Query 016004
Match_columns 397
No_of_seqs 120 out of 1325
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 06:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_A Actin-related protein 3 100.0 1.6E-68 5.4E-73 533.3 19.6 329 2-395 5-384 (427)
2 3qb0_A Actin-related protein 4 100.0 1.5E-66 5.2E-71 524.2 30.7 316 3-391 24-452 (498)
3 1k8k_B ARP2, actin-like protei 100.0 1.2E-62 4.1E-67 488.2 17.4 323 3-396 7-353 (394)
4 2fxu_A Alpha-actin-1, actin, a 100.0 1.3E-60 4.5E-65 470.8 30.3 323 2-395 5-337 (375)
5 4fo0_A Actin-related protein 8 100.0 5E-61 1.7E-65 500.7 24.6 371 2-395 15-552 (593)
6 1k8k_A ARP3, actin-like protei 100.0 1.2E-56 4.1E-61 448.7 30.2 334 2-396 5-376 (418)
7 4am6_A Actin-like protein ARP8 100.0 9E-48 3.1E-52 390.6 21.0 304 2-381 40-530 (655)
8 1jce_A ROD shape-determining p 100.0 5E-32 1.7E-36 263.5 20.9 292 1-376 2-302 (344)
9 2v7y_A Chaperone protein DNAK; 99.8 1E-19 3.4E-24 185.8 14.5 290 1-376 1-327 (509)
10 3h1q_A Ethanolamine utilizatio 99.8 2.1E-18 7.3E-23 161.6 17.2 168 3-218 29-197 (272)
11 1dkg_D Molecular chaperone DNA 99.8 6.8E-19 2.3E-23 173.2 12.1 292 1-376 1-358 (383)
12 3qfu_A 78 kDa glucose-regulate 99.7 6.4E-17 2.2E-21 159.4 18.6 184 2-198 18-256 (394)
13 3i33_A Heat shock-related 70 k 99.6 2.3E-15 7.9E-20 148.9 16.4 183 2-197 23-263 (404)
14 1yuw_A Heat shock cognate 71 k 99.5 1.3E-13 4.3E-18 141.9 18.3 187 1-198 3-243 (554)
15 2kho_A Heat shock protein 70; 99.5 7.3E-14 2.5E-18 145.1 13.7 292 1-376 1-358 (605)
16 2fsj_A Hypothetical protein TA 99.4 2.1E-13 7E-18 132.3 10.3 176 4-199 23-240 (346)
17 2ych_A Competence protein PILM 99.4 3.1E-12 1E-16 125.2 18.2 179 106-376 150-331 (377)
18 4gni_A Putative heat shock pro 99.4 1.7E-12 5.8E-17 128.6 13.8 121 73-198 129-255 (409)
19 3d2f_A Heat shock protein homo 99.4 1.4E-12 4.9E-17 136.8 13.3 191 1-198 1-247 (675)
20 4b9q_A Chaperone protein DNAK; 99.3 3.3E-11 1.1E-15 125.2 16.1 188 1-198 1-242 (605)
21 4a2a_A Cell division protein F 99.2 1.3E-09 4.5E-14 108.0 20.4 100 105-220 166-266 (419)
22 4apw_A ALP12; actin-like prote 99.1 1.3E-10 4.5E-15 111.7 7.8 175 4-198 9-219 (329)
23 3js6_A Uncharacterized PARM pr 98.9 1.7E-09 5.8E-14 104.9 8.1 181 3-199 5-232 (355)
24 2zgy_A Plasmid segregation pro 98.8 1.3E-08 4.6E-13 97.2 11.6 92 118-216 136-229 (320)
25 2d0o_A DIOL dehydratase-reacti 97.2 0.0015 5E-08 65.4 10.2 62 151-221 407-468 (610)
26 1nbw_A Glycerol dehydratase re 97.1 0.0015 5.1E-08 65.5 8.8 62 151-221 409-470 (607)
27 3mdq_A Exopolyphosphatase; str 91.6 0.34 1.2E-05 45.5 7.0 77 109-192 91-170 (315)
28 1t6c_A Exopolyphosphatase; alp 91.1 0.54 1.8E-05 44.1 7.8 81 108-193 98-178 (315)
29 1u6z_A Exopolyphosphatase; alp 90.7 0.98 3.4E-05 45.4 9.7 79 109-192 98-176 (513)
30 3cer_A Possible exopolyphospha 89.5 0.55 1.9E-05 44.6 6.4 79 109-192 104-191 (343)
31 3hi0_A Putative exopolyphospha 89.1 0.98 3.3E-05 45.3 8.3 77 109-191 102-178 (508)
32 3cet_A Conserved archaeal prot 86.5 0.47 1.6E-05 44.7 3.7 25 151-175 127-151 (334)
33 4ehu_A Activator of 2-hydroxyi 84.2 0.42 1.4E-05 43.6 2.2 39 348-394 203-241 (276)
34 2h3g_X Biosynthetic protein; p 79.1 19 0.00066 32.5 11.5 19 4-22 2-20 (268)
35 3r8e_A Hypothetical sugar kina 79.1 39 0.0013 31.0 14.2 57 114-176 111-169 (321)
36 3bex_A Type III pantothenate k 72.1 53 0.0018 29.2 12.3 19 4-22 5-23 (249)
37 3djc_A Type III pantothenate k 68.3 49 0.0017 29.8 11.2 22 1-22 1-22 (266)
38 3aap_A Ectonucleoside triphosp 46.9 13 0.00044 35.2 3.5 36 150-185 139-176 (353)
39 2ews_A Pantothenate kinase; PA 43.1 11 0.00036 34.7 2.2 39 352-395 237-276 (287)
40 4db3_A Glcnac kinase, N-acetyl 34.4 1.2E+02 0.0041 27.7 8.1 133 4-175 26-170 (327)
41 1zbs_A Hypothetical protein PG 34.0 2.5E+02 0.0086 24.9 10.3 70 95-175 62-133 (291)
42 4htl_A Beta-glucoside kinase; 33.8 58 0.002 29.4 5.7 50 332-390 225-274 (297)
43 2qm1_A Glucokinase; alpha-beta 33.7 74 0.0025 28.9 6.5 55 116-176 104-159 (326)
44 1hux_A Activator of (R)-2-hydr 30.4 14 0.00048 33.3 0.8 24 353-376 210-233 (270)
45 3qbx_A Anhydro-N-acetylmuramic 27.5 33 0.0011 32.6 2.8 37 334-375 271-307 (371)
46 2e2o_A Hexokinase; acetate and 25.1 3.5E+02 0.012 23.8 9.9 62 95-172 62-123 (299)
47 1zc6_A Probable N-acetylglucos 24.5 3.6E+02 0.012 23.9 9.5 128 3-175 12-146 (305)
48 2ch5_A NAGK protein; transfera 23.7 3.8E+02 0.013 24.2 9.6 88 72-172 49-142 (347)
49 3cqy_A Anhydro-N-acetylmuramic 23.1 37 0.0013 32.3 2.2 36 334-375 278-313 (370)
50 2i7n_A Pantothenate kinase 1; 22.4 88 0.003 29.5 4.7 46 331-376 284-331 (360)
51 1djx_A PLC-D1, phosphoinositid 21.0 66 0.0022 32.8 3.8 44 73-122 236-279 (624)
52 3djc_A Type III pantothenate k 20.7 1.8E+02 0.006 26.0 6.3 48 154-201 5-53 (266)
No 1
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-68 Score=533.32 Aligned_cols=329 Identities=26% Similarity=0.427 Sum_probs=275.9
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC------------------------------CcccCCccccccc
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS------------------------------KKFIHPSPTAASA 51 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~------------------------------~~~~~G~~~~~~~ 51 (397)
+++||||+||+++|+||||++.|+++|||++++++.. +++++|+++. .
T Consensus 5 ~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~--~ 82 (427)
T 3dwl_A 5 NVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDAL--K 82 (427)
T ss_dssp CSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHH--H
T ss_pred CCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHh--h
Confidence 4799999999999999999999999999999987632 2567899887 3
Q ss_pred ccccccceeeCcccCCcccCHHHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeeccc
Q 016004 52 TEDLTSAAVRRPIDRGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPP 131 (397)
Q Consensus 52 ~~~~~~~~~~~p~~~g~i~~~d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~ 131 (397)
.. ...+.+++|+++|.|.|||.+|.+|+|+|.+.|+++|.++||||+||+++++..|++++|++||+|++|++|++.++
T Consensus 83 ~~-~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~ 161 (427)
T 3dwl_A 83 KA-SAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQA 161 (427)
T ss_dssp TH-HHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHH
T ss_pred Cc-ccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchH
Confidence 33 23678999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred ccchhhccccCCCCCC----CCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChH
Q 016004 132 SLVHLYEASRRPYGLL----SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDET 207 (397)
Q Consensus 132 ~la~~~~~~~~a~g~~----~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~ 207 (397)
++|+| ++|.. ....||+|||+|++.|+|+||++|+++.+++.++++||++++++|.++|+.+++. ..+.
T Consensus 162 vla~~------a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~-~~~~ 234 (427)
T 3dwl_A 162 VLALA------ASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP-DSSL 234 (427)
T ss_dssp HHHHH------GGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC---------C
T ss_pred HHHHH------hcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC-chhH
Confidence 99999 76621 1257999999999999999999999999999999999999999999999988776 4456
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHhcCCCCcceeEEec--CCCcccccccccCcchhhhhcccCCCCCCCCCccccccc
Q 016004 208 FIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVL--PDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMD 285 (397)
Q Consensus 208 ~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~l--~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 285 (397)
++++++||++|||+.|+.+++...... ....+.|.+ |||.
T Consensus 235 ~~~~~IKe~~cyv~~d~~~e~~~~~~~---~~~~~~~~l~~~~g~----------------------------------- 276 (427)
T 3dwl_A 235 KTAERIKEECCYVCPDIVKEFSRFDRE---PDRYLKYASESITGH----------------------------------- 276 (427)
T ss_dssp HHHHHHHHHHCCCCSCHHHHHHHTTC--------CCBCC-----------------------------------------
T ss_pred HHHHHHHHhcCcccCCHHHHHHHhhcC---ccccceeEeeCCCCC-----------------------------------
Confidence 889999999999999998887653211 001222333 3332
Q ss_pred hhhHHHHhhhhhcccCCccEEEecccccccccccccCCCCCCC-CCChHHHHHHHHHhcChhhHHHhhccEEEecCccCC
Q 016004 286 RTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMN-QAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLF 364 (397)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i 364 (397)
.+.+.++.|||.+||+||+|++++.+ ..+|+++|.++|++||+|+|++|++|||||||+|++
T Consensus 277 -----------------~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~ 339 (427)
T 3dwl_A 277 -----------------STTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339 (427)
T ss_dssp --------------------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCS
T ss_pred -----------------eeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCC
Confidence 12688999999999999999999888 489999999999999999999999999999999999
Q ss_pred CChHHHHHhhccccC--------------CCCccEEEecCCCCCC
Q 016004 365 PRFAERLERELRPLV--------------PDDYQVKITTQEEYSH 395 (397)
Q Consensus 365 ~G~~~RL~~eL~~~~--------------p~~~~~~v~~~~~~~~ 395 (397)
|||.+||++||+.++ |..++++|+++++|.+
T Consensus 340 ~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~ 384 (427)
T 3dwl_A 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384 (427)
T ss_dssp TTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTT
T ss_pred CChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCcccc
Confidence 999999999999887 5678899999999876
No 2
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-66 Score=524.19 Aligned_cols=316 Identities=22% Similarity=0.373 Sum_probs=281.6
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC--CcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWA 80 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~--~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~ 80 (397)
++||||+||++||+||+|++.|+++|||++++++.. +.+++|+++. .. ....+.+++|+++|.|.|||.+|.+|+
T Consensus 24 ~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~~~~~~vG~e~~--~~-~r~~l~l~~Pi~~GvI~dwd~~E~iw~ 100 (498)
T 3qb0_A 24 SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSI--GI-PRKDYELKPIIENGLVIDWDTAQEQWQ 100 (498)
T ss_dssp SCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCSSCCEECCTTGG--GS-CCTTEEEEESEETTEESCHHHHHHHHH
T ss_pred CeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCCCccEEEecHHH--hc-CcCceEEeccCcCCEEccHHHHHHHHH
Confidence 689999999999999999999999999999998753 5677898733 12 235789999999999999999999999
Q ss_pred HHhhcccCCCCCCC-eEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecC
Q 016004 81 HLFSSLLHISPSAS-SLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCG 159 (397)
Q Consensus 81 ~~~~~~l~~~~~~~-pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG 159 (397)
|+|.+.|++++.++ ||||++|+++++..|++++|++||.|++|++|++.+++|++| ++| ..||+|||+|
T Consensus 101 ~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlaly------a~G----~~tglVVDiG 170 (498)
T 3qb0_A 101 WALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSF------AAG----RPNCLVVDIG 170 (498)
T ss_dssp HHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHH------HHT----CSSEEEEEEC
T ss_pred HHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHH------HcC----CCeEEEEEcC
Confidence 99998999999999 999999999999999999999999999999999999999999 999 8999999999
Q ss_pred CCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcC------------------CCCCC---------hHHHHHH
Q 016004 160 FSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRA------------------INVMD---------ETFIIDD 212 (397)
Q Consensus 160 ~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~------------------~~~~~---------~~~~~~~ 212 (397)
++.|+|+||++|+++.+++.++++||++++++|.++|+.++ +.+.. +.+++++
T Consensus 171 ~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~ 250 (498)
T 3qb0_A 171 HDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQE 250 (498)
T ss_dssp SSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHH
T ss_pred CCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998642 22211 2347899
Q ss_pred HHHhcCccccC--HHHHHHHHHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHH
Q 016004 213 VKEKLCFVSLD--VARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVM 290 (397)
Q Consensus 213 iKe~~~~v~~d--~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 290 (397)
+||++|||+.+ +.++.... .....+.|+||||+
T Consensus 251 iKE~~c~Va~~~~~~~~~~~~-----~~~~~~~yeLPDG~---------------------------------------- 285 (498)
T 3qb0_A 251 CKETLCHICPTKTLEETKTEL-----SSTAKRSIESPWNE---------------------------------------- 285 (498)
T ss_dssp HHHHTCCCCSSCHHHHHHHHH-----HTCCCEEEECSSSC----------------------------------------
T ss_pred HHHhhEEecCCccHhHHhhhc-----cCcCceEEECCCCC----------------------------------------
Confidence 99999999997 44432211 12346789999998
Q ss_pred HHhhhhhcccCCccEEEeccc-ccccccccccCCCCCC------------------------------------------
Q 016004 291 EEARDRKRADLAKNEFDLTNE-RFLVPEMIFQPADLGM------------------------------------------ 327 (397)
Q Consensus 291 ~~l~~~~~~~~~~~~i~i~~e-r~~~~E~lF~p~~~~~------------------------------------------ 327 (397)
.|.+++| ||.|||+||+|+++|.
T Consensus 286 --------------~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 351 (498)
T 3qb0_A 286 --------------EIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEE 351 (498)
T ss_dssp --------------EEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBCC----------------
T ss_pred --------------EEEECchHhhhCchhhCCHhHcCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999 9999999999987643
Q ss_pred --------------------------------------CCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHH
Q 016004 328 --------------------------------------NQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAE 369 (397)
Q Consensus 328 --------------------------------------~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~ 369 (397)
+..||+++|.++|.+||.|+|+.||+||||+||++++|||.+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~ 431 (498)
T 3qb0_A 352 KEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSD 431 (498)
T ss_dssp -------------------------------------CCSCCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHH
Confidence 557899999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCccEEEecCC
Q 016004 370 RLERELRPLVPDDYQVKITTQE 391 (397)
Q Consensus 370 RL~~eL~~~~p~~~~~~v~~~~ 391 (397)
||++||+.++| .++++|+++.
