Query 016012
Match_columns 397
No_of_seqs 161 out of 447
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 06:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 2.5E-28 8.6E-33 189.2 6.4 60 244-304 2-61 (64)
2 2yus_A SWI/SNF-related matrix- 90.1 0.86 3E-05 35.7 6.8 50 245-300 14-63 (79)
3 2hzd_A Transcriptional enhance 87.0 0.44 1.5E-05 38.7 3.3 57 247-305 4-77 (82)
4 2yum_A ZZZ3 protein, zinc fing 86.8 1.1 3.9E-05 33.6 5.3 52 248-302 7-61 (75)
5 2cu7_A KIAA1915 protein; nucle 85.7 2 6.8E-05 32.3 6.1 50 247-302 7-56 (72)
6 1x41_A Transcriptional adaptor 82.5 3.9 0.00013 29.7 6.4 50 246-301 5-55 (60)
7 1ity_A TRF1; helix-turn-helix, 79.7 6.7 0.00023 29.1 6.9 54 243-299 4-57 (69)
8 2cqr_A RSGI RUH-043, DNAJ homo 76.1 9.9 0.00034 29.5 7.1 53 246-301 15-68 (73)
9 2iw5_B Protein corest, REST co 73.6 6.6 0.00023 37.1 6.6 52 245-302 129-180 (235)
10 2cqq_A RSGI RUH-037, DNAJ homo 73.0 8.4 0.00029 29.7 6.0 48 249-302 8-58 (72)
11 2xag_B REST corepressor 1; ami 71.2 5.6 0.00019 40.7 6.0 52 247-304 378-429 (482)
12 2elk_A SPCC24B10.08C protein; 70.3 5.7 0.0002 28.8 4.3 46 250-300 10-56 (58)
13 3sjm_A Telomeric repeat-bindin 65.4 18 0.00062 27.0 6.3 47 247-296 9-55 (64)
14 1guu_A C-MYB, MYB proto-oncoge 63.2 20 0.00069 24.8 5.9 46 249-299 3-48 (52)
15 2d9a_A B-MYB, MYB-related prot 62.0 30 0.001 24.7 6.8 50 245-299 4-53 (60)
16 1wgx_A KIAA1903 protein; MYB D 55.7 25 0.00087 27.6 5.8 51 251-304 10-61 (73)
17 1gvd_A MYB proto-oncogene prot 52.3 42 0.0014 23.3 6.0 46 249-299 3-48 (52)
18 1w0t_A Telomeric repeat bindin 50.4 52 0.0018 23.0 6.3 48 249-299 2-49 (53)
19 2eqr_A N-COR1, N-COR, nuclear 46.7 17 0.00057 26.7 3.3 45 245-295 8-52 (61)
20 2dim_A Cell division cycle 5-l 44.9 70 0.0024 23.5 6.5 48 247-299 7-54 (70)
21 2aje_A Telomere repeat-binding 44.2 55 0.0019 27.1 6.4 51 243-296 7-59 (105)
22 2yqk_A Arginine-glutamic acid 38.9 26 0.0009 25.9 3.3 53 247-307 7-59 (63)
23 2cjj_A Radialis; plant develop 35.4 45 0.0015 26.9 4.5 47 250-301 9-58 (93)
24 2din_A Cell division cycle 5-l 33.9 86 0.0029 22.7 5.4 47 248-301 8-54 (66)
25 2roh_A RTBP1, telomere binding 30.9 1.4E+02 0.0048 25.3 7.0 50 243-295 25-76 (122)
26 1gv2_A C-MYB, MYB proto-oncoge 26.4 1.5E+02 0.0051 22.9 6.0 46 249-299 4-49 (105)
27 2crg_A Metastasis associated p 25.9 59 0.002 24.6 3.4 47 245-296 4-50 (70)
28 3osg_A MYB21; transcription-DN 25.8 1.6E+02 0.0053 23.9 6.2 50 245-300 7-56 (126)
29 2lm1_A Lysine-specific demethy 24.0 34 0.0012 27.2 1.9 33 254-287 44-80 (107)
30 1c20_A DEAD ringer protein; DN 23.1 36 0.0012 28.1 1.9 44 255-299 53-103 (128)
31 2juh_A Telomere binding protei 22.9 1.6E+02 0.0053 25.0 5.8 53 242-297 10-64 (121)
32 2cxy_A BAF250B subunit, HBAF25 22.3 37 0.0013 28.0 1.9 32 255-287 52-87 (125)
33 2eqy_A RBP2 like, jumonji, at 21.7 43 0.0015 27.7 2.1 44 255-299 43-92 (122)
34 2k9n_A MYB24; R2R3 domain, DNA 21.5 2E+02 0.0068 22.5 5.9 45 250-299 2-46 (107)
35 2jrz_A Histone demethylase jar 20.3 40 0.0014 27.5 1.6 44 255-299 41-90 (117)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=2.5e-28 Score=189.17 Aligned_cols=60 Identities=47% Similarity=0.790 Sum_probs=57.1
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhcccccc
Q 016012 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (397)
Q Consensus 244 s~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~k~ 304 (397)
+.+|+||+||+|||++||+||++|| .|+|+||+||++|+|+|||++||||||||||+..+
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999 79999999999999999999999999999998754
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=90.07 E-value=0.86 Score=35.66 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=41.0
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhcc
Q 016012 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (397)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR 300 (397)
....+-.||+|=+.+|++||++.|+- =+.|-+.|+ +=|..+|+.|-++|-
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRLP 63 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHhc
Confidence 44556789999999999999999943 367777764 799999999999883
No 3
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=87.01 E-value=0.44 Score=38.67 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=36.9
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh---c-C-------------CCCccHHHHHHHhhhccccccC
Q 016012 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLEL---M-D-------------VKDLTLAHVKSHLQMYRTVKTT 305 (397)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel---M-n-------------V~GLTr~hVkSHLQKYRl~k~t 305 (397)
+..-+|.++|-..|++|+..+- +. -+=|.+|.. | | -+.=|+.+|+||||.-+..+..
