Query 016004
Match_columns 397
No_of_seqs 120 out of 1325
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 02:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 7.3E-72 1.6E-76 550.0 31.7 325 1-396 4-338 (375)
2 PTZ00466 actin-like protein; P 100.0 3.1E-69 6.6E-74 531.9 31.3 321 3-396 13-343 (380)
3 PTZ00281 actin; Provisional 100.0 1.9E-69 4.1E-74 534.0 29.9 324 2-396 6-339 (376)
4 KOG0676 Actin and related prot 100.0 4.3E-69 9.4E-74 515.5 23.7 318 1-394 6-333 (372)
5 PTZ00004 actin-2; Provisional 100.0 2E-67 4.3E-72 520.2 31.6 325 2-396 6-341 (378)
6 KOG0677 Actin-related protein 100.0 4.5E-67 9.8E-72 465.1 19.6 323 2-395 4-349 (389)
7 PTZ00280 Actin-related protein 100.0 9.4E-65 2E-69 507.1 32.8 330 2-396 4-373 (414)
8 KOG0679 Actin-related protein 100.0 2E-63 4.4E-68 463.7 23.3 322 3-392 12-381 (426)
9 smart00268 ACTIN Actin. ACTIN 100.0 1.7E-61 3.7E-66 478.2 31.3 326 3-396 2-336 (373)
10 PF00022 Actin: Actin; InterP 100.0 4.9E-62 1.1E-66 485.4 26.4 323 2-396 4-356 (393)
11 KOG0680 Actin-related protein 100.0 2E-61 4.3E-66 440.4 26.5 356 2-395 3-361 (400)
12 cd00012 ACTIN Actin; An ubiqui 100.0 1.7E-59 3.7E-64 463.6 31.2 324 4-396 1-336 (371)
13 COG5277 Actin and related prot 100.0 2.3E-56 5E-61 442.5 28.7 341 3-396 7-407 (444)
14 KOG0681 Actin-related protein 100.0 1E-51 2.2E-56 398.8 22.9 383 3-395 24-602 (645)
15 KOG0678 Actin-related protein 100.0 3E-48 6.5E-53 354.7 14.4 319 3-379 5-342 (415)
16 PRK13930 rod shape-determining 100.0 4.7E-36 1E-40 292.5 17.1 294 2-376 8-305 (335)
17 PRK13927 rod shape-determining 100.0 2.8E-35 6.1E-40 286.9 18.3 292 2-376 5-301 (334)
18 TIGR00904 mreB cell shape dete 100.0 1.1E-32 2.3E-37 268.5 17.4 292 4-376 4-304 (333)
19 PRK13929 rod-share determining 100.0 1.5E-32 3.3E-37 267.3 18.0 290 3-376 5-303 (335)
20 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.5E-30 3.2E-35 249.1 16.8 303 3-395 2-309 (326)
21 KOG0797 Actin-related protein 100.0 9.7E-28 2.1E-32 231.3 21.0 323 56-395 177-574 (618)
22 PRK13928 rod shape-determining 100.0 1E-28 2.2E-33 240.8 14.2 292 4-376 5-300 (336)
23 COG1077 MreB Actin-like ATPase 99.9 8.5E-23 1.8E-27 189.3 16.6 305 2-393 6-317 (342)
24 TIGR02529 EutJ ethanolamine ut 99.7 7.4E-15 1.6E-19 136.2 18.2 137 61-217 28-165 (239)
25 PRK15080 ethanolamine utilizat 99.5 9.9E-13 2.1E-17 124.1 19.1 165 3-217 25-192 (267)
26 PRK13411 molecular chaperone D 99.3 7.8E-11 1.7E-15 124.4 19.4 188 1-198 1-236 (653)
27 PTZ00400 DnaK-type molecular c 99.3 1E-10 2.3E-15 123.6 20.1 98 94-198 175-276 (663)
28 CHL00094 dnaK heat shock prote 99.3 2.1E-10 4.5E-15 120.7 21.3 188 1-198 1-237 (621)
29 PRK00290 dnaK molecular chaper 99.3 1.3E-10 2.8E-15 122.5 18.1 188 1-198 1-235 (627)
30 TIGR01991 HscA Fe-S protein as 99.3 1.5E-10 3.2E-15 121.2 17.5 186 4-199 1-232 (599)
31 PLN03184 chloroplast Hsp70; Pr 99.2 1.1E-09 2.4E-14 115.9 22.8 188 1-198 38-274 (673)
32 TIGR02350 prok_dnaK chaperone 99.2 3.8E-10 8.3E-15 118.4 18.3 185 4-198 2-233 (595)
33 TIGR01174 ftsA cell division p 99.2 1.2E-09 2.7E-14 108.1 20.9 101 105-221 156-257 (371)
34 PRK13410 molecular chaperone D 99.2 7.4E-10 1.6E-14 117.0 19.8 188 1-198 1-237 (668)
35 PRK01433 hscA chaperone protei 99.2 8.6E-10 1.9E-14 115.0 19.5 186 3-199 20-244 (595)
36 PTZ00186 heat shock 70 kDa pre 99.2 1.1E-09 2.4E-14 115.2 19.7 98 94-198 161-262 (657)
37 PRK05183 hscA chaperone protei 99.2 9.8E-10 2.1E-14 115.4 17.6 186 3-199 20-252 (616)
38 PTZ00009 heat shock 70 kDa pro 99.2 2.1E-09 4.5E-14 113.7 20.0 101 94-198 141-244 (653)
39 PRK11678 putative chaperone; P 99.0 7.7E-09 1.7E-13 104.4 16.9 92 94-193 150-260 (450)
40 PF00012 HSP70: Hsp70 protein; 99.0 8.9E-09 1.9E-13 108.3 16.0 98 94-198 136-238 (602)
41 PRK09472 ftsA cell division pr 98.9 9.5E-09 2.1E-13 103.3 11.4 100 105-220 164-264 (420)
42 TIGR03739 PRTRC_D PRTRC system 98.8 1.1E-07 2.4E-12 92.2 13.3 184 7-199 2-215 (320)
43 PRK13917 plasmid segregation p 98.7 5.8E-07 1.3E-11 88.0 17.6 127 73-200 88-234 (344)
44 TIGR01175 pilM type IV pilus a 98.7 3.3E-06 7.2E-11 82.8 22.7 100 105-217 141-245 (348)
45 COG0443 DnaK Molecular chapero 98.7 1.6E-06 3.4E-11 90.4 18.9 189 2-199 5-223 (579)
46 PF11104 PilM_2: Type IV pilus 98.6 3.5E-06 7.5E-11 82.5 19.0 45 151-197 180-224 (340)
47 COG0849 ftsA Cell division ATP 98.4 8.9E-07 1.9E-11 87.8 8.6 103 105-222 163-265 (418)
48 KOG0100 Molecular chaperones G 97.8 0.00099 2.1E-08 64.5 14.9 115 95-216 174-298 (663)
49 PF06406 StbA: StbA protein; 97.6 0.00079 1.7E-08 65.3 12.5 115 78-198 81-212 (318)
50 KOG0104 Molecular chaperones G 97.5 0.0045 9.8E-08 64.3 15.9 99 94-199 159-276 (902)
51 COG4972 PilM Tfp pilus assembl 97.4 0.0014 3E-08 62.2 10.4 43 153-197 195-237 (354)
52 KOG0103 Molecular chaperones H 97.4 0.015 3.2E-07 60.2 18.1 100 93-199 137-247 (727)
53 COG4820 EutJ Ethanolamine util 97.2 0.00046 9.9E-09 60.9 5.0 62 116-189 115-176 (277)
54 KOG0101 Molecular chaperones H 96.9 0.013 2.9E-07 60.6 12.9 97 94-197 144-246 (620)
55 PRK10719 eutA reactivating fac 96.7 0.0066 1.4E-07 60.8 8.6 166 4-203 8-207 (475)
56 TIGR00241 CoA_E_activ CoA-subs 96.0 0.081 1.8E-06 49.3 11.4 46 151-196 91-137 (248)
57 TIGR03286 methan_mark_15 putat 94.5 0.32 7E-06 48.2 10.4 36 352-395 356-391 (404)
58 KOG0102 Molecular chaperones m 94.5 0.4 8.7E-06 48.7 11.0 116 94-216 161-285 (640)
59 PRK11031 guanosine pentaphosph 93.4 0.75 1.6E-05 47.4 11.2 93 94-192 79-171 (496)
60 PF06277 EutA: Ethanolamine ut 93.2 1.3 2.8E-05 44.7 12.0 170 4-203 5-204 (473)
61 TIGR03706 exo_poly_only exopol 92.9 0.74 1.6E-05 44.2 9.6 95 92-193 71-165 (300)
62 PRK10854 exopolyphosphatase; P 90.6 1.8 3.9E-05 44.9 10.1 93 93-191 83-175 (513)
63 COG1924 Activator of 2-hydroxy 90.3 6.5 0.00014 38.6 12.8 33 355-395 346-378 (396)
64 COG0248 GppA Exopolyphosphatas 83.0 4.1 8.8E-05 41.9 7.4 41 150-192 128-168 (492)
65 COG1521 Pantothenate kinase ty 77.9 27 0.00059 32.5 10.4 20 4-23 2-21 (251)
66 COG4819 EutA Ethanolamine util 75.1 20 0.00044 34.7 8.8 157 4-188 7-180 (473)
67 PF14450 FtsA: Cell division p 75.0 15 0.00032 29.9 7.2 58 154-220 2-70 (120)
68 PF01968 Hydantoinase_A: Hydan 73.1 3.5 7.6E-05 39.3 3.4 26 150-175 76-101 (290)
69 PF02541 Ppx-GppA: Ppx/GppA ph 70.3 7.9 0.00017 36.7 5.1 96 92-193 57-152 (285)
70 TIGR02261 benz_CoA_red_D benzo 66.4 5.4 0.00012 37.4 3.0 40 353-395 213-252 (262)
71 COG1548 Predicted transcriptio 64.0 4.9 0.00011 37.4 2.1 23 150-172 129-151 (330)
72 TIGR03123 one_C_unchar_1 proba 63.2 7 0.00015 37.8 3.2 27 150-176 127-153 (318)
73 TIGR03192 benz_CoA_bzdQ benzoy 62.2 5.4 0.00012 38.0 2.2 27 350-376 238-264 (293)
74 PF03309 Pan_kinase: Type III 62.0 82 0.0018 28.2 9.8 19 5-23 2-20 (206)
75 TIGR02259 benz_CoA_red_A benzo 58.9 14 0.0003 36.9 4.3 42 351-395 381-422 (432)
76 PRK13317 pantothenate kinase; 56.5 14 0.0003 35.1 3.9 61 331-396 201-263 (277)
77 TIGR00671 baf pantothenate kin 55.7 1.4E+02 0.003 27.6 10.4 18 5-22 2-19 (243)
78 COG4012 Uncharacterized protei 55.1 66 0.0014 30.2 7.8 45 125-175 207-251 (342)
79 PF03702 UPF0075: Uncharacteri 53.3 11 0.00024 37.2 2.7 39 333-376 271-309 (364)
80 smart00842 FtsA Cell division 47.7 47 0.001 29.2 5.7 23 63-85 36-58 (187)
81 PF08841 DDR: Diol dehydratase 45.3 1.3E+02 0.0029 28.6 8.2 96 108-216 96-191 (332)
82 PRK13321 pantothenate kinase; 43.6 1.5E+02 0.0033 27.4 8.8 19 4-22 2-20 (256)
83 TIGR03367 queuosine_QueD queuo 43.6 39 0.00085 26.1 4.0 49 65-121 42-91 (92)
84 cd08627 PI-PLCc_gamma1 Catalyt 43.5 44 0.00096 30.7 4.8 33 90-122 85-117 (229)
85 PRK13318 pantothenate kinase; 42.5 2.8E+02 0.0061 25.7 11.2 125 5-174 3-147 (258)
86 cd08626 PI-PLCc_beta4 Catalyti 42.3 46 0.00099 31.1 4.8 44 73-122 76-119 (257)
87 cd08630 PI-PLCc_delta3 Catalyt 41.8 47 0.001 31.1 4.9 44 73-122 74-117 (258)
88 PRK13324 pantothenate kinase; 41.4 3E+02 0.0066 25.7 12.3 19 4-22 2-20 (258)
89 cd08596 PI-PLCc_epsilon Cataly 41.0 49 0.0011 30.9 4.8 33 90-122 85-117 (254)
90 cd08594 PI-PLCc_eta Catalytic 41.0 50 0.0011 30.3 4.8 44 73-122 74-117 (227)
91 cd08629 PI-PLCc_delta1 Catalyt 40.4 50 0.0011 30.9 4.8 33 90-122 85-117 (258)
92 cd08631 PI-PLCc_delta4 Catalyt 39.5 52 0.0011 30.8 4.7 33 90-122 85-117 (258)
93 cd08632 PI-PLCc_eta1 Catalytic 39.2 55 0.0012 30.5 4.8 33 90-122 85-117 (253)
94 cd08592 PI-PLCc_gamma Catalyti 38.2 58 0.0013 29.9 4.8 33 90-122 85-117 (229)
95 cd08593 PI-PLCc_delta Catalyti 38.2 55 0.0012 30.6 4.7 44 73-122 74-117 (257)
96 PF01869 BcrAD_BadFG: BadF/Bad 38.2 6.4 0.00014 36.9 -1.5 45 332-381 206-250 (271)
97 cd08598 PI-PLC1c_yeast Catalyt 38.1 58 0.0013 30.0 4.8 33 90-122 85-117 (231)
98 cd08595 PI-PLCc_zeta Catalytic 38.0 57 0.0012 30.5 4.8 33 90-122 85-117 (257)
99 cd08591 PI-PLCc_beta Catalytic 37.8 58 0.0013 30.5 4.8 33 90-122 87-119 (257)
100 cd08633 PI-PLCc_eta2 Catalytic 37.7 60 0.0013 30.3 4.8 44 73-122 74-117 (254)
101 cd08597 PI-PLCc_PRIP_metazoa C 36.2 63 0.0014 30.3 4.8 33 90-122 85-117 (260)
102 cd08558 PI-PLCc_eukaryota Cata 35.9 68 0.0015 29.4 4.8 44 73-122 74-117 (226)
103 PF08735 DUF1786: Putative pyr 34.1 91 0.002 29.1 5.4 45 150-195 166-212 (254)
104 cd08628 PI-PLCc_gamma2 Catalyt 33.5 76 0.0016 29.7 4.8 33 90-122 85-117 (254)
105 cd08624 PI-PLCc_beta2 Catalyti 31.5 81 0.0018 29.6 4.7 44 73-122 76-120 (261)
106 PRK05082 N-acetylmannosamine k 31.4 3.9E+02 0.0084 25.0 9.6 139 1-175 1-145 (291)
107 cd08623 PI-PLCc_beta1 Catalyti 30.5 89 0.0019 29.3 4.7 44 73-122 76-120 (258)
108 cd08625 PI-PLCc_beta3 Catalyti 27.3 99 0.0021 29.0 4.5 44 73-122 76-120 (258)
109 PRK13326 pantothenate kinase; 25.0 5.7E+02 0.012 23.9 9.9 21 3-23 7-27 (262)
110 PRK09585 anmK anhydro-N-acetyl 24.8 66 0.0014 31.8 3.0 23 353-375 288-310 (365)
111 cd08599 PI-PLCc_plant Catalyti 24.6 1.4E+02 0.0031 27.4 4.9 37 90-127 85-121 (228)
112 PRK09472 ftsA cell division pr 21.9 2.5E+02 0.0053 28.2 6.6 45 332-376 304-353 (420)
113 PLN02230 phosphoinositide phos 21.5 1.4E+02 0.003 31.7 4.7 33 90-122 198-230 (598)
114 PLN02952 phosphoinositide phos 21.4 1.5E+02 0.0032 31.5 4.9 33 90-122 207-239 (599)
115 PLN02222 phosphoinositide phos 21.1 1.3E+02 0.0029 31.6 4.5 34 89-122 186-219 (581)
116 smart00732 YqgFc Likely ribonu 20.4 2.8E+02 0.0061 20.8 5.4 46 153-198 3-49 (99)
117 PLN02223 phosphoinositide phos 20.1 1.7E+02 0.0036 30.5 4.9 45 73-122 179-223 (537)
118 PLN02228 Phosphoinositide phos 20.1 1.6E+02 0.0035 31.0 4.8 33 90-122 190-222 (567)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=7.3e-72 Score=549.97 Aligned_cols=325 Identities=28% Similarity=0.536 Sum_probs=298.4
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC--------CcccCCcccccccccccccceeeCcccCCcccCH
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINS 72 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~ 72 (397)
|.++||||+||+++|+||||++.|++++||++++++.. +++++|+++. . ....+.+++|+++|.|.||
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~--~--~~~~~~l~~Pi~~G~I~dw 79 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQ--A--KRGVLAIKEPIQNGIINSW 79 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhh--c--cccCcEEcccCcCCEEcCH
Confidence 67899999999999999999999999999999987643 2567888876 2 2356889999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCce
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQC 152 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~t 152 (397)
|.+|.+|+|+|.+.|+++|+++|++++|++++++..|++++|+|||+|++|++++.++++|++| |+| ++|
T Consensus 80 d~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lsly------a~g----~~t 149 (375)
T PTZ00452 80 DDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLY------TSG----KTI 149 (375)
T ss_pred HHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHH------HCC----Cce
Confidence 9999999999998999999999999999999999999999999999999999999999999999 999 999
Q ss_pred EEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCC--hHHHHHHHHHhcCccccCHHHHHHH
Q 016004 153 SLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMD--ETFIIDDVKEKLCFVSLDVARDLQI 230 (397)
Q Consensus 153 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~--~~~~~~~iKe~~~~v~~d~~~~~~~ 230 (397)
|||||+|++.|+|+||+||+++.+++.++++||++++++|.++|+.+++++.. +...++++||++||++.|+.+++..
T Consensus 150 glVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~ 229 (375)
T PTZ00452 150 GLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRI 229 (375)
T ss_pred eeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877653 4578999999999999998877654
Q ss_pred HHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecc
Q 016004 231 ARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTN 310 (397)
Q Consensus 231 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~ 310 (397)
... .+...+.|+||||+ .|.+++
T Consensus 230 ~~~---~~~~~~~y~LPDg~------------------------------------------------------~i~l~~ 252 (375)
T PTZ00452 230 YKE---SNSQDSPYKLPDGN------------------------------------------------------ILTIKS 252 (375)
T ss_pred hhc---cCCcCceEECCCCC------------------------------------------------------EEEeeh
Confidence 331 22345679999988 799999
Q ss_pred cccccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecC
Q 016004 311 ERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQ 390 (397)
Q Consensus 311 er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~ 390 (397)
|||.|||+||+|+++|.+..||+++|.++|.+||+|.|+.|++|||||||+|++|||.+||++||++++|.+++++|.++
T Consensus 253 er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~ 332 (375)
T PTZ00452 253 QKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAP 332 (375)
T ss_pred HHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred CCCCCC
Q 016004 391 EEYSHP 396 (397)
Q Consensus 391 ~~~~~~ 396 (397)
+++.|.
T Consensus 333 ~~r~~~ 338 (375)
T PTZ00452 333 PDRRFS 338 (375)
T ss_pred CCccee
Confidence 998875
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=3.1e-69 Score=531.88 Aligned_cols=321 Identities=28% Similarity=0.548 Sum_probs=291.7
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC--------CcccCCcccccccccccccceeeCcccCCcccCHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDL 74 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~ 74 (397)
++||||+||+++|+||||++.|+++|||++++++.. +++++|+++. .. .....+++|+++|.|.|||.
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~--~~--~~~~~l~~Pi~~G~v~dwd~ 88 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAE--EY--RGLLKVTYPINHGIIENWND 88 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhh--hh--CcCceeCccccCCeECCHHH
Confidence 689999999999999999999999999999987643 3456788876 32 23567899999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEE
Q 016004 75 QRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSL 154 (397)
Q Consensus 75 ~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tgl 154 (397)
+|.+|+|+| +.|+++|+++||+|++++++++..|++++|++||+|++|+++++++++|++| |+| .+||+
T Consensus 89 ~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~------a~g----~~tgl 157 (380)
T PTZ00466 89 MENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLY------SCG----KTNGT 157 (380)
T ss_pred HHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHH------hcC----CceEE
Confidence 999999999 5789999999999999999999999999999999999999999999999999 999 99999
Q ss_pred EEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHhcCccccCHHHHHHHHH
Q 016004 155 VVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINV--MDETFIIDDVKEKLCFVSLDVARDLQIAR 232 (397)
Q Consensus 155 VVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~--~~~~~~~~~iKe~~~~v~~d~~~~~~~~~ 232 (397)
|||+|++.|+|+||+||+++.+++.++++||++++++|+++|++++..+ ..+.++++++||++|||+.|+.+++...
T Consensus 158 VVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~- 236 (380)
T PTZ00466 158 VLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSS- 236 (380)
T ss_pred EEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhc-
Confidence 9999999999999999999999999999999999999999998876544 3346789999999999999988765432
Q ss_pred hcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecccc
Q 016004 233 KRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNER 312 (397)
Q Consensus 233 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er 312 (397)
........|+||||. .|.++.||
T Consensus 237 ---~~~~~~~~y~LPdg~------------------------------------------------------~i~l~~er 259 (380)
T PTZ00466 237 ---EKALTTLPYILPDGS------------------------------------------------------QILIGSER 259 (380)
T ss_pred ---cccccceeEECCCCc------------------------------------------------------EEEEchHH
Confidence 112234679999987 78999999
Q ss_pred cccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCCC
Q 016004 313 FLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 392 (397)
Q Consensus 313 ~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~ 392 (397)
|.+||+||+|+++|.+..+|+++|.++|.+||+|.|+.||+||||+||+|++|||.+||++||++++|.+++++|+.+++
T Consensus 260 ~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~ 339 (380)
T PTZ00466 260 YRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPE 339 (380)
T ss_pred hcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 016004 393 YSHP 396 (397)
Q Consensus 393 ~~~~ 396 (397)
|.+.
T Consensus 340 r~~~ 343 (380)
T PTZ00466 340 RKFS 343 (380)
T ss_pred Ccee
Confidence 8774
No 3
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.9e-69 Score=533.95 Aligned_cols=324 Identities=31% Similarity=0.584 Sum_probs=294.8
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC--------CcccCCcccccccccccccceeeCcccCCcccCHH
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSD 73 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d 73 (397)
.++||||+||+++|+||||++.|++++||++++++.. .++++|+++. .. ...+.+++|+++|.|.|||
T Consensus 6 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~--~~--~~~~~l~~Pi~~G~i~dwd 81 (376)
T PTZ00281 6 VQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQ--SK--RGILTLKYPIEHGIVTNWD 81 (376)
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhh--cc--ccCcEEeccCcCCEEcCHH
Confidence 4689999999999999999999999999999986543 2456788766 22 3457899999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceE
Q 016004 74 LQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCS 153 (397)
Q Consensus 74 ~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tg 153 (397)
.+|.+|+|+|.+.|+++|+++||+|+|++++++..|++++|++||.|++|++++++++++++| ++| ++||
T Consensus 82 ~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~y------a~g----~~tg 151 (376)
T PTZ00281 82 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY------ASG----RTTG 151 (376)
T ss_pred HHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHH------hcC----CceE
Confidence 999999999988999999999999999999999999999999999999999999999999999 999 8999
Q ss_pred EEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCC--ChHHHHHHHHHhcCccccCHHHHHHHH
Q 016004 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQIA 231 (397)
Q Consensus 154 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~~~v~~d~~~~~~~~ 231 (397)
||||+|++.|+|+||+||+++.+++.++++||++++++|+++|..+++++. .+.++++++||++|||+.|+..+++..
