Query 016006
Match_columns 397
No_of_seqs 170 out of 746
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02435 probable UDP-N-acetyl 100.0 5E-113 1E-117 873.3 35.5 395 2-397 99-493 (493)
2 PTZ00339 UDP-N-acetylglucosami 100.0 1E-102 2E-107 799.6 34.9 384 2-392 89-478 (482)
3 KOG2388 UDP-N-acetylglucosamin 100.0 1.6E-94 3.4E-99 719.6 22.1 383 2-396 80-470 (477)
4 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1.4E-87 3E-92 662.0 28.5 315 5-327 1-323 (323)
5 cd00897 UGPase_euk Eukaryotic 100.0 1.6E-81 3.5E-86 609.9 26.3 285 18-328 2-289 (300)
6 cd06424 UGGPase UGGPase cataly 100.0 5E-80 1.1E-84 601.4 28.7 295 20-326 1-314 (315)
7 PLN02474 UTP--glucose-1-phosph 100.0 1.1E-78 2.5E-83 617.3 28.5 334 12-383 74-410 (469)
8 PF01704 UDPGP: UTP--glucose-1 100.0 3.1E-79 6.8E-84 619.4 14.2 297 9-328 46-347 (420)
9 PLN02830 UDP-sugar pyrophospho 100.0 1.9E-74 4.1E-79 604.2 32.8 365 3-378 114-509 (615)
10 COG4284 UDP-glucose pyrophosph 100.0 1.8E-73 3.8E-78 570.1 23.8 358 11-395 97-469 (472)
11 cd04180 UGPase_euk_like Eukary 100.0 6.5E-67 1.4E-71 503.3 26.7 261 20-325 1-266 (266)
12 KOG2638 UDP-glucose pyrophosph 100.0 3.4E-57 7.3E-62 441.4 22.7 292 9-328 95-390 (498)
13 COG1207 GlmU N-acetylglucosami 99.8 4.2E-19 9E-24 176.4 18.9 269 19-378 2-286 (460)
14 PRK14356 glmU bifunctional N-a 99.3 2.7E-10 5.9E-15 117.7 24.0 249 19-356 5-258 (456)
15 PRK15480 glucose-1-phosphate t 99.3 7E-11 1.5E-15 115.8 17.7 182 19-266 3-187 (292)
16 PRK05293 glgC glucose-1-phosph 99.3 1.1E-10 2.5E-15 117.8 19.7 197 18-268 2-205 (380)
17 PRK14359 glmU bifunctional N-a 99.3 6.8E-10 1.5E-14 113.7 23.5 243 19-356 2-248 (430)
18 TIGR02092 glgD glucose-1-phosp 99.3 5.5E-11 1.2E-15 119.7 14.7 193 18-268 1-203 (369)
19 TIGR01207 rmlA glucose-1-phosp 99.3 1.1E-10 2.4E-15 114.0 16.2 178 22-265 2-182 (286)
20 TIGR01105 galF UTP-glucose-1-p 99.3 1.2E-10 2.7E-15 114.3 16.5 189 19-266 3-225 (297)
21 PRK00844 glgC glucose-1-phosph 99.2 2.5E-10 5.5E-15 116.7 16.8 203 18-268 4-212 (407)
22 PF00483 NTP_transferase: Nucl 99.2 2E-10 4.4E-15 108.5 13.9 184 22-268 2-192 (248)
23 PRK14357 glmU bifunctional N-a 99.2 9.2E-10 2E-14 113.5 19.7 177 21-268 2-179 (448)
24 COG1208 GCD1 Nucleoside-diphos 99.2 3.7E-10 8E-15 113.7 15.7 180 20-264 2-184 (358)
25 cd04197 eIF-2B_epsilon_N The N 99.2 4.3E-10 9.4E-15 105.0 15.0 160 22-233 3-178 (217)
26 cd06428 M1P_guanylylT_A_like_N 99.2 7.4E-10 1.6E-14 106.0 16.5 184 22-267 1-191 (257)
27 cd02538 G1P_TT_short G1P_TT_sh 99.2 5.8E-10 1.3E-14 105.5 15.5 179 21-265 2-183 (240)
28 cd04189 G1P_TT_long G1P_TT_lon 99.2 1.5E-09 3.3E-14 102.0 16.7 178 20-266 1-181 (236)
29 cd06425 M1P_guanylylT_B_like_N 99.2 9.2E-10 2E-14 103.6 15.2 180 22-266 3-186 (233)
30 PRK14360 glmU bifunctional N-a 99.2 1.8E-09 3.9E-14 111.4 18.7 248 20-355 2-250 (450)
31 PRK10122 GalU regulator GalF; 99.2 1.5E-09 3.3E-14 106.6 17.2 187 19-266 3-225 (297)
32 PRK14358 glmU bifunctional N-a 99.1 5.3E-09 1.2E-13 109.2 21.8 177 19-261 7-184 (481)
33 cd06422 NTP_transferase_like_1 99.1 1.9E-09 4.1E-14 100.5 15.8 174 22-266 2-180 (221)
34 TIGR02623 G1P_cyt_trans glucos 99.1 1.7E-09 3.7E-14 103.7 15.7 191 22-264 2-196 (254)
35 PRK14352 glmU bifunctional N-a 99.1 3.1E-09 6.6E-14 111.0 17.3 187 19-268 4-191 (482)
36 KOG1322 GDP-mannose pyrophosph 99.1 4.6E-09 9.9E-14 102.1 16.4 187 18-267 8-198 (371)
37 PRK00725 glgC glucose-1-phosph 99.1 4.3E-09 9.3E-14 108.3 17.4 200 19-268 15-224 (425)
38 cd06426 NTP_transferase_like_2 99.1 4.2E-09 9E-14 97.8 15.7 172 22-265 1-175 (220)
39 cd06915 NTP_transferase_WcbM_l 99.1 4.3E-09 9.4E-14 97.3 15.8 177 22-266 1-180 (223)
40 PLN02917 CMP-KDO synthetase 99.1 4.1E-09 9E-14 103.3 16.2 223 18-326 46-277 (293)
41 cd02540 GT2_GlmU_N_bac N-termi 99.1 9.6E-09 2.1E-13 95.9 17.9 181 22-268 1-182 (229)
42 PLN02241 glucose-1-phosphate a 99.1 2.6E-09 5.6E-14 110.3 15.2 214 18-268 2-231 (436)
43 PRK02862 glgC glucose-1-phosph 99.0 7.2E-09 1.6E-13 106.8 17.7 204 19-268 3-225 (429)
44 cd04181 NTP_transferase NTP_tr 99.0 6.4E-09 1.4E-13 95.9 15.4 175 22-264 1-178 (217)
45 PRK14355 glmU bifunctional N-a 99.0 4.1E-08 8.8E-13 101.8 22.4 185 19-268 3-188 (459)
46 cd02509 GDP-M1P_Guanylyltransf 99.0 1.5E-08 3.3E-13 98.3 16.2 195 21-269 2-208 (274)
47 TIGR01208 rmlA_long glucose-1- 99.0 1.8E-08 3.9E-13 100.9 17.1 178 22-266 2-182 (353)
48 KOG1460 GDP-mannose pyrophosph 99.0 6.1E-09 1.3E-13 99.9 12.7 244 19-326 2-253 (407)
49 TIGR01099 galU UTP-glucose-1-p 99.0 8.8E-09 1.9E-13 98.5 13.7 188 21-267 2-214 (260)
50 PRK14354 glmU bifunctional N-a 98.9 2.5E-07 5.3E-12 95.7 23.2 183 19-268 2-185 (458)
51 COG1209 RfbA dTDP-glucose pyro 98.9 4.3E-08 9.3E-13 93.5 15.9 176 22-264 3-181 (286)
52 cd02508 ADP_Glucose_PP ADP-glu 98.9 2.2E-08 4.8E-13 92.2 13.4 137 22-199 1-143 (200)
53 PRK13389 UTP--glucose-1-phosph 98.9 3.6E-08 7.7E-13 97.2 15.3 201 20-264 9-226 (302)
54 cd02524 G1P_cytidylyltransfera 98.9 5.3E-08 1.1E-12 93.0 15.9 190 22-265 1-198 (253)
55 cd02523 PC_cytidylyltransferas 98.9 3.4E-08 7.3E-13 92.6 13.9 175 22-268 1-178 (229)
56 PRK14353 glmU bifunctional N-a 98.9 5.1E-08 1.1E-12 100.5 16.4 185 18-268 4-189 (446)
57 PRK05450 3-deoxy-manno-octulos 98.9 4.5E-08 9.8E-13 92.7 14.4 187 19-268 2-194 (245)
58 cd02517 CMP-KDO-Synthetase CMP 98.9 1E-07 2.2E-12 89.8 16.1 185 19-268 1-191 (239)
59 TIGR01173 glmU UDP-N-acetylglu 98.9 5.2E-07 1.1E-11 92.9 22.7 179 21-268 2-181 (451)
60 TIGR02091 glgC glucose-1-phosp 98.8 7.6E-08 1.6E-12 96.5 14.4 198 22-268 1-206 (361)
61 cd02541 UGPase_prokaryotic Pro 98.8 5.8E-08 1.3E-12 93.2 13.0 184 21-266 2-213 (267)
62 PRK09451 glmU bifunctional N-a 98.8 1.1E-07 2.4E-12 98.5 15.8 181 19-269 5-186 (456)
63 TIGR01479 GMP_PMI mannose-1-ph 98.7 4.3E-07 9.2E-12 94.7 15.8 195 22-269 3-210 (468)
64 cd04198 eIF-2B_gamma_N The N-t 98.6 1.1E-06 2.5E-11 81.8 14.5 133 22-205 3-139 (214)
65 cd04183 GT2_BcE_like GT2_BcbE_ 98.5 2.4E-06 5.2E-11 80.0 14.5 175 22-267 1-181 (231)
66 cd02507 eIF-2B_gamma_N_like Th 98.5 2E-06 4.4E-11 80.3 13.6 164 22-234 3-180 (216)
67 PRK13368 3-deoxy-manno-octulos 98.4 1.1E-05 2.3E-10 76.1 15.8 178 19-266 2-187 (238)
68 PF12804 NTP_transf_3: MobA-li 98.3 5E-06 1.1E-10 73.3 9.9 36 22-62 1-36 (160)
69 cd02513 CMP-NeuAc_Synthase CMP 98.3 2.1E-05 4.6E-10 72.9 14.5 186 19-266 1-189 (223)
70 PRK13385 2-C-methyl-D-erythrit 98.2 1.4E-05 3E-10 75.3 11.1 66 19-102 2-67 (230)
71 COG1213 Predicted sugar nucleo 98.2 1.4E-05 3.1E-10 75.0 10.6 118 20-194 4-121 (239)
72 TIGR00454 conserved hypothetic 98.1 1.3E-05 2.7E-10 73.4 9.3 61 21-102 2-62 (183)
73 COG0448 GlgC ADP-glucose pyrop 98.1 3E-05 6.6E-10 77.9 12.4 200 18-270 4-211 (393)
74 cd04182 GT_2_like_f GT_2_like_ 98.1 8.8E-06 1.9E-10 73.0 7.9 38 20-62 1-38 (186)
75 TIGR00466 kdsB 3-deoxy-D-manno 98.0 0.00013 2.8E-09 69.4 13.9 181 22-268 2-194 (238)
76 TIGR03310 matur_ygfJ molybdenu 97.9 4.6E-05 1E-09 68.7 8.9 36 22-62 2-37 (188)
77 cd02516 CDP-ME_synthetase CDP- 97.9 5.8E-05 1.3E-09 69.9 8.9 39 20-61 1-39 (218)
78 COG0746 MobA Molybdopterin-gua 97.8 0.0001 2.2E-09 68.1 9.2 37 19-61 4-40 (192)
79 TIGR03202 pucB xanthine dehydr 97.8 0.00012 2.6E-09 66.6 9.1 36 21-61 2-37 (190)
80 PF01128 IspD: 2-C-methyl-D-er 97.8 5.4E-05 1.2E-09 71.4 6.7 65 20-102 1-65 (221)
81 TIGR00453 ispD 2-C-methyl-D-er 97.7 0.00011 2.4E-09 68.2 8.5 38 21-61 1-38 (217)
82 PRK09382 ispDF bifunctional 2- 97.7 0.00068 1.5E-08 69.0 13.6 40 19-61 5-44 (378)
83 PRK00155 ispD 2-C-methyl-D-ery 97.7 0.00029 6.3E-09 66.0 10.2 40 19-61 3-42 (227)
84 cd02503 MobA MobA catalyzes th 97.7 0.00015 3.3E-09 65.2 7.8 37 21-62 2-38 (181)
85 PLN02728 2-C-methyl-D-erythrit 97.6 0.00012 2.6E-09 70.4 6.8 42 18-62 23-64 (252)
86 PRK02726 molybdopterin-guanine 97.6 0.00031 6.8E-09 64.9 9.2 38 19-61 7-44 (200)
87 PRK14489 putative bifunctional 97.6 0.00031 6.8E-09 71.1 9.7 39 19-61 5-43 (366)
88 COG2266 GTP:adenosylcobinamide 97.6 0.00014 3.1E-09 65.4 6.2 60 21-102 2-61 (177)
89 cd02518 GT2_SpsF SpsF is a gly 97.4 0.0015 3.2E-08 61.5 11.3 34 22-61 2-35 (233)
90 PRK15460 cpsB mannose-1-phosph 97.4 0.0043 9.4E-08 65.0 14.8 193 17-269 3-219 (478)
91 PRK00560 molybdopterin-guanine 97.3 0.00026 5.7E-09 65.2 4.4 40 17-61 6-46 (196)
92 TIGR02665 molyb_mobA molybdopt 97.1 0.00035 7.6E-09 63.1 3.6 38 20-61 1-38 (186)
93 COG0836 {ManC} Mannose-1-phosp 97.1 0.01 2.2E-07 58.5 13.7 193 20-268 2-211 (333)
94 PRK00317 mobA molybdopterin-gu 97.1 0.0005 1.1E-08 62.7 4.0 39 19-61 3-41 (193)
95 COG1211 IspD 4-diphosphocytidy 97.1 0.0011 2.3E-08 62.9 6.2 66 18-101 3-68 (230)
96 COG1210 GalU UDP-glucose pyrop 97.0 0.013 2.7E-07 56.7 12.9 182 22-265 7-217 (291)
97 PRK14490 putative bifunctional 96.9 0.0017 3.6E-08 65.9 6.1 39 18-61 173-211 (369)
98 PRK14500 putative bifunctional 96.9 0.0011 2.3E-08 66.8 4.5 40 17-61 158-197 (346)
99 COG4750 LicC CTP:phosphocholin 96.5 0.0044 9.5E-08 56.8 5.1 60 22-102 3-65 (231)
100 TIGR03584 PseF pseudaminic aci 95.9 0.12 2.6E-06 48.7 11.8 181 22-265 2-185 (222)
101 COG2068 Uncharacterized MobA-r 95.3 0.1 2.2E-06 48.4 8.7 118 17-189 3-120 (199)
102 PF14134 DUF4301: Domain of un 91.3 1.4 3E-05 46.1 9.8 119 36-179 165-296 (513)
103 COG1212 KdsB CMP-2-keto-3-deox 87.0 2.3 5E-05 40.3 7.1 90 19-125 3-106 (247)
104 KOG1462 Translation initiation 81.5 1.4 3E-05 44.7 3.3 72 19-111 9-83 (433)
105 PF02348 CTP_transf_3: Cytidyl 71.7 15 0.00032 33.5 7.2 36 21-62 1-36 (217)
106 COG1861 SpsF Spore coat polysa 69.2 16 0.00034 34.7 6.6 119 18-198 2-125 (241)
107 COG1535 EntB Isochorismate hyd 48.0 1.2E+02 0.0026 28.0 8.2 94 49-174 49-151 (218)
108 PF13106 DUF3961: Domain of un 37.3 19 0.00042 24.6 1.1 14 103-116 4-20 (40)
109 PF10662 PduV-EutP: Ethanolami 36.2 23 0.0005 31.2 1.8 30 343-384 109-138 (143)
110 COG0641 AslB Arylsulfatase reg 36.0 82 0.0018 32.2 6.0 119 35-179 121-241 (378)
111 KOG0734 AAA+-type ATPase conta 27.6 53 0.0011 35.3 3.0 55 30-103 329-392 (752)
112 PF09147 DUF1933: Domain of un 20.7 14 0.0003 33.7 -2.3 25 302-326 150-175 (201)
113 TIGR02180 GRX_euk Glutaredoxin 20.5 3.3E+02 0.0072 20.1 5.8 56 82-161 28-83 (84)
No 1
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=4.8e-113 Score=873.25 Aligned_cols=395 Identities=90% Similarity=1.458 Sum_probs=370.1
Q ss_pred hHHHHHHHHhHhhccCCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 016006 2 DERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAA 81 (397)
Q Consensus 2 ~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 81 (397)
++.++|+++|+++|++||||||+||||||||||+++||||+||++|++|||||++++||+++|+++.+..+. .+.++++
T Consensus 99 ~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~-~~~~~~~ 177 (493)
T PLN02435 99 EDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSE-GPGRPVT 177 (493)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhccc-ccCCCCc
Confidence 456789999999999999999999999999999999999999999999999999999999999998765421 0125788
Q ss_pred eeEEEecCccchHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHH
Q 016006 82 IHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDM 161 (397)
Q Consensus 82 ipl~IMtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l 161 (397)
||||||||+.||+.|++||++|+|||++++||+||+|+++||++.+|+++|+++++++|+|+||||+|.+|+++|+|++|
T Consensus 178 IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l 257 (493)
T PLN02435 178 IHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDM 257 (493)
T ss_pred eeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCceEEEEEcCCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccC
Q 016006 162 ATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQ 241 (397)
Q Consensus 162 ~~~G~eyv~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~ 241 (397)
+++|++|+||+|+||+|++++||.|+||++.+++++++||++|++|+|+||++|+.+.+|+++||||+|+++++++.+++
T Consensus 258 ~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~ 337 (493)
T PLN02435 258 ASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQ 337 (493)
T ss_pred HhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999996558999999999999999888776
Q ss_pred CCCceeeeccceeeeEeehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccCCceeEEEEecCcccc
Q 016006 242 ETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFA 321 (397)
Q Consensus 242 ~~g~~~f~~~Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~~~~~~~~v~R~~~Fs 321 (397)
++|++.|++||||+|+||++||+++++..+..+|||+|+|||||+++.+||+|||+||||+|++++++.+++|+|++|||
T Consensus 338 ~~g~L~~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~~ngiK~E~FiFDvf~~a~~~~~~eV~R~~EFa 417 (493)
T PLN02435 338 QTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPSTALFEVLREEEFA 417 (493)
T ss_pred cccccccchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCCCcceEEeeeeeecchhhcCceEEEEEchhhccC
Confidence 67999999999999999999999998766667999999999999999899999999999999999999999999999999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCceeecCCCCCCCcEEeCcccceeCCcchhhhcCcEecCCccccC
Q 016006 322 PVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF 397 (397)
Q Consensus 322 PvKn~~~~~~dsp~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~eisp~~sy~gE~l~~~~~~~~~~~p~~~~~ 397 (397)
||||++|.+.|||+|||++|+++|++||+++|+.+.++.+.....|||||++||+||||+.+++|++|+.|.+++|
T Consensus 418 PlKN~~g~~~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~~sY~gE~L~~~~~~~~~~~~~~~~~ 493 (493)
T PLN02435 418 PVKNANGSNFDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEISF 493 (493)
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEEeCCceeeCCCCchhhcCCCeecCceeecC
Confidence 9999999888999999999999999999999998754332223469999999999999999999999999999876
No 2
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=9.6e-103 Score=799.59 Aligned_cols=384 Identities=40% Similarity=0.666 Sum_probs=352.5
Q ss_pred hHHHHHHHHhHhhccCCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 016006 2 DERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAA 81 (397)
Q Consensus 2 ~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 81 (397)
++..+|+++|+++|++||||+|+||||+|||||++.||+|+||+++++|||||+++++|++++.++.++++. .+++.
T Consensus 89 ~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~---~~~~~ 165 (482)
T PTZ00339 89 KERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGG---GDDPT 165 (482)
T ss_pred HHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhccccc---ccCCC
Confidence 567899999999999999999999999999999999999999999999999999999999999988654321 14577
Q ss_pred eeEEEecCccchHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeec-CCcccccCCCccccccCCCchHhHHHhhCchHHH
Q 016006 82 IHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK-DGRFIMETPYKVAKAPDGNGGVYSALKSSKLLED 160 (397)
Q Consensus 82 ipl~IMtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~-~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~ 160 (397)
|||+||||++|++.|++||++|+|||+++++|+||+|+++||++. +|+++++++++++|+|+||||+|.+|+++|+|++
T Consensus 166 Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~ 245 (482)
T PTZ00339 166 IYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMD 245 (482)
T ss_pred CCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHH
Confidence 999999999999999999999999999999999999999999985 6999999999999999999999999999999999
Q ss_pred HHHCCceEEEEEcCCCccccccccccchhhhccCC-cEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhc
Q 016006 161 MATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGV-SAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAI 239 (397)
Q Consensus 161 l~~~G~eyv~v~~vDN~l~~~~Dp~~lg~~~~~~~-~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~ 239 (397)
|.++|++|+||+||||+|++++||.|+||++++++ +++.+|+ |+.|+|+||++|+. +|+++||||+|++++.++..
T Consensus 246 l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~--~g~~~vvEYsEi~~~~~~~~ 322 (482)
T PTZ00339 246 IVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLK--DYEWQVVEYTEINERILNND 322 (482)
T ss_pred HHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEe--CCcccEEEEeccChhhhhcc
Confidence 99999999999999999999999999999999999 9989888 77899999999997 78999999999999988776
Q ss_pred cCCCCceeeeccceeeeEeehHHHHHHhh-ccccCccceeeccccCCCC---CCcchhhhhHHHhhhcccCCceeEEEEe
Q 016006 240 NQETGRLRFCWSNVCLHMFTLDFLNQVAN-GLEKDSVYHLAEKKIPSIH---GQTVGFKLEQFIFDAFPYAPSTALFEVL 315 (397)
Q Consensus 240 ~~~~g~~~f~~~Ni~~~~~~l~~L~~~~~-~~~~~lp~h~a~kkip~~~---~~~~~~klE~fi~D~~~~~~~~~~~~v~ 315 (397)
+..+|.++|++||||+|||+++||+++++ ....++|||+|+|||||++ ..+||+|||+||||+|++++++.+++|+
T Consensus 323 ~~~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~~~png~K~E~FiFDvf~~~~~~~~~ev~ 402 (482)
T PTZ00339 323 ELLTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPTDKTMGIKLEAFIFDIFRYAKNVLILEVD 402 (482)
T ss_pred cccCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCCCCcceeeehhhhhhHHHhccccceeeec
Confidence 65569999999999999999999999875 4445799999999999998 3479999999999999999999999999
Q ss_pred cCccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCceeecCCCCCCCcEEeCcccceeCCcchhhhcCcEecCC
Q 016006 316 REEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAP 392 (397)
Q Consensus 316 R~~~FsPvKn~~~~~~dsp~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~eisp~~sy~gE~l~~~~~~~~~~~p 392 (397)
|++|||||||++|.+.|||+|||++|+++|++||+++|+++.+........|||||++||+||||+.+ +|++|..+
T Consensus 403 R~~eFsPlKNa~g~~~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~~sy~ge~l~~~-~~~~~~~~ 478 (482)
T PTZ00339 403 REDEFAPIKNADGAAADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEISPLVSYGGEGLFQY-PGKKILGL 478 (482)
T ss_pred hhhccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEecCcceeCCCCcccc-cCceecCC
Confidence 99999999999999999999999999999999999999977532111123699999999999999976 88888753
No 3
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.6e-94 Score=719.58 Aligned_cols=383 Identities=56% Similarity=0.924 Sum_probs=363.2
Q ss_pred hHHHHHHHHhHhhccCCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 016006 2 DERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAA 81 (397)
Q Consensus 2 ~~~~~~~~~G~~~i~~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 81 (397)
+++++||..|+++|++|++|+++||||||||||++.|||++|+|+++++|+||+++++|+++|.+|..... +++.
T Consensus 80 ~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~-----~~~~ 154 (477)
T KOG2388|consen 80 DDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVS-----DGVD 154 (477)
T ss_pred hhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhc-----cCCc
Confidence 56677999999999999999999999999999999999999999999999999999999999999877653 4688
Q ss_pred eeEEEecCccchHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHH
Q 016006 82 IHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDM 161 (397)
Q Consensus 82 ipl~IMtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l 161 (397)
||||||||+.|++.|++||+.|+|||++++||++|+|+++||++.+|+++|+.+.+++++|+||||+|.++.++ +++|
T Consensus 155 I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm 232 (477)
T KOG2388|consen 155 IPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDM 232 (477)
T ss_pred eEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhh--hhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHCCceEEEEEcCCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccC
Q 016006 162 ATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQ 241 (397)
Q Consensus 162 ~~~G~eyv~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~ 241 (397)
.++|++|+||+||||+|++++||.|+||++.++++++.|+|+|..|.|.||++|..++ |+++||||+|++++++....+
T Consensus 233 ~~rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~-G~~~vvEYsEi~~~~a~~~~~ 311 (477)
T KOG2388|consen 233 AARGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQ-GTPLVVEYSELDAELAKAKAP 311 (477)
T ss_pred HhhcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEecCC-CceeEEEecccCHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999843 899999999999999987776
Q ss_pred CCCceeeeccceeeeEeehHHHHHHhhccccCccceeeccccCCCCC--------CcchhhhhHHHhhhcccCCceeEEE
Q 016006 242 ETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHG--------QTVGFKLEQFIFDAFPYAPSTALFE 313 (397)
Q Consensus 242 ~~g~~~f~~~Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~--------~~~~~klE~fi~D~~~~~~~~~~~~ 313 (397)
++|++.|++||||+|+|+++||+++.......+|+|+|.|||||++. .+||+|+|+||||+|+++.++.+++
T Consensus 312 d~g~l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E~fifdvf~~~k~f~~me 391 (477)
T KOG2388|consen 312 DGGRLLFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLEQFIFDVFPSAKKFGLME 391 (477)
T ss_pred ccCccccCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEEeeeeeecccccceeEEe
Confidence 66999999999999999999999999887778999999999999873 3799999999999999999999999
Q ss_pred EecCccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCceeecCCCCCCCcEEeCcccceeCCcchhhhcCcEecCCc
Q 016006 314 VLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPC 393 (397)
Q Consensus 314 v~R~~~FsPvKn~~~~~~dsp~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~eisp~~sy~gE~l~~~~~~~~~~~p~ 393 (397)
|+|++||||+||+.+...|||+|||.+++++|++|+..+|+++.+. +..|||||+|||+||+|++++.|++|+.|.
T Consensus 392 V~Re~efSPlKng~~~~~D~p~T~~~~~l~~h~~wi~~~g~~f~~~----~~~~evs~~vsy~GE~lEs~~~g~~F~s~~ 467 (477)
T KOG2388|consen 392 VPREEEFSPLKNGGKSSTDNPSTARIALLRLHIRWIEKAGGIFSDA----EAVVEVSPLVSYAGENLESVPSGFEFNSPL 467 (477)
T ss_pred cchhhhcCccccCCCCCCCChhHHHHHHHHhhhhehhccCcEEecC----cceEEecceeeecccchhhccccceecCce
Confidence 9999999999999999999999999999999999999999998643 246999999999999999999999999999
Q ss_pred ccc
Q 016006 394 EIG 396 (397)
Q Consensus 394 ~~~ 396 (397)
++.
T Consensus 468 ~~~ 470 (477)
T KOG2388|consen 468 YLD 470 (477)
T ss_pred eEe
Confidence 863
No 4
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1.4e-87 Score=662.01 Aligned_cols=315 Identities=55% Similarity=0.918 Sum_probs=299.0
Q ss_pred HHHHHHhHhhccCCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeE
Q 016006 5 ERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHW 84 (397)
Q Consensus 5 ~~~~~~G~~~i~~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl 84 (397)
++|+++|+++|++|++|+|+||||+|||||++.||+|+||++++++|+||+++++|++++.++.+.. + ..+.|||
T Consensus 1 ~~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~---~--~~~~ip~ 75 (323)
T cd04193 1 KEWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEAS---G--KKVPIPW 75 (323)
T ss_pred ChHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhcc---C--CCCCceE
Confidence 3799999999999999999999999999999999999999999999999999999999998876543 2 4678999
Q ss_pred EEecCccchHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHC
Q 016006 85 YIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR 164 (397)
Q Consensus 85 ~IMtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~ 164 (397)
+||||++||+.|++||++++|||+++++|++|.|+++||++.+|+++++++++++|+|+||||+|.+|++||+|++|+++
T Consensus 76 ~imtS~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~ 155 (323)
T cd04193 76 YIMTSEATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKR 155 (323)
T ss_pred EEEcChhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCC
Q 016006 165 GIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETG 244 (397)
Q Consensus 165 G~eyv~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g 244 (397)
|+||++|+|+||+|++++||.|+||++++++++++||++|+.|+|++|++|+. +|+++|+||+|+|++.++.++ ++|
T Consensus 156 G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~--~g~~~vvEysel~~~~~~~~~-~~g 232 (323)
T cd04193 156 GIKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV--DGKPQVVEYSEISDELAEKRD-ADG 232 (323)
T ss_pred CCEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE--CCeEEEEEeecCCHHHHhccC-cCC
Confidence 99999999999999999999999999999999999999999999999999998 799999999999999988764 579
Q ss_pred ceeeeccceeeeEeehHHHHHHhhccccCccceeeccccCCCC--------CCcchhhhhHHHhhhcccCCceeEEEEec
Q 016006 245 RLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIH--------GQTVGFKLEQFIFDAFPYAPSTALFEVLR 316 (397)
Q Consensus 245 ~~~f~~~Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~--------~~~~~~klE~fi~D~~~~~~~~~~~~v~R 316 (397)
++.|++||||+|+|+++||+++++.....+|||+|.|||||.+ ..+|++|||+||||+|++++++.+++|+|
T Consensus 233 ~l~f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~~~~~~~eV~R 312 (323)
T cd04193 233 ELQYNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFAKNFVCLEVDR 312 (323)
T ss_pred cEecccchHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhCCceEEEEECh
Confidence 9999999999999999999999876444699999999999987 56899999999999999999999999999
Q ss_pred CccccccccCC
Q 016006 317 EEEFAPVKNAN 327 (397)
Q Consensus 317 ~~~FsPvKn~~ 327 (397)
++||+||||++
T Consensus 313 ~~~F~PvKn~~ 323 (323)
T cd04193 313 EEEFSPLKNAD 323 (323)
T ss_pred hhccccCcCCC
Confidence 99999999984
No 5
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=1.6e-81 Score=609.87 Aligned_cols=285 Identities=22% Similarity=0.303 Sum_probs=265.8
Q ss_pred CCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 18 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 18 gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
+|||||+||||||||||+++|||++|| ++++||||++++||+++++. +++.|||+||||+.||++|+
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~~~-----------~~~~iPl~iMtS~~T~~~T~ 68 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLNKT-----------YGVDVPLVLMNSFNTDEDTK 68 (300)
T ss_pred CcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCcchHHHH
Confidence 499999999999999999999999887 69999999999999998875 46889999999999999999
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCeeeeecCCccccc---CCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcC
Q 016006 98 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIME---TPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 174 (397)
Q Consensus 98 ~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~---~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~v 174 (397)
+||++|++ ++++|.+|+|+++||++.+|+++++ ++++++|+|+||||+|.+|++||+|++|+++|+||++|+|+
T Consensus 69 ~~l~~~~~---~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nv 145 (300)
T cd00897 69 KILKKYAG---VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNI 145 (300)
T ss_pred HHHHHcCC---CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEec
Confidence 99999775 6789999999999999999999997 78899999999999999999999999999999999999999
Q ss_pred CCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeecccee
Q 016006 175 DNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 254 (397)
Q Consensus 175 DN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~ 254 (397)
|| |++++||.|+|||+.+++++++||++|+.|+|+||++|+. +|+++||||+|+|++.+++++ +...|.++|||
T Consensus 146 DN-L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~--~g~~~vvEyse~p~e~~~~~~---~~~~~~~~nt~ 219 (300)
T cd00897 146 DN-LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFK---SIKKFKIFNTN 219 (300)
T ss_pred cc-ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE--CCEEEEEEeccCCHHHHHhhc---CcccceEEEEe
Confidence 99 5899999999999999999999999999999999999998 799999999999999887764 45667778999
Q ss_pred eeEeehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccCCceeEEEEecCccccccccCCC
Q 016006 255 LHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG 328 (397)
Q Consensus 255 ~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~~~~~~~~v~R~~~FsPvKn~~~ 328 (397)
||||+++||+++++.....+|+|++.|+||. .+|++|||+||||+|++++++.+++|+|+ ||+||||+++
T Consensus 220 n~~~~l~~L~~~~~~~~~~lp~h~~~K~v~p---~~~~~qlE~~i~da~~~~~~~~~~eV~R~-rF~PvKn~~d 289 (300)
T cd00897 220 NLWVNLKAVKRVVEENALDLEIIVNPKTVDG---GLNVIQLETAVGAAIKNFDNALGVNVPRS-RFLPVKTTSD 289 (300)
T ss_pred EEEEEHHHHHHHHHhccCCCCeeecccccCC---CCCEEEeHhHhhhHHHhCCCcEEEEEChh-hcCCCCChHH
Confidence 9999999999998755456999999999863 28999999999999999999999999999 7999999975
No 6
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=5e-80 Score=601.38 Aligned_cols=295 Identities=27% Similarity=0.334 Sum_probs=264.9
Q ss_pred EEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHH
Q 016006 20 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 99 (397)
Q Consensus 20 vavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~ 99 (397)
+|+|+||||||||||+++|||++||++++++||||++++||+++|+++.+ + +++.|||+||||+.||++|++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~-----~--~~~~IPl~IMTS~~Th~~T~~~ 73 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK-----G--EKMEIPFVIMTSDDTHSKTLKL 73 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc-----c--CCCceeEEEECCCchhHHHHHH
Confidence 58999999999999999999999999999999999999999999998754 1 5788999999999999999999
Q ss_pred HhhcCCCCCCCCcEEEEEcCCeeeee-cCCcc--cccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCC
Q 016006 100 FEGHKYFGLESDQVTFFQQGTIPCVS-KDGRF--IMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 176 (397)
Q Consensus 100 ~~~~~~fgl~~~~v~~f~Q~~~P~~~-~~g~~--~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN 176 (397)
|++|+|||++++||+||+|+++||++ .+|++ .++++++++|+|+||||+|.+|+++|+||+|+++|+||++|+||||
T Consensus 74 fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN 153 (315)
T cd06424 74 LEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTN 153 (315)
T ss_pred HHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecch
Confidence 99999999999999999999999997 89998 5788999999999999999999999999999999999999999999
Q ss_pred ccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEe-CCCCceEE--EEeccCChhhhhhccC------CCCcee
Q 016006 177 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR-GKGGPLTV--VEYSELDPSLASAINQ------ETGRLR 247 (397)
Q Consensus 177 ~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~-~~~g~~~v--vEy~el~~~~~~~~~~------~~g~~~ 247 (397)
+|++++||.|+|+++.++++++.+|++| .|.|+||++|+. +.+|+++| |||+|+++++++.... .+|.+.
