888888777666544 568999999999999999999999864
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.97 E-value=0.039 Score=55.97 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 340 RAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 340 ~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
.....+++++++|.+++..+.+.. +-++|+|+ |+++|+|++.+++.++..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTG-GAILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCC-CCeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 346789999999999999888776 45999997 999999999999999864
No 203
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=88.90 E-value=0.67 Score=44.48 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.+++..++..+..-+||||++|+++|.||+.|++..
T Consensus 273 ~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 273 RDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred HHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 337888889999999999999999999999999865
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=87.38 E-value=0.46 Score=48.29 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=36.1
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcc
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTL 243 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl 243 (397)
.++.++++++++.+++..+.+.+. .+||+|+ |+++|+|+..+|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~-~~~~g~~~~~~~ 375 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRTGG---AILLVEN-GRIVGVIGDDNI 375 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcCCC---CeEEeeC-CeEEEEEeHHHH
Confidence 468899999999999999988766 7999996 999999764333
No 205
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.33 E-value=1.1 Score=44.38 Aligned_cols=42 Identities=43% Similarity=0.529 Sum_probs=35.9
Q ss_pred CcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeecc
Q 016003 196 STDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISP 240 (397)
Q Consensus 196 ~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~ 240 (397)
...+.++.+++++.+.+..+.+... .+||||++|+++|+|+.
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~~---p~aVvde~~r~vG~i~~ 375 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAPC---PVAVVDEDGRYVGIISR 375 (386)
T ss_pred cccccccCccchHHHHHHHHhcCCC---ceeEEcCCCcEEEEecH
Confidence 4467899999999988888887665 99999999999999653
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=71.36 E-value=6.9 Score=37.75 Aligned_cols=43 Identities=26% Similarity=0.201 Sum_probs=36.4
Q ss_pred EeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHH
Q 016003 23 LSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICY 78 (397)
Q Consensus 23 v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~ 78 (397)
+....+-.+|+..+...++..+||+|.+ |+++|.++..|++.+
T Consensus 266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-------------g~~~G~vt~~~l~~~ 308 (309)
T COG1125 266 LLEGFVDRDALSDFLARGRSVLPVVDED-------------GRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHHHHHHhcCCceeEEECCC-------------CcEeeEEEHHHHhhh
Confidence 3444566779999999999999999974 689999999999875
No 207
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=69.85 E-value=5.9 Score=43.25 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=52.2
Q ss_pred hhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCC--cEEEEEehHHHHHHHHHHH
Q 016003 335 ARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDC--TLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 335 ~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~--~lvGvVt~~DIl~~l~~~~ 393 (397)
...+|.+++..+..+.|..+.-+.+....++-+|+||+.. -|+|-|.++.+.+.+-.|+
T Consensus 590 VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 590 VEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence 3457999999999999999999888888799999999854 7999999999999997764
No 208
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=67.94 E-value=7.5 Score=40.95 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=76.0
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHH-HHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIA-DALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~-~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
|....++|+|..--.+..++.+..+. +......+++.+.+||++.+ .+..+|.+=....++|+....
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~------------~~~~i~~~L~~~~~~~~~~~~ 268 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE------------PKNKIGGLLVMNLLRLLQVEV 268 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc------------ccchhhHHHHhhhhhhhcccc
Confidence 34567889997666788889899998 66666679999999999964 234555433334444443211
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEec
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPI 135 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~ 135 (397)
. .-..+++..+-.. +..++.++++.+.++.|.+|-.+..|+.
T Consensus 269 ~------~~~~~v~~~~~~~----l~~vp~~~~~~~~l~~~~~~~~H~~~v~ 310 (498)
T KOG2118|consen 269 P------LEPLPVSESALLR----LPLVPENMPLLDLLNEFQKGKSHMAVVR 310 (498)
T ss_pred c------cccccchhhhccc----cccCCCcccHHHHHHHHhhhhceeEEEe
Confidence 1 1235677777554 7788999999999999998777776654
No 209
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=53.17 E-value=29 Score=26.89 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=18.8
Q ss_pred CcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 364 VTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 364 i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
...|-|||++|..+|++++.+-++..-
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAK 38 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHH
Confidence 456778888888888888888877653
No 210
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=42.38 E-value=28 Score=38.32 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=54.6
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhh
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCK 81 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~ 81 (397)
.++.|.++|. +++..|..++|..|--++|....+.+.|++++.. ..-++|.|..+-+..+|..