T Consensus 152 lVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~ 231 (376)
T PTZ00281 152 IVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTA 231 (376)
T ss_pred EEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhh
Confidence 999999999999999999999999999999999999999999998877653 345789999999999999988776543
Q ss_pred HhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEeccc
Q 016004 232 RKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNE 311 (397)
Q Consensus 232 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~e 311 (397)
. ......+.|.|||++ .|.++.|
T Consensus 232 ~---~~~~~~~~y~LPdg~------------------------------------------------------~i~i~~e 254 (376)
T PTZ00281 232 A---SSSALEKSYELPDGQ------------------------------------------------------VITIGNE 254 (376)
T ss_pred h---cCcccceeEECCCCC------------------------------------------------------EEEeeHH
Confidence 2 122345679999887 7999999
Q ss_pred ccccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCC
Q 016004 312 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE 391 (397)
Q Consensus 312 r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~ 391 (397)
||.+||+||+|+.++.+..+|+++|.++|.+||+|.|+.||+|||||||+|++|||.+||++||+.++|...+++|++++
T Consensus 255 r~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~ 334 (376)
T PTZ00281 255 RFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPP 334 (376)
T ss_pred HeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred CCCCC
Q 016004 392 EYSHP 396 (397)
Q Consensus 392 ~~~~~ 396 (397)
+|.+.
T Consensus 335 ~r~~~ 339 (376)
T PTZ00281 335 ERKYS 339 (376)
T ss_pred CCcee
Confidence 98775
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=4.3e-69 Score=515.46 Aligned_cols=318 Identities=36% Similarity=0.644 Sum_probs=289.0
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC--------CcccCCcccccccccccccceeeCcccCCcccCH
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINS 72 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~ 72 (397)
|..+||+|+||..+|+||||++.|+.+|||.+++++.. ++.++|+++. ... .+++|+++|+|.||
T Consensus 6 ~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~--~~~-----~l~~Pie~Giv~~w 78 (372)
T KOG0676|consen 6 DIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAE--SKR-----TLKYPIERGIVTDW 78 (372)
T ss_pred CcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhh--ccc-----cccCccccccccch
Confidence 45799999999999999999999999999999986532 3566788887 222 67999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCce
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQC 152 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~t 152 (397)
|.++.+|.|+|.+.|++.|+++||+|+|++++|+..||++++++||.|++|++|+..++++ | |+| ++|
T Consensus 79 d~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--y------a~g----~tt 146 (372)
T KOG0676|consen 79 DDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--Y------ASG----RTT 146 (372)
T ss_pred HHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--H------HcC----Cee
Confidence 9999999999999999999999999999999999999999999999999999999776666 7 999 999
Q ss_pred EEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCC--ChHHHHHHHHHhcCccccCHHHHHHH
Q 016004 153 SLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQI 230 (397)
Q Consensus 153 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~~~v~~d~~~~~~~ 230 (397)
|+|||+|++.|+++||++|+++++++.++++||+++++|++..|.++++.+. .+.++++++||++||++.|+++++..
T Consensus 147 G~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~ 226 (372)
T KOG0676|consen 147 GLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEET 226 (372)
T ss_pred EEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhc
Confidence 9999999999999999999999999999999999999999999988776654 45688999999999999999988765
Q ss_pred HHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecc
Q 016004 231 ARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTN 310 (397)
Q Consensus 231 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~ 310 (397)
.. ........|++||+. .|.+++
T Consensus 227 -~~--~~~~l~~~y~lPDg~------------------------------------------------------~i~i~~ 249 (372)
T KOG0676|consen 227 -AN--TSSSLESSYELPDGQ------------------------------------------------------KITIGN 249 (372)
T ss_pred -cc--ccccccccccCCCCC------------------------------------------------------EEecCC
Confidence 11 223344557888877 799999
Q ss_pred cccccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecC
Q 016004 311 ERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQ 390 (397)
Q Consensus 311 er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~ 390 (397)
|||.+||+||+|+.+|.+..+|++++.++|.+||+|+|++||+||||+||++++|||.+||++||+.+.|..++++|+++
T Consensus 250 erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~p 329 (372)
T KOG0676|consen 250 ERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAP 329 (372)
T ss_pred cccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 016004 391 EEYS 394 (397)
Q Consensus 391 ~~~~ 394 (397)
+++.
T Consensus 330 p~r~ 333 (372)
T KOG0676|consen 330 PERK 333 (372)
T ss_pred cccc
Confidence 8875
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=2e-67 Score=520.21 Aligned_cols=325 Identities=29% Similarity=0.567 Sum_probs=294.4
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCC--------CCcccCCcccccccccccccceeeCcccCCcccCHH
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS--------SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSD 73 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~--------~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d 73 (397)
.++||||+||+++|+||||++.|++++||++++++. .+.+++|+++. .. .....+++|+++|.|.|||
T Consensus 6 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~--~~--~~~~~l~~Pi~~G~i~d~d 81 (378)
T PTZ00004 6 TNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQ--DK--RGILTLKYPIEHGIVTNWD 81 (378)
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhh--cc--cccceEcccCcCCEEcCHH
Confidence 478999999999999999999999999999998764 23566788866 22 2347899999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceE
Q 016004 74 LQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCS 153 (397)
Q Consensus 74 ~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tg 153 (397)
.+|.+|+|+|.+.|++++.++||++++++++++..|++++|+|||+|++|++++.+++++++| ++| .+||
T Consensus 82 ~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~y------a~g----~~tg 151 (378)
T PTZ00004 82 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLY------ASG----RTTG 151 (378)
T ss_pred HHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHH------hcC----CceE
Confidence 999999999988899999999999999999999999999999999999999999999999999 998 8999
Q ss_pred EEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCC--hHHHHHHHHHhcCccccCHHHHHHHH
Q 016004 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMD--ETFIIDDVKEKLCFVSLDVARDLQIA 231 (397)
Q Consensus 154 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~--~~~~~~~iKe~~~~v~~d~~~~~~~~ 231 (397)
||||+|++.|+|+||+||+++.+++.++++||++++++|.++|+.+++.+.. +..+++++||++||++.|+.+++...
T Consensus 152 lVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~ 231 (378)
T PTZ00004 152 IVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNS 231 (378)
T ss_pred EEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhh
Confidence 9999999999999999999999999999999999999999999988775533 45789999999999999998876542
Q ss_pred HhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEeccc
Q 016004 232 RKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNE 311 (397)
Q Consensus 232 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~e 311 (397)
.. ..+...+.|.||||. .+.++.|
T Consensus 232 ~~--~~~~~~~~y~lPdg~------------------------------------------------------~i~l~~e 255 (378)
T PTZ00004 232 AG--SSDKYEESYELPDGT------------------------------------------------------IITVGSE 255 (378)
T ss_pred hc--CccccceEEECCCCC------------------------------------------------------EEEEcHH
Confidence 21 112235679999987 7899999
Q ss_pred ccccccccccCCCCCCC-CCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecC
Q 016004 312 RFLVPEMIFQPADLGMN-QAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQ 390 (397)
Q Consensus 312 r~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~ 390 (397)
||.+||+||+|+.++.+ ..+|+++|.++|.+||+|+|+.|++||+||||+|++|||.+||++||++++|...+++|.++
T Consensus 256 r~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~ 335 (378)
T PTZ00004 256 RFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAP 335 (378)
T ss_pred HeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecC
Confidence 99999999999998887 89999999999999999999999999999999999999999999999999999889999999
Q ss_pred CCCCCC
Q 016004 391 EEYSHP 396 (397)
Q Consensus 391 ~~~~~~ 396 (397)
++|.|.
T Consensus 336 ~~~~~~ 341 (378)
T PTZ00004 336 PERKYS 341 (378)
T ss_pred CCCcee
Confidence 998875
No 6
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=4.5e-67 Score=465.14 Aligned_cols=323 Identities=30% Similarity=0.559 Sum_probs=294.0
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC----------CcccCCcccccccccccccceeeCcccCCcccC
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS----------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLIN 71 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~----------~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~ 71 (397)
.++||.|+|+.++|+||||+..|.++|||.+++|--. ++..+|+++. .. +.-+++.+|+++|+|.|
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeas--el--Rs~L~i~YPmeNGivrn 79 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEAS--EL--RSLLDINYPMENGIVRN 79 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHH--HH--HHHHhcCCccccccccC
Confidence 3799999999999999999999999999999987421 4567888876 22 23468899999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCc
Q 016004 72 SDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQ 151 (397)
Q Consensus 72 ~d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~ 151 (397)
||.++.+|+|.|.+.|+++|++++++|+|||++|...|++++|++||++++.++|+..++++++| |-| ..
T Consensus 80 wddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLY------AQG----L~ 149 (389)
T KOG0677|consen 80 WDDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLY------AQG----LL 149 (389)
T ss_pred hHHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHH------Hhc----cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 888 99
Q ss_pred eEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCC--ChHHHHHHHHHhcCccccCHHHHHH
Q 016004 152 CSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQ 229 (397)
Q Consensus 152 tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~~~v~~d~~~~~~ 229 (397)
||+|||+|.+.|+|+||++|+.+++-..+++++|++++.||.++|.+++|.+. .+.++++.+||++||++.|++.+.+
T Consensus 150 tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~k 229 (389)
T KOG0677|consen 150 TGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQK 229 (389)
T ss_pred ceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhH
Confidence 99999999999999999999999999999999999999999999999998764 5668899999999999999887744
Q ss_pred HHHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEec
Q 016004 230 IARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLT 309 (397)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~ 309 (397)
-+. .+....+.|+||||. .|.++
T Consensus 230 Lal---ETTvLv~~YtLPDGR------------------------------------------------------vIkvG 252 (389)
T KOG0677|consen 230 LAL---ETTVLVESYTLPDGR------------------------------------------------------VIKVG 252 (389)
T ss_pred hhh---hheeeeeeeecCCCc------------------------------------------------------EEEec
Confidence 333 234567789999998 89999
Q ss_pred ccccccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCC---------
Q 016004 310 NERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVP--------- 380 (397)
Q Consensus 310 ~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p--------- 380 (397)
.|||.+||+||+|.+++.+.+|+++++.++|+..|+|.|.++|++|+|+||+++.||+-.||++||++++-
T Consensus 253 ~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~ 332 (389)
T KOG0677|consen 253 GERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTD 332 (389)
T ss_pred ceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988741
Q ss_pred --CCccEEEecCCCCCC
Q 016004 381 --DDYQVKITTQEEYSH 395 (397)
Q Consensus 381 --~~~~~~v~~~~~~~~ 395 (397)
..++++|-+|+.+-|
T Consensus 333 ~l~KfkiRIEdPPrRKh 349 (389)
T KOG0677|consen 333 KLKKFKIRIEDPPRRKH 349 (389)
T ss_pred hhhheEEeccCCCccce
Confidence 236788888888876
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=9.4e-65 Score=507.05 Aligned_cols=330 Identities=29% Similarity=0.487 Sum_probs=287.2
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC-----------CcccCCcccccccccccccceeeCcccCCccc
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS-----------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLI 70 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~-----------~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~ 70 (397)
.++||||+||+++|+||||++.|++++||++++++.. .++++|+++. .. ...+.+++|+++|.|.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~--~~--~~~~~l~~Pi~~G~I~ 79 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEAL--AA--SKSYTLTYPMKHGIVE 79 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhh--hC--cCCcEEecCccCCEeC
Confidence 4789999999999999999999999999999986442 1467898877 33 2458899999999999
Q ss_pred CHHHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCC------
Q 016004 71 NSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPY------ 144 (397)
Q Consensus 71 ~~d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~------ 144 (397)
|||.+|.+|+|+|.+.|+++|.++|+++++++++++..|++++|++||+|++|++++..+++|++| |+
T Consensus 80 dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lsly------a~~~~~~~ 153 (414)
T PTZ00280 80 DWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALR------ASWTSKKA 153 (414)
T ss_pred CHHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHh------hhcccccc
Confidence 999999999999988999999999999999999999999999999999999999999999999999 77
Q ss_pred ----CCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCC--hHHHHHHHHHhcC
Q 016004 145 ----GLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMD--ETFIIDDVKEKLC 218 (397)
Q Consensus 145 ----g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~--~~~~~~~iKe~~~ 218 (397)
| ..||||||+|++.|+|+||++|+++.+++.++++||++++++|.++|++++.++.. ...+++++||++|
T Consensus 154 ~~~~g----~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c 229 (414)
T PTZ00280 154 KELGG----TLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYC 229 (414)
T ss_pred cccCC----ceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Confidence 6 89999999999999999999999999999999999999999999999988876654 3578999999999
Q ss_pred ccccCHHHHHHHHHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhc
Q 016004 219 FVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKR 298 (397)
Q Consensus 219 ~v~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (397)
|++.|+.+++...... .......|.+||..+
T Consensus 230 ~v~~d~~~e~~~~~~~--~~~~~~~~~~~d~~~----------------------------------------------- 260 (414)
T PTZ00280 230 YVAPDIAKEFEKYDSD--PKNHFKKYTAVNSVT----------------------------------------------- 260 (414)
T ss_pred cccCcHHHHHHHhhcC--cccccceEECCCCCC-----------------------------------------------
Confidence 9999988776543211 111234566665431
Q ss_pred ccCCccEEEecccccccccccccCCCCCCC-CCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccc
Q 016004 299 ADLAKNEFDLTNERFLVPEMIFQPADLGMN-QAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRP 377 (397)
Q Consensus 299 ~~~~~~~i~i~~er~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~ 377 (397)
+.++.+.++.|||.+||+||+|+.++.. ..+|+++|.++|++||+|+|++||+||||+||+|++|||.+||++||++
T Consensus 261 --g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 261 --KKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred --CCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 1123789999999999999999987655 4599999999999999999999999999999999999999999999999
Q ss_pred cC----------------CCCccEEEecCCCCCCC
Q 016004 378 LV----------------PDDYQVKITTQEEYSHP 396 (397)
Q Consensus 378 ~~----------------p~~~~~~v~~~~~~~~~ 396 (397)
++ |.+++++|++++++.+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~ 373 (414)
T PTZ00280 339 RVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYA 373 (414)
T ss_pred hccccccccccccccccCCCCceEEEecCCcccee
Confidence 86 44678999998877653
No 8
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=2e-63 Score=463.72 Aligned_cols=322 Identities=24% Similarity=0.419 Sum_probs=265.3
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceee-------CCCCcccCCcccccccccccccceeeCcccCCcccCHHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRP-------LSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQ 75 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~-------~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~ 75 (397)
++||||+||+++|+||||++.|+.+|||+++.. ...+++++++++. ...+...++.+|+++|.|.|||.+
T Consensus 12 ~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai---~~pr~gmEv~~~i~nGlv~dWD~~ 88 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAI---HVPRPGMEVKTPIKNGLVEDWDLF 88 (426)
T ss_pred ceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhc---cCCCCCCeeccchhcCCcccHHHH
Confidence 689999999999999999999999999999942 1234567888877 344567899999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEE
Q 016004 76 RDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLV 155 (397)
Q Consensus 76 e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglV 155 (397)
+.+|+|+|++.|+++|.++|+|++||+||+++.|++++|++||+|++|++|+++.++|++| |.| +.||||
T Consensus 89 ~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AF------A~G----rstalV 158 (426)
T KOG0679|consen 89 EMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAF------ANG----RSTALV 158 (426)
T ss_pred HHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHH------hcC----CCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999 999 999999
Q ss_pred EecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHH-------------------HHHHHh
Q 016004 156 VDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFII-------------------DDVKEK 216 (397)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~-------------------~~iKe~ 216 (397)
||||++.|+|+||+||+++.+++++.++||++|+..++++|..+++++.+-+.++ +++++.
T Consensus 159 vDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes 238 (426)
T KOG0679|consen 159 VDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTES 238 (426)
T ss_pred EEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHH
Confidence 9999999999999999999999999999999999999999999887765422221 222222
Q ss_pred cCcccc-----CHHHHHHHHHhc-----CCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccch
Q 016004 217 LCFVSL-----DVARDLQIARKR-----GKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDR 286 (397)
Q Consensus 217 ~~~v~~-----d~~~~~~~~~~~-----~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 286 (397)
.|+... ++++++...... .......+.|++|
T Consensus 239 ~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP--------------------------------------- 279 (426)
T KOG0679|consen 239 YHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFP--------------------------------------- 279 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCC---------------------------------------
Confidence 222111 111111000000 0000111222222
Q ss_pred hhHHHHhhhhhcccCCccEEEecccccccccccccCCCCC------------CCCCChHHHHHHHHHhcChhhHHHhhcc
Q 016004 287 TEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLG------------MNQAGLAECIVRAVNSCHPYLHSVLYES 354 (397)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E~lF~p~~~~------------~~~~~l~~~I~~~i~~~~~d~r~~l~~n 354 (397)
+++..+++.|||++||.||.|+.+. ....|+++++..+|..||.|+|..|++|
T Consensus 280 ---------------~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~n 344 (426)
T KOG0679|consen 280 ---------------DGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGN 344 (426)
T ss_pred ---------------CCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhcc
Confidence 3457888999999999999999752 2346899999999999999999999999
Q ss_pred EEEecCccCCCChHHHHHhhccccCCCCccEEEecCCC
Q 016004 355 IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 392 (397)
Q Consensus 355 IvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~ 392 (397)
||||||+|+|+||.+||.+||..++|.+ |++|+++..
T Consensus 345 VivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~ 381 (426)
T KOG0679|consen 345 VIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGH 381 (426)
T ss_pred EEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCc
Confidence 9999999999999999999999999987 999998764
No 9
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.7e-61 Score=478.22 Aligned_cols=326 Identities=37% Similarity=0.642 Sum_probs=292.9
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCC-------cccCCcccccccccccccceeeCcccCCcccCHHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSK-------KFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQ 75 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~ 75 (397)
++||||+||++||+||+|++.|++++||++++++..+ .+++|+++. ... ....+++|+++|.|.||+.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~--~~~--~~~~~~~P~~~G~i~d~~~~ 77 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQ--EKR--GGLELKYPIEHGIVENWDDM 77 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhh--hcC--CCceecCCCcCCEEeCHHHH
Confidence 5899999999999999999999999999999876543 457798876 332 23479999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEE
Q 016004 76 RDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLV 155 (397)
Q Consensus 76 e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglV 155 (397)
+.+|+|+|.+.|+++++++|++|++|.++++..|+++++++||.|++|++++++++++++| ++| ..||+|
T Consensus 78 e~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~------~~g----~~~~lV 147 (373)
T smart00268 78 EKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLY------ASG----RTTGLV 147 (373)
T ss_pred HHHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHH------hCC----CCEEEE
Confidence 9999999998899999999999999999999999999999999999999999999999999 998 999999
Q ss_pred EecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcC--CCCCChHHHHHHHHHhcCccccCHHHHHHHHHh
Q 016004 156 VDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRA--INVMDETFIIDDVKEKLCFVSLDVARDLQIARK 233 (397)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~--~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~ 233 (397)
||+|++.|+|+||+||+++.+++.++++||++++++|.++|++++ ++...+..+++++|+++||++.++.+++.....
T Consensus 148 VDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~ 227 (373)
T smart00268 148 IDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARE 227 (373)
T ss_pred EecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhh
Confidence 999999999999999999999999999999999999999998853 444445678999999999999998887665442
Q ss_pred cCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEeccccc
Q 016004 234 RGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERF 313 (397)
Q Consensus 234 ~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~ 313 (397)
..........|.+||+. .+.++.||+
T Consensus 228 ~~~~~~~~~~~~lpdg~------------------------------------------------------~~~~~~er~ 253 (373)
T smart00268 228 SSESSKLEKTYELPDGN------------------------------------------------------TIKVGNERF 253 (373)
T ss_pred cccccccceeEECCCCC------------------------------------------------------EEEEChHHe
Confidence 21123345678888887 788899999
Q ss_pred ccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCC
Q 016004 314 LVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEY 393 (397)
Q Consensus 314 ~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~ 393 (397)
.+||+||+|+.++.+..+|+++|.++|++||+|+|++|++||+||||+|++|||.+||++||..++|...+++|..+++|
T Consensus 254 ~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~ 333 (373)
T smart00268 254 RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPER 333 (373)
T ss_pred eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCC
Confidence 99999999999888889999999999999999999999999999999999999999999999999998889999999998
Q ss_pred CCC
Q 016004 394 SHP 396 (397)
Q Consensus 394 ~~~ 396 (397)
++.
T Consensus 334 ~~~ 336 (373)
T smart00268 334 KYS 336 (373)
T ss_pred ccc
Confidence 875
No 10
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=4.9e-62 Score=485.39 Aligned_cols=323 Identities=36% Similarity=0.637 Sum_probs=278.7
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCC---cccCCcccccccccccccceeeCcccCCcccCHHHHHHH
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSK---KFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDI 78 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~---~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~l 78 (397)
+++||||+||++||+||||++.|+.++||+++++...+ ++++|+++. . +.....+.+|+++|.+.||+.++.+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~--~--~~~~~~~~~p~~~g~i~~~~~~e~i 79 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEAL--S--PRSNLELRSPIENGVIVDWDALEEI 79 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHH--H--TGTGEEEEESEETTEESSHHHHHHH
T ss_pred CCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccc--c--chhheeeeeeccccccccccccccc
Confidence 58999999999999999999999999999999887665 677888854 2 3456789999999999999999999
Q ss_pred HHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEec
Q 016004 79 WAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDC 158 (397)
Q Consensus 79 l~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDi 158 (397)
|+|+|.+.|+++++++||||++|+++++..|+++++++||+|++|++++++++++++| ++| ..||||||+
T Consensus 80 ~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~------~~g----~~tglVVD~ 149 (393)
T PF00022_consen 80 WDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALY------ASG----RTTGLVVDI 149 (393)
T ss_dssp HHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHH------HTT----BSSEEEEEE
T ss_pred cccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccc------ccc----ccccccccc
Confidence 9999998899999999999999999999999999999999999999999999999999 999 999999999
Q ss_pred CCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCC-------------------CChHHHHHHHHHhcCc
Q 016004 159 GFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINV-------------------MDETFIIDDVKEKLCF 219 (397)
Q Consensus 159 G~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~-------------------~~~~~~~~~iKe~~~~ 219 (397)
|++.|+|+||+||+++.+++.++++||++++++|+++|+.+++.. ..+..+++++|++.|+
T Consensus 150 G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~ 229 (393)
T PF00022_consen 150 GYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCY 229 (393)
T ss_dssp SSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHS
T ss_pred ceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhh
Confidence 999999999999999999999999999999999999999874332 1234678999999999
Q ss_pred cccCHHHHHHHHHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcc
Q 016004 220 VSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRA 299 (397)
Q Consensus 220 v~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (397)
++.+........ ........|.+||+.