T Consensus 154 ~L~~~adP~fiG~~~~~~~d~~~k~v~~-~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~ 232 (315)
T cd06424 154 ALAFKAIPAVLGVSATKSLDMNSLTVPR-KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSP 232 (315)
T ss_pred hhhhccChhhEEEEecCCCceEeEEEeC-CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccccccccc
Confidence 9999999999999999999999999985 689999999984 24689988 9999999998774322 122334
Q ss_pred eeccceeeeEeehHHHHHHhhccccCccceeeccccCCCCCC----cchhhhhHHHhhhccc---CCceeEEEEecCccc
Q 016006 248 FCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQ----TVGFKLEQFIFDAFPY---APSTALFEVLREEEF 320 (397)
Q Consensus 248 f~~~Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~----~~~~klE~fi~D~~~~---~~~~~~~~v~R~~~F 320 (397)
++||||+|+|++++|.+.++. ..++|..++++||.|+. ..+.|||+||||++++ +.++.+++|+|++||
T Consensus 233 -f~gNi~~~~f~l~~~~~~l~~---~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~f 308 (315)
T cd06424 233 -FPGNINQLVFSLGPYMDELEK---TKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCF 308 (315)
T ss_pred -CCCeeeeEEEeHHHHHHHHhh---ccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcc
Confidence 479999999999999998863 35666666688888753 3568999999999554 789999999999999
Q ss_pred cccccC
Q 016006 321 APVKNA 326 (397)
Q Consensus 321 sPvKn~ 326 (397)
|||||.
T Consensus 309 sP~KN~ 314 (315)
T cd06424 309 SPVKNN 314 (315)
T ss_pred cccCCC
Confidence 999996
No 7
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=1.1e-78 Score=617.28 Aligned_cols=334 Identities=21% Similarity=0.261 Sum_probs=299.6
Q ss_pred HhhccCCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCcc
Q 016006 12 LKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF 91 (397)
Q Consensus 12 ~~~i~~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~ 91 (397)
.++|. |+|||+||||||||||+++|||+++ +++++||||++++||+++++. +++.|||+||||+.
T Consensus 74 ~~~L~--k~avlkLnGGlGTrmG~~~PKs~i~--v~~~~sfldl~~~qi~~l~~~-----------~g~~vPl~iMtS~~ 138 (469)
T PLN02474 74 KKLLD--KLVVLKLNGGLGTTMGCTGPKSVIE--VRNGLTFLDLIVIQIENLNKK-----------YGCNVPLLLMNSFN 138 (469)
T ss_pred HHHHh--cEEEEEecCCcccccCCCCCceeEE--cCCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCc
Confidence 45674 9999999999999999999999987 589999999999999988764 56889999999999
Q ss_pred chHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCC---ccccccCCCchHhHHHhhCchHHHHHHCCceE
Q 016006 92 TDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPY---KVAKAPDGNGGVYSALKSSKLLEDMATRGIKY 168 (397)
Q Consensus 92 t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~---~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~ey 168 (397)
||++|++||++|++|+ .+|++|+|+++||++.+|+++++.++ +.+|+|+||||+|.+|++||+|++|+++|+||
T Consensus 139 T~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~ey 215 (469)
T PLN02474 139 THDDTQKIVEKYTNSN---IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEY 215 (469)
T ss_pred hhHHHHHHHHHcCCCc---cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEE
Confidence 9999999999999874 57999999999999999999998765 45699999999999999999999999999999
Q ss_pred EEEEcCCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceee
Q 016006 169 IDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRF 248 (397)
Q Consensus 169 v~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f 248 (397)
+||+|+|| |++++||.|+||++.+++++++||++|+.|+++||++|+. +|+++++||+|+|++.+++++ |.++|
T Consensus 216 ifv~nvDN-Lga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~--dgk~~lvEysqvp~e~~~~f~---~~~kf 289 (469)
T PLN02474 216 VFIANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFK---SIEKF 289 (469)
T ss_pred EEEEecCc-cccccCHHHHHHHHhcCCceEEEEeecCCCCCCccEEEEE--CCEEEEEEEecCCHHHHHhhc---ccccc
Confidence 99999999 5999999999999999999999999999999999999987 799999999999999987753 67888
Q ss_pred eccceeeeEeehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccCCceeEEEEecCccccccccCCC
Q 016006 249 CWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG 328 (397)
Q Consensus 249 ~~~Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~~~~~~~~v~R~~~FsPvKn~~~ 328 (397)
.++|||||||+++||+++++. ..+|+|+..+ -+..++ .+.+|||++|||+|++++++.+++|+|+ ||+||||++
T Consensus 290 ~~fNtnn~w~~L~~l~~~~~~--~~l~~~~I~n-~k~~~g-~kv~q~Et~ig~ai~~f~~~~~v~VpR~-rF~PVK~~~- 363 (469)
T PLN02474 290 KIFNTNNLWVNLKAIKRLVEA--DALKMEIIPN-PKEVDG-VKVLQLETAAGAAIRFFDNAIGINVPRS-RFLPVKATS- 363 (469)
T ss_pred eeeeeeeEEEEHHHHHHHhhc--CCCCceeecC-CCCCCC-eeEEEeHHHHHHHHHhCCCceEEEEchh-hccCCCCCC-
Confidence 889999999999999999863 4588886421 122354 4458999999999999999999999999 699999995
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCceeecCCCCCCCcEEeCcccceeCCcchhh
Q 016006 329 SNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAI 383 (397)
Q Consensus 329 ~~~dsp~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~eisp~~sy~gE~l~~~ 383 (397)
+|.++|.|++.++++|+..+|+...+..| .||++|.+++-+|.++.+
T Consensus 364 ----dll~~rsdly~l~~~~l~~~~~~~~~~~p----~IeL~~~f~~v~~f~~rf 410 (469)
T PLN02474 364 ----DLLLVQSDLYTLVDGFVIRNKARTNPSNP----SIELGPEFKKVANFLSRF 410 (469)
T ss_pred ----CHHHHHHHHHHhccCeEEecCcccCCCCC----cEEECcccccHHhHHHhc
Confidence 69999999999999999999986443333 489999999999988765
No 8
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=3.1e-79 Score=619.37 Aligned_cols=297 Identities=41% Similarity=0.613 Sum_probs=260.0
Q ss_pred HHhHhhccCCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEec
Q 016006 9 KMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 88 (397)
Q Consensus 9 ~~G~~~i~~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMt 88 (397)
+.|+++++.||+|||+||||||||||+++|||++|| .+++||||++++||+++++. +++.|||+|||
T Consensus 46 ~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~v--~~~~t~ldl~~~qi~~l~~~-----------~~~~iPl~iMt 112 (420)
T PF01704_consen 46 DEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIPV--REGKTFLDLIVEQIEALNKK-----------YGVDIPLYIMT 112 (420)
T ss_dssp HHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSEE--ETTEEHHHHHHHHHHHHHHH-----------HTTT-EEEEEE
T ss_pred ccchhHHhhCCEEEEEEcCcccCccCCCCCCcceec--CCcccHHHHHHHHHHHHhcc-----------ccccceEEEec
Confidence 789999999999999999999999999999999887 78999999999999988764 46789999999
Q ss_pred CccchHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCc-----cccccCCCchHhHHHhhCchHHHHHH
Q 016006 89 SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYK-----VAKAPDGNGGVYSALKSSKLLEDMAT 163 (397)
Q Consensus 89 S~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~-----i~~~P~G~Ggi~~~L~~sg~l~~l~~ 163 (397)
|+.||++|++||++ |||++.+ |++|+|+++||++.+|+++++++.+ ..|+|+||||+|.+|++||+||+|++
T Consensus 113 S~~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~ 189 (420)
T PF01704_consen 113 SFNTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLA 189 (420)
T ss_dssp ETTTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHH
T ss_pred CcccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHH
Confidence 99999999999999 9999877 9999999999999999999987652 35899999999999999999999999
Q ss_pred CCceEEEEEcCCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCC
Q 016006 164 RGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQET 243 (397)
Q Consensus 164 ~G~eyv~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~ 243 (397)
+|+||+||+|+|| |++++||.|+||++++++++++||++|+.|+|++|++|+. +|+++|+||+|+|++..+++...+
T Consensus 190 ~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~dek~Gvl~~~--~G~~~vvEysqip~~~~~~~~~~~ 266 (420)
T PF01704_consen 190 RGIEYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGMEVVPKTSPDEKGGVLCRY--DGKLQVVEYSQIPKEHMAEFKDIK 266 (420)
T ss_dssp TT--EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEEEEE-CSTTTSSEEEEEE--TTEEEEEEGGGS-HHGHHHHTSTT
T ss_pred cCCeEEEEEecCC-cccccCHHHHHHHHhccchhheeeeecCCCCCceeEEEEe--CCccEEEEeccCCHHHHHhhhccc
Confidence 9999999999999 7999999999999999999999999999999999999998 799999999999999877766555
Q ss_pred CceeeeccceeeeEeehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccCCceeEEEEecCcccccc
Q 016006 244 GRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPV 323 (397)
Q Consensus 244 g~~~f~~~Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~~~~~~~~v~R~~~FsPv 323 (397)
+.+.| |+||+||+++||+++++.....||||+|.|+|||.++.++++|||++|+|++..++++.+++|+| +||+||
T Consensus 267 ~~~~F---ntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~~~i~~f~~~~~v~V~R-~rF~Pv 342 (420)
T PF01704_consen 267 GFLLF---NTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFETAIGFAIFQFDNSFAVEVPR-DRFAPV 342 (420)
T ss_dssp TSBEE---EEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEECGGGGGGGGCTSEEEEEE-G-GG--B-
T ss_pred cceEE---EeceeeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEeehhhhhchHhhccCcEEEEEcH-HHcCCc
Confidence 55555 55567999999999998766689999999999999988999999999999999999999999999 799999
Q ss_pred ccCCC
Q 016006 324 KNANG 328 (397)
Q Consensus 324 Kn~~~ 328 (397)
||+++
T Consensus 343 Kn~~d 347 (420)
T PF01704_consen 343 KNTSD 347 (420)
T ss_dssp SSHHH
T ss_pred cccCc
Confidence 99964
No 9
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=1.9e-74 Score=604.19 Aligned_cols=365 Identities=28% Similarity=0.363 Sum_probs=306.0
Q ss_pred HHHHHHHHhHhhccCCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcce
Q 016006 3 ERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAI 82 (397)
Q Consensus 3 ~~~~~~~~G~~~i~~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~i 82 (397)
+..+|++.|+++| ||||||+||||||||||+++||+++|+++++++||||++++||+++|+++.+.... +++.|
T Consensus 114 ~~~~~~~~Gl~~l--~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~----~~~~I 187 (615)
T PLN02830 114 EFVELEEAGLREA--GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAK----KGRKI 187 (615)
T ss_pred hhhHHHHHHHHHh--CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhccc----CCCCc
Confidence 3467999999999 59999999999999999999999999999999999999999999999998765432 57889
Q ss_pred eEEEecCccchHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeec-CCcccccC--CCccccccCCCchHhHHHhhCchHH
Q 016006 83 HWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK-DGRFIMET--PYKVAKAPDGNGGVYSALKSSKLLE 159 (397)
Q Consensus 83 pl~IMtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~-~g~~~l~~--~~~i~~~P~G~Ggi~~~L~~sg~l~ 159 (397)
||+||||+.||++|++||++|+|||++++||+||+|+++||++. +|++++++ +++++|+|+||||+|.+|+++|+|+
T Consensus 188 Pl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd 267 (615)
T PLN02830 188 PLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLD 267 (615)
T ss_pred eEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999985 59999988 8899999999999999999999999
Q ss_pred HHHHCCceEEEEEcCCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEe-CCCCc--eEEEEeccCChhhh
Q 016006 160 DMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR-GKGGP--LTVVEYSELDPSLA 236 (397)
Q Consensus 160 ~l~~~G~eyv~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~-~~~g~--~~vvEy~el~~~~~ 236 (397)
+|+++|++|+||+|+||+|++.+||.|+||++.++++|+++|++| .|.|++|++|+. +.||+ +++|||+|++++++
T Consensus 268 ~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K-~~~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~ 346 (615)
T PLN02830 268 KWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPR-KAKEAIGAIAKLTHKDGREMVINVEYNQLDPLLR 346 (615)
T ss_pred HHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEEC-CCCcccceEEEEecCCCCeeeEEEeecccCHHHH
Confidence 999999999999999999999999999999999999999999999 589999999984 23566 58899999999877
Q ss_pred hhccC------CCCceeeeccceeeeEeehHHHHHHhhccccCccceeeccccCCCCC----CcchhhhhHHHhhhcccC
Q 016006 237 SAINQ------ETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHG----QTVGFKLEQFIFDAFPYA 306 (397)
Q Consensus 237 ~~~~~------~~g~~~f~~~Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~----~~~~~klE~fi~D~~~~~ 306 (397)
...++ .+| +++++||||++|++|+.++++++.-...+|..++.|. .|+ +....++|++|+|+....
T Consensus 347 ~a~~p~g~l~~~~~-~s~FPgNtN~L~v~L~a~~~~l~~~~~~lp~ivNpK~---~d~~~~v~q~~trle~~mq~f~~~~ 422 (615)
T PLN02830 347 ATGHPDGDVNDETG-YSPFPGNINQLILKLGPYVKELAKTGGVIEEFVNPKY---KDATKTAFKSPTRLECMMQDYPKTL 422 (615)
T ss_pred hccCCCcccccccc-cccCCCCceeeEeeHHHHHHHHHhCCCccceeccCcc---cCCCCceeecchHHHHHHHHHhhhc
Confidence 65432 233 4455699999999999999999753344676444443 343 245688999999987654
Q ss_pred C-ce-eEEEE-ecCccccccccC-C--------CCCCCCHHHHHHHHHHHHHHHHHHcCceeecCCCC-CCCc--EEeCc
Q 016006 307 P-ST-ALFEV-LREEEFAPVKNA-N--------GSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPL-YATG--VEVSP 371 (397)
Q Consensus 307 ~-~~-~~~~v-~R~~~FsPvKn~-~--------~~~~dsp~ta~~~l~~~~~~~l~~~g~~~~~~~~~-~~~~--~eisp 371 (397)
. +. ..++| +|+.+|+||||+ + |.+.+|+.+|+.|+|+.+..+|..+|+.+...... ...+ .+.-|
T Consensus 423 ~~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P 502 (615)
T PLN02830 423 PPSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVFNGIEVEVGP 502 (615)
T ss_pred CcccccCceecCchheeccccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHhcCCccccCccccccCCcccCCCC
Confidence 2 12 23566 445599999999 4 66789999999999999999999999876422211 1112 23446
Q ss_pred ccceeCC
Q 016006 372 LCSYAGE 378 (397)
Q Consensus 372 ~~sy~gE 378 (397)
.|.+..+
T Consensus 503 ~I~L~p~ 509 (615)
T PLN02830 503 RIVLKPA 509 (615)
T ss_pred eEEECch
Confidence 7776553
No 10
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-73 Score=570.06 Aligned_cols=358 Identities=36% Similarity=0.554 Sum_probs=324.9
Q ss_pred hHhhccCCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCc
Q 016006 11 GLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSP 90 (397)
Q Consensus 11 G~~~i~~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~ 90 (397)
|+..+..||+|||+||||||||||+++|||+++|. +|+||||+++++|+.++++ ++++|||+||||
T Consensus 97 ~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~qIk~ln~~-----------~~~~vP~~iMtS- 162 (472)
T COG4284 97 GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQIKYLNRQ-----------YNVDVPLYIMTS- 162 (472)
T ss_pred hhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHHHHHHHHH-----------hCCCCCEEEEec-
Confidence 78888889999999999999999999999999885 7999999999999988876 568899999999
Q ss_pred cchHHHHHHHhhcCCCCCCCCcEEEEEcCCee-eeecCCcccccCCCc-cccccCCCchHhHHHhhCchHHHHHHCCceE
Q 016006 91 FTDDATRKYFEGHKYFGLESDQVTFFQQGTIP-CVSKDGRFIMETPYK-VAKAPDGNGGVYSALKSSKLLEDMATRGIKY 168 (397)
Q Consensus 91 ~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P-~~~~~g~~~l~~~~~-i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~ey 168 (397)
.|++.+..||+.++|||+++++|+||+|+.+| |++.+|+.+..+.++ ++|+|+||||+|.+|.+||++++|.++|+||
T Consensus 163 ~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~ 242 (472)
T COG4284 163 LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEY 242 (472)
T ss_pred CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceE
Confidence 99999999999999999999999999999999 667889988877666 9999999999999999999999999999999
Q ss_pred EEEEcCCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceee
Q 016006 169 IDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRF 248 (397)
Q Consensus 169 v~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f 248 (397)
++|+|||| |++++||.|+|+++..++++++|++.|+.|+|+||+++.. +|+++|+||+|+|++.+.++. +.|.++|
T Consensus 243 lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~--~g~~rllEysev~~~~~~~~~-s~~~~~~ 318 (472)
T COG4284 243 LFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY--DGKLRLLEYSEVPNEHREEFT-SDGKLKY 318 (472)
T ss_pred EEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe--CCceEEEEEecCChhHhhhhc-cccceee
Confidence 99999999 7999999999999999999999999999999999999987 799999999999999888776 5788999
Q ss_pred eccc-eeeeEeehHHHHHHhhccccCccceeeccccCCCC--C------CcchhhhhH-HH-hhhcccC--CceeEEEEe
Q 016006 249 CWSN-VCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIH--G------QTVGFKLEQ-FI-FDAFPYA--PSTALFEVL 315 (397)
Q Consensus 249 ~~~N-i~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~--~------~~~~~klE~-fi-~D~~~~~--~~~~~~~v~ 315 (397)
+.+| |++|++++++|.+... ..||+|.|.||||+.+ . .+++++||. || ||+|.+. +++.++.||
T Consensus 319 ~n~Nni~l~~~~~~~l~~~~~---l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~~FI~fDlF~~~s~~~~~~~~vp 395 (472)
T COG4284 319 FNTNNIWLHLFSVKFLKEAAY---LNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFENEFIPFDLFLYKSDENGGLLLVP 395 (472)
T ss_pred eccccceeehhHHHHHHhhhc---cCCcchhhhcccCccccceeeccccccchhhccccccceeeeEEEecCCCceEecc
Confidence 8787 9999999999987654 4799999999999875 1 378999996 99 9999998 899999999
Q ss_pred cCccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCceeecCCCCCCCcEEeCcccceeCCcchhhhcCcEecCCccc
Q 016006 316 REEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEI 395 (397)
Q Consensus 316 R~~~FsPvKn~~~~~~dsp~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~eisp~~sy~gE~l~~~~~~~~~~~p~~~ 395 (397)
|.+||+|+||-.|...++++|+..++... ..|++..|.++.+.+ ..+.++..+|+||++.-...++.|--.++|
T Consensus 396 R~~~f~Plkn~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~is~nv-----~~~~~~~lk~~~e~~~l~~~~~s~~e~~ii 469 (472)
T COG4284 396 RFGEFSPLKNLEGSHFDNVETFTCGIPRI-PLILELEGLTISGNV-----LFGRNVTLKYASENTSLCIPNKSFLENVII 469 (472)
T ss_pred ccCCCCchhhccCCCCCcHHhhhcccccc-cchhhhccceecCce-----EeeecceeeecCCCceEeccCCeeeeeeeE
Confidence 99999999999999899999999998775 459999999886432 478889999999999865677776554443
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=6.5e-67 Score=503.28 Aligned_cols=261 Identities=34% Similarity=0.479 Sum_probs=243.3
Q ss_pred EEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHH
Q 016006 20 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 99 (397)
Q Consensus 20 vavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~ 99 (397)
+|+|+||||+|||||++.||+++||++++|||+||+++++|++++.++. +++.|||+||||++||+.|++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~---------~~~~Ip~~imts~~t~~~t~~~ 71 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDL---------YSCKIPEQLMNSKYTHEKTQCY 71 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhh---------cCCCCCEEEEcCchhHHHHHHH
Confidence 6899999999999999999999999999999999999999999888753 2567999999999999999999
Q ss_pred HhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCccc
Q 016006 100 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 179 (397)
Q Consensus 100 ~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l~ 179 (397)
|++|+ ++.++|++|+|+++||++.+|+..+++++++.|+|+||||+|.+|..+|++++|+++|++|++|+|+||+|+
T Consensus 72 l~~~~---~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la 148 (266)
T cd04180 72 FEKIN---QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLV 148 (266)
T ss_pred HHHcC---CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCc
Confidence 99987 567899999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhcc-----CCCCceeeecccee
Q 016006 180 RVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAIN-----QETGRLRFCWSNVC 254 (397)
Q Consensus 180 ~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~-----~~~g~~~f~~~Ni~ 254 (397)
.++||.++|+++.++++++++|++|+.++|++|++|..+ +|++++|||+|++++++++.. ..+|.++|+++|||
T Consensus 149 ~v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~-~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 227 (266)
T cd04180 149 KVADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIANI-NGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTN 227 (266)
T ss_pred cccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEec-CCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEE
Confidence 988999999999999999999999999999999999872 399999999999999877531 13678999999999
Q ss_pred eeEeehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccCCceeEEEEecCcccccccc
Q 016006 255 LHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKN 325 (397)
Q Consensus 255 ~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~~~~~~~~v~R~~~FsPvKn 325 (397)
||||+++||+++++ |+|++++++.+++|+|++||+||||
T Consensus 228 ~~~~~l~~l~~~~~--------------------------------d~~~~~~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 228 NLINFLVEFKDRVD--------------------------------DIIEFTDDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred EEEEEHHHHHHHHH--------------------------------HHHhccCceEEEEeCchhccccCCC
Confidence 99999999988763 9999999999999999999999998
No 12
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-57 Score=441.42 Aligned_cols=292 Identities=21% Similarity=0.302 Sum_probs=264.4
Q ss_pred HHhHhhccCCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEec
Q 016006 9 KMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 88 (397)
Q Consensus 9 ~~G~~~i~~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMt 88 (397)
..+..++. |+||++|+||+||.||+.+||++ |+++.|.|||++.++||..|.+. |++.+|+++|+
T Consensus 95 ~~~~~~L~--KLavlKLNGGlGttmGc~gPKS~--ieVR~g~tFLDL~V~QIe~LN~~-----------Y~~dVPlvLMN 159 (498)
T KOG2638|consen 95 ELSKSLLN--KLAVLKLNGGLGTTMGCKGPKSV--IEVRDGLTFLDLTVRQIENLNKT-----------YNVDVPLVLMN 159 (498)
T ss_pred hhHHHhhh--heEEEEecCCcCCccccCCCcee--EEEcCCCchhHHHHHHHHHHHhh-----------cCCCCCEEEec
Confidence 56677888 99999999999999999999999 67799999999999999987754 68899999999
Q ss_pred CccchHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccC---C-CccccccCCCchHhHHHhhCchHHHHHHC
Q 016006 89 SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMET---P-YKVAKAPDGNGGVYSALKSSKLLEDMATR 164 (397)
Q Consensus 89 S~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~---~-~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~ 164 (397)
|++|+++|.++++++.++ +.+|+.|.|.++|+++.|..+++.. + ...+|+|+|||++|.+|+.||.||+|+++
T Consensus 160 SfnTdedT~kil~ky~~~---kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaq 236 (498)
T KOG2638|consen 160 SFNTDEDTQKILKKYAGS---KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQ 236 (498)
T ss_pred ccccchHHHHHHHHhcCC---ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhC
Confidence 999999999999996554 4579999999999999999988754 2 34789999999999999999999999999
Q ss_pred CceEEEEEcCCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCC
Q 016006 165 GIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETG 244 (397)
Q Consensus 165 G~eyv~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g 244 (397)
|+||+||+|+||+ ++++|..++.+++.+++++.|+|+.|+.++.|+|+++.. +|+++++||.|+|++...++. +..
T Consensus 237 GkEylFVSNiDNL-GAtvDL~ILn~~i~~~~ey~MEvTdKT~aDvKgGtLi~y--~G~lrlLEiaQVP~ehv~eFk-S~k 312 (498)
T KOG2638|consen 237 GKEYLFVSNIDNL-GATVDLNILNHVINNNIEYLMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFK-SIK 312 (498)
T ss_pred CceEEEEeccccc-cceeeHHHHHHHhcCCCceEEEecccchhhcccceEEee--cCEEEEEEeccCChhHhhhhc-cce
Confidence 9999999999998 899999999999999999999999999999999999998 799999999999999998875 445
Q ss_pred ceeeeccceeeeEeehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccCCceeEEEEecCccccccc
Q 016006 245 RLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVK 324 (397)
Q Consensus 245 ~~~f~~~Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~~~~~~~~v~R~~~FsPvK 324 (397)
.++++ |+||.|+++.+++++++...-.++.+...|+|.+ ..+.+|||+.+++++++++++.++.|+|+ ||.|||
T Consensus 313 kFkif--NTNNlWinLkavKrlve~~~l~meIi~N~kti~~---~~~viQleTa~GaaIk~F~na~gv~VpRs-RFlPVK 386 (498)
T KOG2638|consen 313 KFKIF--NTNNLWINLKAVKKLVEENALNMEIIVNPKTIDR---GIEVIQLETAAGAAIKFFDNAIGVNVPRS-RFLPVK 386 (498)
T ss_pred eEEEe--ccCCeEEehHHHHHHhhcCcccceeecChhhccC---CceEEEEhhhhhHHHHhCCCceeeecccc-cccccc
Confidence 56664 8889999999999999875556788888887633 46679999999999999999999999999 999999
Q ss_pred cCCC
Q 016006 325 NANG 328 (397)
Q Consensus 325 n~~~ 328 (397)
+++|
T Consensus 387 t~sD 390 (498)
T KOG2638|consen 387 TCSD 390 (498)
T ss_pred cccc
Confidence 9976
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=4.2e-19 Score=176.38 Aligned_cols=269 Identities=17% Similarity=0.158 Sum_probs=208.8
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
.+.+|+||.|+||||.++.||.|+|+ +|||++++.++....+. .--++..-++..+.+++
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v---aGkpMl~hVi~~a~~l~-----------------~~~i~vVvGh~ae~V~~ 61 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV---AGKPMLEHVIDAARALG-----------------PDDIVVVVGHGAEQVRE 61 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc---cCccHHHHHHHHHhhcC-----------------cceEEEEEcCCHHHHHH
Confidence 56899999999999999999999999 99999999988877432 11244457889999999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCce-EEEEEcCCCc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIK-YIDCYGVDNA 177 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~e-yv~v~~vDN~ 177 (397)
.+.+.. ++.|+.|. .|.|+|.+..+... .+..+.+ .+.|.++|.|
T Consensus 62 ~~~~~~-------~v~~v~Q~---------------------eqlGTgHAV~~a~~------~l~~~~~g~vLVl~GD~P 107 (460)
T COG1207 62 ALAERD-------DVEFVLQE---------------------EQLGTGHAVLQALP------ALADDYDGDVLVLYGDVP 107 (460)
T ss_pred Hhcccc-------CceEEEec---------------------ccCChHHHHHhhhh------hhhcCCCCcEEEEeCCcc
Confidence 997621 57888887 49999999988633 3445566 8999999999
Q ss_pred cccccccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCC-ceEEEEeccCChhhhhhccCCCCceeeeccceee
Q 016006 178 LVRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGG-PLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 255 (397)
Q Consensus 178 l~~~~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g-~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~ 255 (397)
|....-.. ++.++...++.+++-...-.+|..++.++... +| ..++||..+.+++-.. ..--|+++
T Consensus 108 Lit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~--~g~V~~IVE~KDA~~eek~----------I~eiNtGi 175 (460)
T COG1207 108 LITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDG--NGEVTAIVEEKDASEEEKQ----------IKEINTGI 175 (460)
T ss_pred cCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcC--CCcEEEEEEcCCCCHHHhc----------CcEEeeeE
Confidence 95543333 77888878899988888888899987776654 44 4789999999887432 22359999
Q ss_pred eEeehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccCC----ceeEEEEecCccccccccCCCCCC
Q 016006 256 HMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAP----STALFEVLREEEFAPVKNANGSNF 331 (397)
Q Consensus 256 ~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~~----~~~~~~v~R~~~FsPvKn~~~~~~ 331 (397)
++|+-..|.+.+..+. . .| .|-|+++.|++.++. ....+.++..+|+..|+|.
T Consensus 176 y~f~~~~L~~~L~~l~----------------n-nN-aqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R----- 232 (460)
T COG1207 176 YAFDGAALLRALPKLS----------------N-NN-AQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDR----- 232 (460)
T ss_pred EEEcHHHHHHHHHHhc----------------c-cc-ccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcH-----
Confidence 9999999998886532 2 34 899999999999974 5567888888999999888
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCceeecCCCCC---------CCcEEeCcccceeCC
Q 016006 332 DTPDSARLLVLRLHTRWVIAAGGFLTHSVPLY---------ATGVEVSPLCSYAGE 378 (397)
Q Consensus 332 dsp~ta~~~l~~~~~~~l~~~g~~~~~~~~~~---------~~~~eisp~~sy~gE 378 (397)
-..+.+++.|.++..+.+|.+|+.+.+ |.. ...++|.|-+-+.|.
T Consensus 233 ~qLa~~e~~~q~r~~~~~m~~GVtl~d--P~t~~i~~dv~ig~DvvI~p~v~l~G~ 286 (460)
T COG1207 233 VQLAEAERIMQRRIAEKLMLAGVTLID--PATTYIRGDVEIGRDVVIEPNVILEGN 286 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEeC--CCeEEEcCcEEECCceEEecCcEEeee
Confidence 558899999999999999999999862 221 113566676666664
No 14
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.33 E-value=2.7e-10 Score=117.68 Aligned_cols=249 Identities=17% Similarity=0.165 Sum_probs=140.3
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
.+.+|+||||.||||+.+.||.|+|+ .|||++++.++.+.+ .++ .-++++..+..+.+.+
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~~~--~~iivv~~~~~~~i~~ 64 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTL---LGEPMLRFVYRALRP---------------LFG--DNVWTVVGHRADMVRA 64 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceeccc---CCCcHHHHHHHHHHh---------------cCC--CcEEEEECCCHHHHHH
Confidence 57899999999999998899999998 899999999887752 121 1233344456677777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++... ++.+..|+ .|.|+|+..... ++.+...+.+++++++.|+++
T Consensus 65 ~~~~~--------~~~~v~~~---------------------~~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~ 110 (456)
T PRK14356 65 AFPDE--------DARFVLQE---------------------QQLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPL 110 (456)
T ss_pred hcccc--------CceEEEcC---------------------CCCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCccc
Confidence 66431 23333332 367777655443 344544467899999999986
Q ss_pred ccccccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeE
Q 016006 179 VRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 257 (397)
Q Consensus 179 ~~~~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~ 257 (397)
....+.. ++..+ .++++++-+.+-.+|.+ .|++... +|+ |.++.|-++.......+ ..+..|+++|.
T Consensus 111 i~~~~i~~li~~~--~~~~~~l~~~~~~~~~~-~g~v~~~--~g~--V~~~~ek~~~~~~~~~~-----~~~~~~~GiY~ 178 (456)
T PRK14356 111 VTTDTIDDFLKEA--AGADLAFMTLTLPDPGA-YGRVVRR--NGH--VAAIVEAKDYDEALHGP-----ETGEVNAGIYY 178 (456)
T ss_pred CCHHHHHHHHHHH--hcCCEEEEEEEcCCCCC-ceEEEEc--CCe--EEEEEECCCCChHHhhh-----hcCeEEEEEEE
Confidence 4322222 33332 25566655555555554 4776553 563 44444432210000000 01235889999
Q ss_pred eehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccC--C--ceeEEEEecCccccccccCCCCCCCC
Q 016006 258 FTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYA--P--STALFEVLREEEFAPVKNANGSNFDT 333 (397)
Q Consensus 258 ~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~--~--~~~~~~v~R~~~FsPvKn~~~~~~ds 333 (397)
|+.++++++++.+... . .+-|.++.|+++.. . +..++.+....+|.-+.+. ++
T Consensus 179 f~~~~l~~ll~~l~~~--------------~----~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp-----~d 235 (456)
T PRK14356 179 LRLDAVESLLPRLTNA--------------N----KSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTP-----AE 235 (456)
T ss_pred EEHHHHHHHHHhccCc--------------c----cCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCH-----HH
Confidence 9999988776532110 0 11123344555543 1 3444555433355666444 33
Q ss_pred HHHHHHHHHHHHHHHHHHcCcee
Q 016006 334 PDSARLLVLRLHTRWVIAAGGFL 356 (397)
Q Consensus 334 p~ta~~~l~~~~~~~l~~~g~~~ 356 (397)
...|+..+......-+...|+.+
T Consensus 236 l~~a~~~l~~~~~~~~~~~~~~i 258 (456)
T PRK14356 236 LVRSEELLRARIVEKHLESGVLI 258 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEE
Confidence 44555555443333344456654
No 15
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.32 E-value=7e-11 Score=115.75 Aligned_cols=182 Identities=18% Similarity=0.231 Sum_probs=125.8
Q ss_pred CEEEEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHH
Q 016006 19 KLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 95 (397)
Q Consensus 19 kvavviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~ 95 (397)
.+.+|+||||.||||.. ..||.|+|| .+|+++++.++.+.. .++. -++|.+.++..+.