T Consensus 432 Rl~~El~~l~p-~~~i~v~~~~ 452 (498)
T 3qb0_A 432 RLMTELNKILP-SLKFRILTTG 452 (498)
T ss_dssp HHHHHHHHHST-TSCCCEECCS
T ss_pred HHHHHHHHhCC-CCeeEEEcCC
Confidence 99999999999 8899999983
No 3
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=1.2e-62 Score=488.21 Aligned_cols=323 Identities=29% Similarity=0.543 Sum_probs=160.3
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC----------CcccCCcccccccccccccceeeCcccCCcccCH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS----------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINS 72 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~----------~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~ 72 (397)
++||||+||+++|+||+|++.|++++||++++++.. +.+++|+++. .+. ....+++|+++|.|.||
T Consensus 7 ~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~--~~~--~~~~~~~Pi~~G~i~dw 82 (394)
T 1k8k_B 7 KVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEAS--ELR--SMLEVNYPMENGIVRNW 82 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHH--hcC--CCceeeccccCCEEecH
Confidence 789999999999999999999999999999987542 3567899987 442 45788999999999999
Q ss_pred HHHHHHHHHHh-hcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCc
Q 016004 73 DLQRDIWAHLF-SSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQ 151 (397)
Q Consensus 73 d~~e~ll~~~~-~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~ 151 (397)
|.+|.+|+|+| .+.|+++++++|++|++|++++...|+++++++||.|++|++++++++++|+| ++| ..
T Consensus 83 d~~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~------a~g----~~ 152 (394)
T 1k8k_B 83 DDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLY------AQG----LL 152 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHH------hCC----Cc
Confidence 99999999999 78899999999999999999999999999999999999999999999999999 999 89
Q ss_pred eEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCC--ChHHHHHHHHHhcCccccCHHHHHH
Q 016004 152 CSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFVSLDVARDLQ 229 (397)
Q Consensus 152 tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~~~v~~d~~~~~~ 229 (397)
+|+|||+|++.|+|+||++|+++.+++.++++||+++|++|.++|..+++++. .+...++++|+++||++.++..+++
T Consensus 153 ~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~ 232 (394)
T 1k8k_B 153 TGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQK 232 (394)
T ss_dssp -CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHH
T ss_pred eEEEEEcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999888775 4668899999999999999887766
Q ss_pred HHHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEec
Q 016004 230 IARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLT 309 (397)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~ 309 (397)
.... .......|.+||+. .+.++
T Consensus 233 ~~~~---~~~~~~~~~lpdg~------------------------------------------------------~i~i~ 255 (394)
T 1k8k_B 233 LALE---TTVLVESYTLPDGR------------------------------------------------------IIKVG 255 (394)
T ss_dssp HHHH---CSTTCEEEECTTSC------------------------------------------------------EEEEC
T ss_pred hhcc---CCcCceEEECCCCC------------------------------------------------------EEEEC
Confidence 5432 22335678899887 78999
Q ss_pred ccccccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccC----------
Q 016004 310 NERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLV---------- 379 (397)
Q Consensus 310 ~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~---------- 379 (397)
.|||.+||+||+|++++.+..+|+++|.++|.+||+|+|++|++||+||||+|++|||.+||++||..++
T Consensus 256 ~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~ 335 (394)
T 1k8k_B 256 GERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVE 335 (394)
T ss_dssp THHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCC
T ss_pred chhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccC
Confidence 9999999999999999989999999999999999999999999999999999999999999999999888
Q ss_pred -CCCccEEEecCCCCCCC
Q 016004 380 -PDDYQVKITTQEEYSHP 396 (397)
Q Consensus 380 -p~~~~~~v~~~~~~~~~ 396 (397)
|..++++|+++++|.+.
T Consensus 336 ~p~~~~v~v~~~~~~~~~ 353 (394)
T 1k8k_B 336 KLSKFKIRIEDPPRRKHM 353 (394)
T ss_dssp TTCCCCC-----------
T ss_pred CCCceEEEEecCCCccee
Confidence 88889999999888764
No 4
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=1.3e-60 Score=470.82 Aligned_cols=323 Identities=31% Similarity=0.592 Sum_probs=294.2
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC--------CcccCCcccccccccccccceeeCcccCCcccCHH
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS--------KKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSD 73 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~--------~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d 73 (397)
.++||||+||+++|+||+|++.|++++||++++++.. +.+++|+++. ... ....+++|+++|.|.|||
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~--~~~--~~~~~~~Pi~~G~i~d~d 80 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ--SKR--GILTLKYPIEHGIITNWD 80 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHH--HHT--TSEEEECSEETTEECCHH
T ss_pred CceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHh--hcC--cccceeccccCCcccCHH
Confidence 4789999999999999999999999999999987653 3567888877 332 457899999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceE
Q 016004 74 LQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCS 153 (397)
Q Consensus 74 ~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tg 153 (397)
.+|.+|+|+|.+.|++++.++|+++++|++++...|+++++++||.|++|+++++++|++|+| ++| ..+|
T Consensus 81 ~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~------a~g----~~~~ 150 (375)
T 2fxu_A 81 DMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY------ASG----RTTG 150 (375)
T ss_dssp HHHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHH------HTT----CSSE
T ss_pred HHHHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeee------ecC----CCeE
Confidence 999999999988899999999999999999999999999999999999999999999999999 999 8999
Q ss_pred EEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCC--hHHHHHHHHHhcCccccCHHHHHHHH
Q 016004 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMD--ETFIIDDVKEKLCFVSLDVARDLQIA 231 (397)
Q Consensus 154 lVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~--~~~~~~~iKe~~~~v~~d~~~~~~~~ 231 (397)
+|||+|++.|+|+||++|+++.++..++++||+++|++|.++|..+++++.. +...++++|+++||++.++.+++.+.
T Consensus 151 lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~ 230 (375)
T 2fxu_A 151 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATA 230 (375)
T ss_dssp EEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHH
T ss_pred EEEEcCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhh
Confidence 9999999999999999999999998999999999999999999998877653 45789999999999999988876654
Q ss_pred HhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEeccc
Q 016004 232 RKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNE 311 (397)
Q Consensus 232 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~e 311 (397)
.. .......|.+||+. .+.++.|
T Consensus 231 ~~---~~~~~~~~~lpdg~------------------------------------------------------~i~i~~e 253 (375)
T 2fxu_A 231 AS---SSSLEKSYELPDGQ------------------------------------------------------VITIGNE 253 (375)
T ss_dssp HH---CSTTCEEEECTTSC------------------------------------------------------EEEESTH
T ss_pred cc---cCccCeEEECCCCC------------------------------------------------------EEEEChh
Confidence 42 12235678888876 7899999
Q ss_pred ccccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCC
Q 016004 312 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE 391 (397)
Q Consensus 312 r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~ 391 (397)
||.+||.||+|.+++.+..+|.++|.++|++||+|+|+.+++||+||||+|++|||.+||++||..+.|...+++|+.++
T Consensus 254 rf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~ 333 (375)
T 2fxu_A 254 RFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 333 (375)
T ss_dssp HHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCT
T ss_pred heechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCC
Confidence 99999999999998888999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCCC
Q 016004 392 EYSH 395 (397)
Q Consensus 392 ~~~~ 395 (397)
+|.+
T Consensus 334 ~p~~ 337 (375)
T 2fxu_A 334 ERKY 337 (375)
T ss_dssp TTTS
T ss_pred CCCc
Confidence 9876
No 5
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5e-61 Score=500.70 Aligned_cols=371 Identities=17% Similarity=0.249 Sum_probs=261.5
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCC--------------------------------------------
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-------------------------------------------- 37 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~-------------------------------------------- 37 (397)
|++||||+||+++|+|||||+.|+ .||++++++..
T Consensus 15 ~~iIVIdpGS~~~riG~A~d~~P~-~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (593)
T 4fo0_A 15 NFIIVIHPGSTTLRIGRATDTLPA-SIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSN 93 (593)
T ss_dssp GGEEEEECCSSEEEEEETTCSSCE-EEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred CCEEEEeCCCCCeEeeecCCCCCC-eeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence 458999999999999999999996 57999998532
Q ss_pred -------------------------------------CCcccCCcccccccccccccceeeCcccCC-----------cc
Q 016004 38 -------------------------------------SKKFIHPSPTAASATEDLTSAAVRRPIDRG-----------YL 69 (397)
Q Consensus 38 -------------------------------------~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g-----------~i 69 (397)
.+++++|++++ ...+...+.++|||++| .+
T Consensus 94 ~~r~~~~s~~~~~~~n~~~~p~~i~~~~~~~~~~~~~~~~~~vG~~al--~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~ 171 (593)
T 4fo0_A 94 GTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVGEEAL--YVNPLDCYNIHWPIRRGQLNIHPGPGGSLT 171 (593)
T ss_dssp SCCCCCCCHHHHHHHHTTCCCEEEESSCSCCCCCCTTCCSEEETHHHH--TSCTTSSEEEECSEETTEECCCSSTTCSHH
T ss_pred ccccCCCcHHHhhhhhccCCCcccCCCCccccccccccccccccHHHh--hcCCcccceEecCcccCccccccCCccchh
Confidence 12467788887 45555678999999999 57
Q ss_pred cCHHHHHHHHHHHhhcccCCCCCC---CeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCC
Q 016004 70 INSDLQRDIWAHLFSSLLHISPSA---SSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGL 146 (397)
Q Consensus 70 ~~~d~~e~ll~~~~~~~l~~~~~~---~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~ 146 (397)
.+|+++|++|+|+|.+.|++++++ +|+||++|+++++..|++|+++|||+|++|++|++.+++||+| |+|
T Consensus 172 ~~wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~y------a~G- 244 (593)
T 4fo0_A 172 AVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATY------GSG- 244 (593)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHH------HHT-
T ss_pred cCHHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHH------HCC-
Confidence 899999999999999999998865 8999999999999999999999999999999999999999999 999
Q ss_pred CCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCC-------hHHHHHHHHHhcCc
Q 016004 147 LSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMD-------ETFIIDDVKEKLCF 219 (397)
Q Consensus 147 ~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~-------~~~~~~~iKe~~~~ 219 (397)
.+||||||+|++.|+|+||+||+++.+++.++++||++++++|.++|+.+++.+.. ++.+++++||++||
T Consensus 245 ---~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~ 321 (593)
T 4fo0_A 245 ---LSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCH 321 (593)
T ss_dssp ---CSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCB
T ss_pred ---CCceEEEEeCCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999876532 46789999999999
Q ss_pred cccCHHHHHHHHHhcCCCCcceeEEecCCCcccccccccCcchh-hhhcccCC---CCCCCCCccccccchhhHHHHhhh
Q 016004 220 VSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAA-QRYLSLSD---GSRSQPSETVKDMDRTEVMEEARD 295 (397)
Q Consensus 220 v~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~ 295 (397)
++.++..+ ......+.+|++.+......-..+.. ....-+.. ....+............+......
T Consensus 322 v~~d~~~~----------~~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (593)
T 4fo0_A 322 LDQDISGL----------QDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDE 391 (593)
T ss_dssp CCTTCCSC----------EEEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC------------
T ss_pred cccchHHh----------hhhhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhh
Confidence 99875432 12233455566553221110000000 00000000 000000000000000011111100
Q ss_pred h--------------------hcccCCccEEEecccccccccccccCCCC------------------------------
Q 016004 296 R--------------------KRADLAKNEFDLTNERFLVPEMIFQPADL------------------------------ 325 (397)
Q Consensus 296 ~--------------------~~~~~~~~~i~i~~er~~~~E~lF~p~~~------------------------------ 325 (397)
. .....++..+.++.+|+.+||.||+|...
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (593)
T 4fo0_A 392 HYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAIS 471 (593)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred hhhhhcccchhhhhhcccccccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccc
Confidence 0 00112467788899999999999998642
Q ss_pred --CCCCCChHHHHHHHHHhcC-hhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCc-----cEEEecCC---CCC
Q 016004 326 --GMNQAGLAECIVRAVNSCH-PYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDY-----QVKITTQE---EYS 394 (397)
Q Consensus 326 --~~~~~~l~~~I~~~i~~~~-~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~-----~~~v~~~~---~~~ 394 (397)
+.+..+|+++|.++|.+|| .|+|+.||+||+||||+|++|||.+||++||+.++|..+ +++|++++ ||.
T Consensus 472 ~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~ 551 (593)
T 4fo0_A 472 LFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPR 551 (593)
T ss_dssp HHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTT
T ss_pred cccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCc
Confidence 1234689999999999998 699999999999999999999999999999999999653 59999987 555
Q ss_pred C
Q 016004 395 H 395 (397)
Q Consensus 395 ~ 395 (397)
+
T Consensus 552 ~ 552 (593)
T 4fo0_A 552 L 552 (593)
T ss_dssp T
T ss_pred e
Confidence 4
No 6
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=1.2e-56 Score=448.72 Aligned_cols=334 Identities=25% Similarity=0.428 Sum_probs=288.1
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC----------------CcccCCcccccccccccccceeeCccc
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS----------------KKFIHPSPTAASATEDLTSAAVRRPID 65 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~----------------~~~~~G~~~~~~~~~~~~~~~~~~p~~ 65 (397)
.++||||+||.++|+||+|++.|++++||++++++.. +++++|+++. ... ...+++|++
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~--~~~---~~~~~~pi~ 79 (418)
T 1k8k_A 5 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAI--EKP---TYATKWPIR 79 (418)
T ss_dssp SCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGT--SCT---TSEEECCEE
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHH--hcC---CCEEecccc
Confidence 4789999999999999999999999999999987543 2377899988 442 488999999
Q ss_pred CCcccCHHHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhh-cc--ccC
Q 016004 66 RGYLINSDLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLY-EA--SRR 142 (397)
Q Consensus 66 ~g~i~~~d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~-~~--~~~ 142 (397)
+|.|.|||.++.+|+|+|.+.|+++++++++++++|++++...|+++.+++||.+++++++++++|++|+|. +. ...
T Consensus 80 ~G~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~ 159 (418)
T 1k8k_A 80 HGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVG 159 (418)
T ss_dssp TTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCC
T ss_pred CCEECCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccC
Confidence 999999999999999999888999999999999999999999999999999999999999999999999992 00 000
Q ss_pred CCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCC--ChHHHHHHHHHhcCcc
Q 016004 143 PYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVM--DETFIIDDVKEKLCFV 220 (397)
Q Consensus 143 a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~--~~~~~~~~iKe~~~~v 220 (397)
..| . +|+|||+|++.|+|+||++|+++.+++.++++||++++++|.++|..+++++. .+...++++|+++||+
T Consensus 160 ~~~----~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v 234 (418)
T 1k8k_A 160 ERT----L-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYV 234 (418)
T ss_dssp SCC----C-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCC
T ss_pred CCC----C-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchh
Confidence 034 5 89999999999999999999999999999999999999999999998877654 3457899999999999
Q ss_pred ccCHHHHHHHHHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhccc
Q 016004 221 SLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRAD 300 (397)
Q Consensus 221 ~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (397)
+.++.+++++.... .......|.+||+.+.
T Consensus 235 ~~~~~~e~~~~~~~--~~~~~~~~~lpd~~~~------------------------------------------------ 264 (418)
T 1k8k_A 235 CPDLVKEFNKYDTD--GSKWIKQYTGINAISK------------------------------------------------ 264 (418)
T ss_dssp CSCHHHHHHHHHHS--GGGTCEEEEEECTTTC------------------------------------------------
T ss_pred cccHHHHHHhhccc--ccccceeEECCCCCCC------------------------------------------------
Confidence 99988777654321 1122457888887621
Q ss_pred CCccEEEecccccccccccccCCCCCCCC-CChHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccC
Q 016004 301 LAKNEFDLTNERFLVPEMIFQPADLGMNQ-AGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLV 379 (397)
Q Consensus 301 ~~~~~i~i~~er~~~~E~lF~p~~~~~~~-~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~ 379 (397)
..+.+.++.|||.+||+||+|++++.+. .+|+++|.++|++||+|+|+.+++||+||||+|++|||.+||++||..++
T Consensus 265 -~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~ 343 (418)
T 1k8k_A 265 -KEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTV 343 (418)
T ss_dssp -CEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHH
T ss_pred -cccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhh
Confidence 1127899999999999999999887764 79999999999999999999999999999999999999999999998875
Q ss_pred ----------------CCCccEEEecCCCCCCC
Q 016004 380 ----------------PDDYQVKITTQEEYSHP 396 (397)
Q Consensus 380 ----------------p~~~~~~v~~~~~~~~~ 396 (397)
|..++++|+++++|.+.