T Consensus 230 v~~~~~~~~~~~----~~~~~~~~~~lPdg~------------------------------------------------- 256 (393)
T PF00022_consen 230 VSEDPDEEQEEQ----ASENPEKSYELPDGQ------------------------------------------------- 256 (393)
T ss_dssp GGSSHHHHHHHH----HCSTTTEEEE-TTSS-------------------------------------------------
T ss_pred cccccccccccc----cccccceeccccccc-------------------------------------------------
Confidence 999887511111 123456778999887
Q ss_pred cCCccEEEecccccccccccccCCCCCCCCC-------ChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHH
Q 016004 300 DLAKNEFDLTNERFLVPEMIFQPADLGMNQA-------GLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLE 372 (397)
Q Consensus 300 ~~~~~~i~i~~er~~~~E~lF~p~~~~~~~~-------~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~ 372 (397)
.+.++.||+.+||+||+|+..+.... +|+++|.++|++||+|.|+.|++||+||||+|++|||.+||+
T Consensus 257 -----~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~ 331 (393)
T PF00022_consen 257 -----TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQ 331 (393)
T ss_dssp -----EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHH
T ss_pred -----ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHH
Confidence 78999999999999999998877665 999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCccEEEecCC-CCCCC
Q 016004 373 RELRPLVPDDYQVKITTQE-EYSHP 396 (397)
Q Consensus 373 ~eL~~~~p~~~~~~v~~~~-~~~~~ 396 (397)
+||..+.|...+++|++++ +|.|.
T Consensus 332 ~eL~~~~~~~~~~~v~~~~~~~~~~ 356 (393)
T PF00022_consen 332 QELRSLLPSSTKVKVIAPPSDRQFA 356 (393)
T ss_dssp HHHHHHSGTTSTEEEE--T-TTTSH
T ss_pred HHhhhhhhccccceeccCchhhhhc
Confidence 9999999999999999999 88774
No 11
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=2e-61 Score=440.42 Aligned_cols=356 Identities=37% Similarity=0.677 Sum_probs=315.4
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCCc-ccCCcccccccccccccceeeCcccCCcccCHHHHHHHHH
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKK-FIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~ 80 (397)
.++||+|+|++++|+|+++...| +.+|+|+.+.+.+++ .++|.+.. .++|...+.++.|+++|.++||+...++|+
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p-~~vpNcl~kaK~~~rr~f~~nei~--ec~D~ssL~y~rp~erGyLvnW~tq~~vWD 79 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKP-FVVPNCLAKAKFGRRRSFLANEID--ECKDISSLFYRRPHERGYLVNWDTQSQVWD 79 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCc-eeccchhhhcccccchhhhhhhhh--hccCccceEEeehhhcceeEeehhHHHHHH
Confidence 37899999999999999999998 567999998876654 67799888 799999999999999999999999999999
Q ss_pred HHhhccc-CCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhh-ccccCCCCCCCCCceEEEEec
Q 016004 81 HLFSSLL-HISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLY-EASRRPYGLLSETQCSLVVDC 158 (397)
Q Consensus 81 ~~~~~~l-~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~-~~~~~a~g~~~~~~tglVVDi 158 (397)
++|.+.. .++..++.+++++|.++-++..+.+.|++||.|++.+++=...+.++++. +...+.....+..-.+||||+
T Consensus 80 y~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDs 159 (400)
T KOG0680|consen 80 YCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDS 159 (400)
T ss_pred HHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeC
Confidence 9998543 35568899999999999999999999999999999999999999999995 221111100112336899999
Q ss_pred CCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcCCCC
Q 016004 159 GFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDN 238 (397)
Q Consensus 159 G~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~ 238 (397)
|++.|+|+||+.|.+..+++.++++||+.||++|++.+..++++++.++.++.++||.+|||++|+.++|+.+..+.+.+
T Consensus 160 GysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~ 239 (400)
T KOG0680|consen 160 GYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQEN 239 (400)
T ss_pred CCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776666
Q ss_pred cceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecccccccccc
Q 016004 239 LLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEM 318 (397)
Q Consensus 239 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E~ 318 (397)
.....|+|||..+.+.|+++.. ++..+ .+...|.+++|||.+||+
T Consensus 240 ~~~i~YvLPDF~T~k~Gyvr~~---------~vk~~--------------------------~d~qii~L~nErF~IPEi 284 (400)
T KOG0680|consen 240 KVMIDYVLPDFSTSKRGYVRNE---------DVKLP--------------------------EDEQIITLTNERFTIPEI 284 (400)
T ss_pred eeEEEEecCCcccccceeEecC---------CCCCC--------------------------CCcceeeecccccccchh
Confidence 7788999999999999999841 00000 112289999999999999
Q ss_pred cccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCCCC
Q 016004 319 IFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEYSH 395 (397)
Q Consensus 319 lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 395 (397)
||+|+.++..++||+++|.++|..||.+.|+.|+.||+++||++++|||.+||.+||+.++|.++.++|..+.||.-
T Consensus 285 lF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~ 361 (400)
T KOG0680|consen 285 LFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPIT 361 (400)
T ss_pred hcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999874
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.7e-59 Score=463.58 Aligned_cols=324 Identities=41% Similarity=0.694 Sum_probs=290.7
Q ss_pred eEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC--------CcccCCcccccccccccccceeeCcccCCcccCHHHH
Q 016004 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQ 75 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~ 75 (397)
+||||+||+++|+||+|++.|++++||++++++.. +.+++|+++. ...+. ...+++|+++|.+.||+.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~--~~~~~-~~~~~~P~~~G~i~d~~~~ 77 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEAL--EKRGL-GLELIYPIEHGIVVDWDDM 77 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhh--hCCCC-ceEEcccccCCEEeCHHHH
Confidence 68999999999999999999999999999987543 5678899887 44433 5789999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEE
Q 016004 76 RDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLV 155 (397)
Q Consensus 76 e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglV 155 (397)
+.+|+|+|.+.+..+++++|++|++|+++++..|+++++++||.+++|++++++++++++| ++| ..||+|
T Consensus 78 e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~------~~g----~~~~lV 147 (371)
T cd00012 78 EKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLY------ASG----RTTGLV 147 (371)
T ss_pred HHHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHH------hcC----CCeEEE
Confidence 9999999998888889999999999999999999999999999999999999999999999 998 899999
Q ss_pred EecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCC--CCCChHHHHHHHHHhcCccccCHHHHHHHHHh
Q 016004 156 VDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAI--NVMDETFIIDDVKEKLCFVSLDVARDLQIARK 233 (397)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~--~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~ 233 (397)
||+|++.|+|+||+||+++.+++.++++||++++++|.++|+.+++ +.......++++||++||++.++.++......
T Consensus 148 VDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~ 227 (371)
T cd00012 148 VDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAK 227 (371)
T ss_pred EECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999998876 33445678999999999999988776532111
Q ss_pred cCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEeccccc
Q 016004 234 RGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERF 313 (397)
Q Consensus 234 ~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~ 313 (397)
........|.+||+. .+.++.|||
T Consensus 228 --~~~~~~~~~~lpd~~------------------------------------------------------~i~~~~er~ 251 (371)
T cd00012 228 --ETSLLEKTYELPDGR------------------------------------------------------TIKVGNERF 251 (371)
T ss_pred --cCCccceeEECCCCe------------------------------------------------------EEEEChHHh
Confidence 122335567888776 788999999
Q ss_pred ccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCC--CccEEEecCC
Q 016004 314 LVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPD--DYQVKITTQE 391 (397)
Q Consensus 314 ~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~--~~~~~v~~~~ 391 (397)
.+||+||+|+.++....+|+++|.++|++||.|.|+.+++||+||||+|++|||.+||++||..++|. ...+++..+.
T Consensus 252 ~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~ 331 (371)
T cd00012 252 RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPP 331 (371)
T ss_pred hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCC
Confidence 99999999998888889999999999999999999999999999999999999999999999999997 6678888888
Q ss_pred CCCCC
Q 016004 392 EYSHP 396 (397)
Q Consensus 392 ~~~~~ 396 (397)
+|.+.
T Consensus 332 ~~~~~ 336 (371)
T cd00012 332 ERKYS 336 (371)
T ss_pred Ccccc
Confidence 88775
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.3e-56 Score=442.55 Aligned_cols=341 Identities=33% Similarity=0.550 Sum_probs=286.8
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeC---------CCCcccCCcccccccccccccceeeCcccCCcccCHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPL---------SSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSD 73 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d 73 (397)
++||||+||+.+|+||+|++.|+++||+++++.+ ..+..++|+++. ...+.....+++|+++|.|.||+
T Consensus 7 ~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~--~~~~~~~~~~~~p~~~g~i~~W~ 84 (444)
T COG5277 7 PTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQ--NDRDNSLLELRYPIENGIILNWD 84 (444)
T ss_pred CeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhh--hccCCccceeecccccCccCCcH
Confidence 3499999999999999999999999999999874 134456788877 44444578999999999999999
Q ss_pred HHHHHHHHHhhc--ccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCc
Q 016004 74 LQRDIWAHLFSS--LLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQ 151 (397)
Q Consensus 74 ~~e~ll~~~~~~--~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~ 151 (397)
.++++|+|+|.+ .+...+.++|++|+||++++++.|+++++++||.|++|++++..+++|++| +.| ..
T Consensus 85 ~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~y------a~g----~~ 154 (444)
T COG5277 85 AMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLY------ASG----SS 154 (444)
T ss_pred HHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHH------hcC----CC
Confidence 999999999998 688889999999999999999999999999999999999999999999999 988 77
Q ss_pred --eEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHh-----cCCCCCCh-----HHHHHHHHHhcC-
Q 016004 152 --CSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSY-----RAINVMDE-----TFIIDDVKEKLC- 218 (397)
Q Consensus 152 --tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~-----~~~~~~~~-----~~~~~~iKe~~~- 218 (397)
+|+|||+|++.|+|+||+||..+.+++.++++||++++.+|.++|.. +++.+..+ .++++.+|++.|
T Consensus 155 ~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~ 234 (444)
T COG5277 155 DETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCE 234 (444)
T ss_pred CCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999998 56666554 788999999999
Q ss_pred ------ccccCHHHHHHHHHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHH
Q 016004 219 ------FVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEE 292 (397)
Q Consensus 219 ------~v~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
|+..+..+..+.+.......... .... .++...
T Consensus 235 ~~~~~~y~~~~~~~~~~e~~~~~~~~~~~-----~~~~------------~~~~~~------------------------ 273 (444)
T COG5277 235 TDDESAYVSLDAEEEFEEEEEKPAEKSTE-----STFQ------------LSKETS------------------------ 273 (444)
T ss_pred ccccccchhhcchHHHHHHhhhhhhhccc-----cccc------------ccchhc------------------------
Confidence 88888777665533211100000 0000 000000
Q ss_pred hhhhhcccCCccEEEeccc-ccccccccccCC--CCCCCCCC---------------------------hHHHHHHHHHh
Q 016004 293 ARDRKRADLAKNEFDLTNE-RFLVPEMIFQPA--DLGMNQAG---------------------------LAECIVRAVNS 342 (397)
Q Consensus 293 l~~~~~~~~~~~~i~i~~e-r~~~~E~lF~p~--~~~~~~~~---------------------------l~~~I~~~i~~ 342 (397)
.....+...++..+.++.| ||.+||.+|+|. ..+.+..+ |++++.++|..
T Consensus 274 ~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~ 353 (444)
T COG5277 274 IAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQI 353 (444)
T ss_pred cccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHHh
Confidence 0000111134568999999 999999999999 76655555 99999999999
Q ss_pred cChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCCCCC
Q 016004 343 CHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEYSHP 396 (397)
Q Consensus 343 ~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~~ 396 (397)
||.|.|+.|++||+||||++++|||.+||++||+.+.|....+.|..+++|.+.
T Consensus 354 ~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~ 407 (444)
T COG5277 354 CDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLD 407 (444)
T ss_pred ccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhc
Confidence 999999999999999999999999999999999999999899999999999875
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=1e-51 Score=398.79 Aligned_cols=383 Identities=22% Similarity=0.325 Sum_probs=288.0
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCC----cccCCcccccccccccccceeeCcccCCcccCHHHHHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSK----KFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDI 78 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~----~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~l 78 (397)
.+||||+||+.+||||+|+.+|+++|++++.++++.+ ..++|++.. .........++||+++.|+||+.+|.+
T Consensus 24 ~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s~t~vgnd~~---~~~~~Rs~~rSPFd~nVvtNwel~E~i 100 (645)
T KOG0681|consen 24 IPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGASVTLVGNDIL---NFQGVRSSPRSPFDRNVVTNWELMEQI 100 (645)
T ss_pred CcEEEeCCceeEeecccCCCCccchhhhhhccccccccccccccccchhh---hhhhhhccCCCCCcCCccccHHHHHHH
Confidence 5899999999999999999999999999999887543 235676655 122234567899999999999999999
Q ss_pred HHHHhhcccCCCC--CCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEE
Q 016004 79 WAHLFSSLLHISP--SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVV 156 (397)
Q Consensus 79 l~~~~~~~l~~~~--~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVV 156 (397)
|+|+|. .|+++. -+|||+|||+.++|...|++|+++|||+||+|+|.+..+++.|+||+.. .++ ..+|+||
T Consensus 101 lDY~F~-~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~--~~~----~~~~lii 173 (645)
T KOG0681|consen 101 LDYIFG-KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYG--KSS----NKSGLII 173 (645)
T ss_pred HHHHHH-hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccC--ccc----CcceEEE
Confidence 999997 689988 4799999999999999999999999999999999999999999997543 333 5599999
Q ss_pred ecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCC--ChHHHHHHHHHhcCccccCHHHHHHHHHhc
Q 016004 157 DCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQIARKR 234 (397)
Q Consensus 157 DiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~ 234 (397)
++|+++|+|+||.||.++...++++++||.+...||.+||+.+++.+. .....++.++..+||++.||.+++..+.+.
T Consensus 174 s~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~ 253 (645)
T KOG0681|consen 174 SMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEM 253 (645)
T ss_pred ecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999875543 235679999999999999999987765443
Q ss_pred CCCCcceeEEec-------------------------------------------------------------CC-----
Q 016004 235 GKDNLLRCTYVL-------------------------------------------------------------PD----- 248 (397)
Q Consensus 235 ~~~~~~~~~~~l-------------------------------------------------------------~d----- 248 (397)
+.-.....-+.+ +|
T Consensus 254 d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~ 333 (645)
T KOG0681|consen 254 DYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKF 333 (645)
T ss_pred hhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhc
Confidence 100000000000 00
Q ss_pred ------------Cc------------------------------------ccccccccCcc-------hhh---------
Q 016004 249 ------------GV------------------------------------THTKGFVKDPD-------AAQ--------- 264 (397)
Q Consensus 249 ------------~~------------------------------------~~~~~~~~~~~-------~~~--------- 264 (397)
+. ++..+++.+.. +..
T Consensus 334 ~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e 413 (645)
T KOG0681|consen 334 PLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQE 413 (645)
T ss_pred hhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 00000000000 000
Q ss_pred -----------hhcc---cCC-----CCCCCCCccc-----------cccchh-----hHHHHhhhh-------hccc--
Q 016004 265 -----------RYLS---LSD-----GSRSQPSETV-----------KDMDRT-----EVMEEARDR-------KRAD-- 300 (397)
Q Consensus 265 -----------~~~~---l~~-----~~~~~~~~~~-----------~~~~~~-----~~~~~l~~~-------~~~~-- 300 (397)
.+.. |.. ..+.++..|. ++.++. +....|... ..+.
T Consensus 414 ~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~ 493 (645)
T KOG0681|consen 414 LKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVE 493 (645)
T ss_pred hhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccc
Confidence 0000 000 0111121222 000000 001111100 0000
Q ss_pred --------------CCccEEEecccccccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCC
Q 016004 301 --------------LAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPR 366 (397)
Q Consensus 301 --------------~~~~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G 366 (397)
...+++.++-||+++||++|+|+++|.+++||.+++..++.+.|-|.+..|.+||+||||+|++||
T Consensus 494 ~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pG 573 (645)
T KOG0681|consen 494 GTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPG 573 (645)
T ss_pred cccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcC
Confidence 014677889999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccccCCCCccEEEecCCCCCC
Q 016004 367 FAERLERELRPLVPDDYQVKITTQEEYSH 395 (397)
Q Consensus 367 ~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 395 (397)
|++||..||..+.|..+++.|..++||..
T Consensus 574 mkeRi~kElt~mrP~gS~i~V~rasdP~L 602 (645)
T KOG0681|consen 574 MKERIKKELTSMRPVGSSINVVRASDPVL 602 (645)
T ss_pred HHHHHHHHhheecccCCceEEEecCCcch
Confidence 99999999999999999999999999963
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=3e-48 Score=354.65 Aligned_cols=319 Identities=27% Similarity=0.447 Sum_probs=264.0
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCC----------------CCcccCCcccccccccccccceeeCcccC
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS----------------SKKFIHPSPTAASATEDLTSAAVRRPIDR 66 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~----------------~~~~~~G~~~~~~~~~~~~~~~~~~p~~~ 66 (397)
.++|+|+|+.++|.||||...|++++|++++.... +-++++|++++ . .+...+.+|+++
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal--~---~~~ysl~ypiRh 79 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEAL--D---ATTYSLKYPIRH 79 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHH--h---hcccccccceec
Confidence 34999999999999999999999999999985322 12577899988 3 346789999999
Q ss_pred CcccCHHHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCC
Q 016004 67 GYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGL 146 (397)
Q Consensus 67 g~i~~~d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~ 146 (397)
|.+.|||.+|++|...+.++|+.+|+++-.||+||++++.+.|++++|++||.|++|++|++.++++|+...-. +..+
T Consensus 80 g~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswt--s~~v 157 (415)
T KOG0678|consen 80 GQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWT--SRQV 157 (415)
T ss_pred cccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHH--Hhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998881100 1112
Q ss_pred CCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCCh--HHHHHHHHHhcCccccCH
Q 016004 147 LSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDE--TFIIDDVKEKLCFVSLDV 224 (397)
Q Consensus 147 ~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~--~~~~~~iKe~~~~v~~d~ 224 (397)
....-||+|||.|.+.|+|+||.+||++.++++.++++|++++..++++|+.++..+..+ .+.++.+||++||++.|.
T Consensus 158 ~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdi 237 (415)
T KOG0678|consen 158 GERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDI 237 (415)
T ss_pred hhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHH
Confidence 234669999999999999999999999999999999999999999999999888776654 377999999999999998
Q ss_pred HHHHHHHHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCcc
Q 016004 225 ARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKN 304 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (397)
..+..++-.. +..+.+.|.--+. + ....+
T Consensus 238 vkef~k~d~e--p~K~ikq~~~~~~-------------------------------------------i------~~~~~ 266 (415)
T KOG0678|consen 238 VKEFAKYDRE--PAKWIKQYTGINV-------------------------------------------I------TGKKF 266 (415)
T ss_pred HHHHHHhccC--HHHHHHHHhccch-------------------------------------------h------cCCce
Confidence 8876543210 0001110000000 0 01123
Q ss_pred EEEecccccccccccccCCCCCCC-CCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccC
Q 016004 305 EFDLTNERFLVPEMIFQPADLGMN-QAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLV 379 (397)
Q Consensus 305 ~i~i~~er~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~ 379 (397)
.++++-|||..||++|+|.....+ ...|++++..+|+.||+|.|+-||+||++.||.+++.+|..|++++++.+.
T Consensus 267 ~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~v 342 (415)
T KOG0678|consen 267 VVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLV 342 (415)
T ss_pred eecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHH
Confidence 688899999999999999976544 457899999999999999999999999999999999999999999887653
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.7e-36 Score=292.51 Aligned_cols=294 Identities=16% Similarity=0.163 Sum_probs=227.3
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCC-CCcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHH
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~ 80 (397)
+..++||+||.++|+|++|++ +.+.+||+++.... ++.+++|+++............+++|+++|.|.||+.++.+|+
T Consensus 8 ~~~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~ 86 (335)
T PRK13930 8 SKDIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLR 86 (335)
T ss_pred ccceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHH
Confidence 345999999999999999876 46778999998753 3456789998722112234578899999999999999999999
Q ss_pred HHhhcccCCCC-CCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCC-CceEEEEec
Q 016004 81 HLFSSLLHISP-SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSE-TQCSLVVDC 158 (397)
Q Consensus 81 ~~~~~~l~~~~-~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~-~~tglVVDi 158 (397)
|+|.+.+...+ ...+++++.|...+...|+.+.+ +||.++++.++++++|++|++ ++|.... ..+++|||+
T Consensus 87 ~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~------a~g~~~~~~~~~lVvDi 159 (335)
T PRK13930 87 YFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAI------GAGLPVTEPVGNMVVDI 159 (335)
T ss_pred HHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHH------hcCCCcCCCCceEEEEe
Confidence 99976555333 36789999999988888877666 789999999999999999999 7773211 246799999
Q ss_pred CCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcCCCC
Q 016004 159 GFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDN 238 (397)
Q Consensus 159 G~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~ 238 (397)
|++.|++++|.+|.++.. ...++||.++|++|.+++..+ ++.......++++|+++|++..+....
T Consensus 160 G~gttdvs~v~~g~~~~~--~~~~lGG~~id~~l~~~l~~~-~~~~~~~~~ae~~K~~~~~~~~~~~~~----------- 225 (335)
T PRK13930 160 GGGTTEVAVISLGGIVYS--ESIRVAGDEMDEAIVQYVRRK-YNLLIGERTAEEIKIEIGSAYPLDEEE----------- 225 (335)
T ss_pred CCCeEEEEEEEeCCEEee--cCcCchhHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHhhcCcCCCCCc-----------
Confidence 999999999999998764 457999999999999998765 333334467999999999987652211
Q ss_pred cceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecccccccccc
Q 016004 239 LLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEM 318 (397)
Q Consensus 239 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E~ 318 (397)
.......+... .....+.++.+++ .|+
T Consensus 226 --~~~~~~~~~~~-------------------------------------------------~~~~~~~i~~~~~--~e~ 252 (335)
T PRK13930 226 --SMEVRGRDLVT-------------------------------------------------GLPKTIEISSEEV--REA 252 (335)
T ss_pred --eEEEECccCCC-------------------------------------------------CCCeeEEECHHHH--HHH
Confidence 00000000000 0001466666665 388
Q ss_pred cccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhcc-EEEecCccCCCChHHHHHhhcc
Q 016004 319 IFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYES-IILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 319 lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-IvltGG~s~i~G~~~RL~~eL~ 376 (397)
+|.+. ..+.+.|.++|++|+.+.+.+++.| |+||||+|++|||.+||++++.
T Consensus 253 i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~ 305 (335)
T PRK13930 253 LAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG 305 (335)
T ss_pred HHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC
Confidence 88764 3799999999999999999999998 9999999999999999999984
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.8e-35 Score=286.89 Aligned_cols=292 Identities=15% Similarity=0.181 Sum_probs=224.2
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC-CcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHH
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS-KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~ 80 (397)
++.|+||+||.++|+|++|++. .+.+||+++.++.. +.+++|+++......+.....+.+|+++|.|.||+.++.+|.
T Consensus 5 ~~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~ 83 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLK 83 (334)
T ss_pred cceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHH
Confidence 4679999999999999999877 67899999998663 446789998732222335677889999999999999999999
Q ss_pred HHhhcccCCCCCCCe-EEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCC-CceEEEEec
Q 016004 81 HLFSSLLHISPSASS-LLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSE-TQCSLVVDC 158 (397)
Q Consensus 81 ~~~~~~l~~~~~~~p-vll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~-~~tglVVDi 158 (397)
+++.+.++. +.++| ++++.| .+....++++++.+||.++++.++++++|+++++ ++|.... ..+++|||+
T Consensus 84 ~~~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~------~~g~~~~~~~~~lvvDi 155 (334)
T PRK13927 84 YFIKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAI------GAGLPVTEPTGSMVVDI 155 (334)
T ss_pred HHHHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHH------HcCCcccCCCeEEEEEe
Confidence 999877766 55564 555555 5666677788999999999999999999999999 7773222 244699999
Q ss_pred CCCceEEEee-eCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcCCC
Q 016004 159 GFSFTHAAPV-FQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKD 237 (397)
Q Consensus 159 G~~~t~v~pV-~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~ 237 (397)
|++.|+++++ ++|+...+. .++||.++|++|.+++.++ +++......++++|+++|++..+...