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv---~gkPmI~~~l~~l~~---------------aGi~-~I~ii~~~~~~~~ 63 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI---YDKPMIYYPLSTLML---------------AGIR-DILIISTPQDTPR 63 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEE---CCEEHHHHHHHHHHH---------------CCCC-EEEEEecCCchHH
Confidence 46789999999999985 889999999 899999998888763 1222 2355666666778
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCC
Q 016006 96 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 175 (397)
Q Consensus 96 t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vD 175 (397)
++++|...+.||++ +.+..|+ .|.|+|+.+....+ +.. +-+ +.+++.|
T Consensus 64 ~~~~l~~g~~~g~~---i~y~~q~---------------------~~~Gta~Al~~a~~------~i~-~~~-~~lv~gD 111 (292)
T PRK15480 64 FQQLLGDGSQWGLN---LQYKVQP---------------------SPDGLAQAFIIGEE------FIG-GDD-CALVLGD 111 (292)
T ss_pred HHHHHcCccccCce---eEEEECC---------------------CCCCHHHHHHHHHH------HhC-CCC-EEEEECC
Confidence 99999877778873 5555554 48999999886432 332 223 5667799
Q ss_pred CccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceee
Q 016006 176 NALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 255 (397)
Q Consensus 176 N~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~ 255 (397)
|++....-..++-.|.+++.++++-+.+..+| ++.|++..+ .+|+ |+++.|-|..- . .+..|+++
T Consensus 112 ~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p-~~yGvv~~d-~~g~--v~~i~EKP~~p---------~--s~~a~~Gi 176 (292)
T PRK15480 112 NIFYGHDLPKLMEAAVNKESGATVFAYHVNDP-ERYGVVEFD-QNGT--AISLEEKPLQP---------K--SNYAVTGL 176 (292)
T ss_pred eeeeccCHHHHHHHHHhCCCCeEEEEEEcCCc-ccCcEEEEC-CCCc--EEEEEECCCCC---------C--CCEEEEEE
Confidence 98743333347777777777777665555545 466988775 3563 55666654310 1 13478999
Q ss_pred eEeehHHHHHH
Q 016006 256 HMFTLDFLNQV 266 (397)
Q Consensus 256 ~~~~l~~L~~~ 266 (397)
++|+-+.++.+
T Consensus 177 Y~~~~~v~~~~ 187 (292)
T PRK15480 177 YFYDNDVVEMA 187 (292)
T ss_pred EEEChHHHHHH
Confidence 99998876553
No 16
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.32 E-value=1.1e-10 Score=117.77 Aligned_cols=197 Identities=15% Similarity=0.185 Sum_probs=125.5
Q ss_pred CCEEEEEecCCCCCcCCC---CCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccch
Q 016006 18 GKLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 93 (397)
Q Consensus 18 gkvavviLaGG~GTRLg~---~~PKg~~~i~l~~~k-sll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~ 93 (397)
+++-+||||||.||||.. +.||.|+|+ .|| +++++.++.+.+ .++. -+++...+..
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv---~gk~pli~~~l~~l~~---------------~Gi~--~i~iv~~~~~ 61 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPF---GGKYRIIDFTLSNCAN---------------SGID--TVGVLTQYQP 61 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeee---CCceeehhHHHHHHHh---------------CCCC--EEEEEecCCH
Confidence 478899999999999985 889999999 889 899999998863 1322 2333446788
Q ss_pred HHHHHHHhhcCCCCCCCC--cEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEE
Q 016006 94 DATRKYFEGHKYFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 171 (397)
Q Consensus 94 ~~t~~~~~~~~~fgl~~~--~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v 171 (397)
+.++++|++...|+++.. .+.+. |. ... ..-...|.|+|+.+.... +.+....-++++|
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~~~i~-~~---~~~----------~~~~~~~~Gta~al~~a~-----~~l~~~~~~~~lV 122 (380)
T PRK05293 62 LELNNHIGIGSPWDLDRINGGVTIL-PP---YSE----------SEGGKWYKGTAHAIYQNI-----DYIDQYDPEYVLI 122 (380)
T ss_pred HHHHHHHhCCCcccccCCCCCEEEe-CC---ccc----------CCCCcccCCcHHHHHHHH-----HHHHhCCCCEEEE
Confidence 999999987667776532 12221 10 000 000112579988776542 2332223478999
Q ss_pred EcCCCccccccccccchhhhccCCcEEEEEeecC-CCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeec
Q 016006 172 YGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCW 250 (397)
Q Consensus 172 ~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~-~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~ 250 (397)
.+.|++. ...--.++-.|...++++++-+.+.. ....+.|++..+ .+| .|.++.|-|... . -..
T Consensus 123 ~~gD~l~-~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d-~~g--~V~~~~eKp~~~---------~--~~~ 187 (380)
T PRK05293 123 LSGDHIY-KMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTD-ENM--RIVEFEEKPKNP---------K--SNL 187 (380)
T ss_pred ecCCEEE-cCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEEC-CCC--cEEEEEeCCCCC---------C--cce
Confidence 9999974 33223367777777888665443221 123456887765 245 456776654321 0 123
Q ss_pred cceeeeEeehHHHHHHhh
Q 016006 251 SNVCLHMFTLDFLNQVAN 268 (397)
Q Consensus 251 ~Ni~~~~~~l~~L~~~~~ 268 (397)
.|+++++|+.+.|.+++.
T Consensus 188 ~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 188 ASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred eeeEEEEEcHHHHHHHHH
Confidence 689999999998877654
No 17
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.29 E-value=6.8e-10 Score=113.75 Aligned_cols=243 Identities=20% Similarity=0.233 Sum_probs=149.0
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
++.+||||||.||||+...||.|+|+ .|+|++++.++.+++. .. ..+|++ .+..+.+++
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi---~gkPli~~~i~~l~~~---------------~~--~i~Ivv-~~~~~~i~~ 60 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI---CGKPMLFYILKEAFAI---------------SD--DVHVVL-HHQKERIKE 60 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE---CCccHHHHHHHHHHHc---------------CC--cEEEEE-CCCHHHHHH
Confidence 45689999999999999999999999 8999999999988731 01 124445 456788999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.+. ++ .+.+..|+ ...+.|+|+.+..+. ...+++++.+.|+++
T Consensus 61 ~~~~~--~~----~v~~~~~~-------------------~~~~~gt~~al~~~~----------~~~d~vlv~~gD~p~ 105 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQD-------------------LENYPGTGGALMGIE----------PKHERVLILNGDMPL 105 (430)
T ss_pred HHHhc--CC----ceEEEEec-------------------CccCCCcHHHHhhcc----------cCCCeEEEEECCccC
Confidence 98752 22 35555444 234678888776521 124789999999986
Q ss_pred ccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 179 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 179 ~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
. ++..+..+.+.++++.+-+.+..+|.. .|++..+ +| .++++.+-+.... .....+..|+++++|
T Consensus 106 ~---~~~~l~~l~~~~~~~~v~~~~~~~~~~-~g~v~~d--~g--~v~~i~e~~~~~~-------~~~~~~~~~~Giyif 170 (430)
T PRK14359 106 V---EKDELEKLLENDADIVMSVFHLADPKG-YGRVVIE--NG--QVKKIVEQKDANE-------EELKIKSVNAGVYLF 170 (430)
T ss_pred C---CHHHHHHHHhCCCCEEEEEEEcCCCcc-CcEEEEc--CC--eEEEEEECCCCCc-------ccccceEEEeEEEEE
Confidence 3 566667677777787766666555544 5765543 45 3444443322110 011123468889999
Q ss_pred ehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccC----CceeEEEEecCccccccccCCCCCCCCH
Q 016006 259 TLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYA----PSTALFEVLREEEFAPVKNANGSNFDTP 334 (397)
Q Consensus 259 ~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~----~~~~~~~v~R~~~FsPvKn~~~~~~dsp 334 (397)
+.++|+++.+.... +..+-|.++.|+++.. .+..+++++. ..+.-|.+. ++.
T Consensus 171 ~~~~l~~~~~~~~~------------------~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~-~~w~dI~t~-----~dl 226 (430)
T PRK14359 171 DRKLLEEYLPLLKN------------------QNAQKEYYLTDIIALAIEKGETIKAVFVDE-ENFMGVNSK-----FEL 226 (430)
T ss_pred EHHHHHHHHHhcCc------------------ccccCceehhhHHHHHHHcCCeEEEEEcCC-CEEeCCCCH-----HHH
Confidence 99999887653211 0012344445555431 2344565542 245555332 345
Q ss_pred HHHHHHHHHHHHHHHHHcCcee
Q 016006 335 DSARLLVLRLHTRWVIAAGGFL 356 (397)
Q Consensus 335 ~ta~~~l~~~~~~~l~~~g~~~ 356 (397)
..|+..|....++-++..|+.+
T Consensus 227 ~~a~~~l~~~~~~~~~~~g~~~ 248 (430)
T PRK14359 227 AKAEEIMQERIKKNAMKQGVIM 248 (430)
T ss_pred HHHHHHHHHHHHHHHHHcCCEE
Confidence 5666555555445455667554
No 18
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.28 E-value=5.5e-11 Score=119.70 Aligned_cols=193 Identities=11% Similarity=0.106 Sum_probs=120.9
Q ss_pred CCEEEEEecCCCCCcCC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccch
Q 016006 18 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 93 (397)
Q Consensus 18 gkvavviLaGG~GTRLg---~~~PKg~~~i~l~~~k-sll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~ 93 (397)
+++.+|+||||.||||. .+.||+|+|| .|| ++++++++.+.+ .+ +--+++...+..
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV---~gk~PlIe~~l~~L~~---------------~G--i~~I~iv~~~~~ 60 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPF---GGRYRLIDFPLSNMVN---------------AG--IRNVFIFFKNKE 60 (369)
T ss_pred CcEEEEEECCCCCccccccccCCccccccc---CCeeeEEEEEhhhhhc---------------cC--CCEEEEEeCCCc
Confidence 36889999999999998 5889999999 899 899999998873 13 223555555666
Q ss_pred H-HHHHHHhhcCCCCCCCCc---EEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEE
Q 016006 94 D-ATRKYFEGHKYFGLESDQ---VTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYI 169 (397)
Q Consensus 94 ~-~t~~~~~~~~~fgl~~~~---v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv 169 (397)
+ .++++|.+...||++..+ +.++.|+ ..|.|+|+....... .+.+...+-+++
T Consensus 61 ~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e--------------------~~~l~tg~~~a~~~a---~~~l~~~~~~~~ 117 (369)
T TIGR02092 61 RQSLFDHLGSGREWDLHRKRDGLFVFPYND--------------------RDDLSEGGKRYFSQN---LEFLKRSTSEYT 117 (369)
T ss_pred HHHHHHHHhCCCCCCcccccCcEEEEeccC--------------------CCCcccChHHHHHHH---HHHHHhCCCCEE
Confidence 5 999999876677775321 1122222 235666776433222 222322234789
Q ss_pred EEEcCCCccccccccccchhhhccCCcEEEEEeecC--CCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCcee
Q 016006 170 DCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA--YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLR 247 (397)
Q Consensus 170 ~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~--~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~ 247 (397)
+|+|+|++. ...--.++-+|.++++++++-+.+.. .+...+|++..+ .+|+ +.++.+-++. . ..
T Consensus 118 lvlnGD~l~-~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~-~~g~--v~~~~~~~~~--------~--~~ 183 (369)
T TIGR02092 118 VVLNSHMVC-NIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFD-ESGK--VKSIGQNLNP--------E--EE 183 (369)
T ss_pred EEECCCEEE-ecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEc-CCCC--EEeccccCCC--------C--Cc
Confidence 999999963 43333477888888898876665432 345555655554 2453 3333221110 0 01
Q ss_pred eeccceeeeEeehHHHHHHhh
Q 016006 248 FCWSNVCLHMFTLDFLNQVAN 268 (397)
Q Consensus 248 f~~~Ni~~~~~~l~~L~~~~~ 268 (397)
...|+++|+|+.+.+.++++
T Consensus 184 -~~~~~Giyi~~~~~l~~~l~ 203 (369)
T TIGR02092 184 -ENISLDIYIVSTDLLIELLY 203 (369)
T ss_pred -ceeeeeEEEEEHHHHHHHHH
Confidence 12478899999887765554
No 19
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.28 E-value=1.1e-10 Score=113.99 Aligned_cols=178 Identities=16% Similarity=0.210 Sum_probs=122.0
Q ss_pred EEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||.. ..||.|+|+ .+|+++++.++.+.. .++. .++|.+..+..+.+++
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv---~gkPmI~~~L~~l~~---------------aGi~-~I~iv~~~~~~~~~~~ 62 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLML---------------AGIR-DILIISTPQDTPRFQQ 62 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEE---CCEEhHHHHHHHHHH---------------CCCC-EEEEEecCCcHHHHHH
Confidence 58999999999974 889999999 899999998888763 1222 2356677777788999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
+|.....||+ ++.+..|+ .|.|+|+.+..... +. +-+.+.+++.||++
T Consensus 63 ~lg~g~~~g~---~i~~~~q~---------------------~~~Gta~al~~a~~------~l--~~~~~~li~gD~i~ 110 (286)
T TIGR01207 63 LLGDGSQWGV---NLSYAVQP---------------------SPDGLAQAFIIGED------FI--GGDPSALVLGDNIF 110 (286)
T ss_pred HhccccccCc---eEEEEEcc---------------------CCCCHHHHHHHHHH------Hh--CCCCEEEEECCEec
Confidence 9987667776 35555453 48899998876532 22 22445666899986
Q ss_pred ccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 179 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 179 ~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
....-..++-.|.+.++++++-+.+..+| ++.|++..+ ++| .|+++.|-|.. + .. +..|+++++|
T Consensus 111 ~~~~l~~ll~~~~~~~~~~ti~~~~v~~p-~~yGvv~~d-~~g--~V~~i~EKp~~------~---~s--~~~~~GiYi~ 175 (286)
T TIGR01207 111 YGHDLSDLLKRAAARESGATVFAYQVSDP-ERYGVVEFD-SNG--RAISIEEKPAQ------P---KS--NYAVTGLYFY 175 (286)
T ss_pred cccCHHHHHHHHHhcCCCcEEEEEEccCH-HHCceEEEC-CCC--eEEEEEECCCC------C---CC--CEEEEEEEEE
Confidence 43222346777777777777666555555 466988775 355 45666665431 0 11 3478999999
Q ss_pred ehHHHHH
Q 016006 259 TLDFLNQ 265 (397)
Q Consensus 259 ~l~~L~~ 265 (397)
+-+.++.
T Consensus 176 ~~~i~~~ 182 (286)
T TIGR01207 176 DNRVVEI 182 (286)
T ss_pred chHHHHH
Confidence 9887543
No 20
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.27 E-value=1.2e-10 Score=114.29 Aligned_cols=189 Identities=15% Similarity=0.154 Sum_probs=118.4
Q ss_pred CEEEEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHH
Q 016006 19 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 95 (397)
Q Consensus 19 kvavviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~ 95 (397)
.+.+||||||.||||. ...||.|+|| .||++++++++.+.. .+ |.-++....+..+.
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV---~gkPiI~~vl~~l~~---------------~G--i~~ivivv~~~~~~ 62 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA---------------AG--IKEIVLVTHASKNA 62 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEecCChHH
Confidence 4678999999999998 5789999999 899999999988873 12 22355556678889
Q ss_pred HHHHHhhcCCC------------------CCC-CCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCc
Q 016006 96 TRKYFEGHKYF------------------GLE-SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSK 156 (397)
Q Consensus 96 t~~~~~~~~~f------------------gl~-~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg 156 (397)
+.+||.....+ +.+ ..++.+..| ..|.|+||.......
T Consensus 63 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~q---------------------~~~lGtg~Av~~a~~-- 119 (297)
T TIGR01105 63 VENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQ---------------------AQPLGLGHSILCARP-- 119 (297)
T ss_pred HHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEeeC---------------------CCcCchHHHHHHHHH--
Confidence 99999652100 000 012444333 358999998776532
Q ss_pred hHHHHHHCCceEEEEEcCCCccccc-------ccc-ccchhhhccCCcEEEEEeecCCCCcccceEEEe---CCCCc-eE
Q 016006 157 LLEDMATRGIKYIDCYGVDNALVRV-------ADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR---GKGGP-LT 224 (397)
Q Consensus 157 ~l~~l~~~G~eyv~v~~vDN~l~~~-------~Dp-~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~---~~~g~-~~ 224 (397)
+. +-+.++++++|++. .. .|. .++-+|.+.++.+.+-...... ..+.|++..+ +.+|+ ..
T Consensus 120 ----~l--~~~~flvv~gD~l~-~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~-~~~yGvv~~~~~~d~~g~v~~ 191 (297)
T TIGR01105 120 ----VV--GDNPFVVVLPDIII-DDATADPLRYNLAAMIARFNETGRSQVLAKRMPGD-LSEYSVIQTKEPLDREGKVSR 191 (297)
T ss_pred ----Hh--CCCCEEEEECCeec-cccccccchhHHHHHHHHHHHhCCcEEEEEEcCCC-CccceEEEecccccCCCCeee
Confidence 22 22456777899864 21 111 3566666566655332222223 3566888763 12454 36
Q ss_pred EEEeccCChhhhhhccCCCCceeeeccceeeeEeehHHHHHH
Q 016006 225 VVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 266 (397)
Q Consensus 225 vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~~l~~L~~~ 266 (397)
|+|+.|-|..-. ....+..|+++|+|+.+.++.+
T Consensus 192 I~~~~EKP~~~~--------~~~s~~~~~GiYi~~~~i~~~l 225 (297)
T TIGR01105 192 IVEFIEKPDQPQ--------TLDSDLMAVGRYVLSADIWAEL 225 (297)
T ss_pred EeEEEECCCCcc--------cCCcCEEEEEEEEECHHHHHHH
Confidence 788887653210 1112457999999999877644
No 21
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.23 E-value=2.5e-10 Score=116.68 Aligned_cols=203 Identities=14% Similarity=0.219 Sum_probs=126.8
Q ss_pred CCEEEEEecCCCCCcCC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccch
Q 016006 18 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 93 (397)
Q Consensus 18 gkvavviLaGG~GTRLg---~~~PKg~~~i~l~~~k-sll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~ 93 (397)
.++.+|+||||.||||. .+.||.|+|+ .|| +++++.++.+.. .+ |--+++...+..
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv---~gk~plI~~~L~~l~~---------------~G--i~~i~iv~~~~~ 63 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPF---GGSYRLIDFVLSNLVN---------------SG--YLRIYVLTQYKS 63 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCcccceee---CCcceEhHHHHHHHHH---------------CC--CCEEEEEeccCH
Confidence 48899999999999999 8899999999 888 999999888763 12 223555567889
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEc
Q 016006 94 DATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 173 (397)
Q Consensus 94 ~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~ 173 (397)
+.+.++|.+. |++....+.++... |.-. ..-...|.|+||.+.... +.+....-++++|.+
T Consensus 64 ~~i~~~~~~~--~~~~~~~~~~~~~~--~~~~----------~~~~~~~lGta~al~~a~-----~~i~~~~~~~~lv~~ 124 (407)
T PRK00844 64 HSLDRHISQT--WRLSGLLGNYITPV--PAQQ----------RLGKRWYLGSADAIYQSL-----NLIEDEDPDYVVVFG 124 (407)
T ss_pred HHHHHHHHhC--cCccccCCCeEEEC--Cccc----------CCCCCcccCCHHHHHHHH-----HHHHhcCCCEEEEec
Confidence 9999999742 43322122222100 0000 000123789999877542 334333347899999
Q ss_pred CCCccccccccccchhhhccCCcEEEEEee--cCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeecc
Q 016006 174 VDNALVRVADPTFLGYFIDKGVSAGAKVVR--KAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWS 251 (397)
Q Consensus 174 vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~--k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~ 251 (397)
.|++. ...--.++-+|...++++++-+.+ ...+. ..|++..+ .+|+ |.++.|-|........ .......
T Consensus 125 gD~v~-~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~-~~Gvv~~d-~~g~--v~~~~eKp~~~~~~~~----~~~~~~~ 195 (407)
T PRK00844 125 ADHVY-RMDPRQMVDFHIESGAGVTVAAIRVPREEAS-AFGVIEVD-PDGR--IRGFLEKPADPPGLPD----DPDEALA 195 (407)
T ss_pred CCEEE-cCCHHHHHHHHHhcCCcEEEEEEecchHHcc-cCCEEEEC-CCCC--EEEEEECCCCcccccC----CCCCcEE
Confidence 99974 432234788888888887655432 23333 45888765 3453 5566655432110000 0011346
Q ss_pred ceeeeEeehHHHHHHhh
Q 016006 252 NVCLHMFTLDFLNQVAN 268 (397)
Q Consensus 252 Ni~~~~~~l~~L~~~~~ 268 (397)
|+++++|+.++|.++++
T Consensus 196 ~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 196 SMGNYVFTTDALVDALR 212 (407)
T ss_pred EeEEEEEeHHHHHHHHH
Confidence 88999999999866554
No 22
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.21 E-value=2e-10 Score=108.48 Aligned_cols=184 Identities=17% Similarity=0.250 Sum_probs=128.9
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~k-sll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
.||||||.||||. ...||.|+|+ .|+ +++++.++.+.. .++. -.++.+..+..+.+.
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i---~g~~pli~~~l~~l~~---------------~g~~-~ii~V~~~~~~~~i~ 62 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPI---GGKYPLIDYVLENLAN---------------AGIK-EIIVVVNGYKEEQIE 62 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEE---TTEEEHHHHHHHHHHH---------------TTCS-EEEEEEETTTHHHHH
T ss_pred EEEECCCCCccCchhhhcccccccee---cCCCcchhhhhhhhcc---------------cCCc-eEEEEEeeccccccc
Confidence 5788999999997 6789999998 788 999999998874 1222 126666777888999
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCC-ceEEEEEcCCC
Q 016006 98 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG-IKYIDCYGVDN 176 (397)
Q Consensus 98 ~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G-~eyv~v~~vDN 176 (397)
+++++...+++ +|.+..|+ .|.|+|+....... .+.... -++++|+++|+
T Consensus 63 ~~~~~~~~~~~---~i~~i~~~---------------------~~~Gta~al~~a~~-----~i~~~~~~~~~lv~~gD~ 113 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIVQP---------------------EPLGTAGALLQALD-----FIEEEDDDEDFLVLNGDI 113 (248)
T ss_dssp HHHTTSGGGTE---EEEEEEES---------------------SSSCHHHHHHHTHH-----HHTTSEE-SEEEEETTEE
T ss_pred ccccccccccc---cceeeecc---------------------cccchhHHHHHHHH-----HhhhccccceEEEEeccc
Confidence 99998655653 46666555 35699998887633 232221 24699999999
Q ss_pred ccccccccccchhhhccCCc--EEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeecccee
Q 016006 177 ALVRVADPTFLGYFIDKGVS--AGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 254 (397)
Q Consensus 177 ~l~~~~Dp~~lg~~~~~~~~--~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~ 254 (397)
+. ...-..++-.|...+.+ +.+..++.. ...+.|++..+ .+| .|+++-|-|..... ....|++
T Consensus 114 i~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~v~~d-~~~--~V~~~~EKP~~~~~----------~~~~~~G 178 (248)
T PF00483_consen 114 IF-DDDLQDMLEFHRESNADGTVTLLVVPVE-DPSRYGVVEVD-EDG--RVIRIVEKPDNPNA----------SNLINTG 178 (248)
T ss_dssp EE-STTHHHHHHHHHHHSSCESEEEEEEESS-GGGGSEEEEEE-TTS--EEEEEEESCSSHSH----------SSEEEEE
T ss_pred cc-cchhhhHHHhhhcccccccccccccccc-ccccceeeeec-cce--eEEEEeccCccccc----------ceeccCc
Confidence 85 44334488888888884 445455544 45566887776 345 67777776553210 1346888
Q ss_pred eeEeehHHHHHHhh
Q 016006 255 LHMFTLDFLNQVAN 268 (397)
Q Consensus 255 ~~~~~l~~L~~~~~ 268 (397)
+++|+-+.+..+++
T Consensus 179 ~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 179 IYIFKPEIFDFLLE 192 (248)
T ss_dssp EEEEETHHHHHHHH
T ss_pred eEEEcchHHHHHhh
Confidence 99999999988754
No 23
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.21 E-value=9.2e-10 Score=113.50 Aligned_cols=177 Identities=20% Similarity=0.212 Sum_probs=115.2
Q ss_pred EEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHHH
Q 016006 21 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 100 (397)
Q Consensus 21 avviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~~ 100 (397)
.+|+||||.||||+...||.++|+ .||+++++.++.+.. . .-. .+|.++ +..+.+.+++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v---~gkpli~~~l~~l~~---~------------~~~--i~vv~~-~~~~~i~~~~ 60 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKI---SGKPMINWVIDTAKK---V------------AQK--VGVVLG-HEAELVKKLL 60 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEE---CCeeHHHHHHHHHHh---c------------CCc--EEEEeC-CCHHHHHHhc
Confidence 479999999999998899999998 899999999887763 1 111 244444 4456676666
Q ss_pred hhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcccc
Q 016006 101 EGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 180 (397)
Q Consensus 101 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l~~ 180 (397)
.. .+.++.|+ .|.|.++.+..... .+. .-+++++.+.|+++..
T Consensus 61 ~~---------~~~~~~~~---------------------~~~g~~~ai~~a~~-----~l~--~~~~vlv~~gD~p~i~ 103 (448)
T PRK14357 61 PE---------WVKIFLQE---------------------EQLGTAHAVMCARD-----FIE--PGDDLLILYGDVPLIS 103 (448)
T ss_pred cc---------ccEEEecC---------------------CCCChHHHHHHHHH-----hcC--cCCeEEEEeCCcccCC
Confidence 42 23344343 35687777665422 221 2478999999998644
Q ss_pred cccc-ccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEee
Q 016006 181 VADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFT 259 (397)
Q Consensus 181 ~~Dp-~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~~ 259 (397)
..|. .++..+.+.++++++-+.+..+|.. .|++..+ +|+..++|....+... ...+..|+++++|+
T Consensus 104 ~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~-~g~v~~d--~g~v~~~e~~~~~~~~----------~~~~~~~~GiYv~~ 170 (448)
T PRK14357 104 ENTLKRLIEEHNRKGADVTILVADLEDPTG-YGRIIRD--GGKYRIVEDKDAPEEE----------KKIKEINTGIYVFS 170 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEcCCCCC-cEEEEEc--CCeEEEEECCCCChHH----------hcCcEEEeEEEEEE
Confidence 4442 2667777778888877766655543 4776554 5655566654322211 00123688999999
Q ss_pred hHHHHHHhh
Q 016006 260 LDFLNQVAN 268 (397)
Q Consensus 260 l~~L~~~~~ 268 (397)
.+.|.++++
T Consensus 171 ~~~l~~~~~ 179 (448)
T PRK14357 171 GDFLLEVLP 179 (448)
T ss_pred HHHHHHHHH
Confidence 998877654
No 24
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.7e-10 Score=113.70 Aligned_cols=180 Identities=21% Similarity=0.334 Sum_probs=130.5
Q ss_pred EEEEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHH
Q 016006 20 LAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 96 (397)
Q Consensus 20 vavviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t 96 (397)
+-+|+||||.||||. .+.||.|+|| .+|++++++++.+.+ .+ +--++++..+..+.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI---~gkPii~~~l~~L~~---------------~G--v~eivi~~~y~~~~i 61 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPI---AGKPLIEYVLEALAA---------------AG--VEEIVLVVGYLGEQI 61 (358)
T ss_pred ceEEEEeCCccccccccccCCCccccee---CCccHHHHHHHHHHH---------------CC--CcEEEEEeccchHHH
Confidence 458999999999997 6889999999 799999999998863 23 335777799999999
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCC
Q 016006 97 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 176 (397)
Q Consensus 97 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN 176 (397)
+++|.+...+|+ +|.+..|. .|.|+||.++...+ .+ +.+-+++.|+|+
T Consensus 62 ~~~~~d~~~~~~---~I~y~~e~---------------------~~lGTag~l~~a~~-----~l---~~~~f~v~~GDv 109 (358)
T COG1208 62 EEYFGDGEGLGV---RITYVVEK---------------------EPLGTAGALKNALD-----LL---GGDDFLVLNGDV 109 (358)
T ss_pred HHHHhcccccCC---ceEEEecC---------------------CcCccHHHHHHHHH-----hc---CCCcEEEEECCe
Confidence 999998655665 46655444 49999999998633 22 227899999999
Q ss_pred ccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeee
Q 016006 177 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 256 (397)
Q Consensus 177 ~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~ 256 (397)
+. ...--.++.+|.++++..++-.++...+ ..-|++.... ++ -.|.++.|-|.. . .. . -+..|++++
T Consensus 110 ~~-~~dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~~~~-~~-~~v~~f~ekp~~-~-~~---~----~~~in~Giy 176 (358)
T COG1208 110 LT-DLDLSELLEFHKKKGALATIALTRVLDP-SEFGVVETDD-GD-GRVVEFREKPGP-E-EP---P----SNLINAGIY 176 (358)
T ss_pred ee-ccCHHHHHHHHHhccCccEEEEEecCCC-CcCceEEecC-CC-ceEEEEEecCCC-C-CC---C----CceEEeEEE
Confidence 84 3222338888888877777766666656 4567777652 22 357888877632 1 00 0 034688999
Q ss_pred EeehHHHH
Q 016006 257 MFTLDFLN 264 (397)
Q Consensus 257 ~~~l~~L~ 264 (397)
+|+.+.++
T Consensus 177 i~~~~v~~ 184 (358)
T COG1208 177 IFDPEVFD 184 (358)
T ss_pred EECHHHhh
Confidence 99999886
No 25
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.19 E-value=4.3e-10 Score=104.98 Aligned_cols=160 Identities=15% Similarity=0.162 Sum_probs=103.6
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||+ ...||+|+|| .|++++++.++.+.+ .++. .++|.|. +..+.+++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi---~g~piI~~~l~~l~~---------------~Gi~-~I~iv~~-~~~~~i~~ 62 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPL---ANVPLIDYTLEFLAL---------------NGVE-EVFVFCC-SHSDQIKE 62 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEE---CCEehHHHHHHHHHH---------------CCCC-eEEEEeC-CCHHHHHH
Confidence 6999999999998 5789999999 899999999888773 1221 2355555 57889999
Q ss_pred HHhhcCCCCCCC--CcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCC
Q 016006 99 YFEGHKYFGLES--DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 176 (397)
Q Consensus 99 ~~~~~~~fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN 176 (397)
+|++...+++.. ..+.+..|. .+.|.|++++.+...+.+ .+++.+.++|+
T Consensus 63 ~l~~~~~~~~~~~~~~i~~~~~~---------------------~~~~~~~al~~~~~~~~~-------~~~flv~~gD~ 114 (217)
T cd04197 63 YIEKSKWSKPKSSLMIVIIIMSE---------------------DCRSLGDALRDLDAKGLI-------RGDFILVSGDV 114 (217)
T ss_pred HHhhccccccccCcceEEEEeCC---------------------CcCccchHHHHHhhcccc-------CCCEEEEeCCe
Confidence 998865555432 123332221 367788888766443221 25678999999
Q ss_pred cccccccc-ccchhhhc-----cCCcEEEEEeecCCCCc-----ccceEEEeCCCCceEEEEeccCCh
Q 016006 177 ALVRVADP-TFLGYFID-----KGVSAGAKVVRKAYPQE-----KVGVFVRRGKGGPLTVVEYSELDP 233 (397)
Q Consensus 177 ~l~~~~Dp-~~lg~~~~-----~~~~~~~kv~~k~~p~e-----~vGvl~~~~~~g~~~vvEy~el~~ 233 (397)
+. . .|. .++.+|.+ .++++++-+.+...+.. .-|++..+.++| +|+.+.|-|.
T Consensus 115 i~-~-~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~--~v~~~~ekp~ 178 (217)
T cd04197 115 VS-N-IDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTS--RLLHYEELPG 178 (217)
T ss_pred ee-c-cCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCC--cEEEEecccC
Confidence 84 3 344 37888876 37777765544433321 236766653234 4566666543
No 26
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.19 E-value=7.4e-10 Score=105.96 Aligned_cols=184 Identities=16% Similarity=0.285 Sum_probs=119.0
Q ss_pred EEEecCC--CCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHH
Q 016006 22 VLLLSGG--QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 96 (397)
Q Consensus 22 vviLaGG--~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t 96 (397)
+|||||| .||||.. ..||.|+|+ .|++++++.++.+..+ .+ +.-+++...+..+.+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv---~g~plI~~~l~~l~~~--------------~g--i~~i~iv~~~~~~~i 61 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV---AGKPMIHHHIEACAKV--------------PD--LKEVLLIGFYPESVF 61 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeE---CCeeHHHHHHHHHHhc--------------CC--CcEEEEEecCCHHHH
Confidence 3789999 8999985 889999999 8999999988877621 02 223455566688899
Q ss_pred HHHHhhcC-CCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCC
Q 016006 97 RKYFEGHK-YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 175 (397)
Q Consensus 97 ~~~~~~~~-~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vD 175 (397)
.+++.+.. .+|+ .|.+..| ..|.|+|+....... .+....-++++|.+.|
T Consensus 62 ~~~l~~~~~~~~~---~i~~~~~---------------------~~~~Gt~~al~~a~~-----~l~~~~~~~~lv~~gD 112 (257)
T cd06428 62 SDFISDAQQEFNV---PIRYLQE---------------------YKPLGTAGGLYHFRD-----QILAGNPSAFFVLNAD 112 (257)
T ss_pred HHHHHhcccccCc---eEEEecC---------------------CccCCcHHHHHHHHH-----HhhccCCCCEEEEcCC
Confidence 99997632 2333 2333322 247899988766432 2322234789999999
Q ss_pred CccccccccccchhhhccCCcEEEEEeecC-CCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeecccee
Q 016006 176 NALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 254 (397)
Q Consensus 176 N~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~-~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~ 254 (397)
++. ...--.++.+|.++++++++-+.+.. ......|++..+.++| .|.++.|-|... .+ +..|++
T Consensus 113 ~~~-~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g--~v~~~~Ekp~~~-------~~----~~~~~G 178 (257)
T cd06428 113 VCC-DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG--EVLHYVEKPETF-------VS----DLINCG 178 (257)
T ss_pred eec-CCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCC--eEEEEEeCCCCc-------cc----ceEEEE
Confidence 983 43223478888888888876554431 1234458876642245 455666544321 00 247899
Q ss_pred eeEeehHHHHHHh
Q 016006 255 LHMFTLDFLNQVA 267 (397)
Q Consensus 255 ~~~~~l~~L~~~~ 267 (397)
+++|+.+.++.+.