T Consensus 344 ~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~ 376 (418)
T 1k8k_A 344 DARLKLSEELSGGRLKPKPIDVQVITHHMQRYA 376 (418)
T ss_dssp HHHHHHHHHHC----CCCCCCCCEECCTTCTTH
T ss_pred ccccccccccccccCCCCceeEEEeCCCccccc
Confidence 67788999999988763
No 7
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=9e-48 Score=390.60 Aligned_cols=304 Identities=21% Similarity=0.328 Sum_probs=250.2
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCC--------------------------------------------
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-------------------------------------------- 37 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~-------------------------------------------- 37 (397)
+.+|||..||.++|+|+|.|..| ..+|.+++++..
T Consensus 40 ~~~IVIHpGS~~lRIG~AsD~~P-~~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~rmr~~k~r 118 (655)
T 4am6_A 40 TATIVIHPGSNSIKIGFPKDDHP-VVVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYYKRK 118 (655)
T ss_dssp GGEEEEECCSSEEEEECTTSSSC-EEEESCEEEEGGGSCCSSSCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCeEEEcCCCcceeeeecCCCCC-cccceeEEeccccccCCCccccCccccchhhhHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 47899999999999999999999 478999885321
Q ss_pred -----------------------------------CCcccCCcccccccccccccceeeCcccCCccc----C-------
Q 016004 38 -----------------------------------SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLI----N------- 71 (397)
Q Consensus 38 -----------------------------------~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~----~------- 71 (397)
.+++++|+++. .+. .+.+.+++|+++|.|. |
T Consensus 119 ~~pn~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~~~d~~VGdEA~--~~~-r~~l~l~~PI~~GvI~~~s~Dy~s~q~~ 195 (655)
T 4am6_A 119 VPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDAL--RCV-DEKFVIRKPFRGGSFNVKSPYYKSLAEL 195 (655)
T ss_dssp CSTTCCSSTTCCEEEECSCCCCSSSSCCSCCCBCCTTSCEEHHHHH--TBC-TTTEEEECSEETTEECTTCSSCSSHHHH
T ss_pred CCCCCHHHHHHhcCCCCCeECCCCCCccccccccCCCCEEEehHHh--hCC-ccCeEEeccccCCEecccCCcccccccc
Confidence 01344566655 322 3568999999999998 8
Q ss_pred HHHHHHHHHHHhhc-ccCCCCC---CCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCC
Q 016004 72 SDLQRDIWAHLFSS-LLHISPS---ASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL 147 (397)
Q Consensus 72 ~d~~e~ll~~~~~~-~l~~~~~---~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~ 147 (397)
||.+|.+|+|+|.+ .|+++++ ++||||++|+++++..|+++++++||.|++|++|++.++++|+| ++|+
T Consensus 196 WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAly------asGl- 268 (655)
T 4am6_A 196 ISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCY------GAGI- 268 (655)
T ss_dssp HHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHH------HSCC-
T ss_pred HHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHH------hCCC-
Confidence 99999999999984 8999986 89999999999999999999999999999999999999999999 8881
Q ss_pred CCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCC-----CCC--ChHHHHHHHHHhcCcc
Q 016004 148 SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAI-----NVM--DETFIIDDVKEKLCFV 220 (397)
Q Consensus 148 ~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~-----~~~--~~~~~~~~iKe~~~~v 220 (397)
.+||+|||+|++.|+|+||++|+++.+++.++++||++++++|.++|..+++ ++. .+.+++++|||++|||
T Consensus 269 --~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~CyV 346 (655)
T 4am6_A 269 --STSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTF 346 (655)
T ss_dssp --SSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCC
T ss_pred --CCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheEEE
Confidence 3899999999999999999999999999999999999999999999999986 332 3568899999999999
Q ss_pred -ccCHHHHHHHHHhcCCCCcceeEEe--cCCCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhh
Q 016004 221 -SLDVARDLQIARKRGKDNLLRCTYV--LPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRK 297 (397)
Q Consensus 221 -~~d~~~~~~~~~~~~~~~~~~~~~~--l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 297 (397)
..|... ....+. .|+..+
T Consensus 347 s~~Di~~-------------q~~~f~~r~P~~~~---------------------------------------------- 367 (655)
T 4am6_A 347 QDADVAV-------------QLYNFMNRSPNQPT---------------------------------------------- 367 (655)
T ss_dssp CGGGCCS-------------EEEEEEECCSSSCE----------------------------------------------
T ss_pred cccchhh-------------hhhcceeccCCCCC----------------------------------------------
Confidence 444210 011121 232221
Q ss_pred cccCCccEEEecccccccccccccCCCCCC--------------------------------------------------
Q 016004 298 RADLAKNEFDLTNERFLVPEMIFQPADLGM-------------------------------------------------- 327 (397)
Q Consensus 298 ~~~~~~~~i~i~~er~~~~E~lF~p~~~~~-------------------------------------------------- 327 (397)
..+.+.++.|||+|||+||+|.+++.
T Consensus 368 ----~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~q~~~~~~~~~~~~~~~~ 443 (655)
T 4am6_A 368 ----EKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDL 443 (655)
T ss_dssp ----EEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHHHHHHHTTCCGGGCCSHH
T ss_pred ----cceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCCccchhHHhhhccccCCCCccHh
Confidence 13479999999999999999876320
Q ss_pred -----------------------------CCCChHHHHHHHHH-hc-ChhhHH--HhhccEEEecCccCCCChHHHHHhh
Q 016004 328 -----------------------------NQAGLAECIVRAVN-SC-HPYLHS--VLYESIILTGGSTLFPRFAERLERE 374 (397)
Q Consensus 328 -----------------------------~~~~l~~~I~~~i~-~~-~~d~r~--~l~~nIvltGG~s~i~G~~~RL~~e 374 (397)
...+|-++|.++|. .| ..|.++ ++|+||+++||+|+||||..-|...
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dr 523 (655)
T 4am6_A 444 KILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDR 523 (655)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHH
T ss_pred hhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHH
Confidence 01478899999998 34 236666 9999999999999999999999999
Q ss_pred ccccCCC
Q 016004 375 LRPLVPD 381 (397)
Q Consensus 375 L~~~~p~ 381 (397)
|....|.
T Consensus 524 i~i~rp~ 530 (655)
T 4am6_A 524 INIWRPS 530 (655)
T ss_dssp HHHHSCS
T ss_pred HHhhCcc
Confidence 9887764
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=100.00 E-value=5e-32 Score=263.53 Aligned_cols=292 Identities=15% Similarity=0.148 Sum_probs=224.8
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCCeeeeccceeeCC-CCcccCCcccccccccccccceeeCcccCCcccCHHHHHHHH
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-SKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIW 79 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~-~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll 79 (397)
|+.+|+||+||.++++|++++. |...+||+++.+.. ++.+++|+++......+..+..+.+|+++|.+.+|+..+.+|
T Consensus 2 ~~~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~ 80 (344)
T 1jce_A 2 LRKDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVML 80 (344)
T ss_dssp --CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHH
T ss_pred CCceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHHHHHHH
Confidence 5689999999999999999876 77889999998876 445678998873222223456678999999999999999999
Q ss_pred HHHhhcccCCC-CCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCC-CCCceEEEEe
Q 016004 80 AHLFSSLLHIS-PSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL-SETQCSLVVD 157 (397)
Q Consensus 80 ~~~~~~~l~~~-~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~-~~~~tglVVD 157 (397)
.+++.+..... +...+++++.|+..+...|+.+.+. +|.+|++.+.++.+|.+|++ ++|.. ....+.+|||
T Consensus 81 ~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a-~~~aG~~~~~li~ep~Aaa~------~~~~~~~~~~~~lVvD 153 (344)
T 1jce_A 81 RYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA-GLEAGASKVFLIEEPMAAAI------GSNLNVEEPSGNMVVD 153 (344)
T ss_dssp HHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCSEEEEEEHHHHHHH------HTTCCTTSSSCEEEEE
T ss_pred HHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEeccCCHHHHHH------hcCCCCCCCceEEEEE
Confidence 99997544323 4568999999999999999999885 69999999999999999999 55521 1236789999
Q ss_pred cCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcCCC
Q 016004 158 CGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKD 237 (397)
Q Consensus 158 iG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~ 237 (397)
+|++.|+++++..|.++.. ...++||.++|+.|.+.+.++ ++.......++++|+++|+...+...+
T Consensus 154 iGggttdvsv~~~~~~~~~--~~~~lGG~~id~~l~~~l~~~-~~~~~~~~~ae~~K~~l~~~~~~~~~~---------- 220 (344)
T 1jce_A 154 IGGGTTEVAVISLGSIVTW--ESIRIAGDEMDEAIVQYVRET-YRVAIGERTAERVKIEIGNVFPSKEND---------- 220 (344)
T ss_dssp ECSSCEEEEEEETTEEEEE--EEESCSHHHHHHHHHHHHHHH-HCEECCHHHHHHHHHHHCBCSCCHHHH----------
T ss_pred eCCCeEEEEEEEcCCEEee--CCCCccChhHHHHHHHHHHHH-hCcccCHHHHHHHHHHHhccCccccCC----------
Confidence 9999999999999987753 568999999999999988765 232334567999999999876543211
Q ss_pred CcceeEEecC-----CCcccccccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecccc
Q 016004 238 NLLRCTYVLP-----DGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNER 312 (397)
Q Consensus 238 ~~~~~~~~l~-----d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er 312 (397)
...+.++ ++. ...+.++.++
T Consensus 221 ---~~~~~~~~~~~~~g~----------------------------------------------------~~~~~i~~~~ 245 (344)
T 1jce_A 221 ---ELETTVSGIDLSTGL----------------------------------------------------PRKLTLKGGE 245 (344)
T ss_dssp ---HCEEEEEEEETTTTE----------------------------------------------------EEEEEEEHHH
T ss_pred ---cceEEEeccccCCCC----------------------------------------------------ceeEEEeHHH
Confidence 0011221 111 0145565554
Q ss_pred cccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhh-ccEEEecCccCCCChHHHHHhhcc
Q 016004 313 FLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLY-ESIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 313 ~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~-~nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
+. .+|+|.. ..+.+.|.++|++++.+.+++++ ++|+|+||+|++|||.++|++++.
T Consensus 246 ~~---~~~~~~~-----~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~ 302 (344)
T 1jce_A 246 VR---EALRSVV-----VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG 302 (344)
T ss_dssp HH---HHTHHHH-----HHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHS
T ss_pred HH---HHHHHHH-----HHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHC
Confidence 43 3455432 36889999999999999888888 799999999999999999999994
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.81 E-value=1e-19 Score=185.75 Aligned_cols=290 Identities=20% Similarity=0.218 Sum_probs=188.5
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCCee--------eeccceeeCCCCcccCCccccccccccc-ccceeeC----ccc--
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATEDL-TSAAVRR----PID-- 65 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~----p~~-- 65 (397)
|..+|.||+||.++++|++++..|..+ +||+++.. .++.++|+++......+. ....+++ |++
T Consensus 1 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~--~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg~p~~~~ 78 (509)
T 2v7y_A 1 MSKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFK--NGERLVGEVAKRQAITNPNTIISIKRHMGTDYKVE 78 (509)
T ss_dssp CCCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEES--SSSEEESHHHHTTTTTCSSEEECGGGTTTSCCCEE
T ss_pred CCCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEEC--CCcEEECHHHHHhHHhCCCcHHHHHHhcCCCcEEE
Confidence 788999999999999999988778776 89999873 345678888762111111 0111111 554
Q ss_pred -CCcccCHHHHHHHHHHHhhcccC-----CCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhcc
Q 016004 66 -RGYLINSDLQRDIWAHLFSSLLH-----ISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEA 139 (397)
Q Consensus 66 -~g~i~~~d~~e~ll~~~~~~~l~-----~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~ 139 (397)
+|. +|. .+.++.+++.+... +......++++.|.+.+...|+.+.+. ++..|++.+.++.+|.+|++
T Consensus 79 ~~g~--~~~-~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a-~~~AGl~~~~li~Ep~AAAl--- 151 (509)
T 2v7y_A 79 IEGK--QYT-PQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDA-GRIAGLEVERIINEPTAAAL--- 151 (509)
T ss_dssp ETTE--EEC-HHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHH---
T ss_pred ECCE--EEc-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecCHHHHHH---
Confidence 564 344 45555555532110 122346899999999999999988886 58999999999999999999
Q ss_pred ccCCCCCCC-CCceEEEEecCCCceEEEeee--Ccee-cccccEEeeccHHHHHHHHHHHHHhc-----CCCCCCh----
Q 016004 140 SRRPYGLLS-ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGKALTNYLKELVSYR-----AINVMDE---- 206 (397)
Q Consensus 140 ~~~a~g~~~-~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~gG~~l~~~l~~ll~~~-----~~~~~~~---- 206 (397)
++|+.. ...+.+|+|+|++.++++.+. +|.. +........+||.++|+.|.+.+..+ +.++..+
T Consensus 152 ---ay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~ 228 (509)
T 2v7y_A 152 ---AYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMAL 228 (509)
T ss_dssp ---HTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHH
T ss_pred ---HHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 555211 235789999999999999776 3543 22223446899999999999887654 3333221
Q ss_pred ---HHHHHHHHHhcCccccCHHHHHHHHHhcCCCCcceeEEecCCCcccccccccCcchhhhhcccCCCCCCCCCccccc
Q 016004 207 ---TFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDAAQRYLSLSDGSRSQPSETVKD 283 (397)
Q Consensus 207 ---~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 283 (397)
...++++|+.++... ...+.+|.......| .
T Consensus 229 ~~l~~~aE~~K~~ls~~~-------------------~~~i~l~~~~~~~~G-~-------------------------- 262 (509)
T 2v7y_A 229 QRLKDAAEKAKKELSGVT-------------------QTQISLPFISANENG-P-------------------------- 262 (509)
T ss_dssp HHHHHHHHHHHHHTTTCS-------------------EEEEEEEEEEEETTE-E--------------------------
T ss_pred HHHHHHHHHHHHhcCCCC-------------------cEEEEEeccccCCCC-C--------------------------
Confidence 234666777765432 111222210000000 0
Q ss_pred cchhhHHHHhhhhhcccCCccEEEecccccccccccccCCCCCCCCCChHHHHHHHHHhcChhhHHHhhccEEEecCccC
Q 016004 284 MDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTL 363 (397)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~ 363 (397)
....+.++.++| |.+|+|.+ ..+.+.|.++|..+.. ....+++|+|+||+|+
T Consensus 263 ------------------~~~~~~itr~~f---e~l~~~~~-----~~i~~~i~~~L~~a~~--~~~~i~~VvLvGG~s~ 314 (509)
T 2v7y_A 263 ------------------LHLEMTLTRAKF---EELSAHLV-----ERTMGPVRQALQDAGL--TPADIDKVILVGGSTR 314 (509)
T ss_dssp ------------------EEEEEEEEHHHH---HHHTHHHH-----HTTHHHHHHHHHHHTC--CGGGCSEEEEESGGGG
T ss_pred ------------------eeEEEEEEHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC--ChhHCcEEEEECCccc
Confidence 001345554443 23344422 2578889999988864 3445689999999999
Q ss_pred CCChHHHHHhhcc
Q 016004 364 FPRFAERLERELR 376 (397)
Q Consensus 364 i~G~~~RL~~eL~ 376 (397)
+|++.++|++++.