T Consensus 156 Gggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~-~~~~~~~~~ae~iK~~~~~~~~~~~~----------- 220 (334)
T PRK13927 156 GGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRN-YNLLIGERTAERIKIEIGSAYPGDEV----------- 220 (334)
T ss_pred CCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHH-hCcCcCHHHHHHHHHHhhccCCCCCC-----------
Confidence 9999999999 788776654 4799999999999988743 33334456799999999988643110
Q ss_pred CcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEeccccccccc
Q 016004 238 NLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPE 317 (397)
Q Consensus 238 ~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E 317 (397)
..+.+.... ... .....+.++.+++. |
T Consensus 221 ----~~~~~~~~~-~~~----------------------------------------------~~~~~~~i~~~~~~--e 247 (334)
T PRK13927 221 ----LEMEVRGRD-LVT----------------------------------------------GLPKTITISSNEIR--E 247 (334)
T ss_pred ----ceEEEeCcc-cCC----------------------------------------------CCCeEEEECHHHHH--H
Confidence 011110000 000 00115677777664 8
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhcc-EEEecCccCCCChHHHHHhhcc
Q 016004 318 MIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYES-IILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 318 ~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-IvltGG~s~i~G~~~RL~~eL~ 376 (397)
++|.|. ..|.+.|.++|++|+.+.+++++++ |+||||+|++|||.+||++++.
T Consensus 248 ~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~ 301 (334)
T PRK13927 248 ALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG 301 (334)
T ss_pred HHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC
Confidence 888764 3799999999999999999999985 9999999999999999999983
No 18
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.1e-32 Score=268.51 Aligned_cols=292 Identities=16% Similarity=0.184 Sum_probs=219.4
Q ss_pred eEEEECCCccEEEEEeCCCCCCeeeeccceeeCC-----CCcccCCcccccccccccccceeeCcccCCcccCHHHHHHH
Q 016004 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-----SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDI 78 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~-----~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~l 78 (397)
-+-||+||.++++-..++. -.+..||+++.... ++.+.+|+++............+++|+++|.|.||+.++.+
T Consensus 4 ~~giDlGt~~s~i~~~~~~-~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~ 82 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRG-IVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKM 82 (333)
T ss_pred eeEEecCcceEEEEECCCC-EEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHH
Confidence 4889999999999654433 35667999987744 23467899988321133356788999999999999999999
Q ss_pred HHHHhhcccCCCCCC-CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCC-CCCceEEEE
Q 016004 79 WAHLFSSLLHISPSA-SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL-SETQCSLVV 156 (397)
Q Consensus 79 l~~~~~~~l~~~~~~-~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~-~~~~tglVV 156 (397)
|+|++.+.++..... .+++++.|.+.+...|+. ++.+||.++++.++++++|++|+| ++|.. ....+++||
T Consensus 83 ~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~------~~g~~~~~~~~~lVv 155 (333)
T TIGR00904 83 IKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAI------GAGLPVEEPTGSMVV 155 (333)
T ss_pred HHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHH------hcCCcccCCceEEEE
Confidence 999998766533222 379999999999998887 666899999999999999999999 77621 123578999
Q ss_pred ecCCCceEEEee-eCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcC
Q 016004 157 DCGFSFTHAAPV-FQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRG 235 (397)
Q Consensus 157 DiG~~~t~v~pV-~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~ 235 (397)
|+|++.|++++| ++|...... .++||+++|+.|.+++..+ ++.......++++|+++|++..+..++..
T Consensus 156 DiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~-~~~~~~~~~ae~lK~~l~~~~~~~~~~~~------ 225 (333)
T TIGR00904 156 DIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRT-YNLLIGEQTAERIKIEIGSAYPLNDEPRK------ 225 (333)
T ss_pred EcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHH-hcccCCHHHHHHHHHHHhccccccccccc------
Confidence 999999999999 888776654 4799999999999988754 33334456799999999988654211100
Q ss_pred CCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEeccccccc
Q 016004 236 KDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLV 315 (397)
Q Consensus 236 ~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~ 315 (397)
..+...+.. +.+ ...+.++.+ .+
T Consensus 226 ------~~~~~~~~~----------------------------------------~~~---------~~~~~i~~~--~~ 248 (333)
T TIGR00904 226 ------MEVRGRDLV----------------------------------------TGL---------PRTIEITSV--EV 248 (333)
T ss_pred ------eeecCcccc----------------------------------------CCC---------CeEEEECHH--HH
Confidence 000000000 000 013445433 57
Q ss_pred ccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhc-cEEEecCccCCCChHHHHHhhcc
Q 016004 316 PEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYE-SIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 316 ~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
.|++|+|. ..+.+.|.+++++|+.+.+.++++ +|+||||+|++|||.+||++++.
T Consensus 249 ~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~ 304 (333)
T TIGR00904 249 REALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETG 304 (333)
T ss_pred HHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHC
Confidence 78998874 379999999999999999999997 79999999999999999999993
No 19
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.5e-32 Score=267.30 Aligned_cols=290 Identities=17% Similarity=0.259 Sum_probs=222.6
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCCc-ccCCcccccccccccccceeeCcccCCcccCHHHHHHHHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKK-FIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAH 81 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~~ 81 (397)
..+-||+||.++++--.++.. ....||+++.....++ +.+|++|.........+..+.+|+++|.|.|||..+.+|+|
T Consensus 5 ~~~giDlGt~~~~i~~~~~~~-~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~l~~ 83 (335)
T PRK13929 5 TEIGIDLGTANILVYSKNKGI-ILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDLLKQ 83 (335)
T ss_pred CeEEEEcccccEEEEECCCcE-EecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHHHHH
Confidence 358899999999983333322 3456999988755443 56899988432233456788899999999999999999999
Q ss_pred Hhhc---ccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCC-CCceEEEEe
Q 016004 82 LFSS---LLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVD 157 (397)
Q Consensus 82 ~~~~---~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~-~~~tglVVD 157 (397)
++.+ .++..+...+++++.|++.+...|+++.+ +||.+|++.++++.+|++|++ ++|+.. ...+++|||
T Consensus 84 ~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~------~~g~~~~~~~~~lvvD 156 (335)
T PRK13929 84 IMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAI------GADLPVDEPVANVVVD 156 (335)
T ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHH------hcCCCcCCCceEEEEE
Confidence 9974 45666666799999999999999999999 889999999999999999999 766332 245789999
Q ss_pred cCCCceEEEee-eCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcCC
Q 016004 158 CGFSFTHAAPV-FQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGK 236 (397)
Q Consensus 158 iG~~~t~v~pV-~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~ 236 (397)
+|++.|+++++ ++|..... ..++||+++|++|.+.+..+ +++......++++|+++|++..+...+
T Consensus 157 iG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~-~~~~~~~~~AE~iK~~l~~~~~~~~~~--------- 223 (335)
T PRK13929 157 IGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKK-YNLLIGERTAEQVKMEIGYALIEHEPE--------- 223 (335)
T ss_pred eCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHH-hCcCcCHHHHHHHHHHHcCCCCCCCCc---------
Confidence 99999999999 55554433 36799999999999998753 344444567999999999986542111
Q ss_pred CCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecccccc--
Q 016004 237 DNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFL-- 314 (397)
Q Consensus 237 ~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~-- 314 (397)
.+... +..... .-...+.++.+++.
T Consensus 224 ------~~~v~-g~~~~~----------------------------------------------~~p~~i~i~~~~~~~~ 250 (335)
T PRK13929 224 ------TMEVR-GRDLVT----------------------------------------------GLPKTITLESKEIQGA 250 (335)
T ss_pred ------eEEEe-CCccCC----------------------------------------------CCCeEEEEcHHHHHHH
Confidence 01110 000000 00126777777665
Q ss_pred cccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhc-cEEEecCccCCCChHHHHHhhcc
Q 016004 315 VPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYE-SIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 315 ~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
++|.+|+ |.+.|.++|++|+++.+.++++ +|+||||+|++|||.+||++++.
T Consensus 251 i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~ 303 (335)
T PRK13929 251 MRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIV 303 (335)
T ss_pred HHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHC
Confidence 5777764 8999999999999999999998 69999999999999999999994
No 20
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=1.5e-30 Score=249.08 Aligned_cols=303 Identities=16% Similarity=0.186 Sum_probs=218.1
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCCcc-cCCcccccccccccccceeeCcccCCcccCHHHHHHHHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKF-IHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAH 81 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~~ 81 (397)
+.+-||+||.+|++...++. =.+..||+++.+...++. .+|+++.+...+....+.+.+|+++|.|.|++..+.+|.|
T Consensus 2 ~~igIDLGT~~t~i~~~~~G-iv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l~~ 80 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG-IVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEMLRY 80 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE-EEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHH
T ss_pred CceEEecCcccEEEEECCCC-EEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHHHHH
Confidence 56889999999999444443 357789999988775554 4799988332333467899999999999999999999999
Q ss_pred HhhcccCCC-CCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceE-EEEecC
Q 016004 82 LFSSLLHIS-PSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCS-LVVDCG 159 (397)
Q Consensus 82 ~~~~~l~~~-~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tg-lVVDiG 159 (397)
++++.++.. .....++++.|.-.+.-.|+.+.+.+ ...++..+++++.|+++++ +.|+......| +|||+|
T Consensus 81 ~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAi------GaGl~i~~~~g~miVDIG 153 (326)
T PF06723_consen 81 FLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAI------GAGLDIFEPRGSMIVDIG 153 (326)
T ss_dssp HHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHH------HTT--TTSSS-EEEEEE-
T ss_pred HHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHh------cCCCCCCCCCceEEEEEC
Confidence 999887653 45567888899999998999888888 4689999999999999999 88866555544 999999
Q ss_pred CCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcCCCCc
Q 016004 160 FSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNL 239 (397)
Q Consensus 160 ~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~~ 239 (397)
++.|.++-+..|-.+.+ ..+.+||.++++.+.+.+++++ ++.....+++++|++++++....++.
T Consensus 154 ~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~ir~~y-~l~Ig~~tAE~iK~~~g~~~~~~~~~------------ 218 (326)
T PF06723_consen 154 GGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKY-NLLIGERTAEKIKIEIGSASPPEEEE------------ 218 (326)
T ss_dssp SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHH-SEE--HHHHHHHHHHH-BSS--HHHH------------
T ss_pred CCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhh-CcccCHHHHHHHHHhcceeeccCCCc------------
Confidence 99999999999988775 5578999999999999998775 66677788999999999887543221
Q ss_pred ceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecc-cccccccc
Q 016004 240 LRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTN-ERFLVPEM 318 (397)
Q Consensus 240 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~-er~~~~E~ 318 (397)
.+... |.....|. ...+.++. +-..+.+.
T Consensus 219 ---~~~v~-Grd~~tGl----------------------------------------------P~~~~i~~~ev~~ai~~ 248 (326)
T PF06723_consen 219 ---SMEVR-GRDLITGL----------------------------------------------PKSIEITSSEVREAIEP 248 (326)
T ss_dssp ---EEEEE-EEETTTTC----------------------------------------------EEEEEEEHHHHHHHHHH
T ss_pred ---eEEEE-CccccCCC----------------------------------------------cEEEEEcHHHHHHHHHH
Confidence 11110 11000010 11566664 44444444
Q ss_pred cccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhcc-EEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCCCC
Q 016004 319 IFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYES-IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEYSH 395 (397)
Q Consensus 319 lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-IvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 395 (397)
.++ .|.++|.++|+++|+++..+++.| |+||||+|+++||.++|++++ .++|+.+++|.+
T Consensus 249 ~~~---------~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~--------~~pV~va~~P~~ 309 (326)
T PF06723_consen 249 PVD---------QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET--------GVPVRVADDPLT 309 (326)
T ss_dssp HHH---------HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH--------SS-EEE-SSTTT
T ss_pred HHH---------HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH--------CCCEEEcCCHHH
Confidence 443 589999999999999999999987 999999999999999999999 478888888865
No 21
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=99.96 E-value=9.7e-28 Score=231.27 Aligned_cols=323 Identities=18% Similarity=0.183 Sum_probs=213.1
Q ss_pred ccceeeCcccCCcccC----------HHHHHHHHHHHhhcccCCCC---CCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 56 TSAAVRRPIDRGYLIN----------SDLQRDIWAHLFSSLLHISP---SASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 56 ~~~~~~~p~~~g~i~~----------~d~~e~ll~~~~~~~l~~~~---~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+.+.+||++|...- ...+.++|+|++...|++.+ .++.+||+.|-...+.+.+.+..++|-++++
T Consensus 177 ~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F 256 (618)
T KOG0797|consen 177 SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGF 256 (618)
T ss_pred CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhcc
Confidence 3567889999997743 35788999999998998876 4689999999888888888899999999999
Q ss_pred ceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCC
Q 016004 123 KSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAIN 202 (397)
Q Consensus 123 p~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~ 202 (397)
.++.++..+++++| +.| .++++|||||+..|+|++|-||..++++..++++||.|+++.|..+|++.++.
T Consensus 257 ~~~~v~QESlaatf------GaG----lss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FP 326 (618)
T KOG0797|consen 257 NSAVVHQESLAATF------GAG----LSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFP 326 (618)
T ss_pred ceEEEEhhhhHHHh------cCC----ccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCC
Confidence 99999999999999 999 88999999999999999999999999999999999999999999999988764
Q ss_pred C-------CChHHHHHHHHHhcCccccCHHHHHHHHHhcCCCCcceeEEecCCCcccccccccCcch-hhhhcccCCCCC
Q 016004 203 V-------MDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDA-AQRYLSLSDGSR 274 (397)
Q Consensus 203 ~-------~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~-~~~~~~l~~~~~ 274 (397)
. ..++.+++++||++|.+....-.........+..+.....|+..-+.+-. -.|.. +.+. .+.. +
T Consensus 327 y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~m----lAPlaLF~P~-lf~~--~ 399 (618)
T KOG0797|consen 327 YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVM----LAPLALFYPN-LFVI--E 399 (618)
T ss_pred cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhh----ccchhhhhhh-hhhc--c
Confidence 3 24678899999999998754333222222223333333333322111000 00000 0000 0000 0
Q ss_pred CCCCcccc--cc-chhhHH---HHhhhhhcccCC--c-------cEEEecc-cccccccccccCC---------------
Q 016004 275 SQPSETVK--DM-DRTEVM---EEARDRKRADLA--K-------NEFDLTN-ERFLVPEMIFQPA--------------- 323 (397)
Q Consensus 275 ~~~~~~~~--~~-~~~~~~---~~l~~~~~~~~~--~-------~~i~i~~-er~~~~E~lF~p~--------------- 323 (397)
.+..-.+. .+ .+...+ +-++++.+++.. + ..+.+.+ -|-..||..-.+.
T Consensus 400 ~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s 479 (618)
T KOG0797|consen 400 GTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKS 479 (618)
T ss_pred ccccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhh
Confidence 00000000 01 122222 113444444310 0 0111110 0111222222211
Q ss_pred ---------CCC-----CCCC----ChHHHHHHHHHhc-ChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCC---
Q 016004 324 ---------DLG-----MNQA----GLAECIVRAVNSC-HPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPD--- 381 (397)
Q Consensus 324 ---------~~~-----~~~~----~l~~~I~~~i~~~-~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~--- 381 (397)
+.+ ..+. .|.+.|..+|..| ..|.++.|+++|.++||..++||+.+-|+..+.+..|+
T Consensus 480 ~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~ 559 (618)
T KOG0797|consen 480 IVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGRE 559 (618)
T ss_pred hhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCcccc
Confidence 000 1112 3446688888887 56899999999999999999999999999999887775
Q ss_pred -CccEEEecCCCCCC
Q 016004 382 -DYQVKITTQEEYSH 395 (397)
Q Consensus 382 -~~~~~v~~~~~~~~ 395 (397)
-..|.|+.++.-|.
T Consensus 560 ~I~~VsVip~prdMd 574 (618)
T KOG0797|consen 560 AIDTVSVIPPPRDMD 574 (618)
T ss_pred ccCceeecCCCcCCC
Confidence 24588888874443
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.96 E-value=1e-28 Score=240.85 Aligned_cols=292 Identities=15% Similarity=0.189 Sum_probs=213.8
Q ss_pred eEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC-CcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHHHH
Q 016004 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS-KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHL 82 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~~~ 82 (397)
.+-||+|+.++++...++. -.+..||+++..... +-+.+|+++............+.+|+++|.|.||+.++.+|+|+
T Consensus 5 ~~gIDlGt~~~~i~~~~~~-~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~~~ 83 (336)
T PRK13928 5 DIGIDLGTANVLVYVKGKG-IVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLKYF 83 (336)
T ss_pred eeEEEcccccEEEEECCCC-EEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHHHH
Confidence 4889999999999666443 345679998877543 34468999873211223567788999999999999999999999
Q ss_pred hhcccCCCCCCCe-EEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCC-CCCceEEEEecCC
Q 016004 83 FSSLLHISPSASS-LLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL-SETQCSLVVDCGF 160 (397)
Q Consensus 83 ~~~~l~~~~~~~p-vll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~-~~~~tglVVDiG~ 160 (397)
+.+.....+..+| ++++.|.. ....+++.++.+|+.++++.++++++|++|++ ++|.. ....+++|||+|+
T Consensus 84 ~~~~~~~~~~~~p~~vitvP~~-~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~------~~g~~~~~~~~~lVvDiGg 156 (336)
T PRK13928 84 INKACGKRFFSKPRIMICIPTG-ITSVEKRAVREAAEQAGAKKVYLIEEPLAAAI------GAGLDISQPSGNMVVDIGG 156 (336)
T ss_pred HHHHhccCCCCCCeEEEEeCCC-CCHHHHHHHHHHHHHcCCCceEecccHHHHHH------HcCCcccCCCeEEEEEeCC
Confidence 9654333345667 88888555 45567778888899999999999999999999 76632 1235679999999
Q ss_pred CceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcCCCCcc
Q 016004 161 SFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLL 240 (397)
Q Consensus 161 ~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~~~ 240 (397)
+.|++++|..|..+... ..++||+++|+.|.+.+..+ +++......++++|+++|++..+..
T Consensus 157 gttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~-~~~~~~~~~ae~lK~~~~~~~~~~~--------------- 218 (336)
T PRK13928 157 GTTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKK-YKLLIGERTAEEIKIKIGTAFPGAR--------------- 218 (336)
T ss_pred CeEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHH-hchhcCHHHHHHHHHHhcccccccC---------------
Confidence 99999999999776543 57999999999999988743 3333344569999999887754311
Q ss_pred eeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecccccccccccc
Q 016004 241 RCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIF 320 (397)
Q Consensus 241 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E~lF 320 (397)
.....+. +..... .....+.++.+++. |+++
T Consensus 219 ~~~~~v~-g~~~~~----------------------------------------------~~~~~~~i~~~~~~--eii~ 249 (336)
T PRK13928 219 EEEMEIR-GRDLVT----------------------------------------------GLPKTITVTSEEIR--EALK 249 (336)
T ss_pred CcEEEEe-cccccC----------------------------------------------CCceEEEECHHHHH--HHHH
Confidence 0011110 000000 00114566666554 6665
Q ss_pred cCCCCCCCCCChHHHHHHHHHhcChhhHHHhhc-cEEEecCccCCCChHHHHHhhcc
Q 016004 321 QPADLGMNQAGLAECIVRAVNSCHPYLHSVLYE-SIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 321 ~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~-nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
.+. ..+.+.|.+++++++.+.++++++ +|+||||+|++||+.++|++++.
T Consensus 250 ~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~ 300 (336)
T PRK13928 250 EPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETK 300 (336)
T ss_pred HHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHC
Confidence 542 368999999999999999999998 79999999999999999999994
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.90 E-value=8.5e-23 Score=189.35 Aligned_cols=305 Identities=16% Similarity=0.202 Sum_probs=224.2
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeC--CCCc-ccCCcccccccccccccceeeCcccCCcccCHHHHHHH
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPL--SSKK-FIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDI 78 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~--~~~~-~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~l 78 (397)
++.+-||+|+.+|++-.- +..--...||+++... +.+. ..+|+++...-.+...++....|+++|.|.|++..|.+
T Consensus 6 s~diGIDLGTanTlV~~k-~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~m 84 (342)
T COG1077 6 SNDIGIDLGTANTLVYVK-GKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELM 84 (342)
T ss_pred cccceeeecccceEEEEc-CceEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHH
Confidence 357889999999999444 3333566799998776 3343 34799988322233467888999999999999999999
Q ss_pred HHHHhhcccCCCC--CCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCce-EEE
Q 016004 79 WAHLFSSLLHISP--SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQC-SLV 155 (397)
Q Consensus 79 l~~~~~~~l~~~~--~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~t-glV 155 (397)
+.|..++..+-.. ..-.++++.|...+.-.|+.+-|.+ ++-+...|++++.|.+|++ +.|+.....+ ++|
T Consensus 85 l~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAI------Gaglpi~ep~G~mv 157 (342)
T COG1077 85 LKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAI------GAGLPIMEPTGSMV 157 (342)
T ss_pred HHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHh------cCCCcccCCCCCEE
Confidence 9999986553332 3335677777777776777666666 7888999999999999999 8887766777 599
Q ss_pred EecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcC
Q 016004 156 VDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRG 235 (397)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~ 235 (397)
||||.+.|.|.-+..|-..... ...+||+.+++.+...++++ +++......++++|.+..++..+...+..
T Consensus 158 vDIGgGTTevaVISlggiv~~~--Sirv~GD~~De~Ii~yvr~~-~nl~IGe~taE~iK~eiG~a~~~~~~~~~------ 228 (342)
T COG1077 158 VDIGGGTTEVAVISLGGIVSSS--SVRVGGDKMDEAIIVYVRKK-YNLLIGERTAEKIKIEIGSAYPEEEDEEL------ 228 (342)
T ss_pred EEeCCCceeEEEEEecCEEEEe--eEEEecchhhHHHHHHHHHH-hCeeecHHHHHHHHHHhcccccccCCccc------
Confidence 9999999999998877776654 35699999999999999854 66666667799999999988764221100
Q ss_pred CCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEeccccccc
Q 016004 236 KDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLV 315 (397)
Q Consensus 236 ~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~ 315 (397)
+.+.. |.....|. ...+.+..+ .+
T Consensus 229 -------~~eV~-Grdl~~Gl----------------------------------------------Pk~i~i~s~--ev 252 (342)
T COG1077 229 -------EMEVR-GRDLVTGL----------------------------------------------PKTITINSE--EI 252 (342)
T ss_pred -------eeeEE-eeecccCC----------------------------------------------CeeEEEcHH--HH
Confidence 00000 00000011 115555544 23
Q ss_pred ccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhcc-EEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCC
Q 016004 316 PEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYES-IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEY 393 (397)
Q Consensus 316 ~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~n-IvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~ 393 (397)
.|+|-.+- ..|.++|..++.+||+++-.+++.+ |++|||.|++.||++.|.+|. .+.|+-+++|
T Consensus 253 ~eal~~~v------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et--------~~pv~ia~~p 317 (342)
T COG1077 253 AEALEEPL------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET--------GVPVIIADDP 317 (342)
T ss_pred HHHHHHHH------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc--------CCeEEECCCh
Confidence 34443332 2689999999999999999999999 999999999999999999987 5677777766
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.65 E-value=7.4e-15 Score=136.20 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=106.0
Q ss_pred eCcccCCcccCHHHHHHHHHHHhhcc-cCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhcc
Q 016004 61 RRPIDRGYLINSDLQRDIWAHLFSSL-LHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEA 139 (397)
Q Consensus 61 ~~p~~~g~i~~~d~~e~ll~~~~~~~-l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~ 139 (397)
..|+.+|.|.|++..+.+|+++.+.. -.....-..++++.|.+.....|+.+.+.+ +..|+.-+.+..+|++++.