T Consensus 179 iyi~~~~~~~~i~ 191 (257)
T cd06428 179 VYLFSPEIFDTIK 191 (257)
T ss_pred EEEECHHHHHHHh
Confidence 9999999886553
No 27
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.18 E-value=5.8e-10 Score=105.46 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=115.7
Q ss_pred EEEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 21 AVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 21 avviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
.+|+||||.||||+. ..||.++|+ .+++++++.++.+.+ .++. .+++.++....+.+.
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv---~~~pli~~~l~~l~~---------------~gi~-~i~vv~~~~~~~~~~ 62 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPV---YDKPMIYYPLSTLML---------------AGIR-EILIISTPEDLPLFK 62 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEE---CCEEhHHHHHHHHHH---------------CCCC-EEEEEeCcchHHHHH
Confidence 479999999999985 789999999 589999998887763 1221 235556666668889
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCc
Q 016006 98 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 177 (397)
Q Consensus 98 ~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~ 177 (397)
+++.....+++. |.+..| ..|.|+|+.+..... .+ . -+.+++++.|++
T Consensus 63 ~~l~~~~~~~~~---i~~~~~---------------------~~~~G~~~al~~a~~-----~~-~--~~~~lv~~gD~~ 110 (240)
T cd02538 63 ELLGDGSDLGIR---ITYAVQ---------------------PKPGGLAQAFIIGEE-----FI-G--DDPVCLILGDNI 110 (240)
T ss_pred HHHhcccccCce---EEEeeC---------------------CCCCCHHHHHHHHHH-----hc-C--CCCEEEEECCEE
Confidence 999765556542 333222 246788887764322 12 1 255778899998
Q ss_pred cccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeE
Q 016006 178 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 257 (397)
Q Consensus 178 l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~ 257 (397)
+....--.++-+|.+++.++++-+.+..+| +..|++..+ .+| .|+++.|-|... .. +..|+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d-~~g--~v~~~~ekp~~~---------~~--~~~~~Giyi 175 (240)
T cd02538 111 FYGQGLSPILQRAAAQKEGATVFGYEVNDP-ERYGVVEFD-ENG--RVLSIEEKPKKP---------KS--NYAVTGLYF 175 (240)
T ss_pred EccHHHHHHHHHHHhcCCCcEEEEEECCch-hcCceEEec-CCC--cEEEEEECCCCC---------CC--CeEEEEEEE
Confidence 633212236666766777777655554444 456887765 355 456666643321 01 236888999
Q ss_pred eehHHHHH
Q 016006 258 FTLDFLNQ 265 (397)
Q Consensus 258 ~~l~~L~~ 265 (397)
|+.++++.
T Consensus 176 ~~~~~l~~ 183 (240)
T cd02538 176 YDNDVFEI 183 (240)
T ss_pred ECHHHHHH
Confidence 99987743
No 28
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.15 E-value=1.5e-09 Score=101.98 Aligned_cols=178 Identities=22% Similarity=0.324 Sum_probs=115.4
Q ss_pred EEEEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHH
Q 016006 20 LAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 96 (397)
Q Consensus 20 vavviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t 96 (397)
+.+|+||||.||||+ ...||.++|+ .|++++++.++.+.+ .++. .++|.|+. ..+.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i---~g~~li~~~l~~l~~---------------~~~~-~i~vv~~~-~~~~~ 60 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV---AGKPIIQYAIEDLRE---------------AGIE-DIGIVVGP-TGEEI 60 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEE---CCcchHHHHHHHHHH---------------CCCC-EEEEEcCC-CHHHH
Confidence 358999999999997 5789999999 799999998888763 1221 23566665 78889
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCC
Q 016006 97 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 176 (397)
Q Consensus 97 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN 176 (397)
.+++++...+++ ++.+..|+ .|.|+|+.+..-.. .+ . + +.+.+.+.|+
T Consensus 61 ~~~~~~~~~~~~---~i~~~~~~---------------------~~~g~~~sl~~a~~-----~i-~-~-~~~li~~~D~ 108 (236)
T cd04189 61 KEALGDGSRFGV---RITYILQE---------------------EPLGLAHAVLAARD-----FL-G-D-EPFVVYLGDN 108 (236)
T ss_pred HHHhcchhhcCC---eEEEEECC---------------------CCCChHHHHHHHHH-----hc-C-C-CCEEEEECCe
Confidence 999987555554 34443332 36788776664322 22 1 2 3456678899
Q ss_pred ccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeee
Q 016006 177 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 256 (397)
Q Consensus 177 ~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~ 256 (397)
++ ...--.++-.|...++++++-+.+..++ .+.|++..+ +| .|+++.+-|... . ....|++++
T Consensus 109 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~d--~~--~v~~~~ek~~~~---------~--~~~~~~Giy 171 (236)
T cd04189 109 LI-QEGISPLVRDFLEEDADASILLAEVEDP-RRFGVAVVD--DG--RIVRLVEKPKEP---------P--SNLALVGVY 171 (236)
T ss_pred ec-CcCHHHHHHHHHhcCCceEEEEEECCCc-ccceEEEEc--CC--eEEEEEECCCCC---------C--CCEEEEEEE
Confidence 85 3322235566677788888777665544 345776654 44 566766543221 1 123688999
Q ss_pred EeehHHHHHH
Q 016006 257 MFTLDFLNQV 266 (397)
Q Consensus 257 ~~~l~~L~~~ 266 (397)
+|+.++++.+
T Consensus 172 ~~~~~~~~~l 181 (236)
T cd04189 172 AFTPAIFDAI 181 (236)
T ss_pred EeCHHHHHHH
Confidence 9998877544
No 29
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.15 E-value=9.2e-10 Score=103.65 Aligned_cols=180 Identities=19% Similarity=0.285 Sum_probs=118.6
Q ss_pred EEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||+. ..||.++|+ .|++++++.++.+.. .+ +.-++.+..+.++.+++
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~---------------~g--~~~v~iv~~~~~~~~~~ 62 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVEF---CNKPMIEHQIEALAK---------------AG--VKEIILAVNYRPEDMVP 62 (233)
T ss_pred EEEecCCCccccCccccCCCCccCeE---CCcchHHHHHHHHHH---------------CC--CcEEEEEeeeCHHHHHH
Confidence 68999999999974 789999999 789999999888763 12 22233344566788899
Q ss_pred HHhhcC-CCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCc
Q 016006 99 YFEGHK-YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 177 (397)
Q Consensus 99 ~~~~~~-~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~ 177 (397)
++.+.. .+|+ ++.+.. ...|.|+|+.+..... .+ ...-+-++|++.|++
T Consensus 63 ~l~~~~~~~~~---~i~~~~---------------------~~~~~G~~~al~~a~~-----~~-~~~~~~~lv~~~D~~ 112 (233)
T cd06425 63 FLKEYEKKLGI---KITFSI---------------------ETEPLGTAGPLALARD-----LL-GDDDEPFFVLNSDVI 112 (233)
T ss_pred HHhcccccCCe---EEEecc---------------------CCCCCccHHHHHHHHH-----Hh-ccCCCCEEEEeCCEe
Confidence 997521 1332 122111 2247898887765432 22 221244788899987
Q ss_pred cccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeE
Q 016006 178 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 257 (397)
Q Consensus 178 l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~ 257 (397)
. ...-..++.+|.+.++++++-+.+..++ .+.|++..+..+| .|+++.|-|.... -+..|+++++
T Consensus 113 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~--~v~~~~ekp~~~~-----------~~~~~~Giyi 177 (233)
T cd06425 113 C-DFPLAELLDFHKKHGAEGTILVTKVEDP-SKYGVVVHDENTG--RIERFVEKPKVFV-----------GNKINAGIYI 177 (233)
T ss_pred e-CCCHHHHHHHHHHcCCCEEEEEEEcCCc-cccCeEEEcCCCC--EEEEEEECCCCCC-----------CCEEEEEEEE
Confidence 4 4333458888888899988877766543 4668887652134 5778876544311 1236889999
Q ss_pred eehHHHHHH
Q 016006 258 FTLDFLNQV 266 (397)
Q Consensus 258 ~~l~~L~~~ 266 (397)
|+.+.++.+
T Consensus 178 ~~~~~l~~l 186 (233)
T cd06425 178 LNPSVLDRI 186 (233)
T ss_pred ECHHHHHhc
Confidence 999988654
No 30
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.15 E-value=1.8e-09 Score=111.37 Aligned_cols=248 Identities=17% Similarity=0.129 Sum_probs=142.6
Q ss_pred EEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHH
Q 016006 20 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 99 (397)
Q Consensus 20 vavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~ 99 (397)
+++|+||||.||||+...||.|+|+ .|++++++.++.+.+ .+.. ..+|.+. +..+.+.++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~---------------~g~~-~iivvv~-~~~~~i~~~ 61 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL---GGKSLVERVLDSCEE---------------LKPD-RRLVIVG-HQAEEVEQS 61 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE---CChhHHHHHHHHHHh---------------CCCC-eEEEEEC-CCHHHHHHH
Confidence 6789999999999998899999998 899999999888763 1211 2344444 455677777
Q ss_pred HhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCccc
Q 016006 100 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 179 (397)
Q Consensus 100 ~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l~ 179 (397)
++++. .+.+..|. .+.|+++.+.... +.+. ..-++++|++.|.++.
T Consensus 62 ~~~~~-------~i~~v~~~---------------------~~~G~~~sv~~~~-----~~l~-~~~~~vlV~~~D~P~i 107 (450)
T PRK14360 62 LAHLP-------GLEFVEQQ---------------------PQLGTGHAVQQLL-----PVLK-GFEGDLLVLNGDVPLL 107 (450)
T ss_pred hcccC-------CeEEEEeC---------------------CcCCcHHHHHHHH-----HHhh-ccCCcEEEEeCCcccc
Confidence 76421 24443332 2567776655432 2232 1235689999999864
Q ss_pred cccccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 180 RVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 180 ~~~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
...+.. ++..+.+.++++.+-+.+..+|.. .|.+..+ ++|+ |+++.|-+....... .+ +..|+++++|
T Consensus 108 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~-~g~~~~d-~~g~--v~~~~ek~~~~~~~~---~~----~~~~~Giy~f 176 (450)
T PRK14360 108 RPETLEALLNTHRSSNADVTLLTARLPNPKG-YGRVFCD-GNNL--VEQIVEDRDCTPAQR---QN----NRINAGIYCF 176 (450)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEecCCCCC-ccEEEEC-CCCC--EEEEEECCCCChhHh---cC----cEEEEEEEEE
Confidence 332222 455566667777654445444544 4766544 3553 455554432211100 11 2368889999
Q ss_pred ehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccCCceeEEEEecCccccccccCCCCCCCCHHHHH
Q 016006 259 TLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSAR 338 (397)
Q Consensus 259 ~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~~~~~~~~v~R~~~FsPvKn~~~~~~dsp~ta~ 338 (397)
+.+.+.++++... +.+.+-|.++.|+++...+...+.+.-..+..-+.+. +..+.|+
T Consensus 177 ~~~~l~~~~~~~~------------------~~~~~~e~~~td~i~~~~~~~~~~v~~~~~~~~i~~~-----~dl~~~~ 233 (450)
T PRK14360 177 NWPALAEVLPKLS------------------SNNDQKEYYLTDTVSLLDPVMAVEVEDYQEINGINDR-----KQLAQCE 233 (450)
T ss_pred EHHHHHHHHhhcc------------------ccccCCceeHHHHHHHHhhceEEecCCHHHhhcCCCH-----HHHHHHH
Confidence 9988887764321 0012345566676665544444444322122222221 4456666
Q ss_pred HHHHHHHHHHHHHcCce
Q 016006 339 LLVLRLHTRWVIAAGGF 355 (397)
Q Consensus 339 ~~l~~~~~~~l~~~g~~ 355 (397)
+.|....++++...|..
T Consensus 234 ~~l~~~~~~~~~d~~~~ 250 (450)
T PRK14360 234 EILQNRIKEKWMLAGVT 250 (450)
T ss_pred HHHHHHHHHHHHhcCcE
Confidence 66666555555666655
No 31
>PRK10122 GalU regulator GalF; Provisional
Probab=99.15 E-value=1.5e-09 Score=106.60 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=118.1
Q ss_pred CEEEEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHH
Q 016006 19 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 95 (397)
Q Consensus 19 kvavviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~ 95 (397)
++.+||||||.||||. ...||.|+|| .||+++++.++.+.. .++ --+++...+..+.
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi---~gkpiI~~~l~~l~~---------------~Gi--~~i~iv~~~~~~~ 62 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA---------------AGI--KEIVLVTHASKNA 62 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CCC--CEEEEEcCCChHH
Confidence 6789999999999998 5789999999 899999999988873 122 2244445678899
Q ss_pred HHHHHhhcCCCCCC---------------------CCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhh
Q 016006 96 TRKYFEGHKYFGLE---------------------SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKS 154 (397)
Q Consensus 96 t~~~~~~~~~fgl~---------------------~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~ 154 (397)
+.++|.. .++++ ..++.+..|. .|.|+|+.+.....
T Consensus 63 i~~~~~~--~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q~---------------------~~lGtg~al~~a~~ 119 (297)
T PRK10122 63 VENHFDT--SYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQG---------------------QPLGLGHSILCARP 119 (297)
T ss_pred HHHHHhc--chhHHHHHhhcchhhhHHhhhhccCCCceEEEeecC---------------------CcCchHHHHHHHHH
Confidence 9999963 22221 0123333332 58999998876533
Q ss_pred CchHHHHHHCCceEEEEEcCCCccccc-------ccc-ccchhhhccCCcEEEEEeecCCCCcccceEEEeC---CCCc-
Q 016006 155 SKLLEDMATRGIKYIDCYGVDNALVRV-------ADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG---KGGP- 222 (397)
Q Consensus 155 sg~l~~l~~~G~eyv~v~~vDN~l~~~-------~Dp-~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~---~~g~- 222 (397)
.+ +-+.+++++.|++. .. .|. .++.+|.+.++++.+-......+ .+.|++..++ .+|.
T Consensus 120 -----~l---~~~~fvvi~gD~l~-~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~-~~yGvv~~d~~~~~~g~v 189 (297)
T PRK10122 120 -----AI---GDNPFVVVLPDVVI-DDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDL-SEYSVIQTKEPLDREGKV 189 (297)
T ss_pred -----Hc---CCCCEEEEECCeec-cCccccccchhHHHHHHHHHHhCCcEEEEEECCCCC-CCceEEEecCcccCCCCe
Confidence 22 22335666799974 31 122 26677777777754332222233 4568887641 2443
Q ss_pred eEEEEeccCChhhhhhccCCCCceeeeccceeeeEeehHHHHHH
Q 016006 223 LTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 266 (397)
Q Consensus 223 ~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~~l~~L~~~ 266 (397)
.+|+++.|-|..-. ...-+..|+++|+|+.+.++.+
T Consensus 190 ~~I~~~~EKp~~~~--------~~~s~~~~~GiYi~~~~i~~~l 225 (297)
T PRK10122 190 SRIVEFIEKPDQPQ--------TLDSDLMAVGRYVLSADIWPEL 225 (297)
T ss_pred eeEEEEEECCCCcc--------cCCccEEEEEEEEECHHHHHHH
Confidence 36788877653210 1111347999999999877665
No 32
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.14 E-value=5.3e-09 Score=109.25 Aligned_cols=177 Identities=19% Similarity=0.193 Sum_probs=112.4
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
++.+|+||||.||||+...||.|+|+ .|++++++.++.+.+ .++ .-+++...+..+.+++
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi---~gkpli~~~l~~l~~---------------~gi--~~ivvv~~~~~~~i~~ 66 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPV---AGRPMVAWAVKAARD---------------LGA--RKIVVVTGHGAEQVEA 66 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEE---CCeeHHHHHHHHHHh---------------CCC--CeEEEEeCCCHHHHHH
Confidence 67899999999999998889999998 899999999888763 121 2234445566778888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
+++. . .+.+..|+ .|.|.|+.+.... +.+ ...-+.++|.+.|+++
T Consensus 67 ~~~~---~-----~i~~v~~~---------------------~~~Gt~~al~~~~-----~~l-~~~~~~~lV~~gD~P~ 111 (481)
T PRK14358 67 ALQG---S-----GVAFARQE---------------------QQLGTGDAFLSGA-----SAL-TEGDADILVLYGDTPL 111 (481)
T ss_pred Hhcc---C-----CcEEecCC---------------------CcCCcHHHHHHHH-----HHh-hCCCCcEEEEeCCeec
Confidence 8852 1 24443332 3678888766432 223 2222347889999986
Q ss_pred cccccc-ccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeE
Q 016006 179 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 257 (397)
Q Consensus 179 ~~~~Dp-~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~ 257 (397)
....+. .++.++.+.++++++-+.+..++. +.|++..+ ++|+ |.++.|-|+....+ ...+..|+++|+
T Consensus 112 i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~-~yG~v~~d-~~g~--v~~~~Ek~~~~~~~-------~~~~~~n~Giyi 180 (481)
T PRK14358 112 LRPDTLRALVADHRAQGSAMTILTGELPDAT-GYGRIVRG-ADGA--VERIVEQKDATDAE-------KAIGEFNSGVYV 180 (481)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEEEcCCCC-CceEEEEC-CCCC--EEEEEECCCCChhH-------hhCCeEEEEEEE
Confidence 544333 256677777887766555444343 46888775 3553 45665543321110 001235889999
Q ss_pred eehH
Q 016006 258 FTLD 261 (397)
Q Consensus 258 ~~l~ 261 (397)
|+.+
T Consensus 181 ~~~~ 184 (481)
T PRK14358 181 FDAR 184 (481)
T ss_pred EchH
Confidence 9954
No 33
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.12 E-value=1.9e-09 Score=100.52 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=114.2
Q ss_pred EEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||+. ..||.++|+ .|++++++.++.+.+ .+ +.-+++...+..+.+.+
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi---~g~~li~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~~ 61 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV---AGKPLIDHALDRLAA---------------AG--IRRIVVNTHHLADQIEA 61 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEccCCHHHHHH
Confidence 58999999999974 789999999 799999999988873 12 33355566788999999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.. .++|+ +|.+..|. ..+.|+|+.+..... .+ +-++++|.+.|++.
T Consensus 62 ~~~~-~~~~~---~i~~~~~~--------------------~~~~g~~~~l~~~~~-----~~---~~~~~lv~~~D~i~ 109 (221)
T cd06422 62 HLGD-SRFGL---RITISDEP--------------------DELLETGGGIKKALP-----LL---GDEPFLVVNGDILW 109 (221)
T ss_pred HHhc-ccCCc---eEEEecCC--------------------CcccccHHHHHHHHH-----hc---CCCCEEEEeCCeee
Confidence 9986 45554 23332111 136688776654322 22 22789999999985
Q ss_pred ccccccccchhhh--ccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeee
Q 016006 179 VRVADPTFLGYFI--DKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 256 (397)
Q Consensus 179 ~~~~Dp~~lg~~~--~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~ 256 (397)
...--.++-.|. ..++.+++.+++...+ ...|++..+ .+| .|.++.+-++. +..|++++
T Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d-~~~--~v~~~~~~~~~--------------~~~~~Giy 170 (221)
T cd06422 110 -DGDLAPLLLLHAWRMDALLLLLPLVRNPGH-NGVGDFSLD-ADG--RLRRGGGGAVA--------------PFTFTGIQ 170 (221)
T ss_pred -CCCHHHHHHHHHhccCCCceEEEEEEcCCC-CCcceEEEC-CCC--cEeecccCCCC--------------ceEEEEEE
Confidence 432233555665 4566676666555433 344777665 345 35565443211 23688899
Q ss_pred EeehHHHHHH
Q 016006 257 MFTLDFLNQV 266 (397)
Q Consensus 257 ~~~l~~L~~~ 266 (397)
+|+.+.+.++
T Consensus 171 i~~~~~l~~l 180 (221)
T cd06422 171 ILSPELFAGI 180 (221)
T ss_pred EEcHHHHhhC
Confidence 9998887654
No 34
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.12 E-value=1.7e-09 Score=103.66 Aligned_cols=191 Identities=19% Similarity=0.268 Sum_probs=118.4
Q ss_pred EEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||+. ..||.|+|+ .|++++++.++.+.+ .+ |.-+++...+..+.+.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv---~g~pii~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~~ 61 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI---GGKPILWHIMKIYSH---------------HG--INDFIICCGYKGYVIKE 61 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEcCCCHHHHHH
Confidence 58899999999974 489999999 899999987777652 12 44466667788999999
Q ss_pred HHhhcCCCCCCCCcEEEE-EcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCc
Q 016006 99 YFEGHKYFGLESDQVTFF-QQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 177 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f-~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~ 177 (397)
+|.+...++. ++.+. +++.+.....+.+.. .-.......|.|+||.+....+ .+ +-++++|.+.|++
T Consensus 62 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gt~~al~~~~~-----~i---~~e~flv~~gD~i 129 (254)
T TIGR02623 62 YFANYFLHMS---DVTFHMADNTMEVHHKRVEPW-RVTLVDTGESTQTGGRLKRVRE-----YL---DDEAFCFTYGDGV 129 (254)
T ss_pred HHHhhhhccc---CeeEEecccccccccccCCcc-ceeeeecCCcCCcHHHHHHHHH-----hc---CCCeEEEEeCCeE
Confidence 9976332221 22222 222222221111000 0000112357999998876533 12 2467889999997
Q ss_pred cccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeE
Q 016006 178 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 257 (397)
Q Consensus 178 l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~ 257 (397)
. ...--.++-+|.+.++++++-++. .+ +..|++..+ ++ .|.++.|-|.. .+ +..|+++++
T Consensus 130 ~-~~dl~~~~~~h~~~~~d~tl~~~~--~~-~~yG~v~~d--~~--~V~~~~Ekp~~--------~~----~~i~~Giyi 189 (254)
T TIGR02623 130 A-DIDIKALIAFHRKHGKKATVTAVQ--PP-GRFGALDLE--GE--QVTSFQEKPLG--------DG----GWINGGFFV 189 (254)
T ss_pred e-cCCHHHHHHHHHHcCCCEEEEEec--CC-CcccEEEEC--CC--eEEEEEeCCCC--------CC----CeEEEEEEE
Confidence 4 433334778888888888765442 23 456887764 45 45666664321 01 246899999
Q ss_pred eehHHHH
Q 016006 258 FTLDFLN 264 (397)
Q Consensus 258 ~~l~~L~ 264 (397)
|+.+.++
T Consensus 190 ~~~~il~ 196 (254)
T TIGR02623 190 LNPSVLD 196 (254)
T ss_pred EcHHHHh
Confidence 9988773
No 35
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.09 E-value=3.1e-09 Score=110.96 Aligned_cols=187 Identities=17% Similarity=0.161 Sum_probs=116.1
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
.+++|+||||.||||+.+.||.|+|+ .++|++++.++++.+ .+. -.++|.++ +..+.+.+
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi---~gkpli~~~l~~l~~---------------~g~-~~iivvv~-~~~~~i~~ 63 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTL---AGRSMLGHVLHAAAG---------------LAP-QHLVVVVG-HDRERVAP 63 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceecee---CCccHHHHHHHHHHh---------------cCC-CcEEEEEC-CCHHHHHH
Confidence 57889999999999998899999998 799999999998863 121 13355554 45677888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
+++.. +. .+.+..|+ .|.|+|+.+.+.. +.+....-++++|+++|+++
T Consensus 64 ~~~~~---~~---~~~~~~~~---------------------~~~Gt~~si~~al-----~~l~~~~~~~vlV~~gD~P~ 111 (482)
T PRK14352 64 AVAEL---AP---EVDIAVQD---------------------EQPGTGHAVQCAL-----EALPADFDGTVVVTAGDVPL 111 (482)
T ss_pred Hhhcc---CC---ccEEEeCC---------------------CCCCcHHHHHHHH-----HHhccCCCCeEEEEeCCeec
Confidence 88642 11 23333332 3678777554432 22322234689999999986
Q ss_pred ccccccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeE
Q 016006 179 VRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 257 (397)
Q Consensus 179 ~~~~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~ 257 (397)
....+.. ++-.+...++++.+-+.+..+|. ..|.+..+ ++|+ |.++.|-+....+ ++.....|+++++
T Consensus 112 ~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~-~yg~~~~~-~~g~--V~~~~EKp~~~~~-------~~~~~~~~~Giy~ 180 (482)
T PRK14352 112 LDGETLADLVATHTAEGNAVTVLTTTLDDPT-GYGRILRD-QDGE--VTAIVEQKDATPS-------QRAIREVNSGVYA 180 (482)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEeecCCCC-CCCEEEEC-CCCC--EEEEEECCCCCHH-------HhhcceEEEEEEE
Confidence 4433332 45555556666655444444443 45766654 3564 4455443332111 1112336889999
Q ss_pred eehHHHHHHhh
Q 016006 258 FTLDFLNQVAN 268 (397)
Q Consensus 258 ~~l~~L~~~~~ 268 (397)
|+.+.|.+++.
T Consensus 181 f~~~~l~~~~~ 191 (482)
T PRK14352 181 FDAAVLRSALA 191 (482)
T ss_pred EEHHHHHHHHH
Confidence 99999887664
No 36
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.08 E-value=4.6e-09 Score=102.07 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=138.2
Q ss_pred CCEEEEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchH
Q 016006 18 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 94 (397)
Q Consensus 18 gkvavviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~ 94 (397)
..|+.++|-||.||||. ...||++.|+ ..|+++.++++.+.+ .++. .+++.|+....+
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpf---gn~pmI~hqieal~n---------------sGi~-~I~la~~y~s~s 68 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPF---GNKPMILHQIEALIN---------------SGIT-KIVLATQYNSES 68 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCccccc---CcchhhHHHHHHHHh---------------CCCc-EEEEEEecCcHH
Confidence 47899999999999996 8889999888 489999999988773 2332 347777776555
Q ss_pred HHHHHHhhcC-CCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEc
Q 016006 95 ATRKYFEGHK-YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 173 (397)
Q Consensus 95 ~t~~~~~~~~-~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~ 173 (397)
..+.+.+.+. .||+ .|.+-.|. -|.|+.|-..+.++. |.... + .-+||.|
T Consensus 69 l~~~~~k~y~~~lgV---ei~~s~et---------------------eplgtaGpl~laR~~--L~~~~--~-~~ffVLn 119 (371)
T KOG1322|consen 69 LNRHLSKAYGKELGV---EILASTET---------------------EPLGTAGPLALARDF--LWVFE--D-APFFVLN 119 (371)
T ss_pred HHHHHHHHhhhccce---EEEEEecc---------------------CCCcccchHHHHHHH--hhhcC--C-CcEEEec
Confidence 6666665542 3442 34443333 299999998887652 21111 1 1689999
Q ss_pred CCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccce
Q 016006 174 VDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNV 253 (397)
Q Consensus 174 vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni 253 (397)
.|-+ ++..--.|+-+|.+++++.++.|++-..| .+.|++.-+...| +|..+.|-|+++.. +..|+
T Consensus 120 sDvi-~~~p~~~~vqfH~~~gae~TI~~t~vdep-SkyGvv~~d~~~g--rV~~F~EKPkd~vs-----------nkina 184 (371)
T KOG1322|consen 120 SDVI-CRMPYKEMVQFHRAHGAEITIVVTKVDEP-SKYGVVVIDEDTG--RVIRFVEKPKDLVS-----------NKINA 184 (371)
T ss_pred CCee-ecCCHHHHHHHHHhcCCceEEEEEeccCc-cccceEEEecCCC--ceeEehhCchhhhh-----------ccccc
Confidence 9998 68766679999999999999999887764 5568888773234 67999999986543 34689
Q ss_pred eeeEeehHHHHHHh
Q 016006 254 CLHMFTLDFLNQVA 267 (397)
Q Consensus 254 ~~~~~~l~~L~~~~ 267 (397)
++|+|+.+.|.++.
T Consensus 185 GiYi~~~~vL~ri~ 198 (371)
T KOG1322|consen 185 GIYILNPEVLDRIL 198 (371)
T ss_pred eEEEECHHHHhHhh
Confidence 99999999999876
No 37
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.08 E-value=4.3e-09 Score=108.32 Aligned_cols=200 Identities=13% Similarity=0.212 Sum_probs=125.5
Q ss_pred CEEEEEecCCCCCcCCC---CCCCccccccCCCCCC-hHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchH
Q 016006 19 KLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKS-LFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 94 (397)
Q Consensus 19 kvavviLaGG~GTRLg~---~~PKg~~~i~l~~~ks-ll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~ 94 (397)
++.+||||||.||||.. ..||.|+|+ .|++ ++++.++.+.+ .++ .-+++...+..+
T Consensus 15 ~~~aVILAaG~GtRl~pLT~~~PK~llpv---~gkp~lI~~~l~~l~~---------------~Gi--~~i~vv~~~~~~ 74 (425)
T PRK00725 15 DTLALILAGGRGSRLKELTDKRAKPAVYF---GGKFRIIDFALSNCIN---------------SGI--RRIGVLTQYKAH 74 (425)
T ss_pred ceEEEEECCCCCCcchhhhCCCcceeEEE---CCEEEEhHHHHHHHHH---------------CCC--CeEEEEecCCHH
Confidence 78999999999999985 789999999 8896 99999888763 122 223444457889
Q ss_pred HHHHHHhhcCCCCCCC----CcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEE
Q 016006 95 ATRKYFEGHKYFGLES----DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYID 170 (397)
Q Consensus 95 ~t~~~~~~~~~fgl~~----~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~ 170 (397)
.+.++|.+. +++.+ ..+.++.+. ........|.|+|+.+.... +.+....-++++
T Consensus 75 ~i~~~~~~~--~~~~~~~~~~~i~i~~~~--------------~~~~~e~~~lGTa~al~~a~-----~~l~~~~~d~~l 133 (425)
T PRK00725 75 SLIRHIQRG--WSFFREELGEFVDLLPAQ--------------QRVDEENWYRGTADAVYQNL-----DIIRRYDPKYVV 133 (425)
T ss_pred HHHHHHHhh--hcccccCCCCeEEEeCCc--------------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEE
Confidence 999999752 33311 112222111 00112345799999877653 334333347899
Q ss_pred EEcCCCccccccccccchhhhccCCcEEEEEeec--CCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceee
Q 016006 171 CYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRF 248 (397)
Q Consensus 171 v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k--~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f 248 (397)
|.+.|++. ...--.++-+|.+.++++++-+.+. ..+ ...|++..+ ++| .|.++.|-|..-.. . + .....
T Consensus 134 Vl~gD~l~-~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~-~~yG~v~~d-~~~--~V~~~~EKp~~~~~-~-~--~~~~~ 204 (425)
T PRK00725 134 ILAGDHIY-KMDYSRMLADHVESGADCTVACLEVPREEA-SAFGVMAVD-END--RITAFVEKPANPPA-M-P--GDPDK 204 (425)
T ss_pred EecCCeEe-ccCHHHHHHHHHHcCCCEEEEEEecchhhc-ccceEEEEC-CCC--CEEEEEECCCCccc-c-c--cCccc
Confidence 99999974 4322347788888888887665432 223 345888775 245 35566654432100 0 0 01112
Q ss_pred eccceeeeEeehHHHHHHhh
Q 016006 249 CWSNVCLHMFTLDFLNQVAN 268 (397)
Q Consensus 249 ~~~Ni~~~~~~l~~L~~~~~ 268 (397)
+..|+++++|+.++|.+++.
T Consensus 205 ~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 205 SLASMGIYVFNADYLYELLE 224 (425)
T ss_pred eEEEeeEEEEeHHHHHHHHH
Confidence 34789999999999877654
No 38
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.07 E-value=4.2e-09 Score=97.82 Aligned_cols=172 Identities=19% Similarity=0.364 Sum_probs=112.0
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||+ ...||.++|+ .|++++++.++++.. .+ +.-+++...+..+.+++
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~---~g~pli~~~l~~l~~---------------~~--~~~iivv~~~~~~~i~~ 60 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKV---GGKPILETIIDRFIA---------------QG--FRNFYISVNYLAEMIED 60 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeE---CCcchHHHHHHHHHH---------------CC--CcEEEEECccCHHHHHH
Confidence 5899999999997 4789999999 899999999888763 12 22344455566788889
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.+...+++ ++.+..|+ .|.|+|+.+..+.. ..-+.++|.+.|++.
T Consensus 61 ~~~~~~~~~~---~i~~~~~~---------------------~~~g~~~~l~~~~~---------~~~~~~lv~~~D~i~ 107 (220)
T cd06426 61 YFGDGSKFGV---NISYVRED---------------------KPLGTAGALSLLPE---------KPTDPFLVMNGDILT 107 (220)
T ss_pred HHCCccccCc---cEEEEECC---------------------CCCcchHHHHHHHh---------hCCCCEEEEcCCEee
Confidence 9876433443 34433222 36788888765432 124778999999864
Q ss_pred ccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 179 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 179 ~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
...--.++-.+...+.++++-+.+.. +....|++..+ +| .|+++.+-+.. + +..|+++++|
T Consensus 108 -~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~d--~~--~v~~~~ek~~~---------~----~~~~~Giy~~ 168 (220)
T cd06426 108 -NLNYEHLLDFHKENNADATVCVREYE-VQVPYGVVETE--GG--RITSIEEKPTH---------S----FLVNAGIYVL 168 (220)
T ss_pred -ccCHHHHHHHHHhcCCCEEEEEEEcC-CCCcceEEEEC--CC--EEEEEEECCCC---------C----CeEEEEEEEE
Confidence 33223366666677788877665543 44455665543 34 56676653211 1 1257889999
Q ss_pred ehHHHHH
Q 016006 259 TLDFLNQ 265 (397)
Q Consensus 259 ~l~~L~~ 265 (397)
+.++++.
