BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016010
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 142/256 (55%), Gaps = 5/256 (1%)
Query: 77 ADKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCS 136
AD+I LPGQP VDFD Y+GY+TVD GRSLFY E+P+++ CS
Sbjct: 3 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 61
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+ YGA ELG FRV G L FL+SPAGVGFSY++T SD +GD
Sbjct: 62 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 121
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
TA DSY FL W ERFP YK RDFYIAGESYAGHYVP+L+
Sbjct: 122 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS----QLVHRSKNPVINLK 177
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G +GN LID +G +E W H + SD T++ + C + + C+ + A+
Sbjct: 178 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVAT 237
Query: 317 DEIGDIDIYNIYAPIC 332
E G+ID+Y++Y P+C
Sbjct: 238 AEQGNIDMYSLYTPVC 253
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 142/256 (55%), Gaps = 5/256 (1%)
Query: 77 ADKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCS 136
AD+I LPGQP VDFD Y+GY+TVD GRSLFY E+P+++ CS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+ YGA ELG FRV G L FL+SPAGVGFSY++T SD +GD
Sbjct: 67 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
TA DSY FL W ERFP YK RDFYIAGESYAGHYVP+L+
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS----QLVHRSKNPVINLK 182
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G +GN LID +G +E W H + SD T++ + C + + C+ + A+
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVAT 242
Query: 317 DEIGDIDIYNIYAPIC 332
E G+ID+Y++Y P+C
Sbjct: 243 AEQGNIDMYSLYTPVC 258
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 142/256 (55%), Gaps = 5/256 (1%)
Query: 77 ADKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCS 136
AD+I LPGQP VDFD Y+GY+TVD GRSLFY E+P+++ CS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+ YGA ELG FRV G L FL+SPAGVGFSY++T SD +GD
Sbjct: 67 SVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
TA DSY FL W ERFP YK RDFYIAGESYAGHYVP+L+
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS----QLVHRSKNPVINLK 182
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G +GN LID +G +E W H + SD T++ + C + + C+ + A+
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVAT 242
Query: 317 DEIGDIDIYNIYAPIC 332
E G+ID+Y++Y P+C
Sbjct: 243 AEQGNIDMYSLYTPVC 258
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 142/256 (55%), Gaps = 5/256 (1%)
Query: 77 ADKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCS 136
AD+I LPGQP VDFD Y+GY+TVD GRSLFY E+P+++ CS
Sbjct: 4 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 62
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+ YGA ELG FRV G L FL+SPAGVGFSY++T SD +GD
Sbjct: 63 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 122
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
TA DSY FL W ERFP YK RDFYIAGESYAGHYVP+L+
Sbjct: 123 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS----QLVHRSKNPVINLK 178
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G +GN LID +G +E W H + SD T++ + C + + C+ + A+
Sbjct: 179 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVAT 238
Query: 317 DEIGDIDIYNIYAPIC 332
E G+ID+Y++Y P+C
Sbjct: 239 AEQGNIDMYSLYTPVC 254
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 137/256 (53%), Gaps = 6/256 (2%)
Query: 78 DKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXX-XXXXXXCS 136
D+I LPGQP+GV F Y GYVT+D GR+L+Y+F E+ CS
Sbjct: 8 DRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCS 67
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+G GAM ELG FRV+ +G++L F ESPAGVGFSYS+T SD + D
Sbjct: 68 SIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDD 127
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
K+ AQD+YTFLV W ERFP Y R+FYIAGES GH++PQL+
Sbjct: 128 KM-AQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLS--QVVYRNRNNSPFINFQ 182
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G+ + + L + +G++E+ W H L SD+T C + T EC KA
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWNKAL 242
Query: 317 DEIGDIDIYNIYAPIC 332
E G+I+ Y IY P C
Sbjct: 243 AEQGNINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 120/261 (45%), Gaps = 21/261 (8%)
Query: 78 DKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCSS 137
D+I+ LPG F QY+GY+ + L Y+F ES ++ CSS
Sbjct: 5 DEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSS 62
Query: 138 LGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGDK 197
L G ++E GPF V DG TL +LESPAGVGFSYS K + D
Sbjct: 63 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK--FYATNDT 119
Query: 198 LTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXXG 257
AQ ++ L ++ FP+YK ++ GESYAG Y+P LA G
Sbjct: 120 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA------VLVMQDPSMNLQG 173
Query: 258 IAIGNALI-----DGPTRSMGVYENLWTHAL-NSDQTHKGIFTYCDFAREGNDTKECETF 311
+A+GN L D Y L + L +S QTH C+F N EC T
Sbjct: 174 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFY--DNKDLECVTN 231
Query: 312 LEKASDEIGD--IDIYNIYAP 330
L++ + +G+ ++IYN+YAP