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~--- 103 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAA--- 103 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHH---
Confidence 35899999999999999999998521 012223468899999888877777666544 7789999999999999998
Q ss_pred ccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhc
Q 016004 140 SRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKL 217 (397)
Q Consensus 140 ~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~ 217 (397)
+++ ....+|||+|++.|.++-+.+|.++.. ...++||+++++.+.+.+. .+...++++|.+.
T Consensus 104 ---~~~----~~~~~vvDiGggtt~i~i~~~G~i~~~--~~~~~GG~~it~~Ia~~~~-------i~~~~AE~~K~~~ 165 (239)
T TIGR02529 104 ---VLQ----IKNGAVVDVGGGTTGISILKKGKVIYS--ADEPTGGTHMSLVLAGAYG-------ISFEEAEEYKRGH 165 (239)
T ss_pred ---Hhc----CCCcEEEEeCCCcEEEEEEECCeEEEE--EeeecchHHHHHHHHHHhC-------CCHHHHHHHHHhc
Confidence 666 445699999999999999999987763 4578999999998876553 2234577777654
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.52 E-value=9.9e-13 Score=124.06 Aligned_cols=165 Identities=17% Similarity=0.040 Sum_probs=117.3
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCCcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHL 82 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~~~ 82 (397)
-.++||+||..+|+=.+ +..+. . + |.. ...+.+++.|.|.|++.....++++
T Consensus 25 ~~~~iDiGSssi~~vv~-~~~~~-~----~-----------~~~-----------~~~~~~vr~G~i~di~~a~~~i~~~ 76 (267)
T PRK15080 25 LKVGVDLGTANIVLAVL-DEDGQ-P----V-----------AGA-----------LEWADVVRDGIVVDFIGAVTIVRRL 76 (267)
T ss_pred EEEEEEccCceEEEEEE-cCCCC-E----E-----------EEE-----------eccccccCCCEEeeHHHHHHHHHHH
Confidence 35899999999997443 32222 1 1 111 1133578999999999999999888
Q ss_pred hhc---ccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecC
Q 016004 83 FSS---LLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCG 159 (397)
Q Consensus 83 ~~~---~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG 159 (397)
... .++.+ -..++++.|.......|..+. -+.+..|+.-..++.++.+++. +.+ ...++|||+|
T Consensus 77 ~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~------~~~----~~~~~vvDIG 143 (267)
T PRK15080 77 KATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAA------VLG----IDNGAVVDIG 143 (267)
T ss_pred HHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHH------HhC----CCCcEEEEeC
Confidence 762 23333 245666777777666666665 5568889988889999998888 655 3457999999
Q ss_pred CCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhc
Q 016004 160 FSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKL 217 (397)
Q Consensus 160 ~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~ 217 (397)
.+.|.++-+.+|.+... ...++||.++|+.+.+.+. .+...++++|.+.
T Consensus 144 ggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~-------i~~~eAE~lK~~~ 192 (267)
T PRK15080 144 GGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG-------ISFEEAEQYKRDP 192 (267)
T ss_pred CCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC-------CCHHHHHHHHhcc
Confidence 99999999999988765 4579999999999886653 1234466666653
No 26
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.32 E-value=7.8e-11 Score=124.42 Aligned_cols=188 Identities=18% Similarity=0.176 Sum_probs=113.4
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCCee--------eeccceeeCCCCcccCCcccccccccc-------------cc---
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATED-------------LT--- 56 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~G~~~~~~~~~~-------------~~--- 56 (397)
|..+|-||+|+.++.+++..+..|.++ +||+++.... .+.++|+.+......+ ..
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 79 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKS-GDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDD 79 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCC-CCEEEcHHHHHhhhhCcccchHHHHHHhCCCccc
Confidence 678899999999999999765555433 5788876432 2344565543100000 00
Q ss_pred --cceeeCcc-----cC--------CcccCH-HHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHHhh
Q 016004 57 --SAAVRRPI-----DR--------GYLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVF 117 (397)
Q Consensus 57 --~~~~~~p~-----~~--------g~i~~~-d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lF 117 (397)
...-.+|+ .+ |..... +....+|.++.. ..++. .-..++++.|.+.+...|+.+.+. .
T Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~A-a 156 (653)
T PRK13411 80 TEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGE--PVTQAVITVPAYFTDAQRQATKDA-G 156 (653)
T ss_pred hhHHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCcHHHHHHHHH-H
Confidence 00000111 11 111122 222233444332 23322 235689999999999999977665 4
Q ss_pred hhcCCceeeeecccccchhhccccCCCCCC--CCCceEEEEecCCCceEEEeee--Ccee-cccccEEeeccHHHHHHHH
Q 016004 118 EDFNFKSLFVADPPSLVHLYEASRRPYGLL--SETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYL 192 (397)
Q Consensus 118 E~~~vp~v~~~~~~~la~~~~~~~~a~g~~--~~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~gG~~l~~~l 192 (397)
+..|+.-+.+++.|.+|++ ++|+. ....+-+|+|+|.+.++|+-+- +|.. +........+||.++|+.|
T Consensus 157 ~~AGl~v~~li~EPtAAAl------~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAAL------AYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHcCCCeEEEecchHHHHH------HhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 7889999999999999999 55421 1244579999999999887553 2322 1122223579999999998
Q ss_pred HHHHHh
Q 016004 193 KELVSY 198 (397)
Q Consensus 193 ~~ll~~ 198 (397)
.+.+..
T Consensus 231 ~~~l~~ 236 (653)
T PRK13411 231 VDWLVE 236 (653)
T ss_pred HHHHHH
Confidence 877754
No 27
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.32 E-value=1e-10 Score=123.56 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=75.1
Q ss_pred CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCC-CCceEEEEecCCCceEEEeee--C
Q 016004 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--Q 170 (397)
Q Consensus 94 ~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~--d 170 (397)
..++++.|.+.+...|+.+.+. .+..|+.-+.++..|.+|++ ++|... ...+-+|+|+|++.++|+-+. +
T Consensus 175 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl------ay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~ 247 (663)
T PTZ00400 175 KQAVITVPAYFNDSQRQATKDA-GKIAGLDVLRIINEPTAAAL------AFGMDKNDGKTIAVYDLGGGTFDISILEILG 247 (663)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeCchHHHHH------HhccccCCCcEEEEEeCCCCeEEEEEEEecC
Confidence 5789999999999998877654 47889999999999999999 555221 234679999999999988664 5
Q ss_pred ceec-ccccEEeeccHHHHHHHHHHHHHh
Q 016004 171 NFTV-NYAVKRIDLGGKALTNYLKELVSY 198 (397)
Q Consensus 171 G~~~-~~~~~~~~~gG~~l~~~l~~ll~~ 198 (397)
|... ........+||.++|+.|.+.+..
T Consensus 248 g~~~v~a~~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 248 GVFEVKATNGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred CeeEEEecccCCCcCHHHHHHHHHHHHHH
Confidence 5432 222234589999999999887754
No 28
>CHL00094 dnaK heat shock protein 70
Probab=99.30 E-value=2.1e-10 Score=120.70 Aligned_cols=188 Identities=16% Similarity=0.164 Sum_probs=116.6
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCCe--------eeeccceeeCCCCcccCCcccccccccc-------------c----
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPAV--------TIPNCMYRPLSSKKFIHPSPTAASATED-------------L---- 55 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~~--------~~ps~~~~~~~~~~~~~G~~~~~~~~~~-------------~---- 55 (397)
|..+|-||+|+.++++++..+..|.+ .+||+++...+ .+.++|+.+......+ .
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~ 79 (621)
T CHL00094 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKK-GDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE 79 (621)
T ss_pred CCceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCC-CCEEECHHHHHhHHhCccceehhhHHhcCCChHH
Confidence 67899999999999999986655542 35677665322 2344555433100000 0
Q ss_pred -----------------ccceeeCcccCCcccCHHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHH
Q 016004 56 -----------------TSAAVRRPIDRGYLINSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (397)
Q Consensus 56 -----------------~~~~~~~p~~~g~i~~~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~ 115 (397)
+...+..+.....+...+....+|.++.. ..++. .-..++++.|.+.....|+.+.+.
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH
Confidence 00011111111122233444555655543 22221 224688899999988888877666
Q ss_pred hhhhcCCceeeeecccccchhhccccCCCCCCC-CCceEEEEecCCCceEEEeeeCceec---ccccEEeeccHHHHHHH
Q 016004 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQNFTV---NYAVKRIDLGGKALTNY 191 (397)
Q Consensus 116 lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~dG~~~---~~~~~~~~~gG~~l~~~ 191 (397)
. +..|+.-+.++++|.+|++ ++|+.. ...+-+|+|+|++.++|+-+.-+... ........+||.++|+.
T Consensus 158 a-~~AGl~v~~li~EptAAAl------ay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~ 230 (621)
T CHL00094 158 G-KIAGLEVLRIINEPTAASL------AYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK 230 (621)
T ss_pred H-HHcCCceEEEeccHHHHHH------HhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence 4 7889999999999999999 554221 23467999999999999887544222 11223368999999999
Q ss_pred HHHHHHh
Q 016004 192 LKELVSY 198 (397)
Q Consensus 192 l~~ll~~ 198 (397)
|.+.+..
T Consensus 231 l~~~~~~ 237 (621)
T CHL00094 231 IVNWLIK 237 (621)
T ss_pred HHHHHHH
Confidence 9877654
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.28 E-value=1.3e-10 Score=122.51 Aligned_cols=188 Identities=17% Similarity=0.157 Sum_probs=114.4
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCccccccccc--c-----------ccc--
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATE--D-----------LTS-- 57 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~~~~--~-----------~~~-- 57 (397)
|..+|-||+||.++++++..+..|. ..+||+++...+ ++.++|+.+...... . ...
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~-~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~ 79 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKD-GERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEE 79 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCC-CCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchH
Confidence 7788999999999999998655443 345777766432 345567665421000 0 000
Q ss_pred ---ceeeCccc-------------CCcccCH-HHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHHhh
Q 016004 58 ---AAVRRPID-------------RGYLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVF 117 (397)
Q Consensus 58 ---~~~~~p~~-------------~g~i~~~-d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lF 117 (397)
..-.+|++ .|..... +....+|.++.. ..++. .-..++++.|.+.+...|+.+.+..
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~--~v~~~VItVPa~f~~~qR~a~~~Aa- 156 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGE--KVTEAVITVPAYFNDAQRQATKDAG- 156 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CCceEEEEECCCCCHHHHHHHHHHH-
Confidence 00001110 1221122 223334444332 22222 2246899999999999988776554
Q ss_pred hhcCCceeeeecccccchhhccccCCCCCCC-CCceEEEEecCCCceEEEeeeCce--e-cccccEEeeccHHHHHHHHH
Q 016004 118 EDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQNF--T-VNYAVKRIDLGGKALTNYLK 193 (397)
Q Consensus 118 E~~~vp~v~~~~~~~la~~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~dG~--~-~~~~~~~~~~gG~~l~~~l~ 193 (397)
+..|+.-+.+++.|.+|++ ++|+.. ...+-+|+|+|.+.+.|+-+--+- . +........+||.++|+.|.
T Consensus 157 ~~AGl~v~~li~EptAAAl------~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 230 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAAL------AYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRII 230 (627)
T ss_pred HHcCCceEEEecchHHHHH------HhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHH
Confidence 7789999999999999999 444211 246789999999999887664431 1 11222235799999999998
Q ss_pred HHHHh
Q 016004 194 ELVSY 198 (397)
Q Consensus 194 ~ll~~ 198 (397)
+.+..
T Consensus 231 ~~~~~ 235 (627)
T PRK00290 231 DYLAD 235 (627)
T ss_pred HHHHH
Confidence 77654
No 30
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.26 E-value=1.5e-10 Score=121.20 Aligned_cols=186 Identities=17% Similarity=0.126 Sum_probs=115.7
Q ss_pred eEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCcccccccccc-------------cc--cc--
Q 016004 4 IVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATED-------------LT--SA-- 58 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~~~~~-------------~~--~~-- 58 (397)
+|-||+|+-++.+++..+..|. ..+||+++...+ .+.++|..+......+ .. ..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~ 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD-GGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC-CCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh
Confidence 4789999999999987655443 236888876432 2455676653210000 00 00
Q ss_pred eeeCcc--------------cCCcccCHHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcC
Q 016004 59 AVRRPI--------------DRGYLINSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFN 121 (397)
Q Consensus 59 ~~~~p~--------------~~g~i~~~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~ 121 (397)
.-.+|+ ..|.+.-.+....+|.++.. ..++. .-..++++.|.+.+...|+.+.+. .+..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AG 156 (599)
T TIGR01991 80 FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGG--DLVGAVITVPAYFDDAQRQATKDA-ARLAG 156 (599)
T ss_pred cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHH-HHHcC
Confidence 001122 11222223344445555443 22322 235799999999999999987666 58899
Q ss_pred CceeeeecccccchhhccccCCCCCCC-CCceEEEEecCCCceEEEeee--Ccee-cccccEEeeccHHHHHHHHHHHHH
Q 016004 122 FKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYLKELVS 197 (397)
Q Consensus 122 vp~v~~~~~~~la~~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~gG~~l~~~l~~ll~ 197 (397)
+.-+.+++.|.+|++ ++|+.. ...+-+|+|+|++.++|+-+- +|.. +........+||.++|+.|.+.+.
T Consensus 157 l~v~~li~EPtAAAl------ay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~ 230 (599)
T TIGR01991 157 LNVLRLLNEPTAAAV------AYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWIL 230 (599)
T ss_pred CCceEEecCHHHHHH------HHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 999999999999998 444221 245679999999999887663 3432 111222358999999999998876
Q ss_pred hc
Q 016004 198 YR 199 (397)
Q Consensus 198 ~~ 199 (397)
.+
T Consensus 231 ~~ 232 (599)
T TIGR01991 231 KQ 232 (599)
T ss_pred Hh
Confidence 44
No 31
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.24 E-value=1.1e-09 Score=115.88 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=116.4
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCccccccc------------------ccc
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASA------------------TED 54 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~~------------------~~~ 54 (397)
|+.+|-||+|+.+..+++..+..|. ..+||+++...+ .+.++|+.+.... ..+
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN-GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCC-CCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch
Confidence 3568999999999999998665554 334777765432 2334555433100 000
Q ss_pred ----------------cccceeeCcccCCcccCHHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHH
Q 016004 55 ----------------LTSAAVRRPIDRGYLINSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (397)
Q Consensus 55 ----------------~~~~~~~~p~~~g~i~~~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~ 115 (397)
.+...+..+.....+.-.+....+|.++.. ..++. .-..++++.|.+.+...|+.+.+.
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH
Confidence 000111111112222334455556666553 22321 235799999999999988877654
Q ss_pred hhhhcCCceeeeecccccchhhccccCCCCCCC-CCceEEEEecCCCceEEEeeeCceec---ccccEEeeccHHHHHHH
Q 016004 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQNFTV---NYAVKRIDLGGKALTNY 191 (397)
Q Consensus 116 lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~dG~~~---~~~~~~~~~gG~~l~~~ 191 (397)
.+..|+.-+.++++|.+|++ ++|... ...+-+|+|+|.+.++|+-+.-+... ........+||.++|+.
T Consensus 195 -a~~AGl~v~~li~EPtAAAl------ayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~ 267 (673)
T PLN03184 195 -GRIAGLEVLRIINEPTAASL------AYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 267 (673)
T ss_pred -HHHCCCCeEEEeCcHHHHHH------HhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence 47889999999999999999 444221 23467999999999988776433211 11222358999999999
Q ss_pred HHHHHHh
Q 016004 192 LKELVSY 198 (397)
Q Consensus 192 l~~ll~~ 198 (397)
|.+.+..
T Consensus 268 L~~~~~~ 274 (673)
T PLN03184 268 IVDWLAS 274 (673)
T ss_pred HHHHHHH
Confidence 9987754
No 32
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.23 E-value=3.8e-10 Score=118.41 Aligned_cols=185 Identities=18% Similarity=0.181 Sum_probs=111.6
Q ss_pred eEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCccccccccccc--ccce--------------
Q 016004 4 IVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDL--TSAA-------------- 59 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~-------------- 59 (397)
+|-||+|+.++++++..+..|. ..+||+++...+ .+.++|+.+........ ....
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~-~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKN-GERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC-CCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 6889999999999998655554 235777765432 24456766542100000 0000
Q ss_pred --eeCccc------------CCcccCH-HHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcC
Q 016004 60 --VRRPID------------RGYLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFN 121 (397)
Q Consensus 60 --~~~p~~------------~g~i~~~-d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~ 121 (397)
-.+|+. .|..... +....+|.++.. ..++. .-..++++.|.+.+...|+.+.+. .+..|
T Consensus 81 ~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AG 157 (595)
T TIGR02350 81 EAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGE--KVTEAVITVPAYFNDAQRQATKDA-GKIAG 157 (595)
T ss_pred HhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH-HHHcC
Confidence 001110 1221111 223334444432 22221 224689999999999999887764 47789
Q ss_pred CceeeeecccccchhhccccCCCCCC--CCCceEEEEecCCCceEEEeee--Ccee-cccccEEeeccHHHHHHHHHHHH
Q 016004 122 FKSLFVADPPSLVHLYEASRRPYGLL--SETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYLKELV 196 (397)
Q Consensus 122 vp~v~~~~~~~la~~~~~~~~a~g~~--~~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~gG~~l~~~l~~ll 196 (397)
+.-+.++++|.+|++ ++|+. ....+-+|+|+|++.++++-+. +|.. +........+||.++|+.|.+.+
T Consensus 158 l~v~~li~EptAAAl------~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~ 231 (595)
T TIGR02350 158 LEVLRIINEPTAAAL------AYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWL 231 (595)
T ss_pred CceEEEecchHHHHH------HHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHH
Confidence 999999999999999 44321 1246679999999999887664 2322 11222235799999999998777
Q ss_pred Hh
Q 016004 197 SY 198 (397)
Q Consensus 197 ~~ 198 (397)
..
T Consensus 232 ~~ 233 (595)
T TIGR02350 232 AD 233 (595)
T ss_pred HH
Confidence 53
No 33
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.23 E-value=1.2e-09 Score=108.08 Aligned_cols=101 Identities=15% Similarity=0.033 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCC-CCCceEEEEecCCCceEEEeeeCceecccccEEeec
Q 016004 105 LPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL-SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDL 183 (397)
Q Consensus 105 ~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~-~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~ 183 (397)
+++..+.+.++ ++..|+.-+.+..+|+++++ ++... ......+|||+|++.|+++.+.+|.+.. ...+++
T Consensus 156 ~~~~v~~~~~~-~~~aGl~~~~i~~~~~A~a~------a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~ 226 (371)
T TIGR01174 156 SSTILRNLVKC-VERCGLEVDNIVLSGLASAI------AVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPI 226 (371)
T ss_pred EHHHHHHHHHH-HHHcCCCeeeEEEhhhhhhh------hhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--Eeeecc
Confidence 45555555554 47788888888999999888 43211 1133469999999999999999998765 356899
Q ss_pred cHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccc
Q 016004 184 GGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVS 221 (397)
Q Consensus 184 gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~ 221 (397)
||+++++.+.+.+. .....++++|.+++...
T Consensus 227 GG~~it~~i~~~l~-------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 227 GGNHITKDIAKALR-------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred hHHHHHHHHHHHhC-------CCHHHHHHHHHHeeEec
Confidence 99999999876543 23456899999987654
No 34
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.22 E-value=7.4e-10 Score=117.00 Aligned_cols=188 Identities=18% Similarity=0.177 Sum_probs=114.5
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCcccccccccc-------------ccc--
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATED-------------LTS-- 57 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~~~~~-------------~~~-- 57 (397)
|..+|-||+|+.+.++++..+..|. ..+||+++.... .+.++|+.+......+ ...
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~ 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKD-GELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCC-CCEEECHHHHHhhHhCccceehHHhhhhCCCchh
Confidence 7789999999999999998655553 345788776432 2345565543110000 000
Q ss_pred ---ceeeCcc-----cCC----------cccCH-HHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHH
Q 016004 58 ---AAVRRPI-----DRG----------YLINS-DLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (397)
Q Consensus 58 ---~~~~~p~-----~~g----------~i~~~-d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~ 115 (397)
....+|+ .+| ....- +....+|.++.. ..++. .-..++++.|.+.+...|+.+.+.
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGE--PVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHH
Confidence 0000111 111 11111 222334444432 22322 124689999999999999876665
Q ss_pred hhhhcCCceeeeecccccchhhccccCCCCCCC-CCceEEEEecCCCceEEEeee--Ccee-cccccEEeeccHHHHHHH
Q 016004 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNY 191 (397)
Q Consensus 116 lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~gG~~l~~~ 191 (397)
. +..|+.-+.+++.|.+|++ ++|+.. ...+-+|+|+|++.++|+-+. +|.. +..+.....+||.++|+.
T Consensus 158 a-~~AGl~v~~li~EPtAAAl------ayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~ 230 (668)
T PRK13410 158 G-RIAGLEVERILNEPTAAAL------AYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230 (668)
T ss_pred H-HHcCCCeEEEecchHHHHH------HhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence 4 7889999999999999999 554321 245679999999999887664 3322 112222357999999999
Q ss_pred HHHHHHh
Q 016004 192 LKELVSY 198 (397)
Q Consensus 192 l~~ll~~ 198 (397)
|.+.+..
T Consensus 231 l~~~l~~ 237 (668)
T PRK13410 231 IVDWLAE 237 (668)
T ss_pred HHHHHHH
Confidence 8877654
No 35
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.21 E-value=8.6e-10 Score=115.02 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=112.3
Q ss_pred CeEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCccccc---c-----ccccc---ccc-----
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAA---S-----ATEDL---TSA----- 58 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~---~-----~~~~~---~~~----- 58 (397)
.+|-||+|+-+..+++..+..|. ..+||+++...+ +.++|+.+.- + ...+. ...