T Consensus 315 ~p~v~~~l~~~f~ 327 (509)
T 2v7y_A 315 IPAVQEAIKRELG 327 (509)
T ss_dssp CHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHhC
Confidence 9999999999984
No 10
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.79 E-value=2.1e-18 Score=161.63 Aligned_cols=168 Identities=14% Similarity=0.027 Sum_probs=126.3
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCCcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHL 82 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~~~ 82 (397)
-.++||+||.++|+....++. .. + + . ......|+++|.+.||+..+.+|.++
T Consensus 29 ~~~gIDiGS~s~k~vi~~~~~-~~-l----~-----------~-----------~~~~~~~l~~g~i~d~~~~~~~l~~~ 80 (272)
T 3h1q_A 29 YKVGVDLGTADIVLVVTDQEG-IP-V----A-----------G-----------ALKWASVVKDGLVVDYIGAIQIVREL 80 (272)
T ss_dssp CEEEEECCSSEEEEEEECTTC-CE-E----E-----------E-----------EEEECCCCBTTBCTTHHHHHHHHHHH
T ss_pred EEEEEEcccceEEEEEECCCC-cE-E----E-----------E-----------EeecccccCCCEEEcHHHHHHHHHHH
Confidence 368999999999998854322 11 1 1 0 01123578999999999999999999
Q ss_pred hhcccCCC-CCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCC
Q 016004 83 FSSLLHIS-PSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFS 161 (397)
Q Consensus 83 ~~~~l~~~-~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~ 161 (397)
+....... .....++++.|.......|+ .++.+++.++++...+..++.++++ ++| ..+++|||+|++
T Consensus 81 ~~~~~~~~~~~~~~~v~tvp~~~~~~~~~-~~~~~~~~~g~~~~~i~~e~~A~a~------~~~----~~~~~viDiGgg 149 (272)
T 3h1q_A 81 KAKVERLLGSELFQAATAIPPGTVGRNAE-ACGHVVAGAGLELVTLVDEPVAAAR------ALG----INDGIVVDIGGG 149 (272)
T ss_dssp HHHHHHHSSSCCCEEEEECCSCC---CTT-HHHHHHHHTTCEEEEEECHHHHHHH------HHT----CSSEEEEEECSS
T ss_pred HHHHHHhcCCccCeEEEEcCCCCCHHHHH-HHHHHHHHcCCeeeecccHHHHHHH------HHc----CCCEEEEEECCC
Confidence 87544332 23356677777666555544 5666889999999999999999999 777 677999999999
Q ss_pred ceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcC
Q 016004 162 FTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLC 218 (397)
Q Consensus 162 ~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~ 218 (397)
.|.++++.+|.++.. ...++||.++++.+.+.+. .+...++++|++++
T Consensus 150 st~~~~~~~g~~~~~--~~~~~Gg~~~~~~l~~~l~-------~~~~~ae~~k~~~~ 197 (272)
T 3h1q_A 150 TTGIAVIEKGKITAT--FDEPTGGTHLSLVLAGSYK-------IPFEEAETIKKDFS 197 (272)
T ss_dssp CEEEEEEETTEEEEE--CCBSCCHHHHHHHHHHHHT-------CCHHHHHHHHHSST
T ss_pred cEEEEEEECCEEEEE--ecCCCcHHHHHHHHHHHhC-------CCHHHHHHHHHhcC
Confidence 999999999998854 5689999999999998875 23356788888765
No 11
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.78 E-value=6.8e-19 Score=173.18 Aligned_cols=292 Identities=15% Similarity=0.168 Sum_probs=179.1
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCCee--------eeccceeeCCCCcccCCcccccccccccccc----------e---
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATEDLTSA----------A--- 59 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~----------~--- 59 (397)
|+..|-||+||.++.+++..+..|..+ +||+++...+ .+.++|.++......+.... .
T Consensus 1 m~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 79 (383)
T 1dkg_D 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD-GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79 (383)
T ss_dssp --CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTT-SCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCS
T ss_pred CCcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECC-CCEEECHHHHHhhhhCccceeehhHHhhCCCCCc
Confidence 778899999999999999865545443 7898876543 33446665431100000000 0
Q ss_pred --e-----eCccc-------------CCc-ccCHHHHHHHHHHHhhc---ccCCCCCCCeEEEEccCCCCHHHHHHHHHH
Q 016004 60 --V-----RRPID-------------RGY-LINSDLQRDIWAHLFSS---LLHISPSASSLLLTEPLFALPSIQRATDEL 115 (397)
Q Consensus 60 --~-----~~p~~-------------~g~-i~~~d~~e~ll~~~~~~---~l~~~~~~~pvll~e~~~~~~~~r~~l~e~ 115 (397)
+ .+|+. .|. +.-.+....+|.++... .++ .....++++.|...+...|+.+.+.
T Consensus 80 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r~~~~~a 157 (383)
T 1dkg_D 80 EEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQRQATKDA 157 (383)
T ss_dssp HHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEECBCTTCCHHHHHHHHHH
T ss_pred HHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHH
Confidence 0 01221 232 22233444455555431 222 2345789999999999999988886
Q ss_pred hhhhcCCceeeeecccccchhhccccCCCCCCC--CCceEEEEecCCCceEEEeeeCc------eecc-cccEEeeccHH
Q 016004 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVFQN------FTVN-YAVKRIDLGGK 186 (397)
Q Consensus 116 lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~--~~~tglVVDiG~~~t~v~pV~dG------~~~~-~~~~~~~~gG~ 186 (397)
++..|++.+.++.+|.++++ ++++.. ...+.+|||+|++.|+++.+..+ .... ......++||.
T Consensus 158 -~~~aGl~~~~li~Ep~Aaa~------~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~ 230 (383)
T 1dkg_D 158 -GRIAGLEVKRIINEPTAAAL------AYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (383)
T ss_dssp -HHHTTCEESCCCBHHHHHHH------HHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHH
T ss_pred -HHHcCCceEEEeccHHHHHH------HHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHH
Confidence 58999999999999999999 444221 23578999999999999977654 2211 12234689999
Q ss_pred HHHHHHHHHHHhc-----CCCCCCh-------HHHHHHHHHhcCccccCHHHHHHHHHhcCCCCcceeEEecCCCccccc
Q 016004 187 ALTNYLKELVSYR-----AINVMDE-------TFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTK 254 (397)
Q Consensus 187 ~l~~~l~~ll~~~-----~~~~~~~-------~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 254 (397)
++|+.|.+++..+ +.++..+ ...++++|+.+|..... .-.....+..++|.
T Consensus 231 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~-------------~i~i~~~~~~~~G~---- 293 (383)
T 1dkg_D 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT-------------DVNLPYITADATGP---- 293 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE-------------EEEEEEEEEETTEE----
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce-------------EEEEecccccCCCC----
Confidence 9999999888654 4443322 24567777777654210 00000001111110
Q ss_pred ccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecccccccccccccCCCCCCCCCChHH
Q 016004 255 GFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAE 334 (397)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~ 334 (397)
....+.++.+++. .+|+|.+ ..+.+
T Consensus 294 -----------------------------------------------~~~~~~it~~~~~---~~~~~~~-----~~i~~ 318 (383)
T 1dkg_D 294 -----------------------------------------------KHMNIKVTRAKLE---SLVEDLV-----NRSIE 318 (383)
T ss_dssp -----------------------------------------------EEEEEEEEHHHHH---HHSHHHH-----HHHHH
T ss_pred -----------------------------------------------eeEEEEEeHHHHH---HHHHHHH-----HHHHH
Confidence 0013455544432 3344422 25788
Q ss_pred HHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhcc
Q 016004 335 CIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 335 ~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
.|.++|.++.. ++..+++|+|+||+|++||+.++|++++.
T Consensus 319 ~i~~~l~~~~~--~~~~i~~IvL~GG~s~~p~l~~~l~~~~~ 358 (383)
T 1dkg_D 319 LLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFG 358 (383)
T ss_dssp HHHHHHHTTTC--CTTTCCEEEEESGGGGSHHHHHHHHHHHS
T ss_pred HHHHHHHHcCC--CHhhCCEEEEecCccccHHHHHHHHHHhC
Confidence 88999988864 33456899999999999999999999984
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.74 E-value=6.4e-17 Score=159.41 Aligned_cols=184 Identities=13% Similarity=0.119 Sum_probs=118.3
Q ss_pred CCeEEEECCCccEEEEEeCCCCCCee--------eeccceeeCCCCcccCCcccccccccccccceeeCcccCCc-----
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGY----- 68 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~----- 68 (397)
+.+|.||+||.++++++..+..|..+ +||+++...+ +.++|+++......+ .......+++..
T Consensus 18 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~--~~~vG~~A~~~~~~~--~~~~~~~~k~~lg~~~~ 93 (394)
T 3qfu_A 18 GTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDD--ERLIGDAAKNQVAAN--PQNTIFDIKRLIGLKYN 93 (394)
T ss_dssp CSCEEEEECSSEEEEEEECSSCEEECCCTTSCSSEECCEEECSS--CEEESHHHHHTGGGC--GGGEECCGGGTTTCCTT
T ss_pred CCEEEEEeCcCcEEEEEEECCeeEEEECCCCCEeeceEEEEeCC--cEEecHHHHHhhHhC--cccCHHHHHHHhCCCCC
Confidence 45799999999999999987766543 3888876543 455676654110000 001111111111
Q ss_pred ----------------------------------ccCHHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHH
Q 016004 69 ----------------------------------LINSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRA 111 (397)
Q Consensus 69 ----------------------------------i~~~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~ 111 (397)
+.-.+....+|.++.. ..++ ..-..++++.|...+...|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~a~~l~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r~~ 171 (394)
T 3qfu_A 94 DRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYLG--TKVTHAVVTVPAYFNDAQRQA 171 (394)
T ss_dssp CHHHHHHHTTCSSEEEEETTEEEEEEESSSSEEEECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHH
T ss_pred cHHHHHHhhcCCeEEEcCCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHhcC--CCcceEEEEECCCCCHHHHHH
Confidence 1111233334444332 2222 234689999999999999998
Q ss_pred HHHHhhhhcCCceeeeecccccchhhccccCCCCCCC--CCceEEEEecCCCceEEEeee--Cceecccc-cEEeeccHH
Q 016004 112 TDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVF--QNFTVNYA-VKRIDLGGK 186 (397)
Q Consensus 112 l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~--~~~tglVVDiG~~~t~v~pV~--dG~~~~~~-~~~~~~gG~ 186 (397)
+.+.+ +..|++.+.++.+|.++++ ++|+.. ...+-+|+|+|.+.|+++.+- ++...... .....+||.
T Consensus 172 ~~~a~-~~aGl~~~~li~Ep~Aaa~------~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~ 244 (394)
T 3qfu_A 172 TKDAG-TIAGLNVLRIVNEPTAAAI------AYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGE 244 (394)
T ss_dssp HHHHH-HHTTCEEEEEEEHHHHHHH------HTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHH
T ss_pred HHHHH-HHcCCceEEEecCHHHHHH------HHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChH
Confidence 87776 8999999999999999999 444211 234569999999999877664 44332222 233689999
Q ss_pred HHHHHHHHHHHh
Q 016004 187 ALTNYLKELVSY 198 (397)
Q Consensus 187 ~l~~~l~~ll~~ 198 (397)
++++.|.+.+..
T Consensus 245 ~~d~~l~~~l~~ 256 (394)
T 3qfu_A 245 DFDYKIVRQLIK 256 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988743
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.64 E-value=2.3e-15 Score=148.91 Aligned_cols=183 Identities=14% Similarity=0.126 Sum_probs=117.5
Q ss_pred CCeEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCcccccccccccccceeeCcccCCcc----
Q 016004 2 SNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYL---- 69 (397)
Q Consensus 2 ~~~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i---- 69 (397)
..+|.||+||.++++++..+..|. ..+||+++...+ +.++|+++......+ ...+.+.+++..-
T Consensus 23 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~--~~~vG~~A~~~~~~~--~~~~~~~~Kr~lg~~~~ 98 (404)
T 3i33_A 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT--ERLIGDAAKNQVAMN--PTNTIFDAKRLIGRKFE 98 (404)
T ss_dssp CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS--CEEETHHHHHTTTTC--STTEECCGGGTTTCCTT
T ss_pred CCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC--CEEecHHHHHhhHhC--hhhhHHHHHHHhCCCCC
Confidence 368999999999999999765543 245888776543 455676654110000 0111112221111
Q ss_pred -----------------------------------cCHHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHH
Q 016004 70 -----------------------------------INSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRA 111 (397)
Q Consensus 70 -----------------------------------~~~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~ 111 (397)
.-.+....+|.++.. ..++ ..-..++++.|...+...|+.
T Consensus 99 ~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~--~~~~~~vitvPa~~~~~~r~~ 176 (404)
T 3i33_A 99 DATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLG--GKVHSAVITVPAYFNDSQRQA 176 (404)
T ss_dssp SHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEEEECTTCCHHHHHH
T ss_pred cHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhc--cCCCcEEEEECCCCCHHHHHH
Confidence 111233334444432 2222 234579999999999999998
Q ss_pred HHHHhhhhcCCceeeeecccccchhhccccCCCCCCC-----CCceEEEEecCCCceEEEeee--Ccee-cccccEEeec
Q 016004 112 TDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS-----ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDL 183 (397)
Q Consensus 112 l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~-----~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~ 183 (397)
+.+. ++..|++.+.++.+|.+|++ +++... ...+-+|+|+|.+.++++.+- +|.. +........+
T Consensus 177 ~~~a-~~~AGl~~~~li~Ep~AAa~------~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~l 249 (404)
T 3i33_A 177 TKDA-GTITGLNVLRIINEPTAAAI------AYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 249 (404)
T ss_dssp HHHH-HHHHTCEEEEEEEHHHHHHH------HTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTC
T ss_pred HHHH-HHHcCCCeEEEeccHHHHHH------HHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCC
Confidence 8776 68999999999999999999 443211 235569999999999998774 4432 2222334689
Q ss_pred cHHHHHHHHHHHHH
Q 016004 184 GGKALTNYLKELVS 197 (397)
Q Consensus 184 gG~~l~~~l~~ll~ 197 (397)
||.++++.|.+.+.
T Consensus 250 GG~~~d~~l~~~l~ 263 (404)
T 3i33_A 250 GGEDFDNRMVSHLA 263 (404)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998874
No 14
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.54 E-value=1.3e-13 Score=141.95 Aligned_cols=187 Identities=15% Similarity=0.142 Sum_probs=120.1
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCccccccccccccc--cee----------
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAASATEDLTS--AAV---------- 60 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~--~~~---------- 60 (397)
|..+|-||+|+.++.+++..+..|. ..+||+++...+ +.++|..+......+..+ ..+
T Consensus 3 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~--~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d 80 (554)
T 1yuw_A 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT--ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDD 80 (554)
T ss_dssp SCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS--CEEETHHHHTTTTTCGGGEECCGGGTTTCCSSC
T ss_pred CCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC--cEEEcHHHHHhhhhChhhehHhhHHhcCCCCCc
Confidence 5678999999999999998654332 345888887543 455676654110000000 000
Q ss_pred --------eCccc----CCc------------ccC-HHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHH
Q 016004 61 --------RRPID----RGY------------LIN-SDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRAT 112 (397)
Q Consensus 61 --------~~p~~----~g~------------i~~-~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l 112 (397)
.+|++ .|. ... .+....+|.++.. ..++. .-..++++.|...+...|+.+
T Consensus 81 ~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~--~v~~~VitVPa~f~~~qr~a~ 158 (554)
T 1yuw_A 81 AVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGK--TVTNAVVTVPAYFNDSQRQAT 158 (554)
T ss_dssp SHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSS--CCCEEEEEECTTCCHHHHHHH
T ss_pred HHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHH
Confidence 01110 111 001 2333344444432 23332 235789999999999999988
Q ss_pred HHHhhhhcCCceeeeecccccchhhccccCCCCCCC---CCceEEEEecCCCceEEEeee--Ccee-cccccEEeeccHH
Q 016004 113 DELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS---ETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLGGK 186 (397)
Q Consensus 113 ~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~---~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~gG~ 186 (397)
.+ .++..|+..+.++..|.+|++ ++|+.. ...+.+|+|+|++.++++.+. +|.. +........+||.
T Consensus 159 ~~-A~~~AGl~~~~li~EP~AAAl------ay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~ 231 (554)
T 1yuw_A 159 KD-AGTIAGLNVLRIINEPTAAAI------AYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGE 231 (554)
T ss_dssp HH-HHHTTTCEEEEEEEHHHHHHH------HTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHH
T ss_pred HH-HHHHcCCCeEEEeCcHHHHHH------HHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHH
Confidence 77 558899999999999999999 555322 135789999999999999876 6754 2223344689999
Q ss_pred HHHHHHHHHHHh
Q 016004 187 ALTNYLKELVSY 198 (397)
Q Consensus 187 ~l~~~l~~ll~~ 198 (397)
++|+.|.+.+..