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 3456899999999999999875 11 111222311 1 1 1345778999999987765443
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.79 E-value=1.1 Score=33.61 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCCh---HHHHhhcCCCCccHHHHHHHhhhcccc
Q 016012 248 PRMRWTTTLHARFVHAVELLGGHERATP---KSVLELMDVKDLTLAHVKSHLQMYRTV 302 (397)
Q Consensus 248 pRLrWT~ELH~rFV~AVeqLGG~dkAtP---K~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (397)
.+-.||+|=+++|++||+++| .+...| +.|-+.| +|=|-.+|+.|-|+|-..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999 232222 3455554 689999999999999654
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=85.67 E-value=2 Score=32.30 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=40.5
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhcccc
Q 016012 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (397)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (397)
..+-.||+|=++.|++||+++|- .=+.|-+.| +|=|..+|+.|.++|-..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999992 446666654 789999999999988543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=82.53 E-value=3.9 Score=29.74 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=39.7
Q ss_pred CCCCcccCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCccHHHHHHHhhhccc
Q 016012 246 RAPRMRWTTTLHARFVHAVELLG-GHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301 (397)
Q Consensus 246 kKpRLrWT~ELH~rFV~AVeqLG-G~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl 301 (397)
...|-.||+|=.+++++||+++| +- =+.|-+.| ++=|-.+|+.|-++|=.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34556799999999999999999 32 35666666 67899999999888743
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=79.74 E-value=6.7 Score=29.07 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhc
Q 016012 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (397)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (397)
...++.|-.||+|=-++.+++|+++|. -.=+.|.+.|++.|=|-.+|+-+-..|
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 446778889999999999999999991 134678888876688888998776655
No 8
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=76.06 E-value=9.9 Score=29.47 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=40.9
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCccHHHHHHHhhhccc
Q 016012 246 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQMYRT 301 (397)
Q Consensus 246 kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~GLTr~hVkSHLQKYRl 301 (397)
+..+-.||.|=..+|++||..+| +-+|.+--++ .-|+|=|-.+|+.|-+++..
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44556799999999999999998 2377765443 24579999999999887643
No 9
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=73.56 E-value=6.6 Score=37.13 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=43.4
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhcccc
Q 016012 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (397)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (397)
..+..-+||+|=++.|++|+...|- + =..|-++ |.+=|..+|+.|..+||..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-D---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-D---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-C---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-C---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 4467789999999999999999992 2 5667776 6789999999999999864
No 10
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=72.99 E-value=8.4 Score=29.72 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=38.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCccHHHHHHHhhhcccc
Q 016012 249 RMRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRTV 302 (397)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~GLTr~hVkSHLQKYRl~ 302 (397)
+-.||.|=..+|++|+..+++ -+|. +|-+.| |=|.++|+.|-+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 447999999999999999983 3455 466666 57999999998887544
No 11
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=71.17 E-value=5.6 Score=40.71 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=42.9
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhcccccc
Q 016012 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (397)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~k~ 304 (397)
+..-+||+|=|..|++||.+.|- -=+.|-+.++- =|..+|++|.++||....