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~--~~~vG~~Ati~~~KrliG~~~~~~~~~~~~~~~~k 97 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN--NFTIGNNKGLRSIKRLFGKTLKEILNTPALFSLVK 97 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC--CEEECchhhHHHHHHHhCCCchhhccchhhHhhhh
Confidence 47889999999999888544432 345777765432 2455654310 0 00000 000
Q ss_pred -ee-----eCccc-CCcc-cCHHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeee
Q 016004 59 -AV-----RRPID-RGYL-INSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFV 127 (397)
Q Consensus 59 -~~-----~~p~~-~g~i-~~~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~ 127 (397)
.+ ..++. .|.. .-.+....+|.++.. ..++ ..-..++++.|.+.+...|+.+.+. .+..|+.-+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg--~~v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~l 174 (595)
T PRK01433 98 DYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLK--TNITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRL 174 (595)
T ss_pred heeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCcceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEE
Confidence 00 00111 1221 112333445554433 2232 1235789999999999888877766 57889999999
Q ss_pred ecccccchhhccccCCCCCCC-CCceEEEEecCCCceEEEeee--Ccee-cccccEEeeccHHHHHHHHHHHHHhc
Q 016004 128 ADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYLKELVSYR 199 (397)
Q Consensus 128 ~~~~~la~~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~gG~~l~~~l~~ll~~~ 199 (397)
++.|.+|++ ++|+.. ...+-+|+|+|.+.++|+-+- +|.. +........+||.++|..|.+.+..+
T Consensus 175 i~EPtAAAl------ay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 175 IAEPTAAAY------AYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred ecCcHHHHH------HHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 999999999 554221 134569999999999887663 4422 11122235799999999999887654
No 36
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.19 E-value=1.1e-09 Score=115.22 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=74.1
Q ss_pred CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCC-CCceEEEEecCCCceEEEeee--C
Q 016004 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--Q 170 (397)
Q Consensus 94 ~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~--d 170 (397)
..++++.|.+.....|+.+.+. .+..|+.-+.+++.|.+|++ ++|+.. ...+-+|+|+|.+.++|+-+. +
T Consensus 161 ~~aVITVPayF~~~qR~at~~A-a~~AGl~v~rlInEPtAAAl------ayg~~~~~~~~vlV~DlGGGT~DvSil~~~~ 233 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDA-GTIAGLNVIRVVNEPTAAAL------AYGMDKTKDSLIAVYDLGGGTFDISVLEIAG 233 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHH-HHHcCCCeEEEEcChHHHHH------HHhccCCCCCEEEEEECCCCeEEEEEEEEeC
Confidence 4789999999999888876654 47889999999999999999 555221 235679999999999887765 5
Q ss_pred ceec-ccccEEeeccHHHHHHHHHHHHHh
Q 016004 171 NFTV-NYAVKRIDLGGKALTNYLKELVSY 198 (397)
Q Consensus 171 G~~~-~~~~~~~~~gG~~l~~~l~~ll~~ 198 (397)
|..- ..+.....+||.++|+.|.+.+..
T Consensus 234 g~~~V~at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 234 GVFEVKATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred CEEEEEEecCCCCCCchhHHHHHHHHHHH
Confidence 6432 222234689999999998876654
No 37
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.16 E-value=9.8e-10 Score=115.35 Aligned_cols=186 Identities=17% Similarity=0.133 Sum_probs=114.3
Q ss_pred CeEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCcccccccc------------------cccc
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASAT------------------EDLT 56 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~~~------------------~~~~ 56 (397)
.+|-||+|+-++.+++..+..|. ..+||+++...+ +.++|..+..... .+..
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~--~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED--GIEVGYEARANAAQDPKNTISSVKRFMGRSLADIQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC--CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhhh
Confidence 35889999999999987555443 246777765433 2556665531100 0000
Q ss_pred cceeeCcc--------------cCCcccCHHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhh
Q 016004 57 SAAVRRPI--------------DRGYLINSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDELVFED 119 (397)
Q Consensus 57 ~~~~~~p~--------------~~g~i~~~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~ 119 (397)
...-.+|+ ..|.+.-.+....+|.++.. ..++. .-..++++.|.+.+...|+.+.+. .+.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~A-a~~ 174 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQATKDA-ARL 174 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHH-HHH
Confidence 00001111 11222222344445555543 22322 235789999999999998877555 588
Q ss_pred cCCceeeeecccccchhhccccCCCCCCC-CCceEEEEecCCCceEEEeee--Ccee-cccccEEeeccHHHHHHHHHHH
Q 016004 120 FNFKSLFVADPPSLVHLYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYLKEL 195 (397)
Q Consensus 120 ~~vp~v~~~~~~~la~~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~gG~~l~~~l~~l 195 (397)
.|+.-+.++++|.+|++ ++|+.. ...+-+|+|+|.+.++|+.+- +|.. +........+||.++|+.|.+.
T Consensus 175 AGl~v~~li~EPtAAAl------ay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAI------AYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred cCCCeEEEecchHHHHH------HhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 99999999999999998 444221 234568999999999987764 3322 1222233579999999999987
Q ss_pred HHhc
Q 016004 196 VSYR 199 (397)
Q Consensus 196 l~~~ 199 (397)
+..+
T Consensus 249 ~~~~ 252 (616)
T PRK05183 249 ILEQ 252 (616)
T ss_pred HHHH
Confidence 7654
No 38
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.16 E-value=2.1e-09 Score=113.73 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=73.4
Q ss_pred CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeee--Cc
Q 016004 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVF--QN 171 (397)
Q Consensus 94 ~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~--dG 171 (397)
..++++.|.+.+...|+.+.+. .+..|+.-+.+++.|.+|++++..... .....+-+|+|+|++.++|+-+- +|
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~---~~~~~~vlv~D~GggT~dvsv~~~~~~ 216 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKDA-GTIAGLNVLRIINEPTAAAIAYGLDKK---GDGEKNVLIFDLGGGTFDVSLLTIEDG 216 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHHH-HHHcCCceeEEecchHHHHHHHhhhcc---CCCCCEEEEEECCCCeEEEEEEEEeCC
Confidence 5789999999999988876664 478899999999999999994321100 01245789999999999887654 44
Q ss_pred eec-ccccEEeeccHHHHHHHHHHHHHh
Q 016004 172 FTV-NYAVKRIDLGGKALTNYLKELVSY 198 (397)
Q Consensus 172 ~~~-~~~~~~~~~gG~~l~~~l~~ll~~ 198 (397)
..- ........+||.++|..|.+.+..
T Consensus 217 ~~~v~a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 217 IFEVKATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred eEEEEEecCCCCCChHHHHHHHHHHHHH
Confidence 322 122223579999999999877754
No 39
>PRK11678 putative chaperone; Provisional
Probab=99.03 E-value=7.7e-09 Score=104.35 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=65.0
Q ss_pred CeEEEEccCCCC-----HHHHHHH--HHHhhhhcCCceeeeecccccchhhccccCCCCCC-CCCceEEEEecCCCceEE
Q 016004 94 SSLLLTEPLFAL-----PSIQRAT--DELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL-SETQCSLVVDCGFSFTHA 165 (397)
Q Consensus 94 ~pvll~e~~~~~-----~~~r~~l--~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~-~~~~tglVVDiG~~~t~v 165 (397)
..++++.|.... ...|+.. ..-..+..|++.+.+++.|.+|++ ++|.. ....+-+|+|+|.+.+++
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl------~y~~~~~~~~~vlV~D~GGGT~D~ 223 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGL------DFEATLTEEKRVLVVDIGGGTTDC 223 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHH------HhccccCCCCeEEEEEeCCCeEEE
Confidence 568999998754 4455432 455568889999999999999999 44321 124567999999999888
Q ss_pred EeeeCc-----------eecccccEEeeccHHHHHHHHH
Q 016004 166 APVFQN-----------FTVNYAVKRIDLGGKALTNYLK 193 (397)
Q Consensus 166 ~pV~dG-----------~~~~~~~~~~~~gG~~l~~~l~ 193 (397)
+-|-=+ .++..+. ..+||.++|+.|.
T Consensus 224 Svv~~~~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 224 SMLLMGPSWRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred EEEEecCcccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 766421 1222222 3699999999986
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.99 E-value=8.9e-09 Score=108.33 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=69.5
Q ss_pred CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCC--CCceEEEEecCCCceEEEeee--
Q 016004 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVF-- 169 (397)
Q Consensus 94 ~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~--~~~tglVVDiG~~~t~v~pV~-- 169 (397)
..++++.|...+...|+.+.+.+ +..|+..+.+++.|.+|+++ +++.. ...+-+|+|+|++.++|+-+-
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~------y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~ 208 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALA------YGLERSDKGKTVLVVDFGGGTFDVSVVEFS 208 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHH------TTTTSSSSEEEEEEEEEESSEEEEEEEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeeccccccccc------ccccccccccceeccccccceEeeeehhcc
Confidence 46899999999999988777665 67888888999999999883 32111 135679999999999877664
Q ss_pred Cceec-ccccEEeeccHHHHHHHHHHHHHh
Q 016004 170 QNFTV-NYAVKRIDLGGKALTNYLKELVSY 198 (397)
Q Consensus 170 dG~~~-~~~~~~~~~gG~~l~~~l~~ll~~ 198 (397)
+|..- ........+||.++|..|.+.+..
T Consensus 209 ~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 209 NGQFEVLATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp TTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccceecceeeccccc
Confidence 44332 222334689999999999988764
No 41
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.90 E-value=9.5e-09 Score=103.30 Aligned_cols=100 Identities=13% Similarity=-0.029 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCC-CceEEEEecCCCceEEEeeeCceecccccEEeec
Q 016004 105 LPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSE-TQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDL 183 (397)
Q Consensus 105 ~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~-~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~ 183 (397)
+.+..+++.+ +++..++.-..+..+|+++++ +...... ....+|||+|++.|+++-+.+|.+... ..+++
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~------a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~--~~i~~ 234 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSY------AVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT--KVIPY 234 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHH------HhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE--eeeec
Confidence 4455555665 558889988899999999998 5432111 234699999999999999999987754 45899
Q ss_pred cHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCcc
Q 016004 184 GGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFV 220 (397)
Q Consensus 184 gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v 220 (397)
||+++++.|...|. .....++.+|.++...
T Consensus 235 GG~~it~dIa~~l~-------i~~~~AE~lK~~~g~~ 264 (420)
T PRK09472 235 AGNVVTSDIAYAFG-------TPPSDAEAIKVRHGCA 264 (420)
T ss_pred hHHHHHHHHHHHhC-------cCHHHHHHHHHhccee
Confidence 99999999886653 2346688898877544
No 42
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.76 E-value=1.1e-07 Score=92.22 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=113.6
Q ss_pred EECCCccEEEEEeC-CCCC-CeeeeccceeeC--------------------CCCcccCCcccccccccccccceeeCcc
Q 016004 7 LDNGGGLIKAGHGG-ERDP-AVTIPNCMYRPL--------------------SSKKFIHPSPTAASATEDLTSAAVRRPI 64 (397)
Q Consensus 7 iD~Gs~~ik~G~ag-~~~P-~~~~ps~~~~~~--------------------~~~~~~~G~~~~~~~~~~~~~~~~~~p~ 64 (397)
||+|-.++|+-+.+ +..+ ...|||.++... ++.+|.+|+.+. ...+... .+-+
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~--~~~~~~~---~~~~ 76 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVS--LAADTNR---ARQL 76 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchh--hcccCcc---ceec
Confidence 79999999987753 2232 467888875321 122445565543 1111000 0011
Q ss_pred cCCcccCHHHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhh--------cCCceeeeecccccchh
Q 016004 65 DRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFED--------FNFKSLFVADPPSLVHL 136 (397)
Q Consensus 65 ~~g~i~~~d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~--------~~vp~v~~~~~~~la~~ 136 (397)
..... .-+....++.+++.. .+.+ .-..+++-.|...-...++.+.+.+-.. ..+..+.+.++++.|++
T Consensus 77 ~~~~~-~~~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~ 153 (320)
T TIGR03739 77 HDEYT-ETPEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALV 153 (320)
T ss_pred ccccc-CCHHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHH
Confidence 11121 224677788888753 2222 1123555566555566778787776532 57788899999998877
Q ss_pred hccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhc
Q 016004 137 YEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYR 199 (397)
Q Consensus 137 ~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~ 199 (397)
....... +........+|||+|+..|.++.+-++.+....+...+.|-..+.+.+.+.+.++
T Consensus 154 ~~~~~~~-~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 154 HFVAQHG-KLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred HHHhcCC-CcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 4321000 0011245569999999999999988888888777778899999999999888755
No 43
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.74 E-value=5.8e-07 Score=87.97 Aligned_cols=127 Identities=15% Similarity=0.085 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhcccCCC-C-CCCeEEE--EccCCCC-HHHHHHHHHHhhhh-----------cCCceeeeecccccchh
Q 016004 73 DLQRDIWAHLFSSLLHIS-P-SASSLLL--TEPLFAL-PSIQRATDELVFED-----------FNFKSLFVADPPSLVHL 136 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~-~-~~~pvll--~e~~~~~-~~~r~~l~e~lFE~-----------~~vp~v~~~~~~~la~~ 136 (397)
+.+..++..++...+... + +...++| -.|...- ...++.+.+.+-.. ..+..+.+.++++.+++
T Consensus 88 ~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~ 167 (344)
T PRK13917 88 KQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLL 167 (344)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHH
Confidence 467777777764333221 1 2233443 3443332 22235565554222 35667888999988877
Q ss_pred hccccCCCCC----CCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcC
Q 016004 137 YEASRRPYGL----LSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRA 200 (397)
Q Consensus 137 ~~~~~~a~g~----~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~ 200 (397)
..... ..|. ......-+|||+|+..|.++-+.+|.+....+...+.|..++.+.+.+.+..+.
T Consensus 168 ~~~~~-~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~ 234 (344)
T PRK13917 168 DLYLD-NDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKKE 234 (344)
T ss_pred HHHhc-ccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhhC
Confidence 32110 0010 011234699999999999999999999888777789999999999999986443
No 44
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.72 E-value=3.3e-06 Score=82.81 Aligned_cols=100 Identities=9% Similarity=-0.034 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHhhhhcCCceeeeecccccchhhcc----ccCCCCCCCCCc-eEEEEecCCCceEEEeeeCceecccccE
Q 016004 105 LPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEA----SRRPYGLLSETQ-CSLVVDCGFSFTHAAPVFQNFTVNYAVK 179 (397)
Q Consensus 105 ~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~----~~~a~g~~~~~~-tglVVDiG~~~t~v~pV~dG~~~~~~~~ 179 (397)
+++..+.+.++ |+..|+.-..+..++++..-... ...... ... +.++||+|++.|+++-+.+|.++.. +
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~---~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r 214 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRT---YRLTDAALVDIGATSSTLNLLHPGRMLFT--R 214 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCcccc---ccCceEEEEEECCCcEEEEEEECCeEEEE--E
Confidence 55666666665 46666654444444433321000 000010 123 3899999999999999999998885 5
Q ss_pred EeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhc
Q 016004 180 RIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKL 217 (397)
Q Consensus 180 ~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~ 217 (397)
.+++||.++++.+.+.+. .+...++++|...
T Consensus 215 ~i~~G~~~i~~~i~~~~~-------~~~~~Ae~~k~~~ 245 (348)
T TIGR01175 215 EVPFGTRQLTSELSRAYG-------LNPEEAGEAKQQG 245 (348)
T ss_pred EeechHHHHHHHHHHHcC-------CCHHHHHHHHhcC
Confidence 689999999998876543 1224466666654
No 45
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.6e-06 Score=90.36 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=117.3
Q ss_pred CCeEEEECCCccEEEEEeCCC-CCC--------eeeeccceeeCCCCcccCCccccccccccc--ccceeeCcccC----
Q 016004 2 SNIVVLDNGGGLIKAGHGGER-DPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDL--TSAAVRRPIDR---- 66 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~-~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~~p~~~---- 66 (397)
+.+|-||+|+-++-+.+.... .|. ..+||+++...+. +.++|..+......+. ....++.-+-.
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~-~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNG-EVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCC-CEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 378999999999999888755 343 3446666654333 5667766552111111 11222222221
Q ss_pred --------CcccCH-HHHHHHHHHHhhcccC--CCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccch
Q 016004 67 --------GYLINS-DLQRDIWAHLFSSLLH--ISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVH 135 (397)
Q Consensus 67 --------g~i~~~-d~~e~ll~~~~~~~l~--~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~ 135 (397)
|..... +....+|.++-. ... ....-..++++.|.+..-..|+.+.+ .....|++-+.+++.|.+|+
T Consensus 84 ~~~~~~~~~~~~~~eeisa~~L~~lk~-~ae~~lg~~v~~~VItVPayF~d~qR~at~~-A~~iaGl~vlrlinEPtAAA 161 (579)
T COG0443 84 LKISVEVDGKKYTPEEISAMILTKLKE-DAEAYLGEKVTDAVITVPAYFNDAQRQATKD-AARIAGLNVLRLINEPTAAA 161 (579)
T ss_pred CcceeeeCCeeeCHHHHHHHHHHHHHH-HHHHhhCCCcceEEEEeCCCCCHHHHHHHHH-HHHHcCCCeEEEecchHHHH
Confidence 111122 122223333221 110 12234689999999999988775554 45788999999999999999
Q ss_pred hhccccCCCCCCC-CCceEEEEecCCCceEEEeeeCc--ee-cccccEEeeccHHHHHHHHHHHHHhc
Q 016004 136 LYEASRRPYGLLS-ETQCSLVVDCGFSFTHAAPVFQN--FT-VNYAVKRIDLGGKALTNYLKELVSYR 199 (397)
Q Consensus 136 ~~~~~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~dG--~~-~~~~~~~~~~gG~~l~~~l~~ll~~~ 199 (397)
| ++|+.. ...+-+|+|+|.+.+++.-|-=+ .. .........+||+++|+.|...+..+
T Consensus 162 l------ayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 162 L------AYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred H------HhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHH
Confidence 9 776443 34577999999999988776543 21 22334457899999999988776543
No 46
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.61 E-value=3.5e-06 Score=82.47 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=35.7
Q ss_pred ceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHH
Q 016004 151 QCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVS 197 (397)
Q Consensus 151 ~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~ 197 (397)
.+-++||+|++.|+++-+.+|.++.. +.+++||.++++.+.+.+.
T Consensus 180 ~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~ 224 (340)
T PF11104_consen 180 ETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELG 224 (340)
T ss_dssp -EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT
T ss_pred ceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcC
Confidence 45689999999999999999999875 5689999999999887653
No 47
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.40 E-value=8.9e-07 Score=87.78 Aligned_cols=103 Identities=16% Similarity=0.019 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeecc
Q 016004 105 LPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG 184 (397)
Q Consensus 105 ~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~g 184 (397)
+....++|.+++ |+.++.-..+.-+|++++.... .. +.+.-..++||+|++.|+|+-+.+|.+.... .+++|
T Consensus 163 ~~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L---~~--dEkelGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvg 234 (418)
T COG0849 163 PKNILENLEKCV-ERAGLKVDNIVLEPLASALAVL---TE--DEKELGVALIDIGGGTTDIAIYKNGALRYTG--VIPVG 234 (418)
T ss_pred chHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhcc---Cc--ccHhcCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeC
Confidence 455556565555 7777777777778888776211 11 1234457999999999999999999888864 48999
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCcccc
Q 016004 185 GKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSL 222 (397)
Q Consensus 185 G~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~ 222 (397)
|.++|+-+...|. .+...+|++|.++.....
T Consensus 235 G~~vT~DIa~~l~-------t~~~~AE~iK~~~g~a~~ 265 (418)
T COG0849 235 GDHVTKDIAKGLK-------TPFEEAERIKIKYGSALI 265 (418)
T ss_pred ccHHHHHHHHHhC-------CCHHHHHHHHHHcCcccc
Confidence 9999999997775 455679999999876544
No 48
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00099 Score=64.53 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=74.2
Q ss_pred eEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCC--CCCceEEEEecCCCceEE--EeeeC
Q 016004 95 SLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL--SETQCSLVVDCGFSFTHA--APVFQ 170 (397)
Q Consensus 95 pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~--~~~~tglVVDiG~~~t~v--~pV~d 170 (397)
.-+++.|.+.+..+|+..-..= -..+..-+-+++.|.+|+. |+|++ .+..+-||.|.|.+...| +-|-+
T Consensus 174 ~AVvTvPAYFNDAQrQATKDAG-tIAgLnV~RIiNePTaAAI------AYGLDKk~gEknilVfDLGGGTFDVSlLtIdn 246 (663)
T KOG0100|consen 174 HAVVTVPAYFNDAQRQATKDAG-TIAGLNVVRIINEPTAAAI------AYGLDKKDGEKNILVFDLGGGTFDVSLLTIDN 246 (663)
T ss_pred ceEEecchhcchHHHhhhcccc-eeccceEEEeecCccHHHH------HhcccccCCcceEEEEEcCCceEEEEEEEEcC
Confidence 5578888888888888654331 1224455788999999999 77754 335577999999887655 45556
Q ss_pred cee-cccccEEeeccHHHHHHHHHHHHHh-----cCCCCCChHHHHHHHHHh
Q 016004 171 NFT-VNYAVKRIDLGGKALTNYLKELVSY-----RAINVMDETFIIDDVKEK 216 (397)
Q Consensus 171 G~~-~~~~~~~~~~gG~~l~~~l~~ll~~-----~~~~~~~~~~~~~~iKe~ 216 (397)
|.. +..+-.-..+||.++++.+.+.+.+ .+.++..+...+.+++.+
T Consensus 247 GVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe 298 (663)
T KOG0100|consen 247 GVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRRE 298 (663)
T ss_pred ceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHH
Confidence 643 1222234679999999887765432 244554444555555554
No 49
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.62 E-value=0.00079 Score=65.27 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=65.5
Q ss_pred HHHHHhhcccCCCCCCCeEEEEccCC---C--CHHHHHHHH----HHhh-------hhcCCceeeeecccccchhhcccc
Q 016004 78 IWAHLFSSLLHISPSASSLLLTEPLF---A--LPSIQRATD----ELVF-------EDFNFKSLFVADPPSLVHLYEASR 141 (397)
Q Consensus 78 ll~~~~~~~l~~~~~~~pvll~e~~~---~--~~~~r~~l~----e~lF-------E~~~vp~v~~~~~~~la~~~~~~~ 141 (397)
+..|++.+ -++.+.+-.++++.|.- . .+..++++. .+.. +.+.+..+.+.|+++.|.|.....
T Consensus 81 av~haL~~-~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHALLK-AGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHHHH-HS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 45666653 36677666667776621 1 111122221 1221 245577889999999998843211
Q ss_pred CCCCCCCCCceEEEEecCCCceEEEeeeCceecccccE-EeeccHHHHHHHHHHHHHh
Q 016004 142 RPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVK-RIDLGGKALTNYLKELVSY 198 (397)
Q Consensus 142 ~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~-~~~~gG~~l~~~l~~ll~~ 198 (397)
+ ....+.+|||+|+..+.++-|.++......+. ..++|-..+.+.+.+.|..
T Consensus 160 ----~-~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 160 ----L-DEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp ----S--TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred ----h-cccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 0 11356799999999999998877655444333 3578989999999988875
No 50
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0045 Score=64.34 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=72.2
Q ss_pred CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCC------CCCCceEEEEecCCCceEEEe
Q 016004 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGL------LSETQCSLVVDCGFSFTHAAP 167 (397)
Q Consensus 94 ~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~------~~~~~tglVVDiG~~~t~v~p 167 (397)
..++++.|++.....|..+.+.. .-.|+.-++++++..++++ .+|+ ......-++-|+|.++|.++-
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al------~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ati 231 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVAL------NYGVFRRKEINETPQHYIFYDMGSGSTSATI 231 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHh------hhhhhccccCCCCceEEEEEecCCCceeEEE
Confidence 47899999999999999988876 4567777899999999988 4441 122455688899999999887
Q ss_pred eeCceeccc-------cc------EEeeccHHHHHHHHHHHHHhc
Q 016004 168 VFQNFTVNY-------AV------KRIDLGGKALTNYLKELVSYR 199 (397)
Q Consensus 168 V~dG~~~~~-------~~------~~~~~gG~~l~~~l~~ll~~~ 199 (397)
|.--.+-.. .+ ....+||..++..|++.|...