T Consensus 232 d~d~~l~~~l~~ 243 (554)
T 1yuw_A 232 DFDNRMVNHFIA 243 (554)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887753
No 15
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.51 E-value=7.3e-14 Score=145.13 Aligned_cols=292 Identities=15% Similarity=0.180 Sum_probs=171.2
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCCee--------eeccceeeCCCCcccCCccccccccccccc----------cee--
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPAVT--------IPNCMYRPLSSKKFIHPSPTAASATEDLTS----------AAV-- 60 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~~~--------~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~----------~~~-- 60 (397)
|..+|-||+||.++.+++..+..|.++ +||+++...+ .+.++|..+......+..+ ..+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d 79 (605)
T 2kho_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD-GETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79 (605)
T ss_dssp ---CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTT-SCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSS
T ss_pred CCCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECC-CcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCc
Confidence 778999999999999999865555444 7888876443 3345666543110000000 000
Q ss_pred --------eCccc-------------CCcccC-HHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHH
Q 016004 61 --------RRPID-------------RGYLIN-SDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (397)
Q Consensus 61 --------~~p~~-------------~g~i~~-~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~ 115 (397)
.+|++ .|.... .+....+|.++.. ..++ ..-..++++.|.+.....|+.+.+.
T Consensus 80 ~~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~--~~v~~~VitVPa~f~d~qr~a~~~A 157 (605)
T 2kho_A 80 EEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQRQATKDA 157 (605)
T ss_dssp TTHHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHC--SCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCcEEEEEECCCCCHHHHHHHHHH
Confidence 01221 232212 2233334444432 2233 2235789999999999999888776
Q ss_pred hhhhcCCceeeeecccccchhhccccCCCCCCC--CCceEEEEecCCCceEEEeeeC------cee-cccccEEeeccHH
Q 016004 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVFQ------NFT-VNYAVKRIDLGGK 186 (397)
Q Consensus 116 lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~--~~~tglVVDiG~~~t~v~pV~d------G~~-~~~~~~~~~~gG~ 186 (397)
+ +..|+..+.++..|.+|++ ++|+.. ...+.+|+|+|++.++|+.+.- |.. +........+||.
T Consensus 158 ~-~~AGl~v~~li~EP~AAAl------ay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~ 230 (605)
T 2kho_A 158 G-RIAGLEVKRIINEPTAAAL------AYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (605)
T ss_dssp H-HTTTCEEEEEEEHHHHHHH------HTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGG
T ss_pred H-HHcCCceEEEecCHHHHHH------HhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHH
Confidence 4 7889999999999999999 665432 2345799999999999988763 432 1122234589999
Q ss_pred HHHHHHHHHHHhc-----CCCCCChH-------HHHHHHHHhcCccccCHHHHHHHHHhcCCCCcceeEEecCCCccccc
Q 016004 187 ALTNYLKELVSYR-----AINVMDET-------FIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTK 254 (397)
Q Consensus 187 ~l~~~l~~ll~~~-----~~~~~~~~-------~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 254 (397)
++|+.|.+.+..+ +.++..+. ..++++|+.++... ...+.++.......
T Consensus 231 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~-------------------~~~i~l~~~~~~~~ 291 (605)
T 2kho_A 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ-------------------QTDVNLPYITADAT 291 (605)
T ss_dssp GTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSS-------------------EEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-------------------ceEEEecccccCCC
Confidence 9999999877653 34433221 33555566554321 11111110000000
Q ss_pred ccccCcchhhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecccccccccccccCCCCCCCCCChHH
Q 016004 255 GFVKDPDAAQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAE 334 (397)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~ 334 (397)
| . ....+.++.+.| |-++.|.+ ..+.+
T Consensus 292 G-~--------------------------------------------~~~~~~itr~~f---e~l~~~~~-----~~i~~ 318 (605)
T 2kho_A 292 G-P--------------------------------------------KHMNIKVTRAKL---ESLVEDLV-----NRSIE 318 (605)
T ss_dssp E-E--------------------------------------------EEEEEEEEHHHH---HTTCCSTT-----GGGTS
T ss_pred C-c--------------------------------------------eEEEEEEeHHHH---HHHHHHHH-----HHHHH
Confidence 0 0 001234444333 23444432 25677
Q ss_pred HHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhcc
Q 016004 335 CIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 335 ~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
.|.++|..+... ..-.+.|+|+||+|++|++.++|++.+.
T Consensus 319 ~i~~~L~~a~~~--~~~i~~VvLvGG~srip~v~~~l~~~fg 358 (605)
T 2kho_A 319 PLKVALQDAGLS--VSDIDDVILVGGQTRMPMVQKKVAEFFG 358 (605)
T ss_dssp HHHHHHHTTTCC--TTTCSEEEEESGGGGSHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC--hhhCceEEEECCcccChHHHHHHHHhcC
Confidence 888888877532 2335799999999999999999998884
No 16
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=99.45 E-value=2.1e-13 Score=132.31 Aligned_cols=176 Identities=18% Similarity=0.119 Sum_probs=123.6
Q ss_pred eEEEECCCccEEEEEeCCCCCCeeeeccceeeCCC----------------------CcccCCcccccccccccccceee
Q 016004 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSS----------------------KKFIHPSPTAASATEDLTSAAVR 61 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~----------------------~~~~~G~~~~~~~~~~~~~~~~~ 61 (397)
.+-||+|+.++|+-. ++.. .+.+||.++..... +.|.+|+++.
T Consensus 23 ~igiDlG~~~tkv~~-~~g~-~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG~~A~------------- 87 (346)
T 2fsj_A 23 VVGLDVGYGDTKVIG-VDGK-RIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIR------------- 87 (346)
T ss_dssp EEEEEECSSEEEEEC-GGGC-EEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSCCB-------------
T ss_pred EEEEecCCcceeEEe-cCCC-EEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEcccee-------------
Confidence 478999999999964 4432 57899999875432 2333454433
Q ss_pred CcccCCcccCHHHHHHHHHHHhhccc-CCCCCCCeEE--EEccCCCCHHHHHHHHHHhhhh-------------cCCcee
Q 016004 62 RPIDRGYLINSDLQRDIWAHLFSSLL-HISPSASSLL--LTEPLFALPSIQRATDELVFED-------------FNFKSL 125 (397)
Q Consensus 62 ~p~~~g~i~~~d~~e~ll~~~~~~~l-~~~~~~~pvl--l~e~~~~~~~~r~~l~e~lFE~-------------~~vp~v 125 (397)
.|++.|.+.+ +..+.++.+.+.+.. ........++ ++.|.......|+.+.+.+... +++..+
T Consensus 88 ~~l~~~~~~~-~~~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v 166 (346)
T 2fsj_A 88 VPQGDGRLAS-KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRL 166 (346)
T ss_dssp CCSSTTCTTS-TTTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEE
T ss_pred cccCCCcccC-hhHHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEE
Confidence 6888899888 788888888887543 1112334688 8888877777788887775442 235678
Q ss_pred eeecccccchhhccccCCCCCCC--CCceEEEEecCCCceEEEeee--CceecccccEEeeccHHHHHHHHHHHHHhc
Q 016004 126 FVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVF--QNFTVNYAVKRIDLGGKALTNYLKELVSYR 199 (397)
Q Consensus 126 ~~~~~~~la~~~~~~~~a~g~~~--~~~tglVVDiG~~~t~v~pV~--dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~ 199 (397)
.++++|.+|++.+.. +... ...+-+|||+|.+.|.++-+. +|.++......+++||.++++.+.+.++++
T Consensus 167 ~li~Ep~AAa~~~l~----~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 167 IMRPQGVGAALYLLN----QGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp EEEETTHHHHHHHHH----HTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEccHHHHHHHhhc----cccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHHHHHH
Confidence 999999999983210 1000 124459999999999999998 787666556778999999999988776643
No 17
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.44 E-value=3.1e-12 Score=125.25 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCC---CCCceEEEEecCCCceEEEeeeCceecccccEEee
Q 016004 106 PSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL---SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRID 182 (397)
Q Consensus 106 ~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~---~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~ 182 (397)
++..+.+.++ ++..|+.-..+..+|++++. ++|+. ....+.+|||+|++.|+++.+.+|.+... ...+
T Consensus 150 ~~~v~~~~~~-~~~aGl~~~~i~~ep~Aaa~------~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~~--~~~~ 220 (377)
T 2ych_A 150 QEAVAGVLEA-LRGAGLVPVVLDVKPFAGLY------PLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAV--RVLT 220 (377)
T ss_dssp HHHHHHHHHH-HHHTTCEEEEEEEHHHHTTG------GGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEEE--EEES
T ss_pred HHHHHHHHHH-HHHCCCceEEEecchHHHHH------HHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEEE--Eeee
Confidence 3334444443 48889999999999999888 43210 01234599999999999999999988764 5689
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccccCHHHHHHHHHhcCCCCcceeEEecCCCcccccccccCcch
Q 016004 183 LGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVSLDVARDLQIARKRGKDNLLRCTYVLPDGVTHTKGFVKDPDA 262 (397)
Q Consensus 183 ~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~ 262 (397)
+||.++++.+.+.+ + .+...++++|++++++..+...+.. .+.+++.
T Consensus 221 ~GG~~i~~~i~~~~-----~--~~~~~aE~~K~~~~~~~~~~~~~~~-------------~i~~~~~------------- 267 (377)
T 2ych_A 221 LSGKDFTEAIARSF-----N--LDLLAAEEVKRTYGMATLPTEDEEL-------------LLDFDAE------------- 267 (377)
T ss_dssp CSHHHHHHHHHHHT-----T--CCHHHHHHHHHHTC--------------------------------------------
T ss_pred chHHHHHHHHHHHh-----C--CCHHHHHHHHhhccccccccccccc-------------ccccccc-------------
Confidence 99999999988743 2 2245689999998876432111100 0011100
Q ss_pred hhhhcccCCCCCCCCCccccccchhhHHHHhhhhhcccCCccEEEecccccccccccccCCCCCCCCCChHHHHHHHHHh
Q 016004 263 AQRYLSLSDGSRSQPSETVKDMDRTEVMEEARDRKRADLAKNEFDLTNERFLVPEMIFQPADLGMNQAGLAECIVRAVNS 342 (397)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~ 342 (397)
.+.++.+. ..|++ .|. ...|.+.|.++|+.
T Consensus 268 ------------------------------------------~~~i~~~~--~~~~i-~~~-----~~~i~~~i~~~l~~ 297 (377)
T 2ych_A 268 ------------------------------------------RERYSPGR--IYDAI-RPV-----LVELTQELRRSLEF 297 (377)
T ss_dssp -------------------------------------------------C--HHHHH-HHH-----HHHHHHHHHHHHHH
T ss_pred ------------------------------------------cccCCHHH--HHHHH-HHH-----HHHHHHHHHHHHHH
Confidence 11111111 11111 111 01467778888887
Q ss_pred cChhhHHHhhccEEEecCccCCCChHHHHHhhcc
Q 016004 343 CHPYLHSVLYESIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 343 ~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
++...+....++|+||||+|++||+.++|++++.
T Consensus 298 ~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~ 331 (377)
T 2ych_A 298 FRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG 331 (377)
T ss_dssp HHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred HHhccCCCCcCEEEEECccccchhHHHHHHHHhC
Confidence 7666667778999999999999999999999984
No 18
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.40 E-value=1.7e-12 Score=128.57 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhc---ccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCC
Q 016004 73 DLQRDIWAHLFSS---LLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSE 149 (397)
Q Consensus 73 d~~e~ll~~~~~~---~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~ 149 (397)
+....+|.++... .++ .....++++.|.......|+.+.+.+ +..|+..+.++.+|.++++++..... ....
T Consensus 129 ev~~~~L~~l~~~a~~~~~--~~~~~~vitvPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~--~~~~ 203 (409)
T 4gni_A 129 EIATRYLRRLVGAASEYLG--KKVTSAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDARPE--ATIS 203 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTC--------C
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHHhcccc--cCCC
Confidence 3445556555432 222 33467999999999998888776664 78899999999999999994421100 0012
Q ss_pred CceEEEEecCCCceEEEee--eCceec-ccccEEeeccHHHHHHHHHHHHHh
Q 016004 150 TQCSLVVDCGFSFTHAAPV--FQNFTV-NYAVKRIDLGGKALTNYLKELVSY 198 (397)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV--~dG~~~-~~~~~~~~~gG~~l~~~l~~ll~~ 198 (397)
..+.+|+|+|.+.++++-+ -+|..- ........+||.++|+.|.+.+..
T Consensus 204 ~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~ 255 (409)
T 4gni_A 204 DKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSK 255 (409)
T ss_dssp CEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence 4467999999999998775 333221 111224689999999999988764
No 19
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.40 E-value=1.4e-12 Score=136.77 Aligned_cols=191 Identities=10% Similarity=0.025 Sum_probs=117.5
Q ss_pred CCCeEEEECCCccEEEEEeCCCCCC--------eeeeccceeeCCCCcccCCcccccc-------------ccccc--cc
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDPA--------VTIPNCMYRPLSSKKFIHPSPTAAS-------------ATEDL--TS 57 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P~--------~~~ps~~~~~~~~~~~~~G~~~~~~-------------~~~~~--~~ 57 (397)
|-.+|-||+||.++.+++.....|. ..+||+++...+ +.++|+.+... ..... ..
T Consensus 1 Mm~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~--~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d 78 (675)
T 3d2f_A 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK--NRYLGETGKNKQTSNIKNTVANLKRIIGLDYHH 78 (675)
T ss_dssp -CCCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS--SEEETHHHHHHHTTCGGGEECCHHHHTTCBTTC
T ss_pred CCcEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC--cEEecHHHHHhhhhChHhHHHHHHHHhCCCCCc
Confidence 5568999999999999997544333 235888876543 34567665310 00000 00
Q ss_pred -----------ceeeCcccCCcc-------------cCHHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHH
Q 016004 58 -----------AAVRRPIDRGYL-------------INSDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQR 110 (397)
Q Consensus 58 -----------~~~~~p~~~g~i-------------~~~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~ 110 (397)
..+ .+..+|.+ .-.+....+|.++.. ..++. .-..++++.|.+.+...|+
T Consensus 79 ~~v~~~~~~~p~~v-~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~ 155 (675)
T 3d2f_A 79 PDFEQESKHFTSKL-VELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKA--NITDVCIAVPPWYTEEQRY 155 (675)
T ss_dssp TTHHHHHTTCCSEE-EECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCS--CCCEEEEEECTTCCHHHHH
T ss_pred HHHHHHHhhCCeeE-EEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHH
Confidence 001 01122321 112233334444432 22332 2257899999999999999
Q ss_pred HHHHHhhhhcCCceeeeecccccchhhccccCCCCCC---CCCceEEEEecCCCceEEEeee--Ccee-cccccEEeecc
Q 016004 111 ATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL---SETQCSLVVDCGFSFTHAAPVF--QNFT-VNYAVKRIDLG 184 (397)
Q Consensus 111 ~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~---~~~~tglVVDiG~~~t~v~pV~--dG~~-~~~~~~~~~~g 184 (397)
.+.+.+ +..|+..+.+++.|.+|++.+..... ++. ....+.+|+|+|++.++|+-+- +|.. +........+|
T Consensus 156 a~~~Aa-~~AGl~~~~li~EP~AAAlaygl~~~-~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lG 233 (675)
T 3d2f_A 156 NIADAA-RIAGLNPVRIVNDVTAAGVSYGIFKT-DLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFG 233 (675)
T ss_dssp HHHHHH-HHTTCEEEEEEEHHHHHHHHHHHHCS-CCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCS
T ss_pred HHHHHH-HHcCCceEEEEcchHHHHHHHhhhcc-ccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCcc
Confidence 887754 78899999999999999983311000 000 1245679999999999998875 6654 23233346899
Q ss_pred HHHHHHHHHHHHHh
Q 016004 185 GKALTNYLKELVSY 198 (397)
Q Consensus 185 G~~l~~~l~~ll~~ 198 (397)
|.++|+.|.+.+..