Sbjct: 232 LQEVARIVGNSGLNIYNLYAP 252
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 120/261 (45%), Gaps = 21/261 (8%)
Query: 78 DKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCSS 137
D+I+ LPG F QY+GY+ + L Y+F ES ++ CSS
Sbjct: 7 DEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSS 64
Query: 138 LGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGDK 197
L G ++E GPF V DG TL +LESPAGVGFSYS K + D
Sbjct: 65 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK--FYATNDT 121
Query: 198 LTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXXG 257
AQ ++ L ++ FP+YK ++ GESYAG Y+P LA G
Sbjct: 122 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA------VLVMQDPSMNLQG 175
Query: 258 IAIGNALI-----DGPTRSMGVYENLWTHAL-NSDQTHKGIFTYCDFAREGNDTKECETF 311
+A+GN L D Y L + L +S QTH C+F N EC T
Sbjct: 176 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYD--NKDLECVTN 233
Query: 312 LEKASDEIGD--IDIYNIYAP 330
L++ + +G+ ++IYN+YAP
Sbjct: 234 LQEVARIVGNSGLNIYNLYAP 254
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 94 QYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCSSLGYGAMSELGPFRVNK 153
QY GY+ V+ + F+ F ES + + CSSL G ELGP +
Sbjct: 16 QYTGYLDVEDEDKHFFFWTF-ESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIGP 73
Query: 154 DGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGDKLTAQDSYTFLVNWLER 213
D K + FL+ P VGFSYS + ++ +D Y FL + ++
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFDQ 129
Query: 214 FPQY--KKRDFYIAGESYAGHYVPQLA 238
FP+Y K +DF+IAGESYAGHY+P A
Sbjct: 130 FPEYVNKGQDFHIAGESYAGHYIPVFA 156
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 94 QYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCSSLGYGAMSELGPFRVNK 153
QY GY+ V+ + F+ F ES + + CSSL G LGP +
Sbjct: 16 QYTGYLDVEDEDKHFFFWTF-ESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIGP 73
Query: 154 DGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGDKLTAQDSYTFLVNWLER 213
D K + FL+ P VGFSYS + ++ +D Y FL + ++
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFDQ 129
Query: 214 FPQY--KKRDFYIAGESYAGHYVPQLA 238
FP+Y K +DF+IAG SYAGHY+P A
Sbjct: 130 FPEYVNKGQDFHIAGASYAGHYIPVFA 156
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 135 CSSLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELN 194
CSS+ GA+ E GPFRVN DGK L+ F++ P G GFS K + +++
Sbjct: 79 CSSMD-GALVESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKID 136
Query: 195 GDKL------TAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXX 248
+K + FL N+ + FP+ R ++GESYAG Y+P A
Sbjct: 137 KNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFS 196
Query: 249 XXXXXX--XXGIAIGNALIDGPTRSM 272
+ IGN ID T+S+
Sbjct: 197 KIDGDTYDLKALLIGNGWIDPNTQSL 222
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 347 NYDPCTDYYVEAYLNTREVQTVLHVKPTN-----WTACRYVYRTQFKYTLKTFVPI 397
+YDPCT+ Y AY N R+VQ LH T W C T + ++ +PI
Sbjct: 3 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPI 58
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 347 NYDPCTDYYVEAYLNTREVQTVLHVKPTN-----WTACRYVYRTQFKYTLKTFVPI 397
+YDPCT+ Y AY N R+VQ LH T W C T + ++ +PI
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPI 56
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 347 NYDPCTDYYVEAYLNTREVQTVLHVKPTN-----WTACRYVYRTQFKYTLKTFVPI 397
+YDPCT+ Y AY N R+VQ LH T W C T + ++ +PI
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPI 56
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 347 NYDPCTDYYVEAYLNTREVQTVLHVKPTN-----WTACRYVYRTQFKYTLKTFVPI 397
+YDPCT+ Y AY N R+VQ LH T W C T + ++ +PI
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPI 56
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 348 YDPCTDYYVEAYLNTREVQTVLHVKPTN-----WTACRYVYRTQFKYTLKTFVPI 397
YDPC + YLN EVQT LH + WT C Q+ +P+
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPV 58
>pdb|2LNU|A Chain A, Solution Nmr Structure Of The Uncharacterized Protein From
Gene Locus Rrnac0354 Of Haloarcula Marismortui,
Northeast Structural Genomics Consortium Target Hmr11
Length = 190
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 303 NDTKECETFLEKASDEIGDIDIYNIYAPICINPAFQNGSIGSVHNYDPCTDYYVEAYLNT 362
DT++ ET L+ DE + +PI P + + +DP DY VEA +
Sbjct: 3 EDTEDWETQLQANRDEKDRFFSEHRQSPI---PPEERDDFDGLSYFDPDPDYRVEATVTV 59
Query: 363 REVQTVLHVKPTNWTACRYVYRTQFKYTL 391
E + ++ ++ RY++ + L
Sbjct: 60 HETPESVDLETSDDRTVRYLHVATLSFDL 88
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 202 DSYTFLVNWLERFPQYKKRDFYIAGESYAG 231
D T L +++ R P+++K +YI GES
Sbjct: 452 DELTSLTDYVTRMPEHQKNIYYITGESLKA 481
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|D Chain D, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 405
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 202 DSYTFLVNWLERFPQYKKRDFYIAGESYAG 231
D T L +++ R P+++K +YI GES
Sbjct: 180 DELTSLTDYVTRMPEHQKNIYYITGESLKA 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,577,360
Number of Sequences: 62578
Number of extensions: 468572
Number of successful extensions: 1035
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 23
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)