T Consensus 169 ~~~~~~~ 175 (220)
T cd06426 169 EPEVLDL 175 (220)
T ss_pred cHHHHhh
Confidence 9887754
No 39
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.07 E-value=4.3e-09 Score=97.31 Aligned_cols=177 Identities=19% Similarity=0.288 Sum_probs=112.1
Q ss_pred EEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||+||||+. ..||.++|+ .|+|++++.++.+.. .+ +.-++++.++..+.+.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i---~g~pli~~~l~~l~~---------------~g--~~~v~vv~~~~~~~i~~ 60 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV---AGRPFLEYLLEYLAR---------------QG--ISRIVLSVGYLAEQIEE 60 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE---CCcchHHHHHHHHHH---------------CC--CCEEEEEcccCHHHHHH
Confidence 48999999999974 679999999 799999999888763 12 22344555667788899
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.....++. ++.+..| ..+.|+++.+.... +.+ +-+++++.+.|+++
T Consensus 61 ~~~~~~~~~~---~~~~~~~---------------------~~~~G~~~~l~~a~-----~~~---~~~~~lv~~~D~~~ 108 (223)
T cd06915 61 YFGDGYRGGI---RIYYVIE---------------------PEPLGTGGAIKNAL-----PKL---PEDQFLVLNGDTYF 108 (223)
T ss_pred HHcCccccCc---eEEEEEC---------------------CCCCcchHHHHHHH-----hhc---CCCCEEEEECCccc
Confidence 9875322332 2322211 23678776554432 222 24789999999975
Q ss_pred ccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 179 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 179 ~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
...--.++-.+.+.+.++++-+.+...+ ...|++..+ ++| .|+++.+-+... .....|+++++|
T Consensus 109 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~v~~d-~~~--~v~~~~ek~~~~-----------~~~~~~~Giy~~ 172 (223)
T cd06915 109 -DVDLLALLAALRASGADATMALRRVPDA-SRYGNVTVD-GDG--RVIAFVEKGPGA-----------APGLINGGVYLL 172 (223)
T ss_pred -CCCHHHHHHHHHhCCCcEEEEEEECCCC-CcceeEEEC-CCC--eEEEEEeCCCCC-----------CCCcEEEEEEEE
Confidence 3221225555666778888777665443 345666443 345 456666543221 112358889999
Q ss_pred ehHHHHHH
Q 016006 259 TLDFLNQV 266 (397)
Q Consensus 259 ~l~~L~~~ 266 (397)
+.++++++
T Consensus 173 ~~~~l~~~ 180 (223)
T cd06915 173 RKEILAEI 180 (223)
T ss_pred CHHHHhhC
Confidence 99998654
No 40
>PLN02917 CMP-KDO synthetase
Probab=99.07 E-value=4.1e-09 Score=103.32 Aligned_cols=223 Identities=14% Similarity=0.137 Sum_probs=126.7
Q ss_pred CCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 18 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 18 gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
.++.+|++|+|.++||+ +|.++++ .|+|++++.++++... .. +..++.. ...+.+.
T Consensus 46 ~~i~aIIpA~G~SsR~~---~K~L~~i---~GkPLL~~vi~~a~~~--------------~~--~~~VVV~--~~~e~I~ 101 (293)
T PLN02917 46 SRVVGIIPARFASSRFE---GKPLVHI---LGKPMIQRTWERAKLA--------------TT--LDHIVVA--TDDERIA 101 (293)
T ss_pred CcEEEEEecCCCCCCCC---CCCeeeE---CCEEHHHHHHHHHHcC--------------CC--CCEEEEE--CChHHHH
Confidence 37889999999999996 5999998 8999999999987631 11 1223333 3467888
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCc
Q 016006 98 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 177 (397)
Q Consensus 98 ~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~ 177 (397)
+++.+ +|. .+..|. ...+.|+|.+..++ +.+ +...+++++.++|.+
T Consensus 102 ~~~~~---~~v-----~vi~~~-------------------~~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~P 147 (293)
T PLN02917 102 ECCRG---FGA-----DVIMTS-------------------ESCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEP 147 (293)
T ss_pred HHHHH---cCC-----EEEeCC-------------------cccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcC
Confidence 88864 232 222222 12367888876554 223 234679999999999
Q ss_pred cccccccc-cchhhhccCCcEEE--EEe--ecCCCCcccceEEEeCCCCceEEEEec-c-CChhhhhhccCCCCceeeec
Q 016006 178 LVRVADPT-FLGYFIDKGVSAGA--KVV--RKAYPQEKVGVFVRRGKGGPLTVVEYS-E-LDPSLASAINQETGRLRFCW 250 (397)
Q Consensus 178 l~~~~Dp~-~lg~~~~~~~~~~~--kv~--~k~~p~e~vGvl~~~~~~g~~~vvEy~-e-l~~~~~~~~~~~~g~~~f~~ 250 (397)
|....+.. ++..+. .+.++.+ -+. ...+|..++.++|..+++|+ ++.++ . ++.+- .. + ..+.....
T Consensus 148 lI~~~tI~~li~~~~-~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~--alyfsr~~Ipe~k-d~-~--~~~~~i~~ 220 (293)
T PLN02917 148 LIEPEIIDGVVKALQ-AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGY--AIYFSRGLIPYNK-SG-K--VNPQFPYL 220 (293)
T ss_pred CCCHHHHHHHHHHHH-hcCCceEEEEeeecCHHHhcCCCceEEEECCCCe--EEEeecCcCCcCC-Cc-c--cccccceE
Confidence 85433222 223222 2333322 222 33456666566544434564 23333 2 22211 00 0 01111234
Q ss_pred cceeeeEeehHHHHHHhhccccCccceeeccccCCCCCCcchhhhhHHHhhhcccCCc--eeEEEEecCccccccccC
Q 016006 251 SNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPS--TALFEVLREEEFAPVKNA 326 (397)
Q Consensus 251 ~Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~~~~~~~klE~fi~D~~~~~~~--~~~~~v~R~~~FsPvKn~ 326 (397)
-|++++.|+.++|..+ ..+. ++-.+.|.++.|+.-+.+. ..++.++ +++..|++.
T Consensus 221 ~n~Giy~f~~~~L~~l-~~l~------------------~~n~e~e~yLtdl~~le~G~~i~~~~~~--~~~~GVnt~ 277 (293)
T PLN02917 221 LHLGIQSYDAKFLKIY-PELP------------------PTPLQLEEDLEQLKVLENGYKMKVIKVD--HEAHGVDTP 277 (293)
T ss_pred EEEEEEEeCHHHHHHH-HcCC------------------CCcccchhccHHHHHHhCCCceEEEEeC--CCCCCCCCH
Confidence 6999999999999844 3211 1125667777777744333 3344443 467777554
No 41
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.07 E-value=9.6e-09 Score=95.85 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=111.6
Q ss_pred EEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHHHh
Q 016006 22 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 101 (397)
Q Consensus 22 vviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~~~ 101 (397)
+|+||||.||||+...||.++|+ .|++++++.++.+.. .++. ..+|.|+. .++.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v---~gkpli~~~i~~l~~---------------~~i~-~i~iv~~~-~~~~i~~~~~ 60 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVLDAARA---------------LGPD-RIVVVVGH-GAEQVKKALA 60 (229)
T ss_pred CEEEeCCCCccCCCCCChhccee---CCccHHHHHHHHHHh---------------CCCC-eEEEEECC-CHHHHHHHhC
Confidence 48999999999998889999998 899999998888763 1211 23555544 4788888886
Q ss_pred hcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCccccc
Q 016006 102 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 181 (397)
Q Consensus 102 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l~~~ 181 (397)
+ + .+.++.|. .+.|.++...... +.+ +.+.+++++.+.|+++...
T Consensus 61 ~---~-----~~~~~~~~---------------------~~~g~~~ai~~a~-----~~~-~~~~~~vli~~~D~p~~~~ 105 (229)
T cd02540 61 N---P-----NVEFVLQE---------------------EQLGTGHAVKQAL-----PAL-KDFEGDVLVLYGDVPLITP 105 (229)
T ss_pred C---C-----CcEEEECC---------------------CCCCCHHHHHHHH-----Hhh-ccCCCeEEEEeCCccccCH
Confidence 4 2 23444332 2457776655432 222 2236889999999986432
Q ss_pred cccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEeeh
Q 016006 182 ADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTL 260 (397)
Q Consensus 182 ~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~~l 260 (397)
.+.. ++-.+.+.++++++-+.+..+|. ..|.+..+ .+|+ |+++.+-+..... +-.....|+++++|+.
T Consensus 106 ~~i~~l~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~-~~~~--v~~~~ek~~~~~~-------~~~~~~~~~giy~~~~ 174 (229)
T cd02540 106 ETLQRLLEAHREAGADVTVLTAELEDPT-GYGRIIRD-GNGK--VLRIVEEKDATEE-------EKAIREVNAGIYAFDA 174 (229)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEcCCCC-CccEEEEc-CCCC--EEEEEECCCCChH-------HHhhceEEeEEEEEEH
Confidence 2221 34555555677776666666563 45665554 3453 4555543321000 0001246888999998
Q ss_pred HHHHHHhh
Q 016006 261 DFLNQVAN 268 (397)
Q Consensus 261 ~~L~~~~~ 268 (397)
+.+.+.++
T Consensus 175 ~~~~~~l~ 182 (229)
T cd02540 175 EFLFEALP 182 (229)
T ss_pred HHHHHHHH
Confidence 87766554
No 42
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.06 E-value=2.6e-09 Score=110.26 Aligned_cols=214 Identities=17% Similarity=0.255 Sum_probs=128.6
Q ss_pred CCEEEEEecCCCCCcCC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccch
Q 016006 18 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 93 (397)
Q Consensus 18 gkvavviLaGG~GTRLg---~~~PKg~~~i~l~~~k-sll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~ 93 (397)
.++.+|+||||.||||. ...||.|+|+ .|+ +++++.++.+.. .+ |.-+++...+..
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv---~g~~plId~~L~~l~~---------------~G--i~~i~iv~~~~~ 61 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPI---GGNYRLIDIPMSNCIN---------------SG--INKIYVLTQFNS 61 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEe---CCcceEehHHHHHHHh---------------CC--CCEEEEEeccCH
Confidence 37889999999999998 6889999998 775 999998888763 12 233455566788
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEc
Q 016006 94 DATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 173 (397)
Q Consensus 94 ~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~ 173 (397)
+.+.++|++...|+.... +.++.+..+.. .+. ..-...|.|+||.+..... .+++...++-+++++.+
T Consensus 62 ~~i~~~l~~~~~~~~~~~----~~~~~~~i~~~-----~q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~ 129 (436)
T PLN02241 62 ASLNRHLSRAYNFGNGGN----FGDGFVEVLAA-----TQT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILS 129 (436)
T ss_pred HHHHHHHhccCCCCCCcc----cCCCCEEEcCC-----ccc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEec
Confidence 999999985322442211 01110000000 000 0001258999998866532 12221111258999999
Q ss_pred CCCccccccccccchhhhccCCcEEEEEeecC--CCCcccceEEEeCCCCceEEEEeccCChhhhh---hc-------cC
Q 016006 174 VDNALVRVADPTFLGYFIDKGVSAGAKVVRKA--YPQEKVGVFVRRGKGGPLTVVEYSELDPSLAS---AI-------NQ 241 (397)
Q Consensus 174 vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~--~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~---~~-------~~ 241 (397)
.|++ ....--.++-+|.++++++++-+.+.. .+ +..|++..+ .+| +|++|.|.|..... .+ ++
T Consensus 130 gD~v-~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~-~~ygvv~~d-~~~--~v~~~~Ekp~~~~~~~~~~~~~~~~~~~ 204 (436)
T PLN02241 130 GDHL-YRMDYMDFVQKHRESGADITIACLPVDESRA-SDFGLMKID-DTG--RIIEFSEKPKGDELKAMQVDTTVLGLSP 204 (436)
T ss_pred CCeE-EccCHHHHHHHHHHcCCCEEEEEEecchhhc-CcceEEEEC-CCC--CEEEEEECCCCccccccccccccccccc
Confidence 9997 343333478888888998876554332 23 556888774 345 46788776643110 00 00
Q ss_pred CCCceeeeccceeeeEeehHHHHHHhh
Q 016006 242 ETGRLRFCWSNVCLHMFTLDFLNQVAN 268 (397)
Q Consensus 242 ~~g~~~f~~~Ni~~~~~~l~~L~~~~~ 268 (397)
+.-+...+..|+++++|+.+.|.++++
T Consensus 205 ~~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 205 EEAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred ccccccceEEEeEEEEEEHHHHHHHHH
Confidence 000011234699999999999977654
No 43
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.05 E-value=7.2e-09 Score=106.79 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=122.6
Q ss_pred CEEEEEecCCCCCcCC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchH
Q 016006 19 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 94 (397)
Q Consensus 19 kvavviLaGG~GTRLg---~~~PKg~~~i~l~~~k-sll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~ 94 (397)
++.+|+||||.||||. .+.||.|+|+ .|+ +++++.++.+.. .+ +.-+++...+..+
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi---~gk~plI~~~L~~l~~---------------~G--i~~vivv~~~~~~ 62 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPL---AGKYRLIDIPISNCIN---------------SG--INKIYVLTQFNSA 62 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEE---CCeeEEeHHHHHHHHH---------------CC--CCEEEEEecCCHH
Confidence 7889999999999998 4889999999 888 999999887763 12 2224444556888
Q ss_pred HHHHHHhhcCCCCCCCCc-EEEE--EcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEE
Q 016006 95 ATRKYFEGHKYFGLESDQ-VTFF--QQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 171 (397)
Q Consensus 95 ~t~~~~~~~~~fgl~~~~-v~~f--~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v 171 (397)
.++++|++...++..... +.+. .|. ..-...+.|+||.+.... +.+....-++++|
T Consensus 63 ~i~~~l~~~~~~~~~~~g~~~i~~~~~~----------------~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lV 121 (429)
T PRK02862 63 SLNRHISQTYNFDGFSGGFVEVLAAQQT----------------PENPSWFQGTADAVRKYL-----WHFQEWDVDEYLI 121 (429)
T ss_pred HHHHHHhcCcCccccCCCEEEEeCCccc----------------CCCCccccCcHHHHHHHH-----HHHHhcCCCEEEE
Confidence 999999763222211001 1111 010 000112379999887653 2333333478999
Q ss_pred EcCCCccccccccccchhhhccCCcEEEEEeecC--CCCcccceEEEeCCCCceEEEEeccCChhh-hhhc---------
Q 016006 172 YGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA--YPQEKVGVFVRRGKGGPLTVVEYSELDPSL-ASAI--------- 239 (397)
Q Consensus 172 ~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~--~p~e~vGvl~~~~~~g~~~vvEy~el~~~~-~~~~--------- 239 (397)
.+.|++. ...--.++.+|.+.++++++-+.+.. .+. ..|++..+ ++| .|.++.|-|... ....
T Consensus 122 l~gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~-~yG~i~~d-~~g--~V~~~~Ekp~~~~~~~~~~~~s~~~~ 196 (429)
T PRK02862 122 LSGDQLY-RMDYRLFVQHHRETGADITLAVLPVDEKDAS-GFGLMKTD-DDG--RITEFSEKPKGDELKAMAVDTSRLGL 196 (429)
T ss_pred ecCCEEE-eCCHHHHHHHHHHcCCCEEEEEEecChhhcc-cceEEEEC-CCC--cEEEEEECCCccccchhccccccccc
Confidence 9999964 43223477888888888876554332 232 45877665 245 345565554321 0000
Q ss_pred cCCCCceeeeccceeeeEeehHHHHHHhh
Q 016006 240 NQETGRLRFCWSNVCLHMFTLDFLNQVAN 268 (397)
Q Consensus 240 ~~~~g~~~f~~~Ni~~~~~~l~~L~~~~~ 268 (397)
+++.-...-...|+++++|+.+.|.++++
T Consensus 197 ~~~~~~~~~~~~n~Giyi~~~~vl~~~l~ 225 (429)
T PRK02862 197 SPEEAKGKPYLASMGIYVFSRDVLFDLLN 225 (429)
T ss_pred ccccCCCCceEEEEEEEEEcHHHHHHHHH
Confidence 00000001123688999999999987764
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.04 E-value=6.4e-09 Score=95.91 Aligned_cols=175 Identities=21% Similarity=0.347 Sum_probs=116.1
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||+ ...||.++|+ .|++++++.++.+.. .++. ..+|.|. +..+.+.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v---~g~pli~~~l~~l~~---------------~g~~-~i~vv~~-~~~~~i~~ 60 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI---AGKPILEYIIERLAR---------------AGID-EIILVVG-YLGEQIEE 60 (217)
T ss_pred CEEecCCccccccccccCCCccccEE---CCeeHHHHHHHHHHH---------------CCCC-EEEEEec-cCHHHHHH
Confidence 4899999999998 4689999999 899999999998763 1211 1244444 46678889
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.+...+|. +|.+..|. .|.|+++.+..... .+ .-++++|.+.|++.
T Consensus 61 ~~~~~~~~~~---~i~~~~~~---------------------~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~~ 108 (217)
T cd04181 61 YFGDGSKFGV---NIEYVVQE---------------------EPLGTAGAVRNAED-----FL---GDDDFLVVNGDVLT 108 (217)
T ss_pred HHcChhhcCc---eEEEEeCC---------------------CCCccHHHHHHhhh-----hc---CCCCEEEEECCeec
Confidence 8876443443 34443222 35788777766432 22 45789999999974
Q ss_pred ccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 179 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 179 ~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
....-.++.++.++++++++-+.+.. .....|++..+ ++| .|+++.|-++.. .+ ...|+++++|
T Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~d-~~~--~v~~~~ek~~~~-------~~----~~~~~Giy~~ 172 (217)
T cd04181 109 -DLDLSELLRFHREKGADATIAVKEVE-DPSRYGVVELD-DDG--RVTRFVEKPTLP-------ES----NLANAGIYIF 172 (217)
T ss_pred -CcCHHHHHHHHHhcCCCEEEEEEEcC-CCCcceEEEEc-CCC--cEEEEEECCCCC-------CC----CEEEEEEEEE
Confidence 44334466777888888887766554 44455777664 235 456776644321 00 2358889999
Q ss_pred ehHHHH
Q 016006 259 TLDFLN 264 (397)
Q Consensus 259 ~l~~L~ 264 (397)
+.++++
T Consensus 173 ~~~~~~ 178 (217)
T cd04181 173 EPEILD 178 (217)
T ss_pred CHHHHH
Confidence 998774
No 45
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.03 E-value=4.1e-08 Score=101.85 Aligned_cols=185 Identities=19% Similarity=0.211 Sum_probs=118.4
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
++.+|+||||.||||+...||.|+|+ .+++++++.++.+.+ .++. . +++...+..+.+.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi---~g~pli~~~l~~l~~---------------~gi~-~-iiiv~~~~~~~i~~ 62 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPL---AGRPMVSWPVAAARE---------------AGAG-R-IVLVVGHQAEKVRE 62 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceecee---CCccHHHHHHHHHHh---------------cCCC-e-EEEEECCCHHHHHH
Confidence 57789999999999998899999998 789999998887763 1221 2 34444456778888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
+|.+.. .+.+..|. .|.|+|+.+.... +.+ +..-+++++.+.|+++
T Consensus 63 ~~~~~~-------~i~~~~~~---------------------~~~Gt~~al~~a~-----~~l-~~~~~~vlv~~gD~p~ 108 (459)
T PRK14355 63 HFAGDG-------DVSFALQE---------------------EQLGTGHAVACAA-----PAL-DGFSGTVLILCGDVPL 108 (459)
T ss_pred HhccCC-------ceEEEecC---------------------CCCCHHHHHHHHH-----HHh-hccCCcEEEEECCccC
Confidence 886421 34443333 3568887666542 223 2224789999999976
Q ss_pred ccccc-cccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeE
Q 016006 179 VRVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 257 (397)
Q Consensus 179 ~~~~D-p~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~ 257 (397)
....| -.++-.+...++++++-..+..+|. ..|++..+ .+|+ |+++.|-++.... +......|+++|+
T Consensus 109 ~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~-~~g~v~~d-~~g~--v~~~~ek~~~~~~-------~~~~~~~~~Giy~ 177 (459)
T PRK14355 109 LRAETLQGMLAAHRATGAAVTVLTARLENPF-GYGRIVRD-ADGR--VLRIVEEKDATPE-------ERSIREVNSGIYC 177 (459)
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEEEEcCCCC-cCCEEEEc-CCCC--EEEEEEcCCCChh-------HhhccEEEEEEEE
Confidence 44444 3366677667777776666655564 45776654 3453 4566543321100 0011246888999
Q ss_pred eehHHHHHHhh
Q 016006 258 FTLDFLNQVAN 268 (397)
Q Consensus 258 ~~l~~L~~~~~ 268 (397)
|+.+++.+.+.
T Consensus 178 ~~~~~l~~~l~ 188 (459)
T PRK14355 178 VEAAFLFDAIG 188 (459)
T ss_pred EeHHHHHHHHH
Confidence 99988766554
No 46
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=98.99 E-value=1.5e-08 Score=98.34 Aligned_cols=195 Identities=16% Similarity=0.113 Sum_probs=121.2
Q ss_pred EEEEecCCCCCcCC----CCCCCccccccCCCC-CChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHH
Q 016006 21 AVLLLSGGQGTRLG----SSDPKGCVNIGLPSG-KSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 95 (397)
Q Consensus 21 avviLaGG~GTRLg----~~~PKg~~~i~l~~~-ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~ 95 (397)
-+||||||.||||. ...||.++|+ .| +|++|+.++++..+. ++ =.++|.|+....+.
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l---~g~~~li~~~l~~l~~~~--------------~~-~~i~vvt~~~~~~~ 63 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKL---FGDKSLLQQTLDRLKGLV--------------PP-DRILVVTNEEYRFL 63 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEc---CCCCcHHHHHHHHHhcCC--------------CC-CcEEEEechHHHHH
Confidence 47999999999996 4689999887 56 999999999876310 11 13578888766677
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHH-CCceEEEEEcC
Q 016006 96 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT-RGIKYIDCYGV 174 (397)
Q Consensus 96 t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~-~G~eyv~v~~v 174 (397)
+++++++ .+ ..+.+..|+ .+.|+|+....... .+.. .+-++++|++.
T Consensus 64 v~~~l~~---~~---~~~~ii~ep---------------------~~~gTa~ai~~a~~-----~~~~~~~~~~vlVl~~ 111 (274)
T cd02509 64 VREQLPE---GL---PEENIILEP---------------------EGRNTAPAIALAAL-----YLAKRDPDAVLLVLPS 111 (274)
T ss_pred HHHHHhh---cC---CCceEEECC---------------------CCCCcHHHHHHHHH-----HHHhcCCCCeEEEecc
Confidence 8888865 11 123333222 36788887765422 2222 23578999999
Q ss_pred CCcccccccc-ccchhh---hccCCcEEEEEeecCCCCcccceEEEeCCC--CceEEEEeccCChhhhhhccCCCCceee
Q 016006 175 DNALVRVADP-TFLGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGKG--GPLTVVEYSELDPSLASAINQETGRLRF 248 (397)
Q Consensus 175 DN~l~~~~Dp-~~lg~~---~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~--g~~~vvEy~el~~~~~~~~~~~~g~~~f 248 (397)
|.++....+- ..+-.+ ++.+..+++-+.+. .|....|.+...... +...|..+.|-|+....+..-..|.+
T Consensus 112 D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~-~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~-- 188 (274)
T cd02509 112 DHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT-RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNY-- 188 (274)
T ss_pred hhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec-CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCe--
Confidence 9986321111 122222 22566777766665 466777988775211 12367788887764222110012221
Q ss_pred eccceeeeEeehHHHHHHhhc
Q 016006 249 CWSNVCLHMFTLDFLNQVANG 269 (397)
Q Consensus 249 ~~~Ni~~~~~~l~~L~~~~~~ 269 (397)
.-|.++++|+.+.+.+.++.
T Consensus 189 -~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 189 -LWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred -EEECceeeeeHHHHHHHHHH
Confidence 24888999999888777764
No 47
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.98 E-value=1.8e-08 Score=100.90 Aligned_cols=178 Identities=22% Similarity=0.291 Sum_probs=117.5
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||+ ...||.++|+ .+++++++.++.+.+ .++. .++++|+....+.+++
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv---~g~pli~~~l~~l~~---------------~gi~-~i~vv~~~~~~~~i~~ 62 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPV---ANKPILQYAIEDLAE---------------AGIT-DIGIVVGPVTGEEIKE 62 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEE---CCEeHHHHHHHHHHH---------------CCCC-EEEEEeCCCCHHHHHH
Confidence 6899999999997 4889999999 799999998887763 1221 2466777658899999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.+...|++ ++.+..|. .+.|+++.+.+..+ .+ . -+.+++.+.|+++
T Consensus 63 ~~~~~~~~~~---~~~~~~~~---------------------~~~G~~~al~~a~~-----~l-~--~~~~li~~gD~~~ 110 (353)
T TIGR01208 63 IVGEGERFGA---KITYIVQG---------------------EPLGLAHAVYTARD-----FL-G--DDDFVVYLGDNLI 110 (353)
T ss_pred HHhcccccCc---eEEEEECC---------------------CCCCHHHHHHHHHH-----hc-C--CCCEEEEECCeec
Confidence 9987555664 34444332 37888887776432 22 1 2446778899986
Q ss_pred ccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 179 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 179 ~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
...--.++-.|.++++++++-+.+..+|. ..|++... +++ .|.++.+-|... . -...|+++++|
T Consensus 111 -~~~l~~l~~~~~~~~~d~ti~~~~~~~~~-~~g~~~~~-~~~--~v~~~~ekp~~~-------~----~~~~~~Giy~~ 174 (353)
T TIGR01208 111 -QDGISRFVKSFEEKDYDALILLTKVRDPT-AFGVAVLE-DGK--RILKLVEKPKEP-------P----SNLAVVGLYMF 174 (353)
T ss_pred -CccHHHHHHHHHhcCCCcEEEEEECCChh-hCeEEEEc-CCC--cEEEEEECCCCC-------C----ccceEEEEEEE
Confidence 33223477778888888877776655553 45776654 234 345555443321 0 02358889999
Q ss_pred ehHHHHHH
Q 016006 259 TLDFLNQV 266 (397)
Q Consensus 259 ~l~~L~~~ 266 (397)
+..+++.+
T Consensus 175 ~~~l~~~l 182 (353)
T TIGR01208 175 RPLIFEAI 182 (353)
T ss_pred CHHHHHHH
Confidence 98665543
No 48
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6.1e-09 Score=99.89 Aligned_cols=244 Identities=19% Similarity=0.270 Sum_probs=157.1
Q ss_pred CEEEEEecCC--CCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccch
Q 016006 19 KLAVLLLSGG--QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 93 (397)
Q Consensus 19 kvavviLaGG--~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~ 93 (397)
++.+|+|-|| .|||.. ++.||.++|| .|.++.++++..+..+..++ -+++.-++..
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi---aG~pmI~Hhi~ac~qi~~l~----------------eI~LvGFy~e 62 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPI---AGVPMIHHHISACKQISGLA----------------EILLVGFYEE 62 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCcccc---CCcchhhhhHHHHhcccchh----------------heeEEecccc
Confidence 4566777788 799985 9999999999 89999999988877544331 2555588888
Q ss_pred HHHHHHHhhc-CCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEE
Q 016006 94 DATRKYFEGH-KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCY 172 (397)
Q Consensus 94 ~~t~~~~~~~-~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~ 172 (397)
+....|+.+- +.|.++ |.+. -+.+|.|+||-+..+++ +..+-.-..+|+.
T Consensus 63 ~~f~~fis~~~~e~~~p---vrYL---------------------~E~~plGtaGgLyhFrd-----qIl~g~ps~vFvl 113 (407)
T KOG1460|consen 63 RVFTDFISAIQQEFKVP---VRYL---------------------REDNPLGTAGGLYHFRD-----QILAGSPSAVFVL 113 (407)
T ss_pred hHHHHHHHHHHhhcccc---hhhh---------------------ccCCCCCcccceeehhh-----HHhcCCCceEEEE
Confidence 8888888652 234322 3322 24579999998888765 3445556789999
Q ss_pred cCCCccccccccccchhhhccCCcEEEEEeecC-CCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeecc
Q 016006 173 GVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWS 251 (397)
Q Consensus 173 ~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~-~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~ 251 (397)
|.|-. +...-+.++..|...+..+.+-+++-+ .....-|.++.+...| .|+-|.|-|..... ..-
T Consensus 114 naDVC-csfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~--evlHYveKPsTfvS-----------d~I 179 (407)
T KOG1460|consen 114 NADVC-CSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTG--EVLHYVEKPSTFVS-----------DII 179 (407)
T ss_pred eccee-cCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcC--ceEEeecCcchhhh-----------ccc
Confidence 99987 566667799999888888775443322 1234558888763234 57899998776543 245
Q ss_pred ceeeeEeehHHHHHHhhccccCccceeeccccCCCC-CCcchhhhhHHHhhhcccCCceeEEEEecCccccccccC
Q 016006 252 NVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIH-GQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNA 326 (397)
Q Consensus 252 Ni~~~~~~l~~L~~~~~~~~~~lp~h~a~kkip~~~-~~~~~~klE~fi~D~~~~~~~~~~~~v~R~~~FsPvKn~ 326 (397)
|.++++|+.+.++.+.+..+...-..-..|..|.++ +-.--++||+-++..+ +.+-.++...-.+=++-+|.+
T Consensus 180 nCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspL--ag~k~lY~y~t~~fW~QiKta 253 (407)
T KOG1460|consen 180 NCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPL--AGSKQLYAYETTDFWSQIKTA 253 (407)
T ss_pred ceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhh--cCCCceEEEecccHHHHhccc
Confidence 888999998887766553321100001122223222 2223488998766433 333333333333346888887
No 49
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=98.97 E-value=8.8e-09 Score=98.47 Aligned_cols=188 Identities=19% Similarity=0.181 Sum_probs=111.3
Q ss_pred EEEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 21 AVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 21 avviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
.+||||||.||||+. ..||.++|+ .|++++++.++.+.+ .++. ..+|+|. +..+.+.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi---~g~pli~~~l~~l~~---------------~gi~-~v~iv~~-~~~~~i~ 61 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYVVEEAVE---------------AGIE-DILIVTG-RGKRAIE 61 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE---CCEEHHHHHHHHHHh---------------CCCC-EEEEEeC-CcHHHHH
Confidence 479999999999974 789999999 789999998887763 1221 2344444 5678899
Q ss_pred HHHhhcCCCC-----------CC-------CCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHH
Q 016006 98 KYFEGHKYFG-----------LE-------SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLE 159 (397)
Q Consensus 98 ~~~~~~~~fg-----------l~-------~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~ 159 (397)
++|.+...++ ++ ..++.+. ....|.|+|+.+.....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---------------------~~~~~~G~~~al~~~~~----- 115 (260)
T TIGR01099 62 DHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYV---------------------RQKEQKGLGHAVLCAEP----- 115 (260)
T ss_pred HHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEE---------------------ecCCCCCHHHHHHHHHH-----
Confidence 9997421110 00 0011111 12247899987765432
Q ss_pred HHHHCCceEEEEEcCCCccccc--cccccchhhhccCCcEE-EEEeecCCCCcccceEEEeCC-CCceEEEEeccCChhh
Q 016006 160 DMATRGIKYIDCYGVDNALVRV--ADPTFLGYFIDKGVSAG-AKVVRKAYPQEKVGVFVRRGK-GGPLTVVEYSELDPSL 235 (397)
Q Consensus 160 ~l~~~G~eyv~v~~vDN~l~~~--~Dp~~lg~~~~~~~~~~-~kv~~k~~p~e~vGvl~~~~~-~g~~~vvEy~el~~~~ 235 (397)
.+ +-+.+.|++.|+++... .--.++-+|.+.++++. ...++... ....|++..+.. ++.-.|+++.|-|...
T Consensus 116 ~~---~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~-~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~ 191 (260)
T TIGR01099 116 FV---GDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEE-VSKYGVIDGEGVEEGLYEIKDMVEKPKPE 191 (260)
T ss_pred hh---CCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEECChhh-cccCceEEeccccCCceeEEEEEECCCCC
Confidence 22 34668899999996432 11236777777788752 22122222 345587766310 1112466666654310
Q ss_pred hhhccCCCCceeeeccceeeeEeehHHHHHHh
Q 016006 236 ASAINQETGRLRFCWSNVCLHMFTLDFLNQVA 267 (397)
Q Consensus 236 ~~~~~~~~g~~~f~~~Ni~~~~~~l~~L~~~~ 267 (397)
. ..+ +..|+++++|+.+.+..+.