T Consensus 232 vsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 232 VSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANE 276 (902)
T ss_pred EEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHH
Confidence 753222111 11 123678999999999988754
No 51
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0014 Score=62.21 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=38.5
Q ss_pred EEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHH
Q 016004 153 SLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVS 197 (397)
Q Consensus 153 glVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~ 197 (397)
.+|+|||++.|.++-+++|+++.. +..++||+++++.+.+.+.
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~ 237 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYS 237 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhC
Confidence 469999999999999999999986 6689999999999887764
No 52
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.015 Score=60.20 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=73.2
Q ss_pred CCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCC--------CCCCCceEEEEecCCCceE
Q 016004 93 ASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYG--------LLSETQCSLVVDCGFSFTH 164 (397)
Q Consensus 93 ~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g--------~~~~~~tglVVDiG~~~t~ 164 (397)
-.+++|..|.|.+...|..+++.. -..|+.-+-++.+..++++ ++| ......+-+.||+||+.++
T Consensus 137 v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al------~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q 209 (727)
T KOG0103|consen 137 VSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATAL------AYGIYKTDLPENEEKPRNVVFVDIGHSSYQ 209 (727)
T ss_pred CCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHh------hcccccccCCCcccCcceEEEEecccccce
Confidence 458899999999999999998877 4567777888888888877 555 1233556789999999988
Q ss_pred EEeeeCceeccc---ccEEeeccHHHHHHHHHHHHHhc
Q 016004 165 AAPVFQNFTVNY---AVKRIDLGGKALTNYLKELVSYR 199 (397)
Q Consensus 165 v~pV~dG~~~~~---~~~~~~~gG~~l~~~l~~ll~~~ 199 (397)
+.-.---.-..+ +..--.+||++++..|.+.+...
T Consensus 210 ~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 210 VSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred eeeeeeccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 766543322221 12223799999999999888764
No 53
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=97.24 E-value=0.00046 Score=60.85 Aligned_cols=62 Identities=26% Similarity=0.173 Sum_probs=52.1
Q ss_pred hhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHH
Q 016004 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALT 189 (397)
Q Consensus 116 lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~ 189 (397)
+.|+-+.-.++.++.|.++++ -.+ ...|.|||+|.+.|-|.-+-+|.++..+- -+.||-+++
T Consensus 115 ViESAGlevl~vlDEPTAaa~------vL~----l~dg~VVDiGGGTTGIsi~kkGkViy~AD--EpTGGtHmt 176 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAAD------VLQ----LDDGGVVDIGGGTTGISIVKKGKVIYSAD--EPTGGTHMT 176 (277)
T ss_pred eecccCceeeeecCCchhHHH------Hhc----cCCCcEEEeCCCcceeEEEEcCcEEEecc--CCCCceeEE
Confidence 458889999999999999999 666 88999999999999999999999998642 456666555
No 54
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.013 Score=60.62 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=70.8
Q ss_pred CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCC---CCceEEEEecCCCceEEEeee-
Q 016004 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS---ETQCSLVVDCGFSFTHAAPVF- 169 (397)
Q Consensus 94 ~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~---~~~tglVVDiG~~~t~v~pV~- 169 (397)
..++++.|......+|+.+-+.. ...+++.+-+++.|.++++ |+|+.. +..+-+|.|.|.+...|.++.
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaal------Aygl~k~~~~~~~VlI~DlGggtfdvs~l~i 216 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAAL------AYGLDKKVLGERNVLIFDLGGGTFDVSVLSL 216 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHH------HhhccccccceeeEEEEEcCCCceeeeeEEe
Confidence 47899999998888888665554 5678888999999999999 665322 355679999998888776654
Q ss_pred -Cce-ecccccEEeeccHHHHHHHHHHHHH
Q 016004 170 -QNF-TVNYAVKRIDLGGKALTNYLKELVS 197 (397)
Q Consensus 170 -dG~-~~~~~~~~~~~gG~~l~~~l~~ll~ 197 (397)
+|. .+.....-.++||.++++.|...+.
T Consensus 217 ~gG~~~vkat~gd~~lGGedf~~~l~~h~~ 246 (620)
T KOG0101|consen 217 EGGIFEVKATAGDTHLGGEDFDNKLVNHFA 246 (620)
T ss_pred ccchhhhhhhcccccccchhhhHHHHHHHH
Confidence 342 1222334468999999988876654
No 55
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=96.72 E-value=0.0066 Score=60.79 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=93.6
Q ss_pred eEEEECCCccEEEEEeC----CC-----CCCeeeeccceeeCCCCcccCCcccccccccccccceeeCcccCCcccCHHH
Q 016004 4 IVVLDNGGGLIKAGHGG----ER-----DPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDL 74 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag----~~-----~P~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~ 74 (397)
.|-||+||.+|.+=|+. .. -|++.| -+++.++-++ . ...|+......|-+.
T Consensus 8 SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I--------~dkev~yrS~-----------i-~fTPl~~~~~ID~~~ 67 (475)
T PRK10719 8 SVGIDIGTTTTQVIFSRLELENRASVFQVPRIEI--------IDKEIIYRSP-----------I-YFTPLLKQGEIDEAA 67 (475)
T ss_pred EEEEeccCceEEEEEEEEEEecccccccCceEEE--------eeeEEEEecC-----------c-eecCCCCCccccHHH
Confidence 57899999999987773 11 144333 1122221111 1 234776556668999
Q ss_pred HHHHHHHHhhcccCCCCCC--C-eEEEEccCCCCHHHHHHHHHHhhhhcCCc--eee-----eecc----cccchhhccc
Q 016004 75 QRDIWAHLFSSLLHISPSA--S-SLLLTEPLFALPSIQRATDELVFEDFNFK--SLF-----VADP----PSLVHLYEAS 140 (397)
Q Consensus 75 ~e~ll~~~~~~~l~~~~~~--~-pvll~e~~~~~~~~r~~l~e~lFE~~~vp--~v~-----~~~~----~~la~~~~~~ 140 (397)
++++.+.-|. .-++.+++ . -.+++-.. +. ++++.+++ ++++.. .+- +.-. +++|.....
T Consensus 68 i~~~V~~ey~-~Agi~~~die~~ahIITg~~-~~---~~Nl~~~v-~~~~~~~gdfVVA~AG~~le~iva~~ASg~avL- 140 (475)
T PRK10719 68 IKELIEEEYQ-KAGIAPESIDSGAVIITGET-AR---KENAREVV-MALSGSAGDFVVATAGPDLESIIAGKGAGAQTL- 140 (475)
T ss_pred HHHHHHHHHH-HcCCCHHHccccEEEEEech-hH---HHHHHHHH-HHhcccccceeeeccCccHHHhhhHHHhhHHHh-
Confidence 9999998887 45788754 2 33444332 22 23333333 221111 111 0111 222222100
Q ss_pred cCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHH-----------HHHHHHhcCCCC
Q 016004 141 RRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNY-----------LKELVSYRAINV 203 (397)
Q Consensus 141 ~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~-----------l~~ll~~~~~~~ 203 (397)
........++||+|.+.|+++-+.+|.++... .+++||+.++.- ++.+++..+..+
T Consensus 141 -----seEke~gVa~IDIGgGTT~iaVf~~G~l~~T~--~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~~~ 207 (475)
T PRK10719 141 -----SEERNTRVLNIDIGGGTANYALFDAGKVIDTA--CLNVGGRLIETDSQGRVTYISPPGQMILDELGLAI 207 (475)
T ss_pred -----hhhccCceEEEEeCCCceEEEEEECCEEEEEE--EEecccceEEECCCCCEEEEChHHHHHHHHcCCCc
Confidence 11234456999999999999999999988864 478999977653 455555555543
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.04 E-value=0.081 Score=49.30 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=32.6
Q ss_pred ceEEEEecCCCceEEEeeeCceeccccc-EEeeccHHHHHHHHHHHH
Q 016004 151 QCSLVVDCGFSFTHAAPVFQNFTVNYAV-KRIDLGGKALTNYLKELV 196 (397)
Q Consensus 151 ~tglVVDiG~~~t~v~pV~dG~~~~~~~-~~~~~gG~~l~~~l~~ll 196 (397)
....|||||..-+.++-+-+|.+..-.. .....|+-.+.+.+.+.|
T Consensus 91 ~~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 91 EARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred CCCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 3456999999999999999998763222 234566666776666554
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=94.53 E-value=0.32 Score=48.17 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=29.2
Q ss_pred hccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCCCC
Q 016004 352 YESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEYSH 395 (397)
Q Consensus 352 ~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 395 (397)
-..|+++||.+..+|+.+.|++.|. .+|+.|++|++
T Consensus 356 ~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~ 391 (404)
T TIGR03286 356 REPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQY 391 (404)
T ss_pred CCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccH
Confidence 3459999999999999999999883 45666777764
No 58
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.4 Score=48.70 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=78.8
Q ss_pred CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCC-ceEEEEecCCCceE--EEeeeC
Q 016004 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSET-QCSLVVDCGFSFTH--AAPVFQ 170 (397)
Q Consensus 94 ~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~-~tglVVDiG~~~t~--v~pV~d 170 (397)
..-+++.|.|....+|+..-... .-.+..-+-.++.|.++++ ++|++-.. .+-.|-|+|.+... |.-+.+
T Consensus 161 ~~avvtvpAyfndsqRqaTkdag-~iagl~vlrvineptaaal------aygld~k~~g~iaV~dLgggtfdisilei~~ 233 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDAG-QIAGLNVLRVINEPTAAAL------AYGLDKKEDGVIAVFDLGGGTFDISILEIED 233 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhhh-hhccceeeccCCccchhHH------hhcccccCCCceEEEEcCCceeeeeeehhcc
Confidence 35688899999999988665543 4456666777899999999 88866444 34478899976654 445667
Q ss_pred ceeccc-ccEEeeccHHHHHHHHHHHHHhc-----CCCCCChHHHHHHHHHh
Q 016004 171 NFTVNY-AVKRIDLGGKALTNYLKELVSYR-----AINVMDETFIIDDVKEK 216 (397)
Q Consensus 171 G~~~~~-~~~~~~~gG~~l~~~l~~ll~~~-----~~~~~~~~~~~~~iKe~ 216 (397)
|.-.-. +-.....||.+++.++..++-.. ++++..+...++.++|.
T Consensus 234 gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~ea 285 (640)
T KOG0102|consen 234 GVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREA 285 (640)
T ss_pred ceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHH
Confidence 755433 23346789999999998877432 44444455555555553
No 59
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=93.42 E-value=0.75 Score=47.44 Aligned_cols=93 Identities=13% Similarity=-0.026 Sum_probs=54.6
Q ss_pred CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCcee
Q 016004 94 SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFT 173 (397)
Q Consensus 94 ~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~ 173 (397)
..++-|. ..-.-..++.+.+-+.+..|++ |-++...==|.|.+... ..++.. ..+++|||+|.++|.++-+-+|.+
T Consensus 79 i~~vATs-AvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv-~~~l~~-~~~~lviDIGGGStEl~~~~~~~~ 154 (496)
T PRK11031 79 IRVVATA-TLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGV-AHTTGG-ADQRLVVDIGGASTELVTGTGAQA 154 (496)
T ss_pred EEEEEeH-HHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhh-hhccCC-CCCEEEEEecCCeeeEEEecCCce
Confidence 3334343 3333344566777777777774 44444332222211100 111111 235899999999999999988877
Q ss_pred cccccEEeeccHHHHHHHH
Q 016004 174 VNYAVKRIDLGGKALTNYL 192 (397)
Q Consensus 174 ~~~~~~~~~~gG~~l~~~l 192 (397)
... ..+++|.-.+++.+
T Consensus 155 ~~~--~Sl~lG~vrl~e~f 171 (496)
T PRK11031 155 TSL--FSLSMGCVTWLERY 171 (496)
T ss_pred eee--eEEeccchHHHHHh
Confidence 654 56889987766543
No 60
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=93.22 E-value=1.3 Score=44.73 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=99.0
Q ss_pred eEEEECCCccEEEEEeC---------CCCCCeeeeccceeeCCCCcccCCcccccccccccccceeeCcccCCcccCHHH
Q 016004 4 IVVLDNGGGLIKAGHGG---------ERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDL 74 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag---------~~~P~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~ 74 (397)
.|-||+||.+|+.=|+. -..|++.|- +++.++-+ .. ...|+......|-+.
T Consensus 5 SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~--------dkeViYrS-----------~I-~fTPl~~~~~ID~~a 64 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIV--------DKEVIYRS-----------PI-YFTPLLSQTEIDAEA 64 (473)
T ss_pred EEEEeecCCceeEEEEEeEEEeccCCCccceEEEe--------ccEEEecC-----------Cc-cccCCCCCCccCHHH
Confidence 57899999999987774 112444331 12222111 11 234777666668999
Q ss_pred HHHHHHHHhhcccCCCCCC---CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeec---ccccchhhccccCCCC---
Q 016004 75 QRDIWAHLFSSLLHISPSA---SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVAD---PPSLVHLYEASRRPYG--- 145 (397)
Q Consensus 75 ~e~ll~~~~~~~l~~~~~~---~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~---~~~la~~~~~~~~a~g--- 145 (397)
++++++.-|.+ -++.|++ --|++|--.-..... +.+.+.|=+..|==-|.-+- .+++|.. ++|
T Consensus 65 l~~iv~~eY~~-Agi~p~~I~TGAVIITGETArKeNA-~~v~~~Ls~~aGDFVVATAGPdLEsiiAgk------GsGA~~ 136 (473)
T PF06277_consen 65 LKEIVEEEYRK-AGITPEDIDTGAVIITGETARKENA-REVLHALSGFAGDFVVATAGPDLESIIAGK------GSGAAA 136 (473)
T ss_pred HHHHHHHHHHH-cCCCHHHCccccEEEecchhhhhhH-HHHHHHHHHhcCCEEEEccCCCHHHHHhcc------CccHHH
Confidence 99999998874 5788865 366666543322222 22444443322210111111 2233333 333
Q ss_pred CC-CCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHH-----------HHHHHHHHHHhcCCCC
Q 016004 146 LL-SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKA-----------LTNYLKELVSYRAINV 203 (397)
Q Consensus 146 ~~-~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~-----------l~~~l~~ll~~~~~~~ 203 (397)
+. ....+-+=||||.+.|.++-+-+|.++..++ +++||+. +..-++.++...+.++
T Consensus 137 ~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 137 LSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred HhhhhCCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 11 1233445679999999999999999999765 7799873 3445666666666554
No 61
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=92.87 E-value=0.74 Score=44.17 Aligned_cols=95 Identities=15% Similarity=-0.072 Sum_probs=56.2
Q ss_pred CCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCc
Q 016004 92 SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQN 171 (397)
Q Consensus 92 ~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG 171 (397)
++..++-|.. +-.-..++.+.+.+.+..|+. +-++...-=+.|.+... ..++ ...+++|||+|.++|.++-+-+|
T Consensus 71 ~~i~~vaTsa-~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv-~~~~--~~~~~~v~DiGGGSte~~~~~~~ 145 (300)
T TIGR03706 71 DEVRAVATAA-LRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGV-AHTL--PIADGLVVDIGGGSTELILGKDF 145 (300)
T ss_pred CeEEEEEcHH-HHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHH-HhCC--CCCCcEEEEecCCeEEEEEecCC
Confidence 3344444444 333345667777777777763 44544333232311100 0111 13446999999999999998888
Q ss_pred eecccccEEeeccHHHHHHHHH
Q 016004 172 FTVNYAVKRIDLGGKALTNYLK 193 (397)
Q Consensus 172 ~~~~~~~~~~~~gG~~l~~~l~ 193 (397)
.+... ..+++|.-.+++.+.
T Consensus 146 ~~~~~--~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 146 EPGEG--VSLPLGCVRLTEQFF 165 (300)
T ss_pred CEeEE--EEEccceEEhHHhhC
Confidence 76543 568999888777643
No 62
>PRK10854 exopolyphosphatase; Provisional
Probab=90.56 E-value=1.8 Score=44.87 Aligned_cols=93 Identities=9% Similarity=-0.079 Sum_probs=52.5
Q ss_pred CCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCce
Q 016004 93 ASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNF 172 (397)
Q Consensus 93 ~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~ 172 (397)
+..++-|. .+-.-..++.+++-+.+..|++ |-+++..==+.|.+... ..++.. ...++|||+|.++|.++-+-+|.
T Consensus 83 ~v~~vATs-AlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv-~~~l~~-~~~~lvvDIGGGStEl~~~~~~~ 158 (513)
T PRK10854 83 NVCIVGTH-TLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGV-EHTQPE-KGRKLVIDIGGGSTELVIGENFE 158 (513)
T ss_pred eEEEEehH-HHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhh-hcccCC-CCCeEEEEeCCCeEEEEEecCCC
Confidence 33444443 3333344666777777777774 44444332222211100 112111 24689999999999999998886
Q ss_pred ecccccEEeeccHHHHHHH
Q 016004 173 TVNYAVKRIDLGGKALTNY 191 (397)
Q Consensus 173 ~~~~~~~~~~~gG~~l~~~ 191 (397)
+... ...++|.-.+++.
T Consensus 159 ~~~~--~S~~lG~vrl~e~ 175 (513)
T PRK10854 159 PILV--ESRRMGCVSFAQL 175 (513)
T ss_pred eeEe--EEEecceeeHHhh
Confidence 5543 3357776665553
No 63
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=90.31 E-value=6.5 Score=38.58 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=28.9
Q ss_pred EEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCCCC
Q 016004 355 IILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEYSH 395 (397)
Q Consensus 355 IvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 395 (397)
||++||++...++.+-+++.| ..+|+.|++|++
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql 378 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQL 378 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccch
Confidence 999999999999999999998 367777777765
No 64
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=83.05 E-value=4.1 Score=41.90 Aligned_cols=41 Identities=22% Similarity=0.015 Sum_probs=29.2
Q ss_pred CceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHH
Q 016004 150 TQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYL 192 (397)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l 192 (397)
...++|+|+|.++|-++-+-+..+... ..+++|.-.+++.+
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~~~~~--~Sl~~G~v~lt~~~ 168 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFEIGLL--ISLPLGCVRLTERF 168 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCcccee--EEeecceEEeehhh
Confidence 567899999999999988866555442 44677755555443
No 65
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=77.87 E-value=27 Score=32.55 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.7
Q ss_pred eEEEECCCccEEEEEeCCCC
Q 016004 4 IVVLDNGGGLIKAGHGGERD 23 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~~ 23 (397)
-++||+|--+++.|+..+..
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~ 21 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGK 21 (251)
T ss_pred eEEEEeCCCeEEEEEecCCe
Confidence 47899999999999988543
No 66
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=75.09 E-value=20 Score=34.66 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=82.0
Q ss_pred eEEEECCCccEEEEEeC---------CCCCCeeeeccceeeCCCCcccCCcccccccccccccceeeCccc-CCcccCHH
Q 016004 4 IVVLDNGGGLIKAGHGG---------ERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPID-RGYLINSD 73 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag---------~~~P~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~-~g~i~~~d 73 (397)
.|-||+|+.++.+=|+. -.-|++.|-+ +++.+-+ .. +..|+. .|.+ +.+
T Consensus 7 SVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~--------kdi~~rS-----------~i-~FTPv~~q~~i-d~~ 65 (473)
T COG4819 7 SVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIK--------KDISWRS-----------PI-FFTPVDKQGGI-DEA 65 (473)
T ss_pred eeeeeccCceeeeeeeeeEEeecccccccceEEEEe--------cceeeec-----------ce-eeeeecccCCc-cHH
Confidence 57899999999987773 2235544421 1111111 11 223544 3443 677
Q ss_pred HHHHHHHHHhhcccCCCCCC---CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCC---CC
Q 016004 74 LQRDIWAHLFSSLLHISPSA---SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYG---LL 147 (397)
Q Consensus 74 ~~e~ll~~~~~~~l~~~~~~---~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g---~~ 147 (397)
.++++...=|.+ -++.|+. --|+++-..-..+..|..+. .|=...+==-|.-+-+.+-+.. +.. ++| +.
T Consensus 66 alk~~v~eeY~~-AGi~pesi~sGAvIITGEtArk~NA~~vl~-alSg~aGDFVVAtAGPdLESiI--AGk-GaGA~t~S 140 (473)
T COG4819 66 ALKKLVLEEYQA-AGIAPESIDSGAVIITGETARKRNARPVLM-ALSGSAGDFVVATAGPDLESII--AGK-GAGAQTLS 140 (473)
T ss_pred HHHHHHHHHHHH-cCCChhccccccEEEeccccccccchHHHH-HhhhcccceEEEecCCCHHHHh--ccC-Cccccchh
Confidence 888888777763 4777753 36677755444443333222 1111111001111111122222 100 112 22
Q ss_pred CCCceE-EEEecCCCceEEEeeeCceecccccEEeeccHHHH
Q 016004 148 SETQCS-LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKAL 188 (397)
Q Consensus 148 ~~~~tg-lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l 188 (397)
..+.|+ +=+|||.+.|...-.--|.++..+| +++||+-+
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLi 180 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLI 180 (473)
T ss_pred hhhceEEEEEeccCCccceeeeccccccccee--eecCcEEE
Confidence 334444 5589999999988888888877655 78998743
No 67
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=74.96 E-value=15 Score=29.89 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=37.4
Q ss_pred EEEecCCCceEEEeeeCceecccccEEeecc--------HHHHH--HHHHHHHHhcCCCCCChHHHHHHH-HHhcCcc
Q 016004 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLG--------GKALT--NYLKELVSYRAINVMDETFIIDDV-KEKLCFV 220 (397)
Q Consensus 154 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~g--------G~~l~--~~l~~ll~~~~~~~~~~~~~~~~i-Ke~~~~v 220 (397)
++||+|.+.|.++-...|..-. ...+++| |..++ +.+.+-++. ....+|++ |.+...+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~-------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI-------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT---------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH-------HHHHHHHHhCCeeeEE
Confidence 6899999999999888876655 4558899 99999 777766652 12336666 6665443
No 68
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=73.06 E-value=3.5 Score=39.35 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=20.4
Q ss_pred CceEEEEecCCCceEEEeeeCceecc
Q 016004 150 TQCSLVVDCGFSFTHAAPVFQNFTVN 175 (397)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~ 175 (397)
..++++||+|.++|+|.+|.+|.+..
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeec
Confidence 77899999999999999999999964
No 69
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=70.30 E-value=7.9 Score=36.68 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=55.6
Q ss_pred CCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCc
Q 016004 92 SASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQN 171 (397)
Q Consensus 92 ~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG 171 (397)
.+..++-|.. +-.-..++.+.+-+.+..|++ +-++...-=+.|.+... ..++ ....+++|+|+|.++|.++-+-+|
T Consensus 57 ~~i~~vATsA-~R~A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv-~~~l-~~~~~~lviDIGGGStEl~~~~~~ 132 (285)
T PF02541_consen 57 EKIRAVATSA-LREAKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGV-LSSL-PPDKNGLVIDIGGGSTELILFENG 132 (285)
T ss_dssp SEEEEEEEHH-HHHSTTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHH-HHHS-TTTSSEEEEEEESSEEEEEEEETT
T ss_pred CEEEEEhhHH-HHhCcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHH-Hhhc-cccCCEEEEEECCCceEEEEEECC
Confidence 3344444443 222223466777777888874 44444332222211000 0111 136789999999999999999999
Q ss_pred eecccccEEeeccHHHHHHHHH
Q 016004 172 FTVNYAVKRIDLGGKALTNYLK 193 (397)
Q Consensus 172 ~~~~~~~~~~~~gG~~l~~~l~ 193 (397)
.+... ..+++|.-.+++.+.