T Consensus 234 G~d~D~~l~~~l~~ 247 (675)
T 3d2f_A 234 GRDFDLAITEHFAD 247 (675)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 20
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.29 E-value=3.3e-11 Score=125.18 Aligned_cols=188 Identities=16% Similarity=0.176 Sum_probs=116.1
Q ss_pred CCCeEEEECCCccEEEEEeCCCCC--------CeeeeccceeeCCCCcccCCccccccccccccc--ceee---------
Q 016004 1 MSNIVVLDNGGGLIKAGHGGERDP--------AVTIPNCMYRPLSSKKFIHPSPTAASATEDLTS--AAVR--------- 61 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~~P--------~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~--~~~~--------- 61 (397)
|+.+|-||+||-++.+++.....| ...+||+++...+ .+.++|..+......+..+ ..++
T Consensus 1 M~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d 79 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD-GCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQD 79 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTT-SCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTS
T ss_pred CCcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCC-CcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCC
Confidence 788999999999999999754333 2346888887543 2344565543110000000 0000
Q ss_pred ---------Ccc-----c--------CCcccC-HHHHHHHHHHHhh---cccCCCCCCCeEEEEccCCCCHHHHHHHHHH
Q 016004 62 ---------RPI-----D--------RGYLIN-SDLQRDIWAHLFS---SLLHISPSASSLLLTEPLFALPSIQRATDEL 115 (397)
Q Consensus 62 ---------~p~-----~--------~g~i~~-~d~~e~ll~~~~~---~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~ 115 (397)
+|+ . .|.... .+....+|.++.. ..++. .-..++++.|...+...|+.+.+.
T Consensus 80 ~~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qr~a~~~A 157 (605)
T 4b9q_A 80 EEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQRQATKDA 157 (605)
T ss_dssp HHHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTS--CCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH
Confidence 010 0 122112 2334445555443 23332 335789999999999998876655
Q ss_pred hhhhcCCceeeeecccccchhhccccCCCCCCC--CCceEEEEecCCCceEEEeeeCce----ec---ccccEEeeccHH
Q 016004 116 VFEDFNFKSLFVADPPSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVFQNF----TV---NYAVKRIDLGGK 186 (397)
Q Consensus 116 lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~--~~~tglVVDiG~~~t~v~pV~dG~----~~---~~~~~~~~~gG~ 186 (397)
.+..|+..+.++..|.+|++ ++|+.. ...+-+|+|+|.+.++++-+--+. .. ........+||.
T Consensus 158 -a~~AGl~v~~li~EP~AAAl------aygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~ 230 (605)
T 4b9q_A 158 -GRIAGLEVKRIINEPTAAAL------AYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (605)
T ss_dssp -HHHTTCEEEEEEEHHHHHHH------HHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHH
T ss_pred -HHHcCCceEEEeCcHHHHHH------HhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChH
Confidence 47889999999999999999 443222 135669999999999998775443 11 112223578999
Q ss_pred HHHHHHHHHHHh
Q 016004 187 ALTNYLKELVSY 198 (397)
Q Consensus 187 ~l~~~l~~ll~~ 198 (397)
++|+.|.+.+..
T Consensus 231 d~D~~l~~~l~~ 242 (605)
T 4b9q_A 231 DFDSRLINYLVE 242 (605)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 21
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.18 E-value=1.3e-09 Score=108.02 Aligned_cols=100 Identities=8% Similarity=0.010 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCC-CCCceEEEEecCCCceEEEeeeCceecccccEEeec
Q 016004 105 LPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLL-SETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDL 183 (397)
Q Consensus 105 ~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~-~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~ 183 (397)
+++..+.+.+++ +..|+.-..+..+|+++++ +++.. ......+|||+|++.|+++-+.+|.+... ..+++
T Consensus 166 ~~~~v~n~~~~~-~~AGL~v~~lv~ep~Aaa~------a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~--~~i~~ 236 (419)
T 4a2a_A 166 PLKVYEMFYNFL-QDTVKSPFQLKSSLVSTAE------GVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI--SYVPV 236 (419)
T ss_dssp EHHHHHHHHHHH-HTTSCSCEEEEEHHHHHHH------HHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE--EEESC
T ss_pred eHHHHHHHHHHH-HHcCCcEEEEEEHHHHHHH------HhhccccccCCEEEEEECCCcEEEEEEECCEEEEE--Eeccc
Confidence 344555555554 7778888888889998887 44300 01235799999999999999999988764 45899
Q ss_pred cHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCcc
Q 016004 184 GGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFV 220 (397)
Q Consensus 184 gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v 220 (397)
||+++|+.+...+. .....++++|.++..+
T Consensus 237 GG~~it~dIa~~l~-------~~~~~AE~iK~~~g~a 266 (419)
T 4a2a_A 237 GMKHVIKDVSAVLD-------TSFEESERLIITHGNA 266 (419)
T ss_dssp CHHHHHHHHHHHHT-------CCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHC-------CCHHHHHHHHHHhccC
Confidence 99999999987664 2346689999987654
No 22
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=99.09 E-value=1.3e-10 Score=111.73 Aligned_cols=175 Identities=14% Similarity=0.069 Sum_probs=109.3
Q ss_pred eEEEECCCccEEEEEe--C---CCCCCeeeeccceeeCC---------------CCcccCCcccccccccccccceeeCc
Q 016004 4 IVVLDNGGGLIKAGHG--G---ERDPAVTIPNCMYRPLS---------------SKKFIHPSPTAASATEDLTSAAVRRP 63 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~a--g---~~~P~~~~ps~~~~~~~---------------~~~~~~G~~~~~~~~~~~~~~~~~~p 63 (397)
.|-||+|-.++|+-.. | +..-+..|||.++.... ++.|++|+.+. .. -
T Consensus 9 iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~--~~----------~ 76 (329)
T 4apw_A 9 VMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGV--ED----------S 76 (329)
T ss_dssp EEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSS--SC----------S
T ss_pred EEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCcccc--cc----------c
Confidence 5679999999999653 2 11235789999875321 23445555443 10 0
Q ss_pred ccCCcccCHHHHHHHHHHHhhcccCCCC-CCCeEEEEccCCCC--HHHHHHHHHHhhh-------------hcCCceeee
Q 016004 64 IDRGYLINSDLQRDIWAHLFSSLLHISP-SASSLLLTEPLFAL--PSIQRATDELVFE-------------DFNFKSLFV 127 (397)
Q Consensus 64 ~~~g~i~~~d~~e~ll~~~~~~~l~~~~-~~~pvll~e~~~~~--~~~r~~l~e~lFE-------------~~~vp~v~~ 127 (397)
..... +-+.+..++..++.+.+.... ..-.+++..|.-.- .+.|+++.+.+-. .+.+..+.+
T Consensus 77 ~~~~k--~~~~~~~L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v 154 (329)
T 4apw_A 77 SETSK--TNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITI 154 (329)
T ss_dssp GGGCC--CTTHHHHHHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEE
T ss_pred ccCCc--CchhHHHHHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEE
Confidence 11112 234566666677644544321 12345555553322 1234555555442 133567888
Q ss_pred ecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHh
Q 016004 128 ADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSY 198 (397)
Q Consensus 128 ~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~ 198 (397)
.++++.++++.. . .....+.+|||+|+..|.++.+.+|.+....+..+++||..+++.+.+.+++
T Consensus 155 ~pe~~ga~~~~~-----~-~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 155 KAEGSGVLFLEQ-----E-NFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTD 219 (329)
T ss_dssp EEHHHHHHHHSC-----C-CCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSS
T ss_pred EeccHHHHhhcc-----h-hhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHh
Confidence 999998888321 1 1124566999999999999999999998776677899999999999988775
No 23
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=98.91 E-value=1.7e-09 Score=104.94 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=110.6
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCC-----------------------CCc-ccCCcccccccccccccc
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLS-----------------------SKK-FIHPSPTAASATEDLTSA 58 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~-----------------------~~~-~~~G~~~~~~~~~~~~~~ 58 (397)
-.|-+|+|-.++|+ ..++ . .+.|||.++.... +.+ |++|+.+. .. ..
T Consensus 5 ~iigiD~G~~~~K~-~~~~-~-~~~fPS~v~~~~~~~~~l~~~~~~~~~~~~v~v~~~~~~~y~vG~~A~--~~----~~ 75 (355)
T 3js6_A 5 YVMALDFGNGFVKG-KIND-E-KFVIPSRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLD--KT----TN 75 (355)
T ss_dssp EEEEEEECSSEEEE-EETT-E-EEEEESEEEECCSSCCSSTTTSCCCCSCEEEEETTCTTCCEEESTTHH--HH----CS
T ss_pred EEEEEEcCCCcEEE-ecCC-e-EEEeceeeeecccCcccccccccCCCCceEEEEecCCeEEEEEchhhh--hc----Cc
Confidence 46789999999996 5544 3 5889998874221 112 33444332 00 00
Q ss_pred eeeCcc-cCCcccCHHHHHHHHHHHhhcccC-CCCC--CCeEEEEccCCCCHHHH-HHHHHHhhhh-----------cCC
Q 016004 59 AVRRPI-DRGYLINSDLQRDIWAHLFSSLLH-ISPS--ASSLLLTEPLFALPSIQ-RATDELVFED-----------FNF 122 (397)
Q Consensus 59 ~~~~p~-~~g~i~~~d~~e~ll~~~~~~~l~-~~~~--~~pvll~e~~~~~~~~r-~~l~e~lFE~-----------~~v 122 (397)
.....+ .+.+..+ +....++..++..... .... +-.+++..|.-.....| +++.+.+-.. +.+
T Consensus 76 ~~~~~~~~~~k~~~-~~~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I 154 (355)
T 3js6_A 76 TGKDTASTNDRYDI-KSFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINV 154 (355)
T ss_dssp CCEECCCSTTGGGS-HHHHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEE
T ss_pred ccccccccCCcccC-HHHHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEE
Confidence 111112 2334333 3344444444432111 1111 23566666765544444 4677766532 234
Q ss_pred ceeeeecccccchhhccccCCCCCCC-------CCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHH
Q 016004 123 KSLFVADPPSLVHLYEASRRPYGLLS-------ETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKEL 195 (397)
Q Consensus 123 p~v~~~~~~~la~~~~~~~~a~g~~~-------~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~l 195 (397)
..+.+.++++.|++ +.++.. ...+-+|||+|+..|.++.+.+|.+....+..+++||..+++.+.+.
T Consensus 155 ~~V~v~pE~~~a~~------~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~ 228 (355)
T 3js6_A 155 KGVKIVAQPMGTLL------DLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASH 228 (355)
T ss_dssp EEEEEEEHHHHHHH------HTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHH
T ss_pred EEEEEEeCcHHHHH------HHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHH
Confidence 68899999999999 433111 14566999999999999999999998887778999999999999999
Q ss_pred HHhc
Q 016004 196 VSYR 199 (397)
Q Consensus 196 l~~~ 199 (397)
++++
T Consensus 229 l~~~ 232 (355)
T 3js6_A 229 VSKK 232 (355)
T ss_dssp TC--
T ss_pred HHHh
Confidence 8865
No 24
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=98.85 E-value=1.3e-08 Score=97.17 Aligned_cols=92 Identities=17% Similarity=0.254 Sum_probs=65.1
Q ss_pred hhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCcee-cccccEEeeccHHHHHHHHHHHH
Q 016004 118 EDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFT-VNYAVKRIDLGGKALTNYLKELV 196 (397)
Q Consensus 118 E~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~-~~~~~~~~~~gG~~l~~~l~~ll 196 (397)
+.+++..+.+.++|+++++.+... .....+.+|||+|++.|.++-+.+|.+ +.......++||.++++.+.+.+
T Consensus 136 ~~~~i~~v~~~~e~~aa~~~~~~~-----~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l 210 (320)
T 2zgy_A 136 DTFTIKDVKVMPESIPAGYEVLQE-----LDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDAL 210 (320)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHH-----SCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHT
T ss_pred cEEEEEEEEEecCcHHHHHhhhcc-----ccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHH
Confidence 455677889999999998832210 011456799999999999999999876 44344567999999999999988
Q ss_pred HhcCCCCCChHHHHHHH-HHh
Q 016004 197 SYRAINVMDETFIIDDV-KEK 216 (397)
Q Consensus 197 ~~~~~~~~~~~~~~~~i-Ke~ 216 (397)
.++ ++......++++ |..
T Consensus 211 ~~~--~~~i~~~~ae~~lk~~ 229 (320)
T 2zgy_A 211 SLA--RTKGSSYLADDIIIHR 229 (320)
T ss_dssp TCC--SBGGGHHHHHHHHHTT
T ss_pred HHc--CCCCCHHHHHHHHHHh
Confidence 765 322233445655 443
No 25
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=97.19 E-value=0.0015 Score=65.37 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=50.6
Q ss_pred ceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccc
Q 016004 151 QCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVS 221 (397)
Q Consensus 151 ~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~ 221 (397)
--..+||+|.++|++.-+.+|..+.. ..++.||..+|..+..-|.- .+...+|+||. +..+.
T Consensus 407 LGvaiIDmGGGTTd~sVf~~G~lv~a--~~ip~gG~~VT~DIA~~Lgt------~d~~~AErIK~-YG~A~ 468 (610)
T 2d0o_A 407 RPLAILDLGAGSTDASIINPKGDIIA--THLAGAGDMVTMIIARELGL------EDRYLAEEIKK-YPLAK 468 (610)
T ss_dssp SSEEEEEECSSEEEEEEECTTCCEEE--EEEECSHHHHHHHHHHHHTC------CCHHHHHHHHH-SCEEE
T ss_pred CCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHHhCC------CCHHHHHHhcc-cCcee
Confidence 34589999999999999999988775 45899999999999988862 33677999999 76553
No 26
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=97.06 E-value=0.0015 Score=65.48 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=50.5
Q ss_pred ceEEEEecCCCceEEEeeeCceecccccEEeeccHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCccc
Q 016004 151 QCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKALTNYLKELVSYRAINVMDETFIIDDVKEKLCFVS 221 (397)
Q Consensus 151 ~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l~~~l~~ll~~~~~~~~~~~~~~~~iKe~~~~v~ 221 (397)
--..+||+|.++|++.-+.+|..+.. ..++.||..+|..+..-|.- .+...+|+||. +..+.
T Consensus 409 lGvaiIDmGgGTTd~sVf~~g~lv~a--~~ip~gG~~VT~DIA~~Lg~------~d~~~AErIK~-YG~A~ 470 (607)
T 1nbw_A 409 APLAILDLGAGSTDAAIVNAEGQITA--VHLAGAGNMVSLLIKTELGL------EDLSLAEAIKK-YPLAK 470 (607)
T ss_dssp SSEEEEEECSSEEEEEEECSSSCEEE--EEEECCHHHHHHHHHHHHTC------SCHHHHHHHHH-SCEEE
T ss_pred CCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHHhCC------CCHHHHHHhcc-cCcee
Confidence 34589999999999999999988775 45899999999999988862 33677999999 76553
No 27
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=91.65 E-value=0.34 Score=45.52 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=48.2
Q ss_pred HHHHHHHhhhhcCCceeeeecc---cccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccH
Q 016004 109 QRATDELVFEDFNFKSLFVADP---PSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGG 185 (397)
Q Consensus 109 r~~l~e~lFE~~~vp~v~~~~~---~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG 185 (397)
++.+.+-+-+..|++ +-++.. +-++.+... +++......++|||+|.++|.++-+-+|.+... ..+++|.