T Consensus 586 h~v~VE~iMV--~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~e-----------smiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 586 HTVKVEHIMV--TDVKYITKDTTYRELREALQTTTLRSFPLVESKE-----------SMILLGSVARRYLTALLQR 648 (931)
T ss_pred eEEEeeeecc--ccceeeeccCcHHHHHHHHHhCccceeccccCcc-----------cceeeehhHHHHHHHHHHh
Confidence 4677899995 7899999999999999999988899999999753 3579999999999988864
No 211
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=28.76 E-value=88 Score=24.73 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEehH
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVTFS 383 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~ 383 (397)
.+.+..+++.+-+.+||.+++++++|.+...
T Consensus 32 ~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 32 PEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 3444666667669999999999999998753
No 212
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=28.52 E-value=57 Score=26.79 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=12.9
Q ss_pred EEEEEcCCCcEEEEEeh
Q 016003 366 YVWVIEDDCTLTGIVTF 382 (397)
Q Consensus 366 rl~VVd~~~~lvGvVt~ 382 (397)
..||.|++|+++|+|+-
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 47999988999999974
No 213
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=24.56 E-value=42 Score=26.77 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=16.8
Q ss_pred HhcCCCCCEEEEEcCCCcEEEe
Q 016003 216 SRSLFDQTSVAVVDSDGFLIGE 237 (397)
Q Consensus 216 ~~~~i~~s~vpVVd~~g~lvG~ 237 (397)
...+- |+=||+|.+|++||+
T Consensus 101 ~~~G~--SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 101 TRPGS--SGGPVFDSDGRVVGI 120 (120)
T ss_dssp -STTT--TTSEEEETTSEEEEE
T ss_pred cCCCc--EeHhEECCCCEEEeC
Confidence 34677 999999999999995
No 214
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=23.97 E-value=67 Score=26.38 Aligned_cols=17 Identities=47% Similarity=0.612 Sum_probs=13.2
Q ss_pred CEEEEEcCCCcEEEeec
Q 016003 223 TSVAVVDSDGFLIGEIS 239 (397)
Q Consensus 223 s~vpVVd~~g~lvG~is 239 (397)
...||.|.+|+++|.|+
T Consensus 92 ~~~PV~d~~g~viG~V~ 108 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVS 108 (116)
T ss_dssp EEEEEE-TTS-EEEEEE
T ss_pred EEEeeECCCCcEEEEEE
Confidence 58999999999999875
No 215
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=22.07 E-value=80 Score=23.45 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=15.9
Q ss_pred cEEEEEcCCCcEEEEEeh
Q 016003 365 TYVWVIEDDCTLTGIVTF 382 (397)
Q Consensus 365 ~rl~VVd~~~~lvGvVt~ 382 (397)
++++|++++++++|.+..
T Consensus 3 ~~~~~~~~~~~ivG~~~~ 20 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRL 20 (79)
T ss_dssp EEEEEEEETTEEEEEEEE
T ss_pred cEEEEEEECCEEEEEEEE
Confidence 678999999999999875
No 216
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=21.36 E-value=75 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=16.9
Q ss_pred EEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 367 VWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 367 l~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
.||.|++|+++|++...=-+..|.+
T Consensus 19 ~pi~~~~g~~~Gvv~~di~l~~l~~ 43 (81)
T PF02743_consen 19 VPIYDDDGKIIGVVGIDISLDQLSE 43 (81)
T ss_dssp EEEEETTTEEEEEEEEEEEHHHHHH
T ss_pred EEEECCCCCEEEEEEEEeccceeee
Confidence 6899977999999765433333333
Done!