T Consensus 133 ~~~~~--~Sl~lG~vrl~e~~~ 152 (285)
T PF02541_consen 133 KVVFS--QSLPLGAVRLTERFF 152 (285)
T ss_dssp EEEEE--EEES--HHHHHHHHS
T ss_pred eeeEe--eeeehHHHHHHHHHh
Confidence 88775 568999988877653
No 70
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=66.43 E-value=5.4 Score=37.42 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=30.2
Q ss_pred ccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCCCC
Q 016004 353 ESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEYSH 395 (397)
Q Consensus 353 ~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 395 (397)
.+|+++||.+.-+|+.+.|+++|... ...+.|..+++|+.
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~ 252 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIY 252 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchH
Confidence 36999999999999999999988532 12455666666653
No 71
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=64.04 E-value=4.9 Score=37.37 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.2
Q ss_pred CceEEEEecCCCceEEEeeeCce
Q 016004 150 TQCSLVVDCGFSFTHAAPVFQNF 172 (397)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~ 172 (397)
..+++.||+|...|+|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 56789999999999999999996
No 72
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=63.16 E-value=7 Score=37.80 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=24.6
Q ss_pred CceEEEEecCCCceEEEeeeCceeccc
Q 016004 150 TQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (397)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (397)
...+|.+|+|.++|.|+||.+|.+...
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CCCEEEEEcCccceeeEEecCCEeeee
Confidence 567999999999999999999998764
No 73
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=62.16 E-value=5.4 Score=38.03 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.5
Q ss_pred HhhccEEEecCccCCCChHHHHHhhcc
Q 016004 350 VLYESIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 350 ~l~~nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
.+-..|+++||.+.-+|+.+.|+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg 264 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILG 264 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhC
Confidence 344579999999999999999999994
No 74
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=61.95 E-value=82 Score=28.19 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=15.6
Q ss_pred EEEECCCccEEEEEeCCCC
Q 016004 5 VVLDNGGGLIKAGHGGERD 23 (397)
Q Consensus 5 vViD~Gs~~ik~G~ag~~~ 23 (397)
++||+|--++|.|+-.++.
T Consensus 2 L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEE-SSEEEEEEEETTE
T ss_pred EEEEECCCeEEEEEEECCE
Confidence 7899999999999987663
No 75
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=58.86 E-value=14 Score=36.88 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=33.0
Q ss_pred hhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCCCC
Q 016004 351 LYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEYSH 395 (397)
Q Consensus 351 l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 395 (397)
+-..|+++||.+.-+||...|++.|....+ ..+|+.+++|++
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~ 422 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIY 422 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccH
Confidence 345899999999999999999999965443 246666777765
No 76
>PRK13317 pantothenate kinase; Provisional
Probab=56.48 E-value=14 Score=35.09 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHhcChh-hHHHhhccEEEec-CccCCCChHHHHHhhccccCCCCccEEEecCCCCCCC
Q 016004 331 GLAECIVRAVNSCHPY-LHSVLYESIILTG-GSTLFPRFAERLERELRPLVPDDYQVKITTQEEYSHP 396 (397)
Q Consensus 331 ~l~~~I~~~i~~~~~d-~r~~l~~nIvltG-G~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~~ 396 (397)
+|..+|.+.|..+..- .|..-.++|+++| |.+..|++.++|.+.++- ...+++.+++|++.
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~ 263 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYS 263 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchh
Confidence 3444444444333211 2333347899999 799999999999987731 13566667777653
No 77
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=55.75 E-value=1.4e+02 Score=27.59 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=15.5
Q ss_pred EEEECCCccEEEEEeCCC
Q 016004 5 VVLDNGGGLIKAGHGGER 22 (397)
Q Consensus 5 vViD~Gs~~ik~G~ag~~ 22 (397)
++||+|--++++|+-.++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987654
No 78
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.13 E-value=66 Score=30.24 Aligned_cols=45 Identities=24% Similarity=0.117 Sum_probs=31.6
Q ss_pred eeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecc
Q 016004 125 LFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVN 175 (397)
Q Consensus 125 v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~ 175 (397)
.++.++-.++.+ ++-++....-+||||+|.++|+..-|-++++..
T Consensus 207 av~mDskfaav~------gal~dpaa~palvVd~GngHttaalvdedRI~g 251 (342)
T COG4012 207 AVAMDSKFAAVM------GALVDPAADPALVVDYGNGHTTAALVDEDRIVG 251 (342)
T ss_pred EEEEcchhHhhh------hcccCcccCceEEEEccCCceEEEEecCCeEEE
Confidence 345555555555 332444466889999999999999998887653
No 79
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=53.34 E-value=11 Score=37.22 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhcc
Q 016004 333 AECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 333 ~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
++.|.+++.+.+.+ ...|++|||++.=+-|.+||++.|.
T Consensus 271 A~sI~~~i~~~~~~-----~~~v~v~GGGa~N~~L~~~L~~~l~ 309 (364)
T PF03702_consen 271 AQSIADAIRRFPPQ-----PDEVYVCGGGARNPFLMERLQERLP 309 (364)
T ss_dssp HHHHHHHHHHH-TT------EEEEEESGGGG-HHHHHHHHHH-T
T ss_pred HHHHHHHHHhcCCC-----CceEEEECCCcCCHHHHHHHHhhCC
Confidence 34455555555443 3579999999999999999999884
No 80
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=47.72 E-value=47 Score=29.16 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=19.4
Q ss_pred cccCCcccCHHHHHHHHHHHhhc
Q 016004 63 PIDRGYLINSDLQRDIWAHLFSS 85 (397)
Q Consensus 63 p~~~g~i~~~d~~e~ll~~~~~~ 85 (397)
-+++|.|.|.+.+.+.++.++.+
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~~ 58 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVEE 58 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHHH
Confidence 37899999999999888888763
No 81
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=45.28 E-value=1.3e+02 Score=28.62 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHH
Q 016004 108 IQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKA 187 (397)
Q Consensus 108 ~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~ 187 (397)
.-+++++.+=+.++++.-.-...+-+|......-+++ ..--.|+|+|.++|+..-+-..--+.. ..+.=+|.-
T Consensus 96 ~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt-----~~PlaIlDmG~GSTDAsii~~~g~v~~--iHlAGAG~m 168 (332)
T PF08841_consen 96 QMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGT-----DKPLAILDMGGGSTDASIINRDGEVTA--IHLAGAGNM 168 (332)
T ss_dssp TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT-------SSEEEEEE-SSEEEEEEE-TTS-EEE--EEEE-SHHH
T ss_pred cHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCC-----CCCeEEEecCCCcccHHHhCCCCcEEE--EEecCCchh
Confidence 3467788888889998777777877777733211111 223478899999999766543322221 223456788
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHh
Q 016004 188 LTNYLKELVSYRAINVMDETFIIDDVKEK 216 (397)
Q Consensus 188 l~~~l~~ll~~~~~~~~~~~~~~~~iKe~ 216 (397)
++..+.+-|- ..+..++|+||.-
T Consensus 169 VTmlI~sELG------l~d~~lAE~IKky 191 (332)
T PF08841_consen 169 VTMLINSELG------LEDRELAEDIKKY 191 (332)
T ss_dssp HHHHHHHHCT-------S-HHHHHHHHHS
T ss_pred hHHHHHHhhC------CCCHHHHHHhhhc
Confidence 8877776553 1355778888874
No 82
>PRK13321 pantothenate kinase; Reviewed
Probab=43.62 E-value=1.5e+02 Score=27.45 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.4
Q ss_pred eEEEECCCccEEEEEeCCC
Q 016004 4 IVVLDNGGGLIKAGHGGER 22 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~ 22 (397)
.+.||+|.-++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4789999999999998754
No 83
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=43.58 E-value=39 Score=26.11 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=33.6
Q ss_pred cCCcccCHHHHHHHHHHHhhcccCCCCCCCeEEEEccCC-CCHHHHHHHHHHhhhhcC
Q 016004 65 DRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLF-ALPSIQRATDELVFEDFN 121 (397)
Q Consensus 65 ~~g~i~~~d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~-~~~~~r~~l~e~lFE~~~ 121 (397)
+.|.+.|+..+++.+..+... | ++..|.-.+.+ +|+. |.+++.+|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~~-l-----Dh~~Lne~~~~~~pT~--E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVDR-L-----DHALLNDVPGLENPTA--ENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHHHh-C-----CCcEeeCCCCCCCCCH--HHHHHHHHHHHh
Confidence 468999999999998876542 2 44444444444 3433 889999998763
No 84
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=43.52 E-value=44 Score=30.66 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=29.6
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+..+++++++-|.||=
T Consensus 85 ~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 85 VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 447899999999899999999999999999985
No 85
>PRK13318 pantothenate kinase; Reviewed
Probab=42.51 E-value=2.8e+02 Score=25.66 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEECCCccEEEEEeCCCCCCeeeeccceeeCCCCcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHHHHhh
Q 016004 5 VVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFS 84 (397)
Q Consensus 5 vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~~~~~ 84 (397)
+.||+|.-++|+|+..+..-..... +........+.+...+..++.
T Consensus 3 L~IDIGnT~iK~al~d~g~i~~~~~----------------------------------~~t~~~~~~~~~~~~l~~l~~ 48 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEGGKLVAHWR----------------------------------ISTDSRRTADEYGVWLKQLLG 48 (258)
T ss_pred EEEEECCCcEEEEEEECCEEEEEEE----------------------------------EeCCCCCCHHHHHHHHHHHHH
Q ss_pred cccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccc-------------------cchhhccccCCCC
Q 016004 85 SLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPS-------------------LVHLYEASRRPYG 145 (397)
Q Consensus 85 ~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~-------------------la~~~~~~~~a~g 145 (397)
..+.++.+-.-+...... +...+.+.+.+-..++.+-++...... ++++...++.
T Consensus 49 -~~~~~~~~i~~I~issVv--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~--- 122 (258)
T PRK13318 49 -LSGLDPEDITGIIISSVV--PSVMHSLERMCRKYFNIEPLVVVGPGVKTGINIKVDNPKEVGADRIVNAVAAYELY--- 122 (258)
T ss_pred -HcCCCcccCceEEEEEec--CchHHHHHHHHHHHhCCCCeEEECCCcCCCCceecCChhhcchHHHHHHHHHHHHc---
Q ss_pred CCCCCceEEEEecCCCceEEEee-eCceec
Q 016004 146 LLSETQCSLVVDCGFSFTHAAPV-FQNFTV 174 (397)
Q Consensus 146 ~~~~~~tglVVDiG~~~t~v~pV-~dG~~~ 174 (397)
....+|||+| +.+++--| -+|.-+
T Consensus 123 ----~~~~ivid~G-TA~t~d~v~~~g~~~ 147 (258)
T PRK13318 123 ----GGPLIVVDFG-TATTFDVVSAKGEYL 147 (258)
T ss_pred ----CCCEEEEEcC-CceEEEEEcCCCcEE
No 86
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=42.34 E-value=46 Score=31.15 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
|.++.+=+++|. .+++||||+.....+.+..+++++++-|.||-
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 445555555553 37899999998888999999999999998874
No 87
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=41.84 E-value=47 Score=31.10 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
|.++.+=+++|. .+++||||+.....+.+..+++++++-|.||-
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 344444444443 47899999999899999999999999998874
No 88
>PRK13324 pantothenate kinase; Reviewed
Probab=41.40 E-value=3e+02 Score=25.71 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.0
Q ss_pred eEEEECCCccEEEEEeCCC
Q 016004 4 IVVLDNGGGLIKAGHGGER 22 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~ 22 (397)
.++||+|--+||.|+..++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 5789999999999987643
No 89
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=41.00 E-value=49 Score=30.90 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=29.1
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.++.+++++++-|.||=
T Consensus 85 ~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 85 ITSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 347899999998888999999999999988874
No 90
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=41.00 E-value=50 Score=30.30 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
|.++.+=+++|. .+++||||+.....+.+..+++++++-|.||-
T Consensus 74 dv~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 344444444443 47899999998888999999999999988874
No 91
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=40.37 E-value=50 Score=30.89 Aligned_cols=33 Identities=12% Similarity=-0.018 Sum_probs=29.3
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+..+++++++-|.||-
T Consensus 85 ~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 85 KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 347899999998888999999999999998874
No 92
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=39.54 E-value=52 Score=30.82 Aligned_cols=33 Identities=12% Similarity=-0.031 Sum_probs=29.2
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+..+++++++-|.||-
T Consensus 85 ~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 85 QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 347899999998888999999999999988874
No 93
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=39.17 E-value=55 Score=30.49 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=29.3
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+..+++++++-|.||=
T Consensus 85 ~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 85 VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 347899999999888999999999999988874
No 94
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=38.23 E-value=58 Score=29.93 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=29.3
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..++.||||+.....+.+..+++++++-|.||-
T Consensus 85 ~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 85 VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 447899999998888999999999999998874
No 95
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=38.23 E-value=55 Score=30.63 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
|.++.+=+++| ..+++||||+.....+.+...++++++-|.||-
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34444444444 347899999999889999999999999988874
No 96
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=38.16 E-value=6.4 Score=36.89 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCC
Q 016004 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPD 381 (397)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~ 381 (397)
|.+.+...+.+...... .|+++||...-..+.+.|.+.|.+.++.
T Consensus 206 la~~i~~~~~~~~~~~~-----~v~l~GGv~~~~~~~~~l~~~l~~~~~~ 250 (271)
T PF01869_consen 206 LAELIKAVLKRLGPEKE-----PVVLSGGVFKNSPLVKALRDALKEKLPK 250 (271)
T ss_dssp HHHHHHHHHHTCTCCCC-----SEEEESGGGGCHHHHHHHGGGS-HHHHC
T ss_pred HHHHHHHHHHhcCCCCC-----eEEEECCccCchHHHHHHHHHHHHhcCC
Confidence 56666666666644321 2999999999888888888888777664
No 97
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=38.05 E-value=58 Score=29.98 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=29.2
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+..+++++++-|.||-
T Consensus 85 ~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 85 VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 347899999998889999999999999998875
No 98
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=38.02 E-value=57 Score=30.50 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=29.4
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+...++++++-|.||-
T Consensus 85 ~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 85 EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 458899999999899999999999999988874
No 99
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=37.78 E-value=58 Score=30.47 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=29.4
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+...++++++-|.||-
T Consensus 87 ~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 87 KTSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999988874
No 100
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=37.69 E-value=60 Score=30.31 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
|.++.+=+++| ..+++||||+.....+.+..+++++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 34444444555 347899999998888999999999999988874
No 101
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=36.20 E-value=63 Score=30.34 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=29.1
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+..+++++++-|.||-
T Consensus 85 ~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 85 VASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 347899999998888999999999999988875
No 102
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=35.86 E-value=68 Score=29.44 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
|.++.+=+++|. .++.||||+.....+.+..+++++++-+.||-
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd 117 (226)
T cd08558 74 DVIEAIKEYAFV------TSPYPVILSLENHCSLEQQKKMAQILKEIFGD 117 (226)
T ss_pred HHHHHHHHHhcc------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 344444444543 37999999999899999999999999998874
No 103
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=34.07 E-value=91 Score=29.13 Aligned_cols=45 Identities=27% Similarity=0.194 Sum_probs=30.5
Q ss_pred CceEEEEecCCCceEEEeeeCceecc--cccEEeeccHHHHHHHHHHH
Q 016004 150 TQCSLVVDCGFSFTHAAPVFQNFTVN--YAVKRIDLGGKALTNYLKEL 195 (397)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~dG~~~~--~~~~~~~~gG~~l~~~l~~l 195 (397)
....+|||+|.++|..+.|.+|++.. .. .+..+....|..++.++
T Consensus 166 ~~~~~~vniGN~HTlaa~v~~~rI~GvfEH-HT~~l~~~kL~~~l~~l 212 (254)
T PF08735_consen 166 REGIIVVNIGNGHTLAALVKDGRIYGVFEH-HTGMLTPEKLEEYLERL 212 (254)
T ss_pred cCCeEEEEeCCccEEEEEEeCCEEEEEEec-ccCCCCHHHHHHHHHHH
Confidence 56779999999999999999998854 11 11234445555554444
No 104
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=33.46 E-value=76 Score=29.66 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=29.0
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..++.||||+.....+.+..+++++++-|.||-
T Consensus 85 ~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 85 VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 347899999998888999999999999888875
No 105
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=31.52 E-value=81 Score=29.58 Aligned_cols=44 Identities=20% Similarity=0.119 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCC-CHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFA-LPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~-~~~~r~~l~e~lFE~~~v 122 (397)
|.++.+=+++|. .++.||||+..... +.++.+++++++-|.||-
T Consensus 76 dv~~~I~~~AF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAFK------TSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 344444455553 37999999977666 788999999999999985
No 106
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=31.38 E-value=3.9e+02 Score=25.00 Aligned_cols=139 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCCcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHH
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~ 80 (397)
| +++.+|+|..+++++....+.-... ...+..|-....-.=.+.+.+++.
T Consensus 1 ~-~~lgvdig~~~i~~~l~dl~g~i~~-----------------------------~~~~~~~~~~~~~~~~~~i~~~i~ 50 (291)
T PRK05082 1 M-TTLAIDIGGTKIAAALVGEDGQIRQ-----------------------------RRQIPTPASQTPEALRQALSALVS 50 (291)
T ss_pred C-cEEEEEECCCEEEEEEEcCCCcEEE-----------------------------EEEecCCCCCCHHHHHHHHHHHHH
Q ss_pred HHhhcccCCC-----CCCCeEEEEccCCCCHHHHHH-HHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEE
Q 016004 81 HLFSSLLHIS-----PSASSLLLTEPLFALPSIQRA-TDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSL 154 (397)
Q Consensus 81 ~~~~~~l~~~-----~~~~pvll~e~~~~~~~~r~~-l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tgl 154 (397)
+...+..++. +-+........+.+...++.. +.+.+=+.|++| +++.++.-++++.+....+.+ ..+-+
T Consensus 51 ~~~~~~~~igi~~pG~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~----~~~~~ 125 (291)
T PRK05082 51 PLQAQADRVAVASTGIINDGILTALNPHNLGGLLHFPLVQTLEQLTDLP-TIALNDAQAAAWAEYQALPDD----IRNMV 125 (291)
T ss_pred HhhhcCcEEEEeCcccccCCeeEEecCCCCccccCCChHHHHHHHhCCC-EEEECcHHHHHHHHHHhcCCC----CCCEE
Q ss_pred EEecCCCceEEEeeeCceecc
Q 016004 155 VVDCGFSFTHAAPVFQNFTVN 175 (397)
Q Consensus 155 VVDiG~~~t~v~pV~dG~~~~ 175 (397)
.|.+| ..+-..-|++|.++.
T Consensus 126 ~l~ig-~GiG~giv~~G~~~~ 145 (291)
T PRK05082 126 FITVS-TGVGGGIVLNGKLLT 145 (291)
T ss_pred EEEEC-CCcceEEEECCEEee
No 107
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=30.50 E-value=89 Score=29.28 Aligned_cols=44 Identities=20% Similarity=0.108 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCC-CHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFA-LPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~-~~~~r~~l~e~lFE~~~v 122 (397)
|.++.+=+++| ..+++||||+..... ..++.+++++++-|.||-
T Consensus 76 dv~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd 120 (258)
T cd08623 76 EVIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 34444444554 347899999987777 589999999999998885
No 108
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=27.25 E-value=99 Score=29.00 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCC-CHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFA-LPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~-~~~~r~~l~e~lFE~~~v 122 (397)
|.++.+=+++| ..+++||||+..... +.+..++|++++-|.||-
T Consensus 76 dv~~~I~~~aF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAF------KTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 33444444454 337899999987777 688999999999888875
No 109
>PRK13326 pantothenate kinase; Reviewed
Probab=25.03 E-value=5.7e+02 Score=23.90 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=17.8
Q ss_pred CeEEEECCCccEEEEEeCCCC
Q 016004 3 NIVVLDNGGGLIKAGHGGERD 23 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~ 23 (397)
..++||+|--++|+|+..++.
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 468999999999999987653
No 110
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=24.80 E-value=66 Score=31.81 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.1
Q ss_pred ccEEEecCccCCCChHHHHHhhc
Q 016004 353 ESIILTGGSTLFPRFAERLEREL 375 (397)
Q Consensus 353 ~nIvltGG~s~i~G~~~RL~~eL 375 (397)
..|++|||++.=|-|.+||+++|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999999988
No 111
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=24.64 E-value=1.4e+02 Score=27.42 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=30.7
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeee
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFV 127 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~ 127 (397)
..++.||||+.....+.+...++++++-+.|| ..++.
T Consensus 85 ~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lG-d~L~~ 121 (228)
T cd08599 85 TASEYPVIITLENHLSPELQAKAAQILRETLG-DKLFY 121 (228)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHh-hhhcc
Confidence 34789999998888888999999999999998 34544
No 112
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=21.88 E-value=2.5e+02 Score=28.24 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcChhhHHH-----hhccEEEecCccCCCChHHHHHhhcc
Q 016004 332 LAECIVRAVNSCHPYLHSV-----LYESIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~-----l~~nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
|.+.|.++++.++.+++.. +-+.|+||||+|++||+.+.+++.+.
T Consensus 304 i~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~ 353 (420)
T PRK09472 304 LLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH 353 (420)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC
Confidence 4456666666666655543 44569999999999999999998874
No 113
>PLN02230 phosphoinositide phospholipase C 4
Probab=21.54 E-value=1.4e+02 Score=31.69 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+...++++++-+.||-
T Consensus 198 ~~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 198 AISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred CCCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 447899999998889999999999999988874
No 114
>PLN02952 phosphoinositide phospholipase C
Probab=21.41 E-value=1.5e+02 Score=31.47 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.++..++++++-|.||-
T Consensus 207 ~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 207 SSSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 347899999998888999999999999988875
No 115
>PLN02222 phosphoinositide phospholipase C 2
Probab=21.14 E-value=1.3e+02 Score=31.64 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=29.8
Q ss_pred CCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 89 ISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 89 ~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
...+++||||+.....+.+...++++++-|.||-
T Consensus 186 F~~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 186 FDVSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred ccCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 3457899999998888999999999999998885
No 116
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=20.39 E-value=2.8e+02 Score=20.84 Aligned_cols=46 Identities=20% Similarity=-0.040 Sum_probs=27.3
Q ss_pred EEEEecCCCceEEEee-eCceecccccEEeeccHHHHHHHHHHHHHh
Q 016004 153 SLVVDCGFSFTHAAPV-FQNFTVNYAVKRIDLGGKALTNYLKELVSY 198 (397)
Q Consensus 153 glVVDiG~~~t~v~pV-~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~ 198 (397)
-|-||+|.+.+.++-+ -+|..+........-++..+-..+.+++.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~ 49 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKK 49 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHHH
Confidence 4789999888887776 466666543222222344555555555554
No 117
>PLN02223 phosphoinositide phospholipase C
Probab=20.10 E-value=1.7e+02 Score=30.54 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
+.++.+=+|+|. .++++||||+.....+.+...++++++-|.||=
T Consensus 179 ~vl~aI~~~AF~-----~s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFT-----KCRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhh-----cCCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 344444445553 234899999998888999999999999988874
No 118
>PLN02228 Phosphoinositide phospholipase C
Probab=20.06 E-value=1.6e+02 Score=30.98 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 90 SPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 90 ~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
..+++||||+.....+.+...+|++++-|.||-
T Consensus 190 ~~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~ 222 (567)
T PLN02228 190 QVSDYPVVITLEDHLPPNLQAQVAKMLTKTFRG 222 (567)
T ss_pred cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhH
Confidence 347899999998888999999999999988874
Done!