T Consensus 192 ~-----~~~----~~~~~Giyi~~~~~~~~l~ 214 (260)
T TIGR01099 192 E-----APS----NLAIVGRYVLTPDIFDLLE 214 (260)
T ss_pred C-----CCC----ceEEEEEEECCHHHHHHHH
Confidence 0 001 2468889999998776653
No 50
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.92 E-value=2.5e-07 Score=95.72 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=108.8
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
++.+|+||||.||||+...||.++|+ .|++++++.++++.. .++ .-++.+..+..+.+.+
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~ll~i---~Gkpli~~~l~~l~~---------------~gi--~~iivvv~~~~~~i~~ 61 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVLHKV---CGKPMVEHVVDSVKK---------------AGI--DKIVTVVGHGAEEVKE 61 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhhCEe---CCccHHHHHHHHHHh---------------CCC--CeEEEEeCCCHHHHHH
Confidence 45689999999999998899999998 789999999988763 121 1233344455667777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.+. +.+..| ..+.|+++.+.... +.+ +..-+++++++.|+++
T Consensus 62 ~~~~~---------~~~~~~---------------------~~~~g~~~al~~a~-----~~l-~~~~d~vlv~~~D~p~ 105 (458)
T PRK14354 62 VLGDR---------SEFALQ---------------------EEQLGTGHAVMQAE-----EFL-ADKEGTTLVICGDTPL 105 (458)
T ss_pred HhcCC---------cEEEEc---------------------CCCCCHHHHHHHHH-----HHh-cccCCeEEEEECCccc
Confidence 76431 222111 12567766555432 223 2213689999999986
Q ss_pred ccccccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeE
Q 016006 179 VRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 257 (397)
Q Consensus 179 ~~~~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~ 257 (397)
....|.. ++-++.+.+++.++-+.+..+|. ..|++..+ ++|+ |+++.|-++.... .......|+++++
T Consensus 106 i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~-~~g~v~~d-~~~~--V~~~~ek~~~~~~-------~~~~~~~~~Giy~ 174 (458)
T PRK14354 106 ITAETLKNLIDFHEEHKAAATILTAIAENPT-GYGRIIRN-ENGE--VEKIVEQKDATEE-------EKQIKEINTGTYC 174 (458)
T ss_pred cCHHHHHHHHHHHHhcCCceEEEEEEcCCCC-CceEEEEc-CCCC--EEEEEECCCCChH-------HhcCcEEEEEEEE
Confidence 4444322 55555556677665444444443 35666544 3453 3444433321100 1112346888999
Q ss_pred eehHHHHHHhh
Q 016006 258 FTLDFLNQVAN 268 (397)
Q Consensus 258 ~~l~~L~~~~~ 268 (397)
|+.++|.+.++
T Consensus 175 f~~~~l~~~l~ 185 (458)
T PRK14354 175 FDNKALFEALK 185 (458)
T ss_pred EEHHHHHHHHH
Confidence 99987766554
No 51
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=4.3e-08 Score=93.54 Aligned_cols=176 Identities=22% Similarity=0.293 Sum_probs=123.9
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
.||||||.||||. ...||.++|| -+|+++++-++++.. | ++. -+.|.+++.+-...++
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV---~~KPmi~y~l~~L~~----a-----------GI~-dI~II~~~~~~~~~~~ 63 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPV---YDKPMIYYPLETLML----A-----------GIR-DILIVVGPEDKPTFKE 63 (286)
T ss_pred cEEecCcCccccccccccCCccccee---cCcchhHhHHHHHHH----c-----------CCc-eEEEEecCCchhhhhh
Confidence 5899999999997 8889999999 899999999998873 1 222 2377778888889999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++...+.||+ ++++-.|+ .|.|=+.++..- +++. |-+-+.++-+||++
T Consensus 64 llGdgs~~gv---~itY~~Q~---------------------~p~GlA~Av~~a------~~fv--~~~~f~l~LGDNi~ 111 (286)
T COG1209 64 LLGDGSDFGV---DITYAVQP---------------------EPDGLAHAVLIA------EDFV--GDDDFVLYLGDNIF 111 (286)
T ss_pred hhcCccccCc---ceEEEecC---------------------CCCcHHHHHHHH------Hhhc--CCCceEEEecCcee
Confidence 9998899997 58888887 699999888743 3343 55778889999998
Q ss_pred ccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 179 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 179 ~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
-. .-..++-.+.+.+.+..+-+.+-.+| ++.||+..+ ++| +++..-|-|++= +-|.+=++.++|
T Consensus 112 ~~-~l~~~~~~~~~~~~ga~i~~~~V~dP-~rfGV~e~d-~~~--~v~~l~EKP~~P-----------~SNlAvtGlY~~ 175 (286)
T COG1209 112 QD-GLSELLEHFAEEGSGATILLYEVDDP-SRYGVVEFD-EDG--KVIGLEEKPKEP-----------KSNLAVTGLYFY 175 (286)
T ss_pred cc-ChHHHHHHHhccCCCcEEEEEEcCCc-ccceEEEEc-CCC--cEEEeEECCCCC-----------CCceeEEEEEEe
Confidence 66 44446665665444444444444455 566888776 345 444444444431 114566778888
Q ss_pred ehHHHH
Q 016006 259 TLDFLN 264 (397)
Q Consensus 259 ~l~~L~ 264 (397)
+-+..+
T Consensus 176 d~~Vf~ 181 (286)
T COG1209 176 DPSVFE 181 (286)
T ss_pred ChHHHH
Confidence 875554
No 52
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=98.91 E-value=2.2e-08 Score=92.21 Aligned_cols=137 Identities=15% Similarity=0.258 Sum_probs=87.9
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~k-sll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
+|+||||.||||. .+.||.|+|+ .|+ +++++.++.+.. .++. ..+|.|+ +..+.+.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~---------------~gi~-~iivv~~-~~~~~i~ 60 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPF---GGRYRLIDFPLSNMVN---------------SGIR-NVGVLTQ-YKSRSLN 60 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEE---CCeeeeHHHHHHHHHH---------------CCCC-EEEEEeC-CChHHHH
Confidence 4899999999997 4789999999 788 999999888763 1221 2355555 5578899
Q ss_pred HHHhhcCCCCCCC--CcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCC
Q 016006 98 KYFEGHKYFGLES--DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 175 (397)
Q Consensus 98 ~~~~~~~~fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vD 175 (397)
++|.+...||++. ..+.+.... .......|.|+|+.+..... .+....-++++|.+.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD 120 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFILPPQ---------------QRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGD 120 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEeCcc---------------cCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCC
Confidence 9998766676642 123222100 00013468999998876533 3333334789999999
Q ss_pred CccccccccccchhhhccCCcEEE
Q 016006 176 NALVRVADPTFLGYFIDKGVSAGA 199 (397)
Q Consensus 176 N~l~~~~Dp~~lg~~~~~~~~~~~ 199 (397)
++. ...--.++.+|.+++.++++
T Consensus 121 ~v~-~~~~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 121 HIY-NMDYREMLDFHIESGADITV 143 (200)
T ss_pred EEE-ecCHHHHHHHHHHcCCCEEE
Confidence 963 33223366666655555543
No 53
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=98.90 E-value=3.6e-08 Score=97.15 Aligned_cols=201 Identities=15% Similarity=0.121 Sum_probs=114.3
Q ss_pred EEEEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHH
Q 016006 20 LAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 96 (397)
Q Consensus 20 vavviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t 96 (397)
+.+|+||||.||||.. ..||.++|+ .|++++++.++.+.+ .+ |--++....+..+.+
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv---~g~pii~~~l~~l~~---------------~g--i~~i~vv~~~~~~~i 68 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIA---------------AG--ITEIVLVTHSSKNSI 68 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEeCCCHHHH
Confidence 5689999999999974 789999999 899999999888763 12 223455566778999
Q ss_pred HHHHhhcCCCC--CCCC-cEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEc
Q 016006 97 RKYFEGHKYFG--LESD-QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 173 (397)
Q Consensus 97 ~~~~~~~~~fg--l~~~-~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~ 173 (397)
.++|.....++ +++. +..+ .++--... ..+.. ........|.|+|+.+..... +. +-+.++|++
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~-~~e~~~i~-~~~~~---i~~~~q~~~~Gtg~Av~~a~~------~~--~~~~~lVl~ 135 (302)
T PRK13389 69 ENHFDTSFELEAMLEKRVKRQL-LDEVQSIC-PPHVT---IMQVRQGLAKGLGHAVLCAHP------VV--GDEPVAVIL 135 (302)
T ss_pred HHHHccchhhhhhhhhhhhhHH-HHhhhhcc-ccCce---EEEeecCCCCChHHHHHHHHH------Hc--CCCCEEEEe
Confidence 99997432222 1100 0000 00000000 00000 000012458999998776432 22 235678899
Q ss_pred CCCccc------cccc-cccchhhhccCCcEEEEEeecCCCCcccceEEEeC----CCCceEEEEeccCChhhhhhccCC
Q 016006 174 VDNALV------RVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG----KGGPLTVVEYSELDPSLASAINQE 242 (397)
Q Consensus 174 vDN~l~------~~~D-p~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~----~~g~~~vvEy~el~~~~~~~~~~~ 242 (397)
.||++. ...| -.++.+|.+.+++ ++-+.+...+ ...|++..++ .+..-.|+++.|-|....
T Consensus 136 gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~~-~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~------ 207 (302)
T PRK13389 136 PDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVADV-TAYGVVDCKGVELAPGESVPMVGVVEKPKADV------ 207 (302)
T ss_pred CcceecccccccccccHHHHHHHHHhcCCC-EEEEEEcccC-CcceEEEecCcccccCCcceEEEEEECCCCCC------
Confidence 999852 1123 2477777777776 3434443333 4568887641 011124566666544210
Q ss_pred CCceeeeccceeeeEeehHHHH
Q 016006 243 TGRLRFCWSNVCLHMFTLDFLN 264 (397)
Q Consensus 243 ~g~~~f~~~Ni~~~~~~l~~L~ 264 (397)
... +..|+++|+|+.+.++
T Consensus 208 -~~s--~~~~~GiYi~~~~il~ 226 (302)
T PRK13389 208 -APS--NLAIVGRYVLSADIWP 226 (302)
T ss_pred -CCc--cEEEEEEEEECHHHHH
Confidence 011 2368999999988774
No 54
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=98.89 E-value=5.3e-08 Score=93.01 Aligned_cols=190 Identities=19% Similarity=0.250 Sum_probs=115.4
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||. ...||.|+|+ .+++++++.++.+.+ .+ +.-++....+..+.+++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv---~~~p~i~~~~~~~~~---------------~g--i~~i~iv~~~~~~~i~~ 60 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEI---GGRPILWHIMKIYSH---------------YG--HNDFILCLGYKGHVIKE 60 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEE---CCEEHHHHHHHHHHh---------------CC--CceEEEECCCCHHHHHH
Confidence 4899999999997 4789999998 899999887776652 12 33455666788899999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCcc----ccccCCCchHhHHHhhCchHHHHHHCCc-eEEEEEc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKV----AKAPDGNGGVYSALKSSKLLEDMATRGI-KYIDCYG 173 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i----~~~P~G~Ggi~~~L~~sg~l~~l~~~G~-eyv~v~~ 173 (397)
|+++...+|. ++.+-.|..--.+..+ ..+++.+ ...|.|+||.+....+ .+ +. +++++++
T Consensus 61 ~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~t~~al~~a~~-----~~---~~~~~~lv~~ 125 (253)
T cd02524 61 YFLNYFLHNS---DVTIDLGTNRIELHNS----DIEDWKVTLVDTGLNTMTGGRLKRVRR-----YL---GDDETFMLTY 125 (253)
T ss_pred HHHhhhhhcC---ceeEeecccceeeecc----cccccceeecccCcccccHHHHHHHHH-----hc---CCCCeEEEEc
Confidence 9987543442 2222211100000000 0011111 1237788887665432 12 22 7999999
Q ss_pred CCCccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccce
Q 016006 174 VDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNV 253 (397)
Q Consensus 174 vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni 253 (397)
.|++. ...--.++-+|...++++++.++. +....|++..+ .+| .|.++.+-+.. .+ ...|+
T Consensus 126 gD~i~-~~dl~~ll~~h~~~~~~~tl~~~~---~~~~~g~v~~d-~~g--~V~~~~ekp~~--------~~----~~i~~ 186 (253)
T cd02524 126 GDGVS-DVNINALIEFHRSHGKLATVTAVH---PPGRFGELDLD-DDG--QVTSFTEKPQG--------DG----GWING 186 (253)
T ss_pred CCEEE-CCCHHHHHHHHHHcCCCEEEEEec---CCCcccEEEEC-CCC--CEEEEEECCCC--------CC----ceEEE
Confidence 99985 332244677777788888765553 33456887665 345 44566554321 00 13577
Q ss_pred eeeEeehHHHHH
Q 016006 254 CLHMFTLDFLNQ 265 (397)
Q Consensus 254 ~~~~~~l~~L~~ 265 (397)
++++|+.+.++.
T Consensus 187 Giyi~~~~l~~~ 198 (253)
T cd02524 187 GFFVLEPEVFDY 198 (253)
T ss_pred EEEEECHHHHHh
Confidence 889999887644
No 55
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=98.88 E-value=3.4e-08 Score=92.57 Aligned_cols=175 Identities=16% Similarity=0.201 Sum_probs=106.9
Q ss_pred EEEecCCCCCcCCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg~---~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+||||||.||||+. ..||.++|+ .|++++++.++.+.. .+ +.-++++..+..+.+.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~---~g~~li~~~l~~l~~---------------~g--i~~i~vv~~~~~~~~~~ 60 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEI---NGKPLLERQIETLKE---------------AG--IDDIVIVTGYKKEQIEE 60 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeE---CCEEHHHHHHHHHHH---------------CC--CceEEEEeccCHHHHHH
Confidence 48999999999984 579999998 789999998887763 12 22234445567788888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.+. + .+.+..++ .+.+.|+++.+.+.. +.+ -++++++++|++.
T Consensus 61 ~~~~~--~-----~~~~~~~~-------------------~~~~~g~~~s~~~~~-----~~~----~~~~lv~~~D~~~ 105 (229)
T cd02523 61 LLKKY--P-----NIKFVYNP-------------------DYAETNNIYSLYLAR-----DFL----DEDFLLLEGDVVF 105 (229)
T ss_pred HHhcc--C-----CeEEEeCc-------------------chhhhCcHHHHHHHH-----HHc----CCCEEEEeCCEec
Confidence 88752 2 24433332 123677776655442 222 2789999999974
Q ss_pred ccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 179 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 179 ~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
++.++-.+.+.+.++++-+.+.. .....+..+....++ .+++..+.+.... . ....|++++.|
T Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~v~~~~~k~~~~~--------~--~~~~~~Giy~~ 168 (229)
T cd02523 106 ----DPSILERLLSSPADNAILVDKKT-KEWEDEYVKDLDDAG--VLLGIISKAKNLE--------E--IQGEYVGISKF 168 (229)
T ss_pred ----CHHHHHHHHcCCCCCeEEEccCc-ccccccceeeecCcc--ceEeecccCCCcc--------h--hceEEEeEEEE
Confidence 45677778888888776665422 122222222211112 2334433322110 0 12368889999
Q ss_pred ehHHHHHHhh
Q 016006 259 TLDFLNQVAN 268 (397)
Q Consensus 259 ~l~~L~~~~~ 268 (397)
+.+.++++.+
T Consensus 169 ~~~~~~~l~~ 178 (229)
T cd02523 169 SPEDADRLAE 178 (229)
T ss_pred CHHHHHHHHH
Confidence 9999877654
No 56
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.88 E-value=5.1e-08 Score=100.53 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=112.0
Q ss_pred CCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 18 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 18 gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
.++.+|+||||.||||+...||.++|+ .||+++++.++.+.+ .++. ..+|.+ .+..+.+.
T Consensus 4 ~~~~aiILAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~---------------~gi~-~ivvv~-~~~~~~i~ 63 (446)
T PRK14353 4 RTCLAIILAAGEGTRMKSSLPKVLHPV---AGRPMLAHVLAAAAS---------------LGPS-RVAVVV-GPGAEAVA 63 (446)
T ss_pred ccceEEEEcCCCCCccCCCCCcccCEE---CCchHHHHHHHHHHh---------------CCCC-cEEEEE-CCCHHHHH
Confidence 467899999999999998889999998 899999999988763 1211 124444 45667788
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCc
Q 016006 98 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 177 (397)
Q Consensus 98 ~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~ 177 (397)
+++.+ ++. ++.++.|+ .|.|+++...+.. +.+ ..+-+++++.+.|.+
T Consensus 64 ~~~~~---~~~---~~~~~~~~---------------------~~~G~~~sl~~a~-----~~l-~~~~~~~lv~~~D~P 110 (446)
T PRK14353 64 AAAAK---IAP---DAEIFVQK---------------------ERLGTAHAVLAAR-----EAL-AGGYGDVLVLYGDTP 110 (446)
T ss_pred HHhhc---cCC---CceEEEcC---------------------CCCCcHHHHHHHH-----HHH-hccCCCEEEEeCCcc
Confidence 88754 221 23333232 3567766555432 223 223578899999997
Q ss_pred cccccccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeee
Q 016006 178 LVRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 256 (397)
Q Consensus 178 l~~~~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~ 256 (397)
+....+.. ++. +.+.++++.+-+.+...+ .+.|++... +| .|+++.|-++....+ .. ....|++++
T Consensus 111 ~i~~~~l~~l~~-~~~~~~~~~i~~~~~~~~-~~~g~~~~~--~g--~v~~~~ek~~~~~~~-----~~--~~~~~~Giy 177 (446)
T PRK14353 111 LITAETLARLRE-RLADGADVVVLGFRAADP-TGYGRLIVK--GG--RLVAIVEEKDASDEE-----RA--ITLCNSGVM 177 (446)
T ss_pred cCCHHHHHHHHH-hHhcCCcEEEEEEEeCCC-CcceEEEEC--CC--eEEEEEECCCCChHH-----hh--ceEEEEEEE
Confidence 64332222 222 234566776666555443 355766553 55 356666544321110 00 123588899
Q ss_pred EeehHHHHHHhh
Q 016006 257 MFTLDFLNQVAN 268 (397)
Q Consensus 257 ~~~l~~L~~~~~ 268 (397)
+|+.+.+.++++
T Consensus 178 ~~~~~~l~~~l~ 189 (446)
T PRK14353 178 AADGADALALLD 189 (446)
T ss_pred EEEHHHHHHHHH
Confidence 999887765554
No 57
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.87 E-value=4.5e-08 Score=92.65 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=111.1
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
++++|+||||.++||+ +|.++|+ .|+|++++.++.+... + +.-+++.+. ++.+.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i---~Gkpll~~~l~~l~~~---------------~--i~~ivvv~~--~~~i~~ 56 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI---GGKPMIVRVYERASKA---------------G--ADRVVVATD--DERIAD 56 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc---CCcCHHHHHHHHHHhc---------------C--CCeEEEECC--cHHHHH
Confidence 5789999999999995 7999998 8999999999988731 1 222333333 477888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.+ +|. ++.+..| ..+.|++++..++.. +...+-++++++++|+++
T Consensus 57 ~~~~---~~~---~v~~~~~---------------------~~~~gt~~~~~~~~~------~~~~~~~~vlv~~~D~Pl 103 (245)
T PRK05450 57 AVEA---FGG---EVVMTSP---------------------DHPSGTDRIAEAAAK------LGLADDDIVVNVQGDEPL 103 (245)
T ss_pred HHHH---cCC---EEEECCC---------------------cCCCchHHHHHHHHh------cCCCCCCEEEEecCCCCC
Confidence 8864 342 2322111 125677776655422 211234779999999987
Q ss_pred cccccc-ccchhhhccCCcEEEEEeecCC-----CCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccc
Q 016006 179 VRVADP-TFLGYFIDKGVSAGAKVVRKAY-----PQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSN 252 (397)
Q Consensus 179 ~~~~Dp-~~lg~~~~~~~~~~~kv~~k~~-----p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~N 252 (397)
....+. .++..+..++.++.+-+++..+ ..+.+|++ .+ ++| .|+++.+.+..-..+.. +.........|
T Consensus 104 i~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d-~~g--~v~~~~e~~~~~~~~~~-~~~~~~~~~~~ 178 (245)
T PRK05450 104 IPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LD-ADG--RALYFSRAPIPYGRDAF-ADSAPTPVYRH 178 (245)
T ss_pred CCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eC-CCC--cEEEecCCCCCCCCCcc-ccccCccccEE
Confidence 543333 2444444455666655555421 23345665 43 356 34677766521000000 00011124579
Q ss_pred eeeeEeehHHHHHHhh
Q 016006 253 VCLHMFTLDFLNQVAN 268 (397)
Q Consensus 253 i~~~~~~l~~L~~~~~ 268 (397)
++++.|+.+.++.+.+
T Consensus 179 ~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 179 IGIYAYRRGFLRRFVS 194 (245)
T ss_pred EEEEecCHHHHHHHHh
Confidence 9999999999988765
No 58
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=98.85 E-value=1e-07 Score=89.85 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=107.5
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
++.+++||||.|+||+ ||.++|+ .|||++++.++++.+. .+ +.-++..+. ++.+.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i---~gkpll~~~l~~l~~~--------------~~--i~~ivvv~~--~~~i~~ 56 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI---AGKPMIQHVYERAKKA--------------KG--LDEVVVATD--DERIAD 56 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc---CCcCHHHHHHHHHHhC--------------CC--CCEEEEECC--cHHHHH
Confidence 4678999999999996 7999998 8999999999988731 02 222344443 478888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++.+ +++ .+..+. ...+.|+|++..++. .+ ....+++++.++|+++
T Consensus 57 ~~~~---~~~-----~~~~~~-------------------~~~~~gt~~~~~~~~------~~-~~~~d~vlv~~gD~Pl 102 (239)
T cd02517 57 AVES---FGG-----KVVMTS-------------------PDHPSGTDRIAEVAE------KL-DADDDIVVNVQGDEPL 102 (239)
T ss_pred HHHH---cCC-----EEEEcC-------------------cccCchhHHHHHHHH------hc-CCCCCEEEEecCCCCC
Confidence 8864 332 222121 122567787666542 22 1124789999999987
Q ss_pred ccccccc-cchhhhcc-CCcEEEEEeecCCCC--cccce--EEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccc
Q 016006 179 VRVADPT-FLGYFIDK-GVSAGAKVVRKAYPQ--EKVGV--FVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSN 252 (397)
Q Consensus 179 ~~~~Dp~-~lg~~~~~-~~~~~~kv~~k~~p~--e~vGv--l~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~N 252 (397)
....+.. ++-.+... ++++++-+++..+|. ...|. ++.+ ++| .|.++.+.+... ..++ +... -...|
T Consensus 103 i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~--~v~~~~~~~~~~--~~~~-~~~~-~~~~~ 175 (239)
T cd02517 103 IPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD-KDG--YALYFSRSPIPY--PRDS-SEDF-PYYKH 175 (239)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC-CCC--CEEEecCCCCCC--CCCC-CCCC-ceeEE
Confidence 5433322 34444334 566665555543333 12233 3333 356 355666432100 0000 0000 13479
Q ss_pred eeeeEeehHHHHHHhh
Q 016006 253 VCLHMFTLDFLNQVAN 268 (397)
Q Consensus 253 i~~~~~~l~~L~~~~~ 268 (397)
++++.|+.+.++.+.+
T Consensus 176 ~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 176 IGIYAYRRDFLLRFAA 191 (239)
T ss_pred EEEEEECHHHHHHHHh
Confidence 9999999999987654
No 59
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.85 E-value=5.2e-07 Score=92.90 Aligned_cols=179 Identities=17% Similarity=0.160 Sum_probs=104.6
Q ss_pred EEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHHH
Q 016006 21 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 100 (397)
Q Consensus 21 avviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~~ 100 (397)
-+|+||||+||||+.+.||.++|+ .|++++++.++.+.+ .++. ..+|.++ +..+.+.+++
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~g~~-~iiiv~~-~~~~~i~~~~ 61 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVIDAARA---------------LGPQ-KIHVVYG-HGAEQVRKAL 61 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhcee---CCccHHHHHHHHHHh---------------CCCC-eEEEEEC-CCHHHHHHHh
Confidence 478999999999998899999998 899999998888763 1221 2355555 4567788888
Q ss_pred hhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcccc
Q 016006 101 EGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 180 (397)
Q Consensus 101 ~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l~~ 180 (397)
.+. ++.++.|. .|.|+++.+.... +.+ + .-+++++.+.|.++..
T Consensus 62 ~~~--------~i~~~~~~---------------------~~~G~~~ai~~a~-----~~l-~-~~~~~lv~~~D~p~i~ 105 (451)
T TIGR01173 62 ANR--------DVNWVLQA---------------------EQLGTGHAVLQAL-----PFL-P-DDGDVLVLYGDVPLIS 105 (451)
T ss_pred cCC--------CcEEEEcC---------------------CCCchHHHHHHHH-----Hhc-C-CCCcEEEEECCcCCcC
Confidence 652 23333332 2457766544432 222 1 2268999999997633
Q ss_pred ccccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEee
Q 016006 181 VADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFT 259 (397)
Q Consensus 181 ~~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~~ 259 (397)
..+.. ++-.+.+. ..++-+.+..++ ...|++..+ ++|+ |.++.|-++..... . .....|+++++|+
T Consensus 106 ~~~~~~l~~~~~~~--~~~~~~~~~~~~-~~~g~v~~d-~~g~--v~~~~ek~~~~~~~------~-~~~~~~~G~y~~~ 172 (451)
T TIGR01173 106 AETLERLLEAHRQN--GITLLTAKLPDP-TGYGRIIRE-NDGK--VTAIVEDKDANAEQ------K-AIKEINTGVYVFD 172 (451)
T ss_pred HHHHHHHHHHHhhC--CEEEEEEecCCC-CCCCEEEEc-CCCC--EEEEEEcCCCChHH------h-cCcEEEEEEEEEe
Confidence 22221 23333222 343333333333 336776654 3454 45555433221100 0 0123578889999
Q ss_pred hHHHHHHhh
Q 016006 260 LDFLNQVAN 268 (397)
Q Consensus 260 l~~L~~~~~ 268 (397)
.++|.+.++
T Consensus 173 ~~~l~~~l~ 181 (451)
T TIGR01173 173 GAALKRWLP 181 (451)
T ss_pred HHHHHHHHH
Confidence 999866554
No 60
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.81 E-value=7.6e-08 Score=96.55 Aligned_cols=198 Identities=16% Similarity=0.281 Sum_probs=115.8
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~k-sll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
+|+||||.||||+ .+.||.|+|+ .|+ +++++.++.+.. .+ +.-++....+..+.+.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~ 60 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPF---GGKYRIIDFPLSNCIN---------------SG--IRRIGVLTQYKSHSLN 60 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccccee---cceeeEeeehhhhhhh---------------cC--CceEEEEeccChHHHH
Confidence 4899999999998 4689999999 888 799999888763 12 2234445556777899
Q ss_pred HHHhhcCCCCCCC---CcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcC
Q 016006 98 KYFEGHKYFGLES---DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 174 (397)
Q Consensus 98 ~~~~~~~~fgl~~---~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~v 174 (397)
++|.+ .+++.. ..+.++.+. ....-...|.|+|+.+.... +.+....-++++|+++
T Consensus 61 ~~~~~--~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~g 119 (361)
T TIGR02091 61 RHIQR--GWDFDGFIDGFVTLLPAQ--------------QRESGTDWYQGTADAVYQNL-----DLIEDYDPEYVLILSG 119 (361)
T ss_pred HHHHh--ccCccCccCCCEEEeCCc--------------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecC
Confidence 99975 344321 122222100 00001224689988776432 2232223478999999
Q ss_pred CCccccccccccchhhhccCCcEEEEEeecC-CCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccce
Q 016006 175 DNALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNV 253 (397)
Q Consensus 175 DN~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~-~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni 253 (397)
|++. ...-..++-.|..+++++.+-+.+.. ......|++..+ .+|+ |.++.|-|..-... .+.......|+
T Consensus 120 D~l~-~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d-~~~~--v~~~~ekp~~~~~~----~~~~~~~~~~~ 191 (361)
T TIGR02091 120 DHIY-KMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVD-EDGR--IVDFEEKPANPPSI----PGMPDFALASM 191 (361)
T ss_pred CEEE-cCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEEC-CCCC--EEEEEECCCCcccc----cccccccEEee
Confidence 9964 33222356666666776655443321 123456888765 2453 56676543211000 00001124689
Q ss_pred eeeEeehHHHHHHhh
Q 016006 254 CLHMFTLDFLNQVAN 268 (397)
Q Consensus 254 ~~~~~~l~~L~~~~~ 268 (397)
+++.|+.+.|.+.+.
T Consensus 192 Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 192 GIYIFDKDVLKELLE 206 (361)
T ss_pred eEEEEcHHHHHHHHH
Confidence 999999998866554
No 61
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=98.81 E-value=5.8e-08 Score=93.25 Aligned_cols=184 Identities=17% Similarity=0.187 Sum_probs=110.3
Q ss_pred EEEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 21 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 21 avviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
-+||||||.||||. ...||.++|+ .|++++++.++.+.+ .+ +.-+++...+..+.+.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv---~gkpli~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~ 61 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPVIQYIVEEAVA---------------AG--IEDIIIVTGRGKRAIE 61 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEeCCchHHHH
Confidence 37999999999997 3789999999 789999999888763 12 2224445556778899
Q ss_pred HHHhhcCCCCCC--------------------CCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCch
Q 016006 98 KYFEGHKYFGLE--------------------SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKL 157 (397)
Q Consensus 98 ~~~~~~~~fgl~--------------------~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~ 157 (397)
++|... ++++ ..++.+.. ...|.|+|+.+....+
T Consensus 62 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------------------~~~~~Gt~~al~~~~~--- 115 (267)
T cd02541 62 DHFDRS--YELEETLEKKGKTDLLEEVRIISDLANIHYVR---------------------QKEPLGLGHAVLCAKP--- 115 (267)
T ss_pred HHhCCc--HHHHHHHHhcccHHHhhhhhcccCCceEEEEE---------------------cCCCCChHHHHHHHHH---
Confidence 998642 1110 01222222 2347899888765532
Q ss_pred HHHHHHCCceEEEEEcCCCccccccc---cccchhhhccCCcEE-EEEeecCCCCcccceEEEeCCC-CceEEEEeccCC
Q 016006 158 LEDMATRGIKYIDCYGVDNALVRVAD---PTFLGYFIDKGVSAG-AKVVRKAYPQEKVGVFVRRGKG-GPLTVVEYSELD 232 (397)
Q Consensus 158 l~~l~~~G~eyv~v~~vDN~l~~~~D---p~~lg~~~~~~~~~~-~kv~~k~~p~e~vGvl~~~~~~-g~~~vvEy~el~ 232 (397)
.+ . .+.++|++.|+++ ...| -.++..|...++++. ..-++.. .....|++..+..+ +.-.|.++.|-|
T Consensus 116 --~i-~--~~~~lv~~gD~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~~v~~~~Ekp 188 (267)
T cd02541 116 --FI-G--DEPFAVLLGDDLI-DSKEPCLKQLIEAYEKTGASVIAVEEVPPE-DVSKYGIVKGEKIDGDVFKVKGLVEKP 188 (267)
T ss_pred --Hh-C--CCceEEEECCeEE-eCCchHHHHHHHHHHHhCCCEEEEEEcChh-cCccceEEEeecCCCCceEEeEEEECC
Confidence 22 2 2668899999985 3332 236677766666642 2212211 23445777665211 123466666654
Q ss_pred hhhhhhccCCCCceeeeccceeeeEeehHHHHHH
Q 016006 233 PSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 266 (397)
Q Consensus 233 ~~~~~~~~~~~g~~~f~~~Ni~~~~~~l~~L~~~ 266 (397)
.... ..+ ...|+++++|+.+.+..+
T Consensus 189 ~~~~-----~~~----~~~~~Giyi~~~~~~~~l 213 (267)
T cd02541 189 KPEE-----APS----NLAIVGRYVLTPDIFDIL 213 (267)
T ss_pred CCCC-----CCC----ceEEEEEEEcCHHHHHHH
Confidence 3210 001 236788999999887655
No 62
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.80 E-value=1.1e-07 Score=98.53 Aligned_cols=181 Identities=19% Similarity=0.168 Sum_probs=109.7
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
++.+|+||||.||||+...||.++|+ .|++++++.++.+.+ .++. ..++.++ +..+.+++
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i---~gkpli~~~i~~l~~---------------~gi~-~i~vv~~-~~~~~i~~ 64 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTL---AGKPMVQHVIDAANE---------------LGAQ-HVHLVYG-HGGDLLKQ 64 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhccee---CChhHHHHHHHHHHh---------------cCCC-cEEEEEC-CCHHHHHH
Confidence 68899999999999998889999998 899999999888753 1111 2344454 45667777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++... ++.+..|+ .+.|+++.+..... .+ . .-++++|.+.|+++
T Consensus 65 ~~~~~--------~~~~i~~~---------------------~~~Gt~~al~~a~~-----~l-~-~~~~vlV~~gD~P~ 108 (456)
T PRK09451 65 TLADE--------PLNWVLQA---------------------EQLGTGHAMQQAAP-----FF-A-DDEDILMLYGDVPL 108 (456)
T ss_pred hhccC--------CcEEEECC---------------------CCCCcHHHHHHHHH-----hh-c-cCCcEEEEeCCccc
Confidence 77531 23332222 36788886665422 22 1 24789999999986
Q ss_pred ccccccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeE
Q 016006 179 VRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 257 (397)
Q Consensus 179 ~~~~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~ 257 (397)
....+.. ++..+.+.+ ..+.+++..+|.. .|++. + ++| .|+++.|-|..... ....+..|+++++
T Consensus 109 i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~-yG~v~-~-~~g--~V~~~~EKp~~~~~-------~~~~~~~~~GiYi 174 (456)
T PRK09451 109 ISVETLQRLRDAKPQGG--IGLLTVKLDNPTG-YGRIT-R-ENG--KVVGIVEQKDATDE-------QRQIQEINTGILV 174 (456)
T ss_pred CCHHHHHHHHHHhhcCC--EEEEEEEcCCCCC-ceEEE-e-cCC--eEEEEEECCCCChH-------HhhccEEEEEEEE
Confidence 4332222 333333333 3334444444544 58764 3 255 45566654431100 1111346899999
Q ss_pred eehHHHHHHhhc
Q 016006 258 FTLDFLNQVANG 269 (397)
Q Consensus 258 ~~l~~L~~~~~~ 269 (397)
|+.+.|.+.++.
T Consensus 175 ~~~~~l~~~l~~ 186 (456)
T PRK09451 175 ANGADLKRWLAK 186 (456)
T ss_pred EEHHHHHHHHHh
Confidence 999888776653
No 63
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.68 E-value=4.3e-07 Score=94.73 Aligned_cols=195 Identities=13% Similarity=0.129 Sum_probs=111.5
Q ss_pred EEEecCCCCCcCC----CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 22 VLLLSGGQGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 22 vviLaGG~GTRLg----~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
.|+||||.||||+ .+.||.++|+ ..++|++++.++++..+ ++. ..+|.|+..-...+.
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l--~g~~~ll~~tl~~l~~~---------------~~~-~iviv~~~~~~~~~~ 64 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLAL--VGDLTMLQQTLKRLAGL---------------PCS-SPLVICNEEHRFIVA 64 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEc--CCCCcHHHHHHHHHhcC---------------CCc-CcEEecCHHHHHHHH
Confidence 6899999999998 3579999887 23389999998887631 111 224566554444566
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHH--CCceEEEEEcCC
Q 016006 98 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT--RGIKYIDCYGVD 175 (397)
Q Consensus 98 ~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~--~G~eyv~v~~vD 175 (397)
+.+++ +|++.. .+.. +..+.|+|++..... ..+.+ .+-..++|++.|
T Consensus 65 ~~l~~---~~~~~~--~~i~---------------------Ep~~~gTa~ai~~aa-----~~~~~~~~~~~~vlVl~~D 113 (468)
T TIGR01479 65 EQLRE---IGKLAS--NIIL---------------------EPVGRNTAPAIALAA-----LLAARRNGEDPLLLVLAAD 113 (468)
T ss_pred HHHHH---cCCCcc--eEEe---------------------cccccCchHHHHHHH-----HHHHHHHCCCcEEEEecCc
Confidence 66654 343321 2332 235778887765421 11222 234579999999
Q ss_pred Cccccccc-cccchhh---hccCCcEEEEEeecCCCCcccceEEEeCC--C-CceEEEEeccCChhhhhhccCCCCceee
Q 016006 176 NALVRVAD-PTFLGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGK--G-GPLTVVEYSELDPSLASAINQETGRLRF 248 (397)
Q Consensus 176 N~l~~~~D-p~~lg~~---~~~~~~~~~kv~~k~~p~e~vGvl~~~~~--~-g~~~vvEy~el~~~~~~~~~~~~g~~~f 248 (397)
+++....+ -.++..+ .+++..+++-+.+ +.|....|.+..... + +...|..+.|-|+.......-..|.+
T Consensus 114 ~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p-~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~-- 190 (468)
T TIGR01479 114 HVITDEDAFQAAVKLAMPAAAEGKLVTFGIVP-THPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDY-- 190 (468)
T ss_pred eeecCHHHHHHHHHHHHHHHhcCCEEEEEecC-CCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCe--
Confidence 98632111 1122222 3345555555544 446667898876411 1 22356666666653211100012322
Q ss_pred eccceeeeEeehHHHHHHhhc
Q 016006 249 CWSNVCLHMFTLDFLNQVANG 269 (397)
Q Consensus 249 ~~~Ni~~~~~~l~~L~~~~~~ 269 (397)
.-|.++++|+.+.|.+.++.