T Consensus 91 ~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~----~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~ 163 (315)
T 3mdq_A 91 KQVLIDRIKKEVNID-VEVIDGAREAELIFRGVQ----QAVPMEDHISLAMDIGGGSVEFIIGNKNEILWK--QSFEIGG 163 (315)
T ss_dssp HHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHH----HHSCCTTCCEEEEEECSSCEEEEEECSSCEEEE--EEESCCH
T ss_pred HHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHHHH----hcCCCCCCCEEEEEeCCCceEEEEEECCeEeee--EEEechh
Confidence 344555566666764 444443 222222111 111111357899999999999999998877653 5689998
Q ss_pred HHHHHHH
Q 016004 186 KALTNYL 192 (397)
Q Consensus 186 ~~l~~~l 192 (397)
-.+++.+
T Consensus 164 vrl~e~f 170 (315)
T 3mdq_A 164 QRLIDRF 170 (315)
T ss_dssp HHHHHHS
T ss_pred hHHHHHh
Confidence 8888764
No 28
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=91.10 E-value=0.54 Score=44.12 Aligned_cols=81 Identities=19% Similarity=-0.009 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHH
Q 016004 108 IQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKA 187 (397)
Q Consensus 108 ~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~ 187 (397)
.++.+.+.+-+..|++ +-++...-=+.|.+... ..++. ...+++|||+|.++|.++-.-+|.+.. ...+++|+-.
T Consensus 98 N~~~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv-~~~l~-~~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~~G~v~ 172 (315)
T 1t6c_A 98 NAEEFLERVKREVGLV-VEVITPEQEGRYAYLAV-AYSLK-PEGEVCVVDQGGGSTEYVFGKGYKVRE--VISLPIGIVN 172 (315)
T ss_dssp THHHHHHHHHHHTCCC-EEECCHHHHHHHHHHHH-HHHTC-CCSEEEEEEEETTEEEEEEEETTEEEE--EEEECCCHHH
T ss_pred CHHHHHHHHHHHHCCC-EEEcCHHHHHHHHHHHH-Hhhcc-cCCCEEEEEeCCCcEEEEEEeCCceee--EEEEeccHHH
Confidence 3455666666667764 44444332222211000 01111 145799999999999999998887754 3568999999
Q ss_pred HHHHHH
Q 016004 188 LTNYLK 193 (397)
Q Consensus 188 l~~~l~ 193 (397)
+++.+.
T Consensus 173 l~e~~~ 178 (315)
T 1t6c_A 173 LTETFF 178 (315)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 988753
No 29
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=90.65 E-value=0.98 Score=45.35 Aligned_cols=79 Identities=11% Similarity=-0.042 Sum_probs=48.4
Q ss_pred HHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHH
Q 016004 109 QRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKAL 188 (397)
Q Consensus 109 r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l 188 (397)
++.+.+-+-+..|++ +-+++..-=+-|.+... ..++. ....++|||||.++|.++-.-+|.+.. ...+++|.-.+
T Consensus 98 ~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv-~~~~~-~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl 172 (513)
T 1u6z_A 98 ATDFLKRAEKVIPYP-IEIISGNEEARLIFMGV-EHTQP-EKGRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSF 172 (513)
T ss_dssp HHHHHHHHTTTCSSC-EEECCHHHHHHHHHHHH-HHHSC-CCSCEEEEEECSSCEEEEEEETTEEEE--EEEESCCHHHH
T ss_pred HHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHH-Hhhcc-CCCCEEEEEECCCcEEEEEEeCCeeeE--EEEEeccHHHH
Confidence 455666666777774 45554332222211000 01110 122699999999999999888887754 35689999888
Q ss_pred HHHH
Q 016004 189 TNYL 192 (397)
Q Consensus 189 ~~~l 192 (397)
++.+
T Consensus 173 te~f 176 (513)
T 1u6z_A 173 AQLY 176 (513)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 30
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=89.53 E-value=0.55 Score=44.65 Aligned_cols=79 Identities=14% Similarity=-0.004 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhcCCceeeeecc---cccchhhccccCCCCCCC--CCceEEEEecCCCceEEEeeeC--ceec--ccccE
Q 016004 109 QRATDELVFEDFNFKSLFVADP---PSLVHLYEASRRPYGLLS--ETQCSLVVDCGFSFTHAAPVFQ--NFTV--NYAVK 179 (397)
Q Consensus 109 r~~l~e~lFE~~~vp~v~~~~~---~~la~~~~~~~~a~g~~~--~~~tglVVDiG~~~t~v~pV~d--G~~~--~~~~~ 179 (397)
++.+.+-+-+..|++ +-+++. +.++..... +++.. ....++|||+|.++|.++-+.+ +.+. .....
T Consensus 104 ~~~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~----~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~ 178 (343)
T 3cer_A 104 REEFEDEIERILGVR-PEVIPGTEEADLSFLGAT----SVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAF 178 (343)
T ss_dssp HHHHHHHHHHHHSSC-CEECCHHHHHHHHHHHHH----SSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEE
T ss_pred HHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHH----hhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeE
Confidence 445566666666764 444443 233322111 11111 1356999999999999998876 4331 11346
Q ss_pred EeeccHHHHHHHH
Q 016004 180 RIDLGGKALTNYL 192 (397)
Q Consensus 180 ~~~~gG~~l~~~l 192 (397)
.+++|+-.+++.+
T Consensus 179 SlplG~v~lt~~~ 191 (343)
T 3cer_A 179 SMNIGSVRMTERH 191 (343)
T ss_dssp EESCCHHHHHHHT
T ss_pred EEehhHHHHHHHh
Confidence 7899999999875
No 31
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=89.13 E-value=0.98 Score=45.31 Aligned_cols=77 Identities=10% Similarity=-0.078 Sum_probs=46.9
Q ss_pred HHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCceecccccEEeeccHHHH
Q 016004 109 QRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNYAVKRIDLGGKAL 188 (397)
Q Consensus 109 r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~~~~~~~~gG~~l 188 (397)
++.+.+-+-+..|++ +-+++..-=|-+.+... ..++ ....++|||||.++|.++-+-+|.+... ..+++|.-.+
T Consensus 102 ~~~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv-~~~~--~~~~~lvvDIGGGStEl~~~~~~~~~~~--~Sl~lG~vrl 175 (508)
T 3hi0_A 102 GPDFIREAEAILGCE-IEVLSGEKEALYSAYGV-ISGF--YQPDGIAGDLGGGSLELIDIKDKSCGEG--ITLPLGGLRL 175 (508)
T ss_dssp HHHHHHHHHHHHTSC-EEECCHHHHHHHHHHHH-HHHS--SSCEEEEEEECSSCEEEEEEETTEECCC--EEESCCHHHH
T ss_pred HHHHHHHHHHHHCCC-eEEecHHHHHHHHHHHH-HhcC--CCCCeEEEEeCCCceEEEEeeCCeeeeE--EEecceEEeh
Confidence 344555555666774 45544332222211000 1111 1346899999999999999999887653 5689998877
Q ss_pred HHH
Q 016004 189 TNY 191 (397)
Q Consensus 189 ~~~ 191 (397)
++.
T Consensus 176 ~e~ 178 (508)
T 3hi0_A 176 SEQ 178 (508)
T ss_dssp HHH
T ss_pred hhc
Confidence 763
No 32
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=86.52 E-value=0.47 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=23.5
Q ss_pred ceEEEEecCCCceEEEeeeCceecc
Q 016004 151 QCSLVVDCGFSFTHAAPVFQNFTVN 175 (397)
Q Consensus 151 ~tglVVDiG~~~t~v~pV~dG~~~~ 175 (397)
.++|+||||.+.|+|+|+.+|.++.
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~ 151 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVA 151 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECC
T ss_pred CCEEEEEcCcchhhhhhhcCCeecc
Confidence 5799999999999999999999977
No 33
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=84.24 E-value=0.42 Score=43.61 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecCCCCC
Q 016004 348 HSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEEYS 394 (397)
Q Consensus 348 r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~ 394 (397)
+....+.|+|+||.+..|+++++|++.+. .+++.|++|.
T Consensus 203 ~~~~~~~vvl~GGva~n~~lr~~l~~~~g--------~~~~~p~~p~ 241 (276)
T 4ehu_A 203 RIGVQRNVVMVGGVARNSGIVRAMAREIN--------TEIIVPDIPQ 241 (276)
T ss_dssp HHCCCSSEEEESGGGGCHHHHHHHHHHHT--------SCEECCSSGG
T ss_pred hcccCCeEEEecCccchHHHHHHHHHHHC--------CCeeeCCCcc
Confidence 33445789999999999999999998872 3455555553
No 34
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=79.08 E-value=19 Score=32.52 Aligned_cols=19 Identities=37% Similarity=0.254 Sum_probs=15.9
Q ss_pred eEEEECCCccEEEEEeCCC
Q 016004 4 IVVLDNGGGLIKAGHGGER 22 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~ 22 (397)
.++||+|--+||.|+-.++
T Consensus 2 lL~IDIGNT~ik~gl~~~~ 20 (268)
T 2h3g_X 2 IFVLDVGNTNAVLGVFEEG 20 (268)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEECcCcEEEEEEECC
Confidence 3789999999999987544
No 35
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=79.06 E-value=39 Score=30.99 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=39.6
Q ss_pred HHhhhhc-CCceeeeecccccchhhcccc-CCCCCCCCCceEEEEecCCCceEEEeeeCceeccc
Q 016004 114 ELVFEDF-NFKSLFVADPPSLVHLYEASR-RPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (397)
Q Consensus 114 e~lFE~~-~vp~v~~~~~~~la~~~~~~~-~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (397)
+.+=+.| ++| |++.++.-++++.+... .+.+ ..+.++|-+|.+ +-..-|.+|.++..
T Consensus 111 ~~l~~~~~~~p-V~v~NDa~aaalaE~~~g~~~~----~~~~v~l~~GtG-iG~gii~~G~l~~G 169 (321)
T 3r8e_A 111 EILRSEFPHIH-FKIENDAKCAALGEYYFGENKR----MQTFILLALGTG-VGSGVMMNGKLFIG 169 (321)
T ss_dssp HHHHHHCTTSE-EEEEEHHHHHHHHHHHHSTTTT----CSSEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHHHHHcCCCC-EEEEchHHHHHHHHHHhCCCCC----CCcEEEEEECCc-eEEEEEECCEEecC
Confidence 3344567 887 88999998887743211 1223 678899999975 66777889988763
No 36
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=72.09 E-value=53 Score=29.15 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=16.1
Q ss_pred eEEEECCCccEEEEEeCCC
Q 016004 4 IVVLDNGGGLIKAGHGGER 22 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~ 22 (397)
.++||+|--++|.|+-.++
T Consensus 5 ~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 5 YLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp EEEEEECSSEEEEEEESSS
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4789999999999987644
No 37
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=68.27 E-value=49 Score=29.81 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.3
Q ss_pred CCCeEEEECCCccEEEEEeCCC
Q 016004 1 MSNIVVLDNGGGLIKAGHGGER 22 (397)
Q Consensus 1 ~~~~vViD~Gs~~ik~G~ag~~ 22 (397)
|+-.++||+|.-+||+|+-.++
T Consensus 1 M~MlL~IDIGNT~iK~gl~d~~ 22 (266)
T 3djc_A 1 MSLILCIDVGNSHIYGGVFDGD 22 (266)
T ss_dssp --CEEEEEECSSEEEEEEEETT
T ss_pred CceEEEEEECCCeEEEEEEECC
Confidence 5567999999999999987554
No 38
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=46.86 E-value=13 Score=35.23 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=25.7
Q ss_pred CceEEEEecCCCceEEEeeeC--ceecccccEEeeccH
Q 016004 150 TQCSLVVDCGFSFTHAAPVFQ--NFTVNYAVKRIDLGG 185 (397)
Q Consensus 150 ~~tglVVDiG~~~t~v~pV~d--G~~~~~~~~~~~~gG 185 (397)
..|.+|||+|.++|.++-... +.+.......+++||
T Consensus 139 ~~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~ 176 (353)
T 3aap_A 139 NKSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYG 176 (353)
T ss_dssp SSCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETT
T ss_pred cccEEEEEeCCCceEEEEecCCccccCCCceEEEEECC
Confidence 357999999999999987644 333333345677776
No 39
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=43.13 E-value=11 Score=34.70 Aligned_cols=39 Identities=15% Similarity=-0.028 Sum_probs=29.6
Q ss_pred hccEEEecC-ccCCCChHHHHHhhccccCCCCccEEEecCCCCCC
Q 016004 352 YESIILTGG-STLFPRFAERLERELRPLVPDDYQVKITTQEEYSH 395 (397)
Q Consensus 352 ~~nIvltGG-~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~~~~~~ 395 (397)
.++|+++|| .+..|++.++|.+.+.. ...+++.++++++
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~-----~~~~~~~p~~~~~ 276 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVL-----RGCKPYYVENGAF 276 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHH-----TTCEEEECTTGGG
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhh-----CCceEEECCCccH
Confidence 457999999 99999999999976532 1456777777654
No 40
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=34.37 E-value=1.2e+02 Score=27.70 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred eEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCCcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHHHHh
Q 016004 4 IVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHLF 83 (397)
Q Consensus 4 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~~~~ 83 (397)
.+.||+|..++|++....+. ... ...+.|.... +.+.+.+.+..++
T Consensus 26 ~lgiDiGgt~i~~~l~d~~G-~il------------------------------~~~~~~~~~~---~~~~~~~~i~~~i 71 (327)
T 4db3_A 26 YYGFDVGGTKIEFGAFNEKL-ERV------------------------------ATERVPTPTD---DYPLLLETIAGLV 71 (327)
T ss_dssp EEEEEECSSEEEEEEECTTC-CEE------------------------------EEEEEECCTT---CHHHHHHHHHHHH
T ss_pred EEEEEECCCEEEEEEEeCCC-cEE------------------------------EEEEecCCCC---CHHHHHHHHHHHH
Q ss_pred hcccCCCCCCCeEEEEccCCCCHH------------HHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCc
Q 016004 84 SSLLHISPSASSLLLTEPLFALPS------------IQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQ 151 (397)
Q Consensus 84 ~~~l~~~~~~~pvll~e~~~~~~~------------~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~ 151 (397)
.+.+.....-.-+-+..|-....+ ..-.+.+.+=+.|++| |++.++.-++++.+. -.|......
T Consensus 72 ~~~~~~~~~~~gigi~~pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~~~~~p-V~v~NDa~aaalgE~---~~g~~~~~~ 147 (327)
T 4db3_A 72 AKYDQEFACEGKIGLGLPGMEDADDATVLTVNVPAAKGKPLRADLEAKIGRS-VKIENDANCFALSEA---WDEELQDAP 147 (327)
T ss_dssp HHHHHHHTSCCEEEEEESEEECTTTCCEEESSSGGGTTSCHHHHHHHHHSSC-CEEEEHHHHHHHHHH---TSTTTTTCS
T ss_pred HHHHHhcCCccEEEEEeeccEeCCCCEEEcCCCccccCCCHHHHHHHHHCCC-EEEecchhHHHHHHH---HhCCCCCCC
Q ss_pred eEEEEecCCCceEEEeeeCceecc
Q 016004 152 CSLVVDCGFSFTHAAPVFQNFTVN 175 (397)
Q Consensus 152 tglVVDiG~~~t~v~pV~dG~~~~ 175 (397)
+.++|-+|.+ +-..-|.+|.++.
T Consensus 148 ~~~~l~~GtG-iG~gii~~G~l~~ 170 (327)
T 4db3_A 148 SVMGLILGTG-FGGGLIYEGKVFS 170 (327)
T ss_dssp EEEEEEESSS-EEEEEEETTEECC
T ss_pred cEEEEEeCcc-ceEEEEECCEEee
No 41
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=34.00 E-value=2.5e+02 Score=24.90 Aligned_cols=70 Identities=10% Similarity=-0.032 Sum_probs=45.0
Q ss_pred eEEEEccCCCCHHHHHHHHHHhhhhcCC-ceeeeecccccchhhccccCC-CCCCCCCceEEEEecCCCceEEEeeeCce
Q 016004 95 SLLLTEPLFALPSIQRATDELVFEDFNF-KSLFVADPPSLVHLYEASRRP-YGLLSETQCSLVVDCGFSFTHAAPVFQNF 172 (397)
Q Consensus 95 pvll~e~~~~~~~~r~~l~e~lFE~~~v-p~v~~~~~~~la~~~~~~~~a-~g~~~~~~tglVVDiG~~~t~v~pV~dG~ 172 (397)
.+-+..|-.. ......+.+.+=+.++. -.+.+.++..++++ + .| ..++++|=+|.+..-..-+.+|.
