BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016007
         (397 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
           Phosphonate Monoester Hydrolase From Burkholderia
           Caryophylli
 pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
           Phosphonate Monoester Hydrolase From Burkholderia
           Caryophylli
 pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
           Phosphonate Monoester Hydrolase From Burkholderia
           Caryophylli
          Length = 514

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 33  KFPAIFNFGDSNSDTGGLSAVFGQAGP--PHGMSFFGGPAGRYCDGRLIVDFIAE 85
           + P +      N   G +   F ++    P  + + GG   R CDGR ++ F+AE
Sbjct: 346 RIPLVIKDAGQNRHAGQIEEGFSESIDVMPTILEWLGGETPRACDGRSLLPFLAE 400


>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
           Phosphonate Monoester Hydrolase From Burkholderia
           Caryophylli
          Length = 513

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 33  KFPAIFNFGDSNSDTGGLSAVFGQAGP--PHGMSFFGGPAGRYCDGRLIVDFIAE 85
           + P +      N   G +   F ++    P  + + GG   R CDGR ++ F+AE
Sbjct: 345 RIPLVIKDAGQNRHAGQIEEGFSESIDVMPTILEWLGGETPRACDGRSLLPFLAE 399


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,793,437
Number of Sequences: 62578
Number of extensions: 570743
Number of successful extensions: 1273
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 5
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)