T Consensus 191 -~wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 191 -YWNSGMFLFRASRYLAELKK 210 (468)
T ss_pred -EEEeeEEEEEHHHHHHHHHH
Confidence 24889999998877666653
No 64
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.60 E-value=1.1e-06 Score=81.84 Aligned_cols=133 Identities=11% Similarity=0.141 Sum_probs=87.7
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.||||+ ...||.++|+ .|++++++.++.+.+ .++. ..+|.+.....+.+++
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv---~g~pli~~~l~~l~~---------------~g~~-~iivv~~~~~~~~i~~ 63 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPV---ANKPMIWYPLDWLEK---------------AGFE-DVIVVVPEEEQAEIST 63 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEE---CCeeHHHHHHHHHHH---------------CCCC-eEEEEECHHHHHHHHH
Confidence 6889999999997 4789999999 799999998888763 1211 2355565555567888
Q ss_pred HHhhcCCCCCCC-CcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCc
Q 016006 99 YFEGHKYFGLES-DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 177 (397)
Q Consensus 99 ~~~~~~~fgl~~-~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~ 177 (397)
++++.. +.... ..+.+.. ...+.|+|+.++...+. + .+.++|+++|.+
T Consensus 64 ~l~~~~-~~~~~~~~~~~~~---------------------~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i 112 (214)
T cd04198 64 YLRSFP-LNLKQKLDEVTIV---------------------LDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLI 112 (214)
T ss_pred HHHhcc-cccCcceeEEEec---------------------CCCCcChHHHHHHHHhh-----c----CCCEEEEeCccc
Confidence 887532 11110 1111111 23488999999887542 1 356889999976
Q ss_pred cccccccccchhhhccCCcEEEEEeecC
Q 016006 178 LVRVADPTFLGYFIDKGVSAGAKVVRKA 205 (397)
Q Consensus 178 l~~~~Dp~~lg~~~~~~~~~~~kv~~k~ 205 (397)
. ...--.++-.|...++.+++-+.+..
T Consensus 113 ~-~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 113 T-DLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred c-ccCHHHHHHHHhccCCcEEEEEeccC
Confidence 3 33333477778788888877655543
No 65
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.52 E-value=2.4e-06 Score=80.03 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=96.1
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCcc--chHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF--TDDAT 96 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~--t~~~t 96 (397)
+|+||||.||||+ ...||+|+|+ .|++++++.++.+.. .++.- .+|.|... ..+.+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i---~g~pli~~~l~~l~~---------------~g~~~-ivvv~~~~~~~~~~~ 61 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEV---DGKPMIEWVIESLAK---------------IFDSR-FIFICRDEHNTKFHL 61 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEE---CCEEHHHHHHHhhhc---------------cCCce-EEEEEChHHhhhhhH
Confidence 5899999999996 3789999998 899999998887763 12222 13333211 22233
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCC
Q 016006 97 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 176 (397)
Q Consensus 97 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN 176 (397)
.+.++... .+ .++ ++.|. .+.|+++.+.+... .+ .+.++++|.+.|+
T Consensus 62 ~~~~~~~~-~~---~~i-~~~~~---------------------~~~g~~~~l~~a~~-----~l--~~~~~~lv~~~D~ 108 (231)
T cd04183 62 DESLKLLA-PN---ATV-VELDG---------------------ETLGAACTVLLAAD-----LI--DNDDPLLIFNCDQ 108 (231)
T ss_pred HHHHHHhC-CC---CEE-EEeCC---------------------CCCcHHHHHHHHHh-----hc--CCCCCEEEEecce
Confidence 33443211 11 122 12221 37788777665432 12 1347889999999
Q ss_pred ccccccccccchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeee
Q 016006 177 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 256 (397)
Q Consensus 177 ~l~~~~Dp~~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~ 256 (397)
+. ...-..++-.+...+.+.++-++.. +....|.+..+ ++|+ |.++.+-+.. + ...|++++
T Consensus 109 i~-~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~v~~d-~~~~--v~~~~ek~~~---------~----~~~~~Giy 169 (231)
T cd04183 109 IV-ESDLLAFLAAFRERDLDGGVLTFFS--SHPRWSYVKLD-ENGR--VIETAEKEPI---------S----DLATAGLY 169 (231)
T ss_pred ee-ccCHHHHHHHhhccCCceEEEEEeC--CCCCeEEEEEC-CCCC--EEEeEEcCCC---------C----CccEeEEE
Confidence 75 3221224444445566655444443 23345666554 3554 3343322110 0 13688899
Q ss_pred EeehH-HHHHHh
Q 016006 257 MFTLD-FLNQVA 267 (397)
Q Consensus 257 ~~~l~-~L~~~~ 267 (397)
+|+.+ .+.+.+
T Consensus 170 ~~~~~~~~~~~l 181 (231)
T cd04183 170 YFKSGSLFVEAA 181 (231)
T ss_pred EECcHHHHHHHH
Confidence 99976 333433
No 66
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.51 E-value=2e-06 Score=80.33 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=94.8
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||||.|+||+ ...||.++|+ .|++++++.++.+.+ .++. ..+|++.. ..+.+.+
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv---~g~pli~~~l~~l~~---------------~gi~-~i~vv~~~-~~~~~~~ 62 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPV---ANVPLIDYTLEWLEK---------------AGVE-EVFVVCCE-HSQAIIE 62 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceE---CCEEHHHHHHHHHHH---------------CCCC-eEEEEeCC-cHHHHHH
Confidence 6789999999997 4789999999 899999998887763 1221 13555554 4556667
Q ss_pred HHhhcCCCCCC-CCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCc
Q 016006 99 YFEGHKYFGLE-SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 177 (397)
Q Consensus 99 ~~~~~~~fgl~-~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~ 177 (397)
++.+..+.... ...+.+. + . ....+.|+++....... .+ .+.+.+.++|.+
T Consensus 63 ~~~~~~~~~~~~~~~v~~~-------~--------~----~~~~~~Gta~~l~~~~~-----~i----~~dflv~~gD~i 114 (216)
T cd02507 63 HLLKSKWSSLSSKMIVDVI-------T--------S----DLCESAGDALRLRDIRG-----LI----RSDFLLLSCDLV 114 (216)
T ss_pred HHHhcccccccCCceEEEE-------E--------c----cCCCCCccHHHHHHHhh-----cC----CCCEEEEeCCEe
Confidence 77653321000 0011111 0 0 11247788877665422 11 356899999987
Q ss_pred cccccccccchh--hhccCCcEEEEEeecCCC--------CcccceEEEeCCCCceEEEEeccCChh
Q 016006 178 LVRVADPTFLGY--FIDKGVSAGAKVVRKAYP--------QEKVGVFVRRGKGGPLTVVEYSELDPS 234 (397)
Q Consensus 178 l~~~~Dp~~lg~--~~~~~~~~~~kv~~k~~p--------~e~vGvl~~~~~~g~~~vvEy~el~~~ 234 (397)
. ...-..++-. ....+.++.+.+.....+ .+.-++++.+.+.++..++.|.+-+++
T Consensus 115 ~-~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 180 (216)
T cd02507 115 S-NIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180 (216)
T ss_pred e-cCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence 4 3322335522 333455555444332211 223477777644556788888876554
No 67
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.41 E-value=1.1e-05 Score=76.08 Aligned_cols=178 Identities=19% Similarity=0.200 Sum_probs=100.8
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
++++|+||+|.++||+ +|.+.|+ .||+++++.++++.+. .++ .-+++++. ++.+.+
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i---~GkPli~~~i~~l~~~--------------~~~--~~ivv~t~--~~~i~~ 57 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDI---LGKPMIQHVYERAAQA--------------AGV--EEVYVATD--DQRIED 57 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCcc---CCcCHHHHHHHHHHhc--------------CCC--CeEEEECC--hHHHHH
Confidence 5789999999999995 4999998 8999999999887731 011 12333333 478888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCcc
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 178 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l 178 (397)
++++ +|. .+. + +. ...+.|++++..++. . .+.+.+++.++|+++
T Consensus 58 ~~~~---~~~---~v~-~-~~-------------------~~~~~g~~~~~~a~~------~---~~~d~~lv~~~D~P~ 101 (238)
T PRK13368 58 AVEA---FGG---KVV-M-TS-------------------DDHLSGTDRLAEVML------K---IEADIYINVQGDEPM 101 (238)
T ss_pred HHHH---cCC---eEE-e-cC-------------------ccCCCccHHHHHHHH------h---CCCCEEEEEcCCcCc
Confidence 8874 343 121 1 11 122567776555432 2 256789999999997
Q ss_pred ccccccc-cchhhhccCC-cEEEEEeecC------CCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeec
Q 016006 179 VRVADPT-FLGYFIDKGV-SAGAKVVRKA------YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCW 250 (397)
Q Consensus 179 ~~~~Dp~-~lg~~~~~~~-~~~~kv~~k~------~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~ 250 (397)
....+-. ++..+...+. ++.+-+.+.. +|.. .|++. . ++|+. ..+.+-+... .. +.......
T Consensus 102 i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~-~-~~g~v--~~~~~~~~~~---~~--~~~~~~~~ 171 (238)
T PRK13368 102 IRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNV-VKVVV-D-KNGDA--LYFSRSPIPS---RR--DGESARYL 171 (238)
T ss_pred CCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCC-CEEEE-C-CCCCE--EEeeCCCCCC---CC--CCCCCcee
Confidence 5433332 3444433333 4433333322 1322 23333 2 35643 3444322110 00 00111124
Q ss_pred cceeeeEeehHHHHHH
Q 016006 251 SNVCLHMFTLDFLNQV 266 (397)
Q Consensus 251 ~Ni~~~~~~l~~L~~~ 266 (397)
.|+++++|+.++++..
T Consensus 172 ~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 172 KHVGIYAFRRDVLQQF 187 (238)
T ss_pred EEEEEEEeCHHHHHHH
Confidence 7999999999999874
No 68
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=98.28 E-value=5e-06 Score=73.26 Aligned_cols=36 Identities=31% Similarity=0.579 Sum_probs=32.9
Q ss_pred EEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHH
Q 016006 22 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 62 (397)
Q Consensus 22 vviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~ 62 (397)
+||||||.|+|||. ||.++++ .|+|++++.++.+..
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i---~g~~li~~~l~~l~~ 36 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPI---GGKPLIERVLEALRE 36 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEE---TTEEHHHHHHHHHHH
T ss_pred CEEECCcCcccCCC--CccceeE---CCccHHHHHHHHhhc
Confidence 58999999999985 9999998 999999999998874
No 69
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=98.28 E-value=2.1e-05 Score=72.93 Aligned_cols=186 Identities=15% Similarity=0.147 Sum_probs=100.0
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
++++|+||||.|+||+ .|.+.++ .|+|++++.++.+.+.. . +.-++.++ .++.+.+
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l---~Gkpll~~~l~~l~~~~--------------~--~~~IvV~~--~~~~i~~ 56 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL---GGKPLIAWTIEAALESK--------------L--FDRVVVST--DDEEIAE 56 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh---CCccHHHHHHHHHHhCC--------------C--CCEEEEEC--CcHHHHH
Confidence 5789999999999996 4989888 89999999999887311 1 11133333 3566777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHC--CceEEEEEcCCC
Q 016006 99 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR--GIKYIDCYGVDN 176 (397)
Q Consensus 99 ~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~--G~eyv~v~~vDN 176 (397)
++.+ +|.. + .+..+ .....-..|.++..... ++.+... +.+++++++.|+
T Consensus 57 ~~~~---~~~~---~-~~~~~----------------~~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~ 108 (223)
T cd02513 57 VARK---YGAE---V-PFLRP----------------AELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTS 108 (223)
T ss_pred HHHH---hCCC---c-eeeCC----------------hHHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCC
Confidence 7764 3321 1 11111 00111122333333332 3334332 357999999999
Q ss_pred ccccccccc-cchhhhccCCcEEEEEeecCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceee
Q 016006 177 ALVRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 255 (397)
Q Consensus 177 ~l~~~~Dp~-~lg~~~~~~~~~~~kv~~k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~ 255 (397)
++....+-. ++..+...+.+..+.+.+.... -..+.. .. ++| ..++-|.+-.... .++... .+.-|.++
T Consensus 109 P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~-~~~~~~~~~~~~~----~q~~~~--~~~~n~~~ 178 (223)
T cd02513 109 PLRSAEDIDEAIELLLSEGADSVFSVTEFHRF-PWRALG-LD-DNG-LEPVNYPEDKRTR----RQDLPP--AYHENGAI 178 (223)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEEEEecCcC-cHHhee-ec-cCC-ceeccCcccccCC----cCCChh--HeeECCEE
Confidence 985433332 4444445667777776654422 222222 21 133 3334443211111 111111 12347778
Q ss_pred eEeehHHHHHH
Q 016006 256 HMFTLDFLNQV 266 (397)
Q Consensus 256 ~~~~l~~L~~~ 266 (397)
++++.+++.+.
T Consensus 179 y~~~~~~~~~~ 189 (223)
T cd02513 179 YIAKREALLES 189 (223)
T ss_pred EEEEHHHHHhc
Confidence 99999988664
No 70
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=98.19 E-value=1.4e-05 Score=75.34 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=49.5
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
.+++|+||||.|+|||.+.||.++++ .|+|++++.++++... ..+. .++|.|+......+.+
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~l~~l---~gkpll~~~i~~~~~~--------------~~~~-~ivVv~~~~~~~~~~~ 63 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKMWLDL---VGEPIFIHALRPFLAD--------------NRCS-KIIIVTQAQERKHVQD 63 (230)
T ss_pred ceEEEEECCeeccccCCCCCcceeEE---CCeEHHHHHHHHHHcC--------------CCCC-EEEEEeChhhHHHHHH
Confidence 37899999999999998899999998 8999999999887631 0111 3466666655566666
Q ss_pred HHhh
Q 016006 99 YFEG 102 (397)
Q Consensus 99 ~~~~ 102 (397)
++++
T Consensus 64 ~~~~ 67 (230)
T PRK13385 64 LMKQ 67 (230)
T ss_pred HHHh
Confidence 6764
No 71
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=1.4e-05 Score=75.02 Aligned_cols=118 Identities=17% Similarity=0.335 Sum_probs=81.7
Q ss_pred EEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHH
Q 016006 20 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 99 (397)
Q Consensus 20 vavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~ 99 (397)
+.+||||+|.|||||.+.||+|..+ .|++++.+++++|.. .++. -.+|.|+++..+.+++|
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev---~gr~ii~~~i~~L~~---------------~gi~-e~vvV~~g~~~~lve~~ 64 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEV---GGREIIYRTIENLAK---------------AGIT-EFVVVTNGYRADLVEEF 64 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhc---CCeEeHHHHHHHHHH---------------cCCc-eEEEEeccchHHHHHHH
Confidence 4589999999999999999999777 699999998888763 1221 34888999999999999
Q ss_pred HhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCccc
Q 016006 100 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 179 (397)
Q Consensus 100 ~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l~ 179 (397)
+.++++ +..++..+. |.=+.-.|+++.. .+.|. +.+.+.+.|-+.
T Consensus 65 l~~~~~------~~~iv~N~~---------------------y~ktN~~~Sl~~a---kd~~~----~~fii~~sD~vy- 109 (239)
T COG1213 65 LKKYPF------NAKIVINSD---------------------YEKTNTGYSLLLA---KDYMD----GRFILVMSDHVY- 109 (239)
T ss_pred HhcCCc------ceEEEeCCC---------------------cccCCceeEEeee---hhhhc----CcEEEEeCCEee-
Confidence 998653 344443221 1111112333222 24443 227888899885
Q ss_pred cccccccchhhhccC
Q 016006 180 RVADPTFLGYFIDKG 194 (397)
Q Consensus 180 ~~~Dp~~lg~~~~~~ 194 (397)
+|.++-...+..
T Consensus 110 ---e~~~~e~l~~a~ 121 (239)
T COG1213 110 ---EPSILERLLEAP 121 (239)
T ss_pred ---cHHHHHHHHhCc
Confidence 788888887754
No 72
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=98.13 E-value=1.3e-05 Score=73.44 Aligned_cols=61 Identities=30% Similarity=0.514 Sum_probs=46.5
Q ss_pred EEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHHH
Q 016006 21 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 100 (397)
Q Consensus 21 avviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~~ 100 (397)
.+|+||||+|||||. .||.++++ .|++++++.++.+... ++. .+++.++. ..+.++.++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i---~GkplI~~vi~~l~~~---------------~i~-~I~Vv~~~-~~~~~~~~l 60 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEV---CGRCLIDHVLSPLLKS---------------KVN-NIIIATSP-HTPKTEEYI 60 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEE---CCEEHHHHHHHHHHhC---------------CCC-EEEEEeCC-CHHHHHHHH
Confidence 478999999999976 79999998 7999999999888631 111 23555554 567788888
Q ss_pred hh
Q 016006 101 EG 102 (397)
Q Consensus 101 ~~ 102 (397)
++
T Consensus 61 ~~ 62 (183)
T TIGR00454 61 NS 62 (183)
T ss_pred hh
Confidence 64
No 73
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=3e-05 Score=77.90 Aligned_cols=200 Identities=15% Similarity=0.255 Sum_probs=128.1
Q ss_pred CCEEEEEecCCCCCcCC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccch
Q 016006 18 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 93 (397)
Q Consensus 18 gkvavviLaGG~GTRLg---~~~PKg~~~i~l~~~k-sll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~ 93 (397)
.++-+++||||+|+||+ ...+|...|. .|| -+.++.+-... + .++. .+.+.|-...|
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpF---gGkYRiIDF~LSN~v---------N------SGi~-~I~VltQy~~~ 64 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPF---GGKYRIIDFALSNCV---------N------SGIR-RIGVLTQYKSH 64 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccccccc---CceeEEEeEEccccc---------c------cCCC-eEEEEeccchh
Confidence 36788999999999998 6678887666 343 22344222222 1 1222 24777777777
Q ss_pred HHHHHHHhhcCCCCCCC--CcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEE
Q 016006 94 DATRKYFEGHKYFGLES--DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 171 (397)
Q Consensus 94 ~~t~~~~~~~~~fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v 171 (397)
...+++.....|++++ +.|+++...+- .+++ .| --|+.+++.. + +..+.+.+-+|+.|
T Consensus 65 -SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~----~~~~---------~w-y~Gtadai~Q--n---l~~i~~~~~eyvlI 124 (393)
T COG0448 65 -SLNDHIGRGWPWDLDRKNGGVFILPAQQR----EGGE---------RW-YEGTADAIYQ--N---LLIIRRSDPEYVLI 124 (393)
T ss_pred -HHHHHhhCCCccccccccCcEEEeCchhc----cCCC---------cc-eeccHHHHHH--h---HHHHHhcCCCEEEE
Confidence 8888888887887764 34444421100 0111 12 2344444432 1 34455779999999
Q ss_pred EcCCCccccccccccchhhhccCCcEEEEEee--cCCCCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeee
Q 016006 172 YGVDNALVRVADPTFLGYFIDKGVSAGAKVVR--KAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFC 249 (397)
Q Consensus 172 ~~vDN~l~~~~Dp~~lg~~~~~~~~~~~kv~~--k~~p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~ 249 (397)
++.|-+ .+..--.++-+|.+.++|+++.|.+ +..+. ..|++-.+ ++| +|+|+.|-|.+.. ++ ..
T Consensus 125 lsgDhI-YkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas-~fGim~~D-~~~--~i~~F~eKp~~~~----~~-----~~ 190 (393)
T COG0448 125 LSGDHI-YKMDYSDMLDFHIESGADVTVAVKEVPREEAS-RFGVMNVD-ENG--RIIEFVEKPADGP----PS-----NS 190 (393)
T ss_pred ecCCEE-EecCHHHHHHHHHHcCCCEEEEEEECChHhhh-hcCceEEC-CCC--CEEeeeeccCcCC----cc-----cc
Confidence 999998 5765556999999999999966543 33333 34765554 566 5699998877611 00 01
Q ss_pred ccceeeeEeehHHHHHHhhcc
Q 016006 250 WSNVCLHMFTLDFLNQVANGL 270 (397)
Q Consensus 250 ~~Ni~~~~~~l~~L~~~~~~~ 270 (397)
.+.+++++|+.++|.+++...
T Consensus 191 laSMgiYIf~~~~L~~~L~~~ 211 (393)
T COG0448 191 LASMGIYIFNTDLLKELLEED 211 (393)
T ss_pred eeeeeeEEEcHHHHHHHHHHH
Confidence 367889999999999998754
No 74
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.12 E-value=8.8e-06 Score=72.96 Aligned_cols=38 Identities=26% Similarity=0.543 Sum_probs=33.9
Q ss_pred EEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHH
Q 016006 20 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 62 (397)
Q Consensus 20 vavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~ 62 (397)
+++|+||||.|+|||. ||.++++ .|++++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~---~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL---DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee---CCeeHHHHHHHHHHh
Confidence 4689999999999986 9999998 899999999998763
No 75
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=98.01 E-value=0.00013 Score=69.43 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=100.1
Q ss_pred EEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHHHh
Q 016006 22 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 101 (397)
Q Consensus 22 vviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~~~ 101 (397)
+||+|+|.||||+ +|.++++ .||+++++.++++.+. ++. .++|-|. ++.+.+.++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l---~GkPli~~~le~~~~~---------------~~d-~VvVvt~---~~~i~~~~~ 56 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI---FGKPMIVHVAENANES---------------GAD-RCIVATD---DESVAQTCQ 56 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc---CCcCHHHHHHHHHHhC---------------CCC-eEEEEeC---HHHHHHHHH
Confidence 6899999999994 7999988 8999999999987531 111 1244343 355777776
Q ss_pred hcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCccccc
Q 016006 102 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 181 (397)
Q Consensus 102 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l~~~ 181 (397)
+ ||.. +..-. ...+.|...+..++.. +.....+++.++++|.+|.
T Consensus 57 ~---~g~~---~v~~~---------------------~~~~~Gt~r~~~~~~~------l~~~~~d~Vli~~gD~Pli-- 101 (238)
T TIGR00466 57 K---FGIE---VCMTS---------------------KHHNSGTERLAEVVEK------LALKDDERIVNLQGDEPFI-- 101 (238)
T ss_pred H---cCCE---EEEeC---------------------CCCCChhHHHHHHHHH------hCCCCCCEEEEEcCCcCcC--
Confidence 4 3432 11100 1124555555554321 1112357899999999985
Q ss_pred cccccchhhh----ccCCcEEEEEeecCCCCc-----ccceEEEeCCCCceEEEEeccC--Chhhhhhc-cCCCCceeee
Q 016006 182 ADPTFLGYFI----DKGVSAGAKVVRKAYPQE-----KVGVFVRRGKGGPLTVVEYSEL--DPSLASAI-NQETGRLRFC 249 (397)
Q Consensus 182 ~Dp~~lg~~~----~~~~~~~~kv~~k~~p~e-----~vGvl~~~~~~g~~~vvEy~el--~~~~~~~~-~~~~g~~~f~ 249 (397)
+|..+-.++ ..++++++-+++..++.+ .+-++. + .+|+. +=++.- |-. +... ...+-+....
T Consensus 102 -~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~-~-~~g~a--lyfsr~~ip~~-R~~~~~~~tpq~~~~ 175 (238)
T TIGR00466 102 -PKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVL-D-SQGYA--LYFSRSLIPFD-RDFFAKRQTPVGDNL 175 (238)
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEe-C-CCCeE--EEecCCCCCCC-CCcccccccccccce
Confidence 455544333 344677776776654333 122222 2 35532 112221 100 0000 0001111112
Q ss_pred ccceeeeEeehHHHHHHhh
Q 016006 250 WSNVCLHMFTLDFLNQVAN 268 (397)
Q Consensus 250 ~~Ni~~~~~~l~~L~~~~~ 268 (397)
.-|++++.|+.++|++...
T Consensus 176 ~~h~Giy~~~~~~L~~~~~ 194 (238)
T TIGR00466 176 LRHIGIYGYRAGFIEEYVA 194 (238)
T ss_pred eEEEEEEeCCHHHHHHHHh
Confidence 3599999999999999875
No 76
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=97.93 E-value=4.6e-05 Score=68.74 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=32.3
Q ss_pred EEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHH
Q 016006 22 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 62 (397)
Q Consensus 22 vviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~ 62 (397)
+||||||.||||| .||.++++ .|+|++++.++++++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~---~g~pll~~~i~~l~~ 37 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY---KGKTILEHVVDNALR 37 (188)
T ss_pred eEEECCCCcccCC--CCceeccc---CCeeHHHHHHHHHHH
Confidence 6899999999998 58999988 899999999988763
No 77
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=97.88 E-value=5.8e-05 Score=69.93 Aligned_cols=39 Identities=31% Similarity=0.665 Sum_probs=35.5
Q ss_pred EEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 20 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 20 vavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
+++|+||||.|+|||...||.++|+ .|+|++++.++++.
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i---~Gkpll~~~i~~l~ 39 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL---GGKPVLEHTLEAFL 39 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE---CCeEHHHHHHHHHh
Confidence 4679999999999998789999998 89999999999876
No 78
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=97.81 E-value=0.0001 Score=68.07 Aligned_cols=37 Identities=22% Similarity=0.520 Sum_probs=34.3
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
.+..|+||||+++|| .+|+++++ .|++++++.++++.
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~---~g~~lie~v~~~L~ 40 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPL---NGRPLIEHVIDRLR 40 (192)
T ss_pred CceEEEecCCccccc---ccccccee---CCeEHHHHHHHHhc
Confidence 678999999999999 89999998 99999999999887
No 79
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=97.78 E-value=0.00012 Score=66.65 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=32.0
Q ss_pred EEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 21 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 21 avviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
++||||||.|+|||. +|.++++ .|+|++++.++.++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~ 37 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL---GETTLGSASLKTAL 37 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee---CCccHHHHHHHHHH
Confidence 479999999999986 7999888 89999999888765
No 80
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.76 E-value=5.4e-05 Score=71.37 Aligned_cols=65 Identities=23% Similarity=0.439 Sum_probs=48.5
Q ss_pred EEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHH
Q 016006 20 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 99 (397)
Q Consensus 20 vavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~ 99 (397)
|++|+||||.|+|||.+.||-.+++ .|+++|++.++.+.+. ..+. .+++.+++...+.++++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l---~Gkpvl~~tl~~f~~~--------------~~i~-~Ivvv~~~~~~~~~~~~ 62 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL---GGKPVLEYTLEAFLAS--------------PEID-EIVVVVPPEDIDYVEEL 62 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE---TTEEHHHHHHHHHHTT--------------TTES-EEEEEESGGGHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE---CCeEeHHHHHHHHhcC--------------CCCC-eEEEEecchhHHHHHHh
Confidence 6899999999999999999999998 8999999988887631 1111 23555566666788887
Q ss_pred Hhh
Q 016006 100 FEG 102 (397)
Q Consensus 100 ~~~ 102 (397)
+.+
T Consensus 63 ~~~ 65 (221)
T PF01128_consen 63 LSK 65 (221)
T ss_dssp HHH
T ss_pred hcC
Confidence 776
No 81
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=97.75 E-value=0.00011 Score=68.17 Aligned_cols=38 Identities=29% Similarity=0.631 Sum_probs=34.7
Q ss_pred EEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 21 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 21 avviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
++|+||||.|||||.+.||.++++ .|+|++++.++++.
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l---~gkpll~~~l~~l~ 38 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL---GGRPLLEHTLDAFL 38 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE---CCeEHHHHHHHHHh
Confidence 368999999999998889999998 89999999998876
No 82
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=97.68 E-value=0.00068 Score=68.97 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=37.0
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
++++|+||||.|||||...||.++++ .|+|++++.++.+.
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKqll~l---~GkPll~~tl~~l~ 44 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQWLRI---GGKPLWLHVLENLS 44 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeEEEE---CCeeHHHHHHHHHh
Confidence 68899999999999998899999998 89999999888876
No 83
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=97.67 E-value=0.00029 Score=65.96 Aligned_cols=40 Identities=25% Similarity=0.582 Sum_probs=37.0
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
++.+|+||||.|||||...||.++++ .|+|++++.++++.
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~---~g~pli~~~l~~l~ 42 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPL---GGKPILEHTLEAFL 42 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEE---CCEEHHHHHHHHHH
Confidence 67899999999999998899999998 89999999999876
No 84
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=97.67 E-value=0.00015 Score=65.16 Aligned_cols=37 Identities=30% Similarity=0.568 Sum_probs=33.2
Q ss_pred EEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHH
Q 016006 21 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 62 (397)
Q Consensus 21 avviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~ 62 (397)
++|+||||+|+|||. ||.++++ .|+|++++.++++..
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 38 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLEL---GGKPLLEHVLERLKP 38 (181)
T ss_pred cEEEECCCccccCCC--CceeeEE---CCEEHHHHHHHHHHh
Confidence 579999999999986 9999998 799999999988763
No 85
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.62 E-value=0.00012 Score=70.41 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=37.8
Q ss_pred CCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHH
Q 016006 18 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 62 (397)
Q Consensus 18 gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~ 62 (397)
.++++|+||||.|||||...||.++++ .|++++++.++.+..
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l---~Gkpll~~tl~~~~~ 64 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPL---LGQPIALYSLYTFAR 64 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEE---CCeEHHHHHHHHHHh
Confidence 468999999999999999899999998 899999998887763
No 86
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.61 E-value=0.00031 Score=64.89 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=34.5
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
++.+|+||||+|+|||. +|.++++ .|+|++++.++.+.
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~ 44 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW---QGVPLLQRVARIAA 44 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE---CCEeHHHHHHHHHH
Confidence 68899999999999985 7999998 79999999998875
No 87
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.59 E-value=0.00031 Score=71.08 Aligned_cols=39 Identities=26% Similarity=0.505 Sum_probs=35.2
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
++++|+||||+||||| ..||.++++ .|+|++++.++.+.
T Consensus 5 ~i~~VILAgG~s~Rmg-g~~K~ll~i---~Gkpll~~~i~~l~ 43 (366)
T PRK14489 5 QIAGVILAGGLSRRMN-GRDKALILL---GGKPLIERVVDRLR 43 (366)
T ss_pred CceEEEEcCCcccCCC-CCCCceeEE---CCeeHHHHHHHHHH
Confidence 7889999999999996 379999998 79999999998875
No 88
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.58 E-value=0.00014 Score=65.43 Aligned_cols=60 Identities=28% Similarity=0.542 Sum_probs=47.8
Q ss_pred EEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHHH
Q 016006 21 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 100 (397)
Q Consensus 21 avviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~~ 100 (397)
.+|+||||+|||||. .=|.++++ +||+++.+.++.+.. .. . -.++-||++| ..|++|+
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~---~~----------d----~i~v~isp~t-p~t~~~~ 59 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRK---IV----------D----EIIVAISPHT-PKTKEYL 59 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHh---hc----------C----cEEEEeCCCC-HhHHHHH
Confidence 479999999999996 45888887 999999998887763 21 1 1378888887 6889999
Q ss_pred hh
Q 016006 101 EG 102 (397)
Q Consensus 101 ~~ 102 (397)
.+
T Consensus 60 ~~ 61 (177)
T COG2266 60 ES 61 (177)
T ss_pred Hh
Confidence 87
No 89
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=97.42 E-value=0.0015 Score=61.47 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.2
Q ss_pred EEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 22 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 22 vviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
+|+||||.++||+ +|.+.++ .|+|++++.++.+.
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l---~Gkpli~~~i~~l~ 35 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL---GGKPLLEHLLDRLK 35 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc---CCccHHHHHHHHHH
Confidence 5899999999995 5999888 89999999998876
No 90
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.36 E-value=0.0043 Score=64.97 Aligned_cols=193 Identities=16% Similarity=0.178 Sum_probs=111.7
Q ss_pred CCCEEEEEecCCCCCcCC----CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccc
Q 016006 17 DGKLAVLLLSGGQGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFT 92 (397)
Q Consensus 17 ~gkvavviLaGG~GTRLg----~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t 92 (397)
+-++-.||||||.||||- ...||.++|+ -.++|+||..++++..+ +..=++ |.|+...
T Consensus 3 ~~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~---------------~~~~~i-ivt~~~~ 64 (478)
T PRK15460 3 QSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV---------------ECESPV-VICNEQH 64 (478)
T ss_pred CCceEEEEECCCCccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC---------------CCCCcE-EEeCHHH
Confidence 345778999999999996 3459999886 33589999999987631 111233 5588777
Q ss_pred hHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCC--chH--hHHHhhCchHHHHHHC--C-
Q 016006 93 DDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGN--GGV--YSALKSSKLLEDMATR--G- 165 (397)
Q Consensus 93 ~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~--Ggi--~~~L~~sg~l~~l~~~--G- 165 (397)
.+.+++-+.+.+. ...+ +..-|-|. +-+ +.++ .+.++ +
T Consensus 65 ~~~v~~ql~~~~~---~~~~-------------------------ii~EP~~rnTApaialaa~-------~~~~~~~~~ 109 (478)
T PRK15460 65 RFIVAEQLRQLNK---LTEN-------------------------IILEPAGRNTAPAIALAAL-------AAKRHSPES 109 (478)
T ss_pred HHHHHHHHHhcCC---cccc-------------------------EEecCCCCChHHHHHHHHH-------HHHHhcCCC
Confidence 7777777765221 1112 12223332 211 2222 12222 2
Q ss_pred ceEEEEEcCCCccccccccccchhh------hccCCcEEEEEeecCCCCcccceEEEeCC------CCceEEEEeccCCh
Q 016006 166 IKYIDCYGVDNALVRVADPTFLGYF------IDKGVSAGAKVVRKAYPQEKVGVFVRRGK------GGPLTVVEYSELDP 233 (397)
Q Consensus 166 ~eyv~v~~vDN~l~~~~Dp~~lg~~------~~~~~~~~~kv~~k~~p~e~vGvl~~~~~------~g~~~vvEy~el~~ 233 (397)
-.-+.|+..|... .. ...|.... ++.+.-+++-+.+. .|....|-|-.... .+...|..+.|-|+
T Consensus 110 ~~~v~vlPaDH~I-~d-~~~F~~~i~~A~~~A~~~~lvt~GI~Pt-~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd 186 (478)
T PRK15460 110 DPLMLVLAADHVI-AD-EDAFRAAVRNAMPYAEAGKLVTFGIVPD-LPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPN 186 (478)
T ss_pred CCeEEEecccccc-CC-HHHHHHHHHHHHHHHhcCCEEEEecCCC-CCCCCCCeEEeCCccccccccCceEeeEEEeCCC
Confidence 2468899999874 31 12233221 22344444555554 58888888865311 03356788889888
Q ss_pred h-hhhhccCCCCceeeeccceeeeEeehHHHHHHhhc
Q 016006 234 S-LASAINQETGRLRFCWSNVCLHMFTLDFLNQVANG 269 (397)
Q Consensus 234 ~-~~~~~~~~~g~~~f~~~Ni~~~~~~l~~L~~~~~~ 269 (397)
. .+...- .+|.+. + |.++++|+.+.+-+.++.