T Consensus 62 ~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~------ge~g----~~~~v~v~~GTGigg~~i~~~G~ 130 (291)
T 1zbs_A 62 AVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAAR------ALCG----DSEGIACILGTGSNSCLFDGREI 130 (291)
T ss_dssp EEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHH------HHTT----TSCEEEEEESSSEEEEEECSSSE
T ss_pred EEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHH------hhcC----CCCcEEEEecCChheEEECCCCc
Confidence 4555555443 22223455555556664 25999999999999 4 34 67788888887765455556998
Q ss_pred ecc
Q 016004 173 TVN 175 (397)
Q Consensus 173 ~~~ 175 (397)
...
T Consensus 131 ~~~ 133 (291)
T 1zbs_A 131 KAN 133 (291)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 42
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=33.77 E-value=58 Score=29.44 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhccccCCCCccEEEecC
Q 016004 332 LAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQ 390 (397)
Q Consensus 332 l~~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL~~~~p~~~~~~v~~~ 390 (397)
|...|.+.+..++++ .|||.||.+..+.|.+++++.|....... ++|..+
T Consensus 225 La~~i~~l~~~~~p~-------~IvlgGgi~~~~~~~~~l~~~l~~~~~~~--~~i~~s 274 (297)
T 4htl_A 225 ICTGLYNLIYLFDPT-------HIFIGGGITSRPTFIAELKHHMESFGLRD--TIIETA 274 (297)
T ss_dssp HHHHHHHHHHHHCCS-------EEEEESGGGGSTTHHHHHHHHHTTTCCTT--CEEEEC
T ss_pred HHHHHHHHHHHhCCC-------EEEEeCcccccHHHHHHHHHHHHHhccCC--CeEEEC
Confidence 566666766666664 49999999988999999999998655433 344443
No 43
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=33.75 E-value=74 Score=28.86 Aligned_cols=55 Identities=7% Similarity=0.020 Sum_probs=37.6
Q ss_pred hhhhcCCceeeeecccccchhhcccc-CCCCCCCCCceEEEEecCCCceEEEeeeCceeccc
Q 016004 116 VFEDFNFKSLFVADPPSLVHLYEASR-RPYGLLSETQCSLVVDCGFSFTHAAPVFQNFTVNY 176 (397)
Q Consensus 116 lFE~~~vp~v~~~~~~~la~~~~~~~-~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~~~~~ 176 (397)
+=+.|++| +++.++.-++++.+... .+.+ ..+.++|-+|.+ +-..-|.+|.++..
T Consensus 104 l~~~~~~p-v~v~ND~~aaa~~e~~~g~~~~----~~~~~~l~~GtG-iG~giv~~G~l~~G 159 (326)
T 2qm1_A 104 IESALGIP-FALDNDANVAALGERWKGAGEN----NPDVIFITLGTG-VGGGIVAAGKLLHG 159 (326)
T ss_dssp HHHHHCSC-EEEEEHHHHHHHHHHHHSTTTT----CSCEEEEEESSS-EEEEEEETTEECCC
T ss_pred HHHHhCCC-EEEecHHHHHHHHHHHhCCCCC----CCcEEEEEECCc-eEEEEEECCEEeec
Confidence 33456887 88899998888733210 0123 678899999976 66777789988763
No 44
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=30.35 E-value=14 Score=33.34 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=22.1
Q ss_pred ccEEEecCccCCCChHHHHHhhcc
Q 016004 353 ESIILTGGSTLFPRFAERLERELR 376 (397)
Q Consensus 353 ~nIvltGG~s~i~G~~~RL~~eL~ 376 (397)
+.|+++||.+.-+++.+.+.+.|.
T Consensus 210 ~~i~~~GG~a~n~~~~~~~~~~lg 233 (270)
T 1hux_A 210 KDVVMTGGVAQNYGVRGALEEGLG 233 (270)
T ss_dssp SSEEEESGGGGCHHHHHHHHHHHC
T ss_pred CeEEEeCccccCHHHHHHHHHHHC
Confidence 579999999999999999999884
No 45
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=27.52 E-value=33 Score=32.62 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=26.9
Q ss_pred HHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhc
Q 016004 334 ECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLEREL 375 (397)
Q Consensus 334 ~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL 375 (397)
..|.+++.+++.. -..|++|||++.=|-|.+||++.|
T Consensus 271 ~sIa~~~~~~~~~-----~~~v~vcGGGa~N~~Lm~~L~~~l 307 (371)
T 3qbx_A 271 RSISESLLDAQPD-----CEEVLVCGGGAFNTALMKRLAMLM 307 (371)
T ss_dssp HHHHHHHHHHCTT-----CCEEEEESGGGGCHHHHHHHHHHC
T ss_pred HHHHHHHHhccCC-----CceEEEECCccCcHHHHHHHHHhC
Confidence 4444445544431 246999999999999999999887
No 46
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=25.14 E-value=3.5e+02 Score=23.80 Aligned_cols=62 Identities=10% Similarity=-0.034 Sum_probs=38.4
Q ss_pred eEEEEccCCCCHHHHHHHHHHhhhhcCCceeeeecccccchhhccccCCCCCCCCCceEEEEecCCCceEEEeeeCce
Q 016004 95 SLLLTEPLFALPSIQRATDELVFEDFNFKSLFVADPPSLVHLYEASRRPYGLLSETQCSLVVDCGFSFTHAAPVFQNF 172 (397)
Q Consensus 95 pvll~e~~~~~~~~r~~l~e~lFE~~~vp~v~~~~~~~la~~~~~~~~a~g~~~~~~tglVVDiG~~~t~v~pV~dG~ 172 (397)
.+-+..|-.....-...+.+.+=+ +++| +++.++.-++++ +.. +..++++|-+|.+. |.+|.
T Consensus 62 ~igi~~~G~~~~~~~~~l~~~l~~-~~~p-v~v~ND~~aaa~------~e~---~~~~~v~l~~GTG~-----i~~g~ 123 (299)
T 2e2o_A 62 VVGMGVAGLDSKFDWENFTPLASL-IAPK-VIIQHDGVIALF------AET---LGEPGVVVIAGTGS-----VVEGY 123 (299)
T ss_dssp EEEEEETTCCSHHHHHHHHHHHTT-SSSE-EEEEEHHHHHHH------HHH---TTSCEEEEEESSSE-----EEEEE
T ss_pred EEEEEcCCCCchhHHHHHHHHHHh-CCCC-EEEeCcHHHHHh------hcc---CCCCeEEEEecCCE-----EEEEE
Confidence 455666655443333445555544 7765 788888888888 321 14678888899873 45565
No 47
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=24.54 E-value=3.6e+02 Score=23.92 Aligned_cols=128 Identities=11% Similarity=-0.017 Sum_probs=67.7
Q ss_pred CeEEEECCCccEEEEEeCCCCCCeeeeccceeeCCCCcccCCcccccccccccccceeeCcccCCcccCHHHHHHHHHHH
Q 016004 3 NIVVLDNGGGLIKAGHGGERDPAVTIPNCMYRPLSSKKFIHPSPTAASATEDLTSAAVRRPIDRGYLINSDLQRDIWAHL 82 (397)
Q Consensus 3 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~g~i~~~d~~e~ll~~~ 82 (397)
-.+.||+|+..+|++....+. ...-. .. ... .+...+.-.-|+.+...++.+
T Consensus 12 ~~lGiDiGgT~i~~~l~d~~G-~il~~-----~~---------------~~~-------~~~~~~~~~~~~~l~~~i~~~ 63 (305)
T 1zc6_A 12 YLIGVDGGGTGTRIRLHASDG-TPLAM-----AE---------------GGA-------SALSQGIAKSWQAVLSTLEAA 63 (305)
T ss_dssp EEEEEEECSSCEEEEEEETTC-CEEEE-----EE---------------ESC-------CCGGGCHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCccceEEEEEcCCC-CEEEE-----Ee---------------CCC-------CCcccCHHHHHHHHHHHHHHH
Confidence 478899999999999876543 22110 00 000 000011111144555555555
Q ss_pred hhcccCCCCCC---CeEEEEccCCC-CHHHHHHHHHHhhhhc--CCceeeeecccccchhhccccCC-CCCCCCCceEEE
Q 016004 83 FSSLLHISPSA---SSLLLTEPLFA-LPSIQRATDELVFEDF--NFKSLFVADPPSLVHLYEASRRP-YGLLSETQCSLV 155 (397)
Q Consensus 83 ~~~~l~~~~~~---~pvll~e~~~~-~~~~r~~l~e~lFE~~--~vp~v~~~~~~~la~~~~~~~~a-~g~~~~~~tglV 155 (397)
+.+ .+.++.+ ..+-+..|-.. +...+. + =+.| ++| +++.++.-++++ + .+ ..++++
T Consensus 64 l~~-~~~~~~~i~~~~igig~pG~v~~~~~~~-l----~~~~~~~~p-v~v~NDa~aaa~------ge~~----~~~~v~ 126 (305)
T 1zc6_A 64 FQQ-AGLPAAPASACAIGLGLSGVHNRQWAGE-F----ESQAPGFAR-LSLATDGYTTLL------GAHG----GQPGII 126 (305)
T ss_dssp HHH-TTCCCCCGGGEEEEEEESCCCTTSHHHH-H----HHTCCCCSE-EEEECHHHHHHH------HHTT----TSSEEE
T ss_pred HHh-cCCChhhhccceEEEEecCCCchHHHHH-H----HHhCCCCce-EEEECCHHHHHH------hhcC----CCCeEE
Confidence 542 2333333 23556665443 333322 2 2234 444 899999999888 4 23 467888
Q ss_pred EecCCCceEEEeeeCceecc
Q 016004 156 VDCGFSFTHAAPVFQNFTVN 175 (397)
Q Consensus 156 VDiG~~~t~v~pV~dG~~~~ 175 (397)
|-+|.+..-..-+.+|....
T Consensus 127 v~~GTGigg~~i~~~G~~~~ 146 (305)
T 1zc6_A 127 VALGTGSIGEALYPDGSHRE 146 (305)
T ss_dssp EEESSSEEEEEECTTSCEEE
T ss_pred EEecCCeEEEEEeCCCcEEE
Confidence 88997764233233887543
No 48
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=23.75 E-value=3.8e+02 Score=24.17 Aligned_cols=88 Identities=10% Similarity=-0.033 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcccCCCCC-C-CeEEEEccCCCCHHHHHHHHHHhhhhcC---CceeeeecccccchhhccccCCCCC
Q 016004 72 SDLQRDIWAHLFSSLLHISPS-A-SSLLLTEPLFALPSIQRATDELVFEDFN---FKSLFVADPPSLVHLYEASRRPYGL 146 (397)
Q Consensus 72 ~d~~e~ll~~~~~~~l~~~~~-~-~pvll~e~~~~~~~~r~~l~e~lFE~~~---vp~v~~~~~~~la~~~~~~~~a~g~ 146 (397)
|+.+...++.++.+ .+..+. + .-+-+..|-.........+.+.+=+.|+ .| +++.++.-++++ +..
T Consensus 49 ~~~i~~~i~~~~~~-~~~~~~~~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~p-v~v~NDa~aaa~------a~~- 119 (347)
T 2ch5_A 49 VERINEMVNRAKRK-AGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSES-YLITTDAAGSIA------TAT- 119 (347)
T ss_dssp HHHHHHHHHHHHHH-HTCCTTCCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSC-EEEEEHHHHHHH------HHC-
T ss_pred HHHHHHHHHHHHHh-cCCCcccceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCce-EEEECcHHHHHH------hhC-
Confidence 45555556555543 233332 2 3566667766555444456666656665 55 888899988888 421
Q ss_pred CCCCceEEEEecCCCceEEEee-eCce
Q 016004 147 LSETQCSLVVDCGFSFTHAAPV-FQNF 172 (397)
Q Consensus 147 ~~~~~tglVVDiG~~~t~v~pV-~dG~ 172 (397)
..++++|-+|.+.-- ..| .+|.
T Consensus 120 ---~~~~v~v~~GTGig~-~~v~~~G~ 142 (347)
T 2ch5_A 120 ---PDGGVVLISGTGSNC-RLINPDGS 142 (347)
T ss_dssp ---SSCEEEEEESSSEEE-EEECTTSC
T ss_pred ---CCCcEEEEEcCCcee-EEEcCCCC
Confidence 356788888865433 233 3554
No 49
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=23.10 E-value=37 Score=32.27 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=26.8
Q ss_pred HHHHHHHHhcChhhHHHhhccEEEecCccCCCChHHHHHhhc
Q 016004 334 ECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLEREL 375 (397)
Q Consensus 334 ~~I~~~i~~~~~d~r~~l~~nIvltGG~s~i~G~~~RL~~eL 375 (397)
..|.+++.+++ . ...|++|||++.=|-|.+||++.|
T Consensus 278 ~sIa~~~~~~~-~-----~~~v~vcGGGa~N~~Lm~~L~~~l 313 (370)
T 3cqy_A 278 HSIAQDILKLA-Q-----EGELFVCGGGAFNAELMQRLAALL 313 (370)
T ss_dssp HHHHHHHHHHC-S-----SEEEEEESGGGGCHHHHHHHHHHC
T ss_pred HHHHHHHHhcC-C-----CCEEEEECCCcCCHHHHHHHHHhC
Confidence 44555555554 1 236999999999999999999877
No 50
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=22.42 E-value=88 Score=29.51 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHhcCh-hhHHHhhccEEEecC-ccCCCChHHHHHhhcc
Q 016004 331 GLAECIVRAVNSCHP-YLHSVLYESIILTGG-STLFPRFAERLERELR 376 (397)
Q Consensus 331 ~l~~~I~~~i~~~~~-d~r~~l~~nIvltGG-~s~i~G~~~RL~~eL~ 376 (397)
+|..+|.+.|..... -.++.=.++|+++|| .+.-|++.+.|+..|.
T Consensus 284 gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~ 331 (360)
T 2i7n_A 284 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMD 331 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHh
Confidence 344444444433321 124444568999999 9999999999999884
No 51
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=20.96 E-value=66 Score=32.82 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCCeEEEEccCCCCHHHHHHHHHHhhhhcCC
Q 016004 73 DLQRDIWAHLFSSLLHISPSASSLLLTEPLFALPSIQRATDELVFEDFNF 122 (397)
Q Consensus 73 d~~e~ll~~~~~~~l~~~~~~~pvll~e~~~~~~~~r~~l~e~lFE~~~v 122 (397)
+.++.+=+|+| ..+++||||+.....+.++..+|++++-|.||=
T Consensus 236 ~v~~~I~~~AF------~~s~yPvilslE~Hc~~~qQ~~ma~~~~~~~gd 279 (624)
T 1djx_A 236 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 279 (624)
T ss_dssp HHHHHHHHHTT------TSCSSCEEEEEEEECCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhcc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 34444555555 348999999988888999999999999888874
No 52
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=20.71 E-value=1.8e+02 Score=26.03 Aligned_cols=48 Identities=15% Similarity=0.009 Sum_probs=31.9
Q ss_pred EEEecCCCceEEEeeeCceecccccEEe-eccHHHHHHHHHHHHHhcCC
Q 016004 154 LVVDCGFSFTHAAPVFQNFTVNYAVKRI-DLGGKALTNYLKELVSYRAI 201 (397)
Q Consensus 154 lVVDiG~~~t~v~pV~dG~~~~~~~~~~-~~gG~~l~~~l~~ll~~~~~ 201 (397)
|+||+|.+.+...-+-++..+....... ....+.+...+.+++...+.
T Consensus 5 L~IDIGNT~iK~gl~d~~~l~~~~r~~T~~~t~de~~~~l~~ll~~~~~ 53 (266)
T 3djc_A 5 LCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKSVLRENNC 53 (266)
T ss_dssp EEEEECSSEEEEEEEETTEEEEEEEEECSCCCHHHHHHHHHHHHHTTTC
T ss_pred EEEEECCCeEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 8999999888887776665554432222 24466676777788876554
Done!