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhC
Confidence 55789999999999999999982 35677777654 499999999999987543
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=70.29 E-value=5.7 Score=28.83 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=35.4
Q ss_pred cccCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcCCCCccHHHHHHHhhhcc
Q 016012 250 MRWTTTLHARFVHAVELLG-GHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (397)
Q Consensus 250 LrWT~ELH~rFV~AVeqLG-G~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR 300 (397)
-.||+|=.+++++||++.| +- =+.|-+.|+. +=|..+++.|-++|-
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 3699999999999999999 33 3556566532 678889998887763
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=65.37 E-value=18 Score=26.96 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=36.4
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHh
Q 016012 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 296 (397)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHL 296 (397)
+.|-.||+|=-++.+++|++.|. -.=+.|.+.+.+.|=|-.+++-.-
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence 34567999999999999999992 124678888887888888887543
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=63.15 E-value=20 Score=24.84 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=36.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhc
Q 016012 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (397)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (397)
|-.||+|=..+++++|+++|. ..=+.|-+.| +|=|-.+|+.+-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 2346676665 588888888877665
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=62.00 E-value=30 Score=24.68 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=38.3
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhc
Q 016012 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (397)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (397)
....|-.||+|=.++++++|+++|- -.=+.|-+.| +|=|-.+|+.+-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3456678999999999999999992 1235666665 678888998887766
No 16
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=55.65 E-value=25 Score=27.57 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cCCCCccHHHHHHHhhhcccccc
Q 016012 251 RWTTTLHARFVHAVELLGGHERATPKSVLEL-MDVKDLTLAHVKSHLQMYRTVKT 304 (397)
Q Consensus 251 rWT~ELH~rFV~AVeqLGG~dkAtPK~ILel-MnV~GLTr~hVkSHLQKYRl~k~ 304 (397)
.||.+=..+|.+|+..++ +.+|.+-..+ .-|+|=|.+.|..|-+....++.
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG 61 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 599999999999999987 4477765443 34688999999988766644433
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=52.30 E-value=42 Score=23.26 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=35.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhc
Q 016012 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (397)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (397)
|-.||+|=..+++++|++.|- ..=+.|.+.| +|=|-.+|+.+-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 447999999999999999992 1234566665 688888998877766
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=50.45 E-value=52 Score=23.00 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=36.4
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhc
Q 016012 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (397)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (397)
|-.||+|=.+..+++|+..|. -.=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 134677888765577888887655444
No 19
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.67 E-value=17 Score=26.66 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=33.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHH
Q 016012 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 295 (397)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSH 295 (397)
.|+..-.||+|=|+.|++|+.+.|- -=..|-++ |++=|..+|.-+
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHH
Confidence 3466678999999999999999982 23556555 468888887644
No 20
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.86 E-value=70 Score=23.48 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=38.2
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhc
Q 016012 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (397)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (397)
..|-.||+|=-++++++|.++|- ..=+.|-+.|+ +=|-.+|+-+-..|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 44568999999999999999991 23467777775 88999999887776
No 21
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=44.24 E-value=55 Score=27.06 Aligned_cols=51 Identities=22% Similarity=0.158 Sum_probs=38.8
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCccHHHHHHHh
Q 016012 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--VKDLTLAHVKSHL 296 (397)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMn--V~GLTr~hVkSHL 296 (397)
...++.|-.||+|=-+..+++|+++|. -.=+.|++.+. .+|=|-.+||-+.
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHH
Confidence 346788999999999999999999993 12357777652 4788888998643
No 22
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.91 E-value=26 Score=25.93 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=35.0
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhccccccCCc
Q 016012 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDR 307 (397)
Q Consensus 247 KpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl~k~t~r 307 (397)
..+-.||+|=+.+|.+|+.+.| -+ =..|.+.| |+.-|..+|. +-|=+.|++++
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v---~fYY~wKkt~~ 59 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELI---TFYYYWKKTSG 59 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHH---HHHHHHHCSSC
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHH---HHHhcccCCCC
Confidence 3456899999999999999999 22 23443311 5667777775 44545555543
No 23
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=35.41 E-value=45 Score=26.88 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=37.2
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcCCCCccHHHHHHHhhhccc
Q 016012 250 MRWTTTLHARFVHAVELLGGHERATPK---SVLELMDVKDLTLAHVKSHLQMYRT 301 (397)
Q Consensus 250 LrWT~ELH~rFV~AVeqLGG~dkAtPK---~ILelMnV~GLTr~hVkSHLQKYRl 301 (397)
-.||.|=...|++|+.++| . -+|. +|-+.+ +|=|-++|+.|-+++..