T Consensus 187 ~~tA~~yl-~~G~y~-W--NsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 187 LETAQAYV-ASGEYY-W--NSGMFLFRAGRYLEELKK 219 (478)
T ss_pred HHHHHHHH-HcCCEE-E--ecceeheeHHHHHHHHHH
Confidence 5 333322 345432 3 777899999887666553
No 91
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.29 E-value=0.00026 Score=65.23 Aligned_cols=40 Identities=28% Similarity=0.577 Sum_probs=35.5
Q ss_pred CCCEEEEEecCCCCCcCCCCCCCccccccCCCC-CChHHHHHHHHH
Q 016006 17 DGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSG-KSLFQLQAERIL 61 (397)
Q Consensus 17 ~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~-ksll~~~~~~i~ 61 (397)
..++++|+||||+++||| .+|.++++ .| +|++++.++++.
T Consensus 6 ~~~i~~vILAgG~s~RmG--~~K~ll~~---~g~~~ll~~~i~~l~ 46 (196)
T PRK00560 6 IDNIPCVILAGGKSSRMG--ENKALLPF---GSYSSLLEYQYTRLL 46 (196)
T ss_pred ccCceEEEECCcccccCC--CCceEEEe---CCCCcHHHHHHHHHH
Confidence 457899999999999997 48999888 78 999999999876
No 92
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=97.15 E-value=0.00035 Score=63.09 Aligned_cols=38 Identities=32% Similarity=0.634 Sum_probs=33.6
Q ss_pred EEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 20 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 20 vavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
+++|+||||.|||||. .||.++++ .|+|++++.++++.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i---~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL---GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE---CCEEHHHHHHHHHH
Confidence 4689999999999984 39999998 89999999999875
No 93
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.14 E-value=0.01 Score=58.50 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=111.8
Q ss_pred EEEEEecCCCCCcC----CCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHH
Q 016006 20 LAVLLLSGGQGTRL----GSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 95 (397)
Q Consensus 20 vavviLaGG~GTRL----g~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~ 95 (397)
+.-||||||.|||| ....||-.++ |.+++||||..++|+..+.. . -.+++.|+..-...
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~--L~~~~Sllq~T~~R~~~l~~--------------~-~~~~vVtne~~~f~ 64 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLK--LFGDLSLLQQTVKRLAFLGD--------------I-EEPLVVTNEKYRFI 64 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCcccee--eCCCCcHHHHHHHHHhhcCC--------------c-cCeEEEeCHHHHHH
Confidence 45689999999999 4778999865 55689999999999874321 1 23467777776666
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCC----chHhHHHhhCchHHHHHHCCceEEEE
Q 016006 96 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGN----GGVYSALKSSKLLEDMATRGIKYIDC 171 (397)
Q Consensus 96 t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~----Ggi~~~L~~sg~l~~l~~~G~eyv~v 171 (397)
+++=+.+-+. ++ ..+ + ..-|.|- .=++.++ .-....|-.-+.|
T Consensus 65 v~eql~e~~~-----~~-------------~~~-i--------llEP~gRnTApAIA~aa~------~~~~~~~d~~~lV 111 (333)
T COG0836 65 VKEQLPEIDI-----EN-------------AAG-I--------ILEPEGRNTAPAIALAAL------SATAEGGDALVLV 111 (333)
T ss_pred HHHHHhhhhh-----cc-------------ccc-e--------EeccCCCCcHHHHHHHHH------HHHHhCCCcEEEE
Confidence 6666664211 00 001 1 2223332 1122222 1123334345788
Q ss_pred EcCCCccccccccccchhh------hccCCcEEEEEeecCCCCcccceEEEeCC---CCceEEEEeccCChhhhhhccCC
Q 016006 172 YGVDNALVRVADPTFLGYF------IDKGVSAGAKVVRKAYPQEKVGVFVRRGK---GGPLTVVEYSELDPSLASAINQE 242 (397)
Q Consensus 172 ~~vDN~l~~~~Dp~~lg~~------~~~~~~~~~kv~~k~~p~e~vGvl~~~~~---~g~~~vvEy~el~~~~~~~~~~~ 242 (397)
+..|-.. .. ...|.-.. ++++.-+++-+++.+ |.-..|-|-.-.+ .+...|-++-|-|+......--+
T Consensus 112 lpsDH~I-~d-~~af~~av~~A~~~A~~g~lVTfGI~Pt~-PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~ 188 (333)
T COG0836 112 LPSDHVI-AD-EEAFLNAVKKAEKAAEEGGIVTFGIPPTR-PETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVE 188 (333)
T ss_pred ecCccee-cc-HHHHHHHHHHHHHHHHcCCEEEEecCCCC-CccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHH
Confidence 8888874 31 22333221 234555666666655 7777787765211 15677888999888543321124
Q ss_pred CCceeeeccceeeeEeehHHHHHHhh
Q 016006 243 TGRLRFCWSNVCLHMFTLDFLNQVAN 268 (397)
Q Consensus 243 ~g~~~f~~~Ni~~~~~~l~~L~~~~~ 268 (397)
.|++.. |-+.++|+.+.+-+-++
T Consensus 189 sG~y~W---NSGmF~Fra~~~l~e~~ 211 (333)
T COG0836 189 SGEYLW---NSGMFLFRASVFLEELK 211 (333)
T ss_pred cCceEe---eccceEEEHHHHHHHHH
Confidence 666655 55568999876654444
No 94
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=97.09 E-value=0.0005 Score=62.72 Aligned_cols=39 Identities=33% Similarity=0.599 Sum_probs=34.8
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
++.+|+||||.|||||. .||.++++ .|+|++++.++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~~-~~K~ll~~---~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMGG-VDKGLQEL---NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCCC-CCCceeEE---CCEEHHHHHHHHHh
Confidence 68899999999999963 69999998 89999999988875
No 95
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=97.08 E-value=0.0011 Score=62.89 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=52.1
Q ss_pred CCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHH
Q 016006 18 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 97 (397)
Q Consensus 18 gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~ 97 (397)
.++.+|+||+|.|||||.+.||-.+++ .|+++|++.++.++... .+ =.++|.++...+....
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~l~l---~g~pll~~tl~~f~~~~--------------~i-~~Ivvv~~~~~~~~~~ 64 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQYLEL---GGRPLLEHTLEAFLESP--------------AI-DEIVVVVSPEDDPYFE 64 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceEEEE---CCEEehHHHHHHHHhCc--------------CC-CeEEEEEChhhhHHHH
Confidence 478899999999999999999999988 99999999888776411 11 1246677776777777
Q ss_pred HHHh
Q 016006 98 KYFE 101 (397)
Q Consensus 98 ~~~~ 101 (397)
++.+
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 7775
No 96
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.013 Score=56.69 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=106.4
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+.|.|+|||+= -..||=|+|| -+|+..|++++...+ .| |--+++.++.+...+++
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPI---vdKP~IqYiVeEa~~---------------aG--Ie~i~iVTgr~K~~IeD 66 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYIVEEAVA---------------AG--IEEILIVTGRGKRAIED 66 (291)
T ss_pred EEEEccCcccccccccccCchhhccc---cCchhHHHHHHHHHH---------------cC--CCEEEEEecCCcchHHH
Confidence 6889999999994 5679999999 889999999998763 13 22344444444447777
Q ss_pred HHhhcCCCCC--------------------CCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchH
Q 016006 99 YFEGHKYFGL--------------------ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLL 158 (397)
Q Consensus 99 ~~~~~~~fgl--------------------~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l 158 (397)
+|.. .|-| +..++.|..|. .|.|-|.+....+
T Consensus 67 hFD~--s~ELE~~L~~~~K~~~L~~v~~i~~~~~i~~vRQ~---------------------e~~GLGhAVl~A~----- 118 (291)
T COG1210 67 HFDT--SYELENTLEKRGKRELLEEVRSIPPLVTISFVRQK---------------------EPLGLGHAVLCAK----- 118 (291)
T ss_pred hCcC--cHHHHHHHHHhCHHHHHHHHHhcccCceEEEEecC---------------------CCCcchhHHHhhh-----
Confidence 7743 1111 11234444444 6999998887643
Q ss_pred HHHHHCCceEEEEEcCCCccccccccc---cchhhhcc-CCcEEEEEeecCCCCcccceEEEe--CCCCceEEEEeccCC
Q 016006 159 EDMATRGIKYIDCYGVDNALVRVADPT---FLGYFIDK-GVSAGAKVVRKAYPQEKVGVFVRR--GKGGPLTVVEYSELD 232 (397)
Q Consensus 159 ~~l~~~G~eyv~v~~vDN~l~~~~Dp~---~lg~~~~~-~~~~~~kv~~k~~p~e~vGvl~~~--~~~g~~~vvEy~el~ 232 (397)
.|. |-|-+.|.=.|-++ ...-|. ++-...+. +.-++++-+++.. -.+.||+... ..++.++|...-|-|
T Consensus 119 -~~v--g~EpFaVlL~Ddl~-~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~-v~kYGvi~~g~~~~~~~~~v~~~VEKP 193 (291)
T COG1210 119 -PFV--GDEPFAVLLPDDLV-DSEKPCLKQMIELYEETGGSVIGVEEVPPED-VSKYGVIDPGEPVEKGVYKVKGMVEKP 193 (291)
T ss_pred -hhc--CCCceEEEeCCeee-cCCchHHHHHHHHHHHhCCcEEEEEECCHHH-CcccceEecCccccCCeEEEEEEEECC
Confidence 343 67777777677764 322222 33333333 3455566665553 4566988621 113456777777766
Q ss_pred hhhhhhccCCCCceeeeccceeeeEeehHHHHH
Q 016006 233 PSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 265 (397)
Q Consensus 233 ~~~~~~~~~~~g~~~f~~~Ni~~~~~~l~~L~~ 265 (397)
.-. .-+-|.+=++-|+++.+....
T Consensus 194 ~~~---------~APSnlai~GRYil~p~IFd~ 217 (291)
T COG1210 194 KPE---------EAPSNLAIVGRYVLTPEIFDI 217 (291)
T ss_pred CCC---------CCCcceeeeeeeecCHHHHHH
Confidence 421 111123344456677655443
No 97
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.88 E-value=0.0017 Score=65.87 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=34.9
Q ss_pred CCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 18 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 18 gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
-+++.||||||+|+|||. +|.++++ .|+|++++.++.+.
T Consensus 173 ~~i~~iILAGG~SsRmG~--~K~ll~~---~Gk~ll~~~l~~l~ 211 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMGS--DKALLSY---HESNQLVHTAALLR 211 (369)
T ss_pred CCceEEEEcCCccccCCC--CcEEEEE---CCccHHHHHHHHHH
Confidence 467899999999999984 8999998 89999999988875
No 98
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=96.88 E-value=0.0011 Score=66.80 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=35.1
Q ss_pred CCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHH
Q 016006 17 DGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61 (397)
Q Consensus 17 ~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~ 61 (397)
++.+..|+||||+|+||| .+|.++++ .|+|++++.++++.
T Consensus 158 ~~~i~~IILAGGkSsRMG--~dKaLL~~---~GkpLl~~~ie~l~ 197 (346)
T PRK14500 158 QTPLYGLVLTGGKSRRMG--KDKALLNY---QGQPHAQYLYDLLA 197 (346)
T ss_pred CCCceEEEEeccccccCC--CCccccee---CCccHHHHHHHHHH
Confidence 447889999999999998 59999988 79999999887765
No 99
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=96.48 E-value=0.0044 Score=56.78 Aligned_cols=60 Identities=22% Similarity=0.442 Sum_probs=46.9
Q ss_pred EEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHH
Q 016006 22 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 98 (397)
Q Consensus 22 vviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~ 98 (397)
+|+||.|+|||+. .+.||+++.| .|+++++.++++++. .+ |--++...++.+|+- +
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e---------------~g--I~dI~IVvGYlkE~F-e 61 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE---------------AG--IDDITIVVGYLKEQF-E 61 (231)
T ss_pred eEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH---------------CC--CceEEEEeeehHHHH-H
Confidence 6899999999986 8889999998 999999999999872 12 334555678877765 4
Q ss_pred HHhh
Q 016006 99 YFEG 102 (397)
Q Consensus 99 ~~~~ 102 (397)
||++
T Consensus 62 YLkd 65 (231)
T COG4750 62 YLKD 65 (231)
T ss_pred HHHH
Confidence 5654
No 100
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=95.87 E-value=0.12 Score=48.66 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=97.8
Q ss_pred EEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHHHh
Q 016006 22 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 101 (397)
Q Consensus 22 vviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~~~ 101 (397)
+|++|.|.++||+ .|-+.++ .|++++++.++.+++. ..+. .++.+++ ++.+.++.+
T Consensus 2 aiIpArG~Skr~~---~Knl~~l---~GkpLi~~ti~~a~~s--------------~~~d--~IvVstd--~~~i~~~a~ 57 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF---CGKPMIAYSIEAALNS--------------GLFD--KVVVSTD--DEEIAEVAK 57 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc---CCcCHHHHHHHHHHhC--------------CCCC--EEEEeCC--CHHHHHHHH
Confidence 5889999999995 5888777 8999999999987631 0111 2333343 366777776
Q ss_pred hcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHH-CCceEEEEEcCCCcccc
Q 016006 102 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT-RGIKYIDCYGVDNALVR 180 (397)
Q Consensus 102 ~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~-~G~eyv~v~~vDN~l~~ 180 (397)
+ +|. .|. |.. |.++..--.|..+++... ++.+.. ...+.+.+++.|.+|..
T Consensus 58 ~---~g~---~v~-~~r----------------~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~ 109 (222)
T TIGR03584 58 S---YGA---SVP-FLR----------------PKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQ 109 (222)
T ss_pred H---cCC---EeE-EeC----------------hHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCC
Confidence 5 343 111 110 111111122333333332 334432 34688999999999965
Q ss_pred ccccc-cchhhhccCCcEEEEEeecCC-CCcccceEEEeCCCCceEEEEeccCChhhhhhccCCCCceeeeccceeeeEe
Q 016006 181 VADPT-FLGYFIDKGVSAGAKVVRKAY-PQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 258 (397)
Q Consensus 181 ~~Dp~-~lg~~~~~~~~~~~kv~~k~~-p~e~vGvl~~~~~~g~~~vvEy~el~~~~~~~~~~~~g~~~f~~~Ni~~~~~ 258 (397)
..|-. .+....+.++|..+.|++... |... .... ++|++...-...... ..|+ .-+...-|-+++++
T Consensus 110 ~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~---~~~~-~~g~~~~~~~~~~~~-----~rQd--~~~~y~~nga~y~~ 178 (222)
T TIGR03584 110 AKILKEAFELLKQPNAHFVFSVTSFAFPIQRA---FKLK-ENGGVEMFFPEHFNT-----RSQD--LEEAYHDAGQFYWG 178 (222)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeccCCChHHh---eEEC-CCCcEEecCCCcccC-----CCCC--CchheeeCCeEEEE
Confidence 44433 344445567899988887532 3221 1111 356543222111110 1111 11122346677999
Q ss_pred ehHHHHH
Q 016006 259 TLDFLNQ 265 (397)
Q Consensus 259 ~l~~L~~ 265 (397)
+.+.+.+
T Consensus 179 ~~~~~~~ 185 (222)
T TIGR03584 179 KSQAWLE 185 (222)
T ss_pred EHHHHHh
Confidence 9998754
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=95.30 E-value=0.1 Score=48.36 Aligned_cols=118 Identities=25% Similarity=0.291 Sum_probs=73.5
Q ss_pred CCCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHH
Q 016006 17 DGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 96 (397)
Q Consensus 17 ~gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t 96 (397)
..+++.|+||.|.||||| .+|-++|+ .|++++.+.+++.+. .+.. .+++-|+....+..
T Consensus 3 ~~~v~~VvLAAGrssRmG--~~KlLap~---~g~plv~~~~~~a~~---------------a~~~-~vivV~g~~~~~~~ 61 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG--QPKLLAPL---DGKPLVRASAETALS---------------AGLD-RVIVVTGHRVAEAV 61 (199)
T ss_pred CcceEEEEEcccccccCC--Ccceeccc---CCCcHHHHHHHHHHh---------------cCCC-eEEEEeCcchhhHH
Confidence 358999999999999999 78999998 999999999998763 0111 23566666544444
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCC
Q 016006 97 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 176 (397)
Q Consensus 97 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN 176 (397)
...... . ++.+ ..+|+=.=|.-.+|+.- +......+ ..+++...|.
T Consensus 62 ~a~~~~-----~---~~~~-----------------------v~npd~~~Gls~Sl~ag--~~a~~~~~-~~v~~~lgDm 107 (199)
T COG2068 62 EALLAQ-----L---GVTV-----------------------VVNPDYAQGLSTSLKAG--LRAADAEG-DGVVLMLGDM 107 (199)
T ss_pred Hhhhcc-----C---CeEE-----------------------EeCcchhhhHhHHHHHH--HHhcccCC-CeEEEEeCCC
Confidence 444432 1 1222 12232223333444321 22333333 6899999999
Q ss_pred ccccccccccchh
Q 016006 177 ALVRVADPTFLGY 189 (397)
Q Consensus 177 ~l~~~~Dp~~lg~ 189 (397)
+.+...+..-+..
T Consensus 108 P~V~~~t~~rl~~ 120 (199)
T COG2068 108 PQVTPATVRRLIA 120 (199)
T ss_pred CCCCHHHHHHHHH
Confidence 9888777764433
No 102
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=91.26 E-value=1.4 Score=46.07 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=73.6
Q ss_pred CCCCccccccCC---CCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHH-------HHHHHhhcCC
Q 016006 36 SDPKGCVNIGLP---SGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA-------TRKYFEGHKY 105 (397)
Q Consensus 36 ~~PKg~~~i~l~---~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~-------t~~~~~~~~~ 105 (397)
..|||++|..-= ...++=++++|-.+ .|. . + ..+.++. -.|....+. +...+++ .
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~----Ya~--~---~--g~~~lHF--TVS~eH~~~F~~~~~~~~~~~e~--~ 229 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAAL----YAK--S---N--GKANLHF--TVSPEHLDLFKKEVEEVKPKYEK--K 229 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHH----HHh--c---C--CeEEEEE--eeCHHHHHHHHHHHHHHHHHHHH--h
Confidence 459999887421 23344555555433 111 1 1 2344432 234443322 3333433 3
Q ss_pred CCCCCCcEEEEEcCCe---eeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCccc
Q 016006 106 FGLESDQVTFFQQGTI---PCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 179 (397)
Q Consensus 106 fgl~~~~v~~f~Q~~~---P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l~ 179 (397)
||.. -+|.|=.|..- .+++.++..+..+.+++.--|.|||.+..-| .+..-+-|||=|+||+..
T Consensus 230 ~~v~-f~IsfS~Qk~sTDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVvp 296 (513)
T PF14134_consen 230 YGVK-FEISFSEQKPSTDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVVP 296 (513)
T ss_pred hCce-EEEEecccCCCCCeeEECCCCCccCCCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccCC
Confidence 5554 35777777633 6778888888888999999999999887765 344568899999999963
No 103
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=86.98 E-value=2.3 Score=40.26 Aligned_cols=90 Identities=30% Similarity=0.365 Sum_probs=63.1
Q ss_pred CEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHH-----------HHHHHhhhcCCCCCCCcceeEEEe
Q 016006 19 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCV-----------QRLAAQVTSEGGGSGSAAIHWYIM 87 (397)
Q Consensus 19 kvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l-----------~~l~~~~~~~~~~~~~~~ipl~IM 87 (397)
+..+||.|-=..|||-- |.+.+| .|++++++.++|...- ++.+.... . .+.. ++|
T Consensus 3 ~~~viIPAR~~STRLpg---KPLadI---~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~-~----~G~~---avm 68 (247)
T COG1212 3 KFVVIIPARLASTRLPG---KPLADI---GGKPMIVRVAERALKSGADRVVVATDDERIAEAVQ-A----FGGE---AVM 68 (247)
T ss_pred ceEEEEecchhcccCCC---Cchhhh---CCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-H----hCCE---EEe
Confidence 67899999888899832 667777 9999999999998732 11111111 1 2333 899
Q ss_pred cCccch---HHHHHHHhhcCCCCCCCCcEEEEEcCCeeeee
Q 016006 88 TSPFTD---DATRKYFEGHKYFGLESDQVTFFQQGTIPCVS 125 (397)
Q Consensus 88 tS~~t~---~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~ 125 (397)
||.+.. +.+.+.+++ .+++.+.+.+-.|+..|++.
T Consensus 69 T~~~h~SGTdR~~Ev~~~---l~~~~~~iIVNvQGDeP~i~ 106 (247)
T COG1212 69 TSKDHQSGTDRLAEVVEK---LGLPDDEIIVNVQGDEPFIE 106 (247)
T ss_pred cCCCCCCccHHHHHHHHh---cCCCcceEEEEccCCCCCCC
Confidence 998833 556666666 45556788999999999886
No 104
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=81.48 E-value=1.4 Score=44.73 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=51.0
Q ss_pred CEEEEEecCCCCCcCC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHH
Q 016006 19 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 95 (397)
Q Consensus 19 kvavviLaGG~GTRLg---~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~ 95 (397)
+...|++|||-||||- ...||.++|| .+++++.+-+.-+.+ + +-. -.++.+-..-.+.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPI---gn~PMi~YpL~~L~~----~-----------gft-eiiVv~~e~e~~~ 69 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPI---GNKPMILYPLNSLEQ----A-----------GFT-EIIVVVNEDEKLD 69 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhccc---CCcceeeeehhHHHh----c-----------CCe-EEEEEecHHHHHH
Confidence 4457899999999994 7889999999 788999887665542 1 111 1245555667778
Q ss_pred HHHHHhhcCCCCCCCC
Q 016006 96 TRKYFEGHKYFGLESD 111 (397)
Q Consensus 96 t~~~~~~~~~fgl~~~ 111 (397)
+++.+.+ ++.+...
T Consensus 70 i~~al~~--~~~l~~~ 83 (433)
T KOG1462|consen 70 IESALGS--NIDLKKR 83 (433)
T ss_pred HHHHHhc--CCccccc
Confidence 9999977 4555433
No 105
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=71.72 E-value=15 Score=33.55 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=26.0
Q ss_pred EEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHH
Q 016006 21 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 62 (397)
Q Consensus 21 avviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~ 62 (397)
++||.|-|-.+||-- |-+.++ .|||++++.++++++
T Consensus 1 iaiIpAR~gS~rlp~---Knl~~l---~gkpLi~~~i~~a~~ 36 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG---KNLKPL---GGKPLIEYVIERAKQ 36 (217)
T ss_dssp EEEEEE-SSSSSSTT---GGGSEE---TTEEHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCCc---chhhHh---CCccHHHHHHHHHHh
Confidence 367777666666622 556666 999999999999875
No 106
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=69.16 E-value=16 Score=34.67 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=73.1
Q ss_pred CCEEEEEecCCCCCcCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCcc-chHHH
Q 016006 18 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF-TDDAT 96 (397)
Q Consensus 18 gkvavviLaGG~GTRLg~~~PKg~~~i~l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~-t~~~t 96 (397)
+++++|+=|-=-.|||. =|.|.|+ -+++++++++++++.-..+ =.++|-||.. .++.+
T Consensus 2 ~~I~~IiQARmgStRLp---gKvLlpL---~~~pmI~~~lervrks~~~---------------d~ivvATS~~~~d~~l 60 (241)
T COG1861 2 SMILVIIQARMGSTRLP---GKVLLPL---GGEPMIEYQLERVRKSKDL---------------DKIVVATSDKEEDDAL 60 (241)
T ss_pred CcEEEEeeecccCccCC---cchhhhc---CCCchHHHHHHHHhccccc---------------cceEEEecCCcchhHH
Confidence 46777777744444542 1678888 7899999999998842221 1248888887 77778
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCC
Q 016006 97 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 176 (397)
Q Consensus 97 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN 176 (397)
+++..++.+ .+| |+.. -+++.-. ..-..+.+...|.=.-+||
T Consensus 61 ~~~~~~~G~--------~vf-rGs~------------------------~dVL~Rf-----~~a~~a~~~~~VVRvTGD~ 102 (241)
T COG1861 61 EEVCRSHGF--------YVF-RGSE------------------------EDVLQRF-----IIAIKAYSADVVVRVTGDN 102 (241)
T ss_pred HHHHHHcCe--------eEe-cCCH------------------------HHHHHHH-----HHHHHhcCCCeEEEeeCCC
Confidence 888887643 233 1100 2333332 2223344555677778999
Q ss_pred ccccccccccchh----hhccCCcEE
Q 016006 177 ALVRVADPTFLGY----FIDKGVSAG 198 (397)
Q Consensus 177 ~l~~~~Dp~~lg~----~~~~~~~~~ 198 (397)
++ .||.++-. +.++|+|+.
T Consensus 103 P~---~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 103 PF---LDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred CC---CCHHHHHHHHHHHHhcCCccc
Confidence 98 47876644 444566553
No 107
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.99 E-value=1.2e+02 Score=28.02 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCcc-chHHHHHHHhhcCCCC--CCCCcEEEEEcCCeeeee
Q 016006 49 GKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF-TDDATRKYFEGHKYFG--LESDQVTFFQQGTIPCVS 125 (397)
Q Consensus 49 ~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~-t~~~t~~~~~~~~~fg--l~~~~v~~f~Q~~~P~~~ 125 (397)
+-++.+-.++.|.+|...+.+ .+ ||.+--.-+. ....-+..+++ ++| ++... .+|..+
T Consensus 49 ~~~~~~~li~Ni~~Lr~~~~~--------~g--iPVvyTaqp~~qs~~draLL~d--~WGpgl~~~p---~~~~vv---- 109 (218)
T COG1535 49 NCPLMEQLIANIAKLRIWCKQ--------AG--IPVVYTAQPGEQSPEDRALLKD--FWGPGLTASP---EQQKVV---- 109 (218)
T ss_pred CCccHHHHHHHHHHHHHHHHH--------cC--CcEEEEecCCcCCHHHHHHHHH--hcCCCCCCCh---hhhhhH----
Confidence 445677788888888776654 23 5656544444 66667778865 775 43221 122211
Q ss_pred cCCcccccCCCccccccCCCch------HhHHHhhCchHHHHHHCCceEEEEEcC
Q 016006 126 KDGRFIMETPYKVAKAPDGNGG------VYSALKSSKLLEDMATRGIKYIDCYGV 174 (397)
Q Consensus 126 ~~g~~~l~~~~~i~~~P~G~Gg------i~~~L~~sg~l~~l~~~G~eyv~v~~v 174 (397)
...-+|-+| -|.++++|.+++.|++.|+..+.|..|
T Consensus 110 -------------~~l~P~~~D~vL~kwrYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 110 -------------DELAPGADDTVLTKWRYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred -------------HhcCCCCCceEEeeeehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 111222222 288999999999999999987766544
No 108
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=37.25 E-value=19 Score=24.58 Aligned_cols=14 Identities=50% Similarity=1.137 Sum_probs=11.5
Q ss_pred cCCCCCC---CCcEEEE
Q 016006 103 HKYFGLE---SDQVTFF 116 (397)
Q Consensus 103 ~~~fgl~---~~~v~~f 116 (397)
|+|||++ ++||+||
T Consensus 4 n~~FGie~~~sdqIWFY 20 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFY 20 (40)
T ss_pred hhhcCccccccccEEEe
Confidence 5689997 5799988
No 109
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=36.18 E-value=23 Score=31.18 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCceeecCCCCCCCcEEeCcccceeCCcchhhh
Q 016006 343 RLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAIC 384 (397)
Q Consensus 343 ~~~~~~l~~~g~~~~~~~~~~~~~~eisp~~sy~gE~l~~~~ 384 (397)
.+.++||+.+|+. +|-+.-++.|||++++.
T Consensus 109 ~~a~~~L~~aG~~------------~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 109 ERAKKWLKNAGVK------------EIFEVSAVTGEGIEELK 138 (143)
T ss_pred HHHHHHHHHcCCC------------CeEEEECCCCcCHHHHH
Confidence 4578999999974 24555688999999873
No 110
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=36.04 E-value=82 Score=32.22 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=72.7
Q ss_pred CCCCCcccccc--CCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchHHHHHHHhhcCCCCCCCCc
Q 016006 35 SSDPKGCVNIG--LPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQ 112 (397)
Q Consensus 35 ~~~PKg~~~i~--l~~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~~t~~~~~~~~~fgl~~~~ 112 (397)
.|+||-.++-- ..+|+.-|+-+++-|..|++ +++.+-..+++...+-+...+++.--.-+|. ..
T Consensus 121 iDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~------------~~v~~~~~~vv~~~n~~~~~ei~~~l~~~g~--~~ 186 (378)
T COG0641 121 IDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQA------------HGVDFNTLTVVNRQNVLHPEEIYHFLKSEGS--KF 186 (378)
T ss_pred ccCchHhccccccCCCCCccHHHHHHHHHHHHH------------cCCcEEEEEEEchhHhhCHHHHHHHHHHccc--ce
Confidence 78899888764 34699999999999987775 2445555666666666555555544323552 33
Q ss_pred EEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHHHHCCceEEEEEcCCCccc
Q 016006 113 VTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 179 (397)
Q Consensus 113 v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l~~~G~eyv~v~~vDN~l~ 179 (397)
+.| .|.+...+.-. .-..-...|-+-|..+.. +++.|...++..+++...|+++.
T Consensus 187 i~f-----ip~~~~~~~~~--~~~~~~~~~~~~~~fl~~-----~~~~~~~~~~~~i~i~~f~~~~~ 241 (378)
T COG0641 187 IQF-----IPLVESDNRGD--SLLEFSVTAEEYGQFLIA-----IFDEWVRHDVGRIFIQNFDQLLK 241 (378)
T ss_pred EEE-----EecccCCCCCc--cccccccCHHHHHHHHHH-----HHHHHHHhcCCeeeehhHHHHHH
Confidence 444 67765332210 000112223344444444 47788888888999999988863
No 111
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.57 E-value=53 Score=35.34 Aligned_cols=55 Identities=31% Similarity=0.535 Sum_probs=38.4
Q ss_pred CCcCCCCCCCccccccCC-CCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCccchH--------HHHHHH
Q 016006 30 GTRLGSSDPKGCVNIGLP-SGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD--------ATRKYF 100 (397)
Q Consensus 30 GTRLg~~~PKg~~~i~l~-~~ksll~~~~~~i~~l~~l~~~~~~~~~~~~~~~ipl~IMtS~~t~~--------~t~~~~ 100 (397)
=||||-..|||.+=+|.| .|||+|.- ..|. ...+|+|-|.-+.=+| .+++.|
T Consensus 329 ftrLGGKLPKGVLLvGPPGTGKTlLAR---------AvAG----------EA~VPFF~~sGSEFdEm~VGvGArRVRdLF 389 (752)
T KOG0734|consen 329 FTRLGGKLPKGVLLVGPPGTGKTLLAR---------AVAG----------EAGVPFFYASGSEFDEMFVGVGARRVRDLF 389 (752)
T ss_pred hhhccCcCCCceEEeCCCCCchhHHHH---------Hhhc----------ccCCCeEeccccchhhhhhcccHHHHHHHH
Confidence 389999999999888877 69998732 2222 3447888887665444 467777
Q ss_pred hhc
Q 016006 101 EGH 103 (397)
Q Consensus 101 ~~~ 103 (397)
..-
T Consensus 390 ~aA 392 (752)
T KOG0734|consen 390 AAA 392 (752)
T ss_pred HHH
Confidence 653
No 112
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=20.69 E-value=14 Score=33.73 Aligned_cols=25 Identities=40% Similarity=0.842 Sum_probs=10.3
Q ss_pred hcccCCceeEE-EEecCccccccccC
Q 016006 302 AFPYAPSTALF-EVLREEEFAPVKNA 326 (397)
Q Consensus 302 ~~~~~~~~~~~-~v~R~~~FsPvKn~ 326 (397)
+|.+.+...+. .+.|.+.|+||||+
T Consensus 150 a~df~~E~~v~q~~l~~d~~sPi~na 175 (201)
T PF09147_consen 150 AFDFMPESLVIQSSLRPDNFSPIKNA 175 (201)
T ss_dssp SS-B--HHHHSS-S---TT--SBTTE
T ss_pred cccccchhHHHhhhccCCCcCccccc
Confidence 34444444333 33478899999998
No 113
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=20.53 E-value=3.3e+02 Score=20.11 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=35.5
Q ss_pred eeEEEecCccchHHHHHHHhhcCCCCCCCCcEEEEEcCCeeeeecCCcccccCCCccccccCCCchHhHHHhhCchHHHH
Q 016006 82 IHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDM 161 (397)
Q Consensus 82 ipl~IMtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G~Ggi~~~L~~sg~l~~l 161 (397)
..++-.....+.+.+++++.+. +| +..+|.+-.+|+ +-|+-+-+.+|.++|-|..+
T Consensus 28 ~~~~~v~~~~~~~~~~~~l~~~--~g----------~~~vP~v~i~g~------------~igg~~~~~~~~~~g~l~~~ 83 (84)
T TIGR02180 28 YEVVELDQLSNGSEIQDYLEEI--TG----------QRTVPNIFINGK------------FIGGCSDLLALYKSGKLAEL 83 (84)
T ss_pred CEEEEeeCCCChHHHHHHHHHH--hC----------CCCCCeEEECCE------------EEcCHHHHHHHHHcCChhhh
Confidence 4455555555667788888762 23 335666655664 34556678888888887765
Done!