T Consensus 9 ~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD-K--DTPDRWANVARAV--EGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHS--TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3699999999999999998 2 2554 444444 69999999999888754
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.91 E-value=86 Score=22.73 Aligned_cols=47 Identities=13% Similarity=0.324 Sum_probs=37.0
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhccc
Q 016012 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301 (397)
Q Consensus 248 pRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYRl 301 (397)
.+-.||.|=..+++++|+++|- .=..|-++| |=|-.+|+-|-+.|-.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhC
Confidence 3457999999999999999983 346666644 5889999999888744
No 25
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=30.95 E-value=1.4e+02 Score=25.30 Aligned_cols=50 Identities=26% Similarity=0.194 Sum_probs=38.5
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhc--CCCCccHHHHHHH
Q 016012 243 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELM--DVKDLTLAHVKSH 295 (397)
Q Consensus 243 rs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelM--nV~GLTr~hVkSH 295 (397)
...++.|-.||+|=-+..+++|+++|. -.=+.|++.+ .+++=|-.++|-.
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdR 76 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDK 76 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHH
Confidence 456788899999999999999999992 1235677754 3478888888843
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=26.36 E-value=1.5e+02 Score=22.90 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=36.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhc
Q 016012 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (397)
Q Consensus 249 RLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (397)
+-.||+|=-++++++|+..|. -.=+.|-+.| +|=|..+|+.+-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 347999999999999999993 1235677766 688999998877666
No 27
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=25.85 E-value=59 Score=24.58 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=33.2
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHh
Q 016012 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 296 (397)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHL 296 (397)
.|+..-.||+|=+..|.+|+...| -+ =..|-+.| |+.-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 456667899999999999999999 22 23443311 6777777776544
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=25.77 E-value=1.6e+02 Score=23.90 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=38.4
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhcc
Q 016012 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (397)
Q Consensus 245 ~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKYR 300 (397)
....|-.||+|=-++.+++|++.|. .=+.|-+.| +|=|..+|..+-.+|-
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 3456678999999999999999993 456777665 4778888887766653
No 29
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.00 E-value=34 Score=27.18 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCc
Q 016012 254 TTLHARFVHAVELLGGHERATP----KSVLELMDVKDL 287 (397)
Q Consensus 254 ~ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GL 287 (397)
-+|++.|.. |..+||.++.+- +.|.+.||++.-
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~ 80 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSS 80 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCC
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCC
Confidence 378988876 678999887654 467889999763
No 30
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=23.12 E-value=36 Score=28.13 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCc-c--HHHHHHHhhhc
Q 016012 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDL-T--LAHVKSHLQMY 299 (397)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GL-T--r~hVkSHLQKY 299 (397)
+|++.|.. |..+||.++.+- +.|.+.||++.- | -..++.|-.||
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~ 103 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY 103 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 78988876 778999887654 467889999752 2 34566655554
No 31
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=22.86 E-value=1.6e+02 Score=24.99 Aligned_cols=53 Identities=23% Similarity=0.166 Sum_probs=40.4
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCccHHHHHHHhh
Q 016012 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--VKDLTLAHVKSHLQ 297 (397)
Q Consensus 242 krs~kKpRLrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMn--V~GLTr~hVkSHLQ 297 (397)
+.+.++.|-.||+|=-+..+++|+++|. -.=+.|++.+. .+|=|-.+||-+..
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWr 64 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWK 64 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHH
Confidence 3457788999999999999999999992 12357777764 37888888885433
No 32
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=22.34 E-value=37 Score=27.99 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCc
Q 016012 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDL 287 (397)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GL 287 (397)
+|++.|.. |..+||.++.+- +.|.+.|+++.-
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~ 87 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTS 87 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSS
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCC
Confidence 78888876 778999886643 468889999864
No 33
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.66 E-value=43 Score=27.67 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCccH--HHHHHHhhhc
Q 016012 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDLTL--AHVKSHLQMY 299 (397)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GLTr--~hVkSHLQKY 299 (397)
+|++.|.. |..+||.++.+- +.|.+.|+++.-+. ..++.|-.||
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~ 92 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERI 92 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888876 788999887654 46788999975331 3455554444
No 34
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=21.51 E-value=2e+02 Score=22.54 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=34.0
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCccHHHHHHHhhhc
Q 016012 250 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299 (397)
Q Consensus 250 LrWT~ELH~rFV~AVeqLGG~dkAtPK~ILelMnV~GLTr~hVkSHLQKY 299 (397)
-.||+|=-++++++|+..|. -.=+.|-+.|+ |=|..+|.-+-.+|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHHHHH
Confidence 47999999999999999993 23456777764 77888887655544
No 35
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=20.27 E-value=40 Score=27.55 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhcCCCCcc--HHHHHHHhhhc
Q 016012 255 TLHARFVHAVELLGGHERATP----KSVLELMDVKDLT--LAHVKSHLQMY 299 (397)
Q Consensus 255 ELH~rFV~AVeqLGG~dkAtP----K~ILelMnV~GLT--r~hVkSHLQKY 299 (397)
+|++.|.. |..+||.++.+- +.|.+.||++.-| -..|+.|-.||
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888876 778999886654 4678899997432 23455555554
Done!