Query 016014
Match_columns 397
No_of_seqs 250 out of 2071
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpn_B SPT6, chromatin structu 20.8 31 0.0011 20.3 0.7 10 2-11 14-23 (26)
2 3j1z_P YIIP, cation efflux fam 14.9 1.1E+02 0.0039 28.5 3.7 26 70-95 81-106 (306)
3 2od4_A Hypothetical protein; m 12.7 64 0.0022 24.3 0.9 28 10-38 32-61 (101)
4 4g1u_A Hemin transport system 10.6 6.1E+02 0.021 24.3 7.5 155 213-380 3-162 (357)
5 1kf6_C Fumarate reductase 15 k 10.5 6.5E+02 0.022 20.8 6.4 66 29-94 18-95 (130)
6 2lid_A Vitellogenin; lipid tra 13.6 60 0.0021 20.1 0.0 16 24-39 14-29 (35)
7 2elu_A Zinc finger protein 406 9.9 58 0.002 20.5 -0.1 8 384-391 10-17 (37)
8 1h7d_A Aminolevulinic acid syn 8.5 1.5E+02 0.0052 20.4 1.6 14 383-396 8-21 (49)
9 4ayb_P DNA-directed RNA polyme 7.9 1.3E+02 0.0043 20.7 0.9 7 384-390 24-30 (48)
10 2wfu_A Probable insulin-like p 7.5 1.2E+02 0.0041 18.1 0.6 8 387-394 18-25 (26)
No 1
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=20.80 E-value=31 Score=20.30 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=8.5
Q ss_pred ccceeeccCC
Q 016014 2 EYNYILASGN 11 (397)
Q Consensus 2 ~~~~~~~~~~ 11 (397)
||.||+.+.|
T Consensus 14 EYrYile~~~ 23 (26)
T 2xpn_B 14 EYRYVLESDP 23 (26)
T ss_pred eEEEEeecCC
Confidence 7999998876
No 2
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=14.88 E-value=1.1e+02 Score=28.55 Aligned_cols=26 Identities=12% Similarity=-0.116 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHhh
Q 016014 70 PFCTGFAAGCMIWMVIAEVLPDAFKE 95 (397)
Q Consensus 70 ~~~l~faaGvml~~v~~eLlPea~~~ 95 (397)
-.+-++..|+++..+...++-|+++.
T Consensus 81 E~l~al~~~~~l~~~~~~i~~eai~~ 106 (306)
T 3j1z_P 81 EPLAALAQSAFIMGSAFLLLFYGGER 106 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34556666666666666666666653
No 3
>2od4_A Hypothetical protein; metagenomics target, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Uncultured marine organism} SCOP: d.58.4.20
Probab=12.74 E-value=64 Score=24.32 Aligned_cols=28 Identities=39% Similarity=0.529 Sum_probs=18.0
Q ss_pred CCcchhhhhhhhcchhe--eeccCceeeehh
Q 016014 10 GNVWSPAISWALGCFSI--VTKNGRSYEVTN 38 (397)
Q Consensus 10 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 38 (397)
.|||||-.- .||.-|+ +..|-++-|+-.
T Consensus 32 envwspkvi-slgaisaefvqsnensgmyii 61 (101)
T 2od4_A 32 ENVWSPKVI-SLGAISAEFVQSNENSGMYII 61 (101)
T ss_dssp HHTHHHHHH-HHTCSEEEEEEEETTEEEEEE
T ss_pred eccCCccEE-EecceeHhhhccCcCCceEEE
Confidence 489999642 4666665 556666665543
No 4
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=10.61 E-value=6.1e+02 Score=24.33 Aligned_cols=155 Identities=8% Similarity=-0.139 Sum_probs=0.0
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCcchhhhhH-HHHHHHHHhhhhhhhHHhhhhcccchhhHHHHHHHHHhhhhhHHHHHHH
Q 016014 213 ILKLAGRKKTSSVSLPTVNSFPVSVLTLQS-FLSCGAVALHALAEGLALGVAAPKAYGLGQHMVLPVSLHGLPRGAAVAS 291 (397)
Q Consensus 213 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~-~~l~~al~lH~~~EGlaig~s~~~~~~~g~~l~laI~lHniPEG~a~~~ 291 (397)
++|..+|+|++..+..+-+....++.+..- +.......+=.+.-.+.+|.....-.+.--.+ ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~sl~~G~~~i~~~~v~~~l-------------~~~~ 69 (357)
T 4g1u_A 3 HHHHHHHHHHSSGENLYFQGHMNGRVQPRLMLGFLLILLVILALGSANMGALSLSFRTLWNTS-------------TNDA 69 (357)
T ss_dssp ------------------------CCCHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred CcccccccccCCCCchHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHh-------------cCcc
Q ss_pred HHHhcCCChHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHhhhHH-HhHHHHHHhhhhcCchh---HHHHHHH
Q 016014 292 CIYGATASLPASLAAAALIGFMGPTSAIGAILAGIDYSGLDHVMVFACGGLL-PSFGRIVKRAASLDTRK---GSCGLIF 367 (397)
Q Consensus 292 ~L~~~g~s~~~a~~~~~l~~l~~plGa~ig~~~~~~~~~~~~lla~aaG~~l-v~~~ellPea~~~~~~~---~~~~~~~ 367 (397)
.-.---..|..-...+++.+..-.+...+-.-.-.++-.-+.++|+.+|+-+ ++..-++.......... ...+++.
T Consensus 70 ~~~iv~~~RlPR~l~a~lvGaaLavsG~~~Q~~~rNPLA~P~iLGissGA~lg~~l~i~~~~~~~~~~~~~~~~~~Af~g 149 (357)
T 4g1u_A 70 MWHIWLNIRLPRVLLAVVVGCALAVSGTIMQGLFRNPLADPGLLGISSGAALCVGLIIVMPFSLPPLLALYSHMVGAFIG 149 (357)
T ss_dssp -CTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCTTTTTHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 016014 368 GVGFATLCLTCTK 380 (397)
Q Consensus 368 G~~l~~~~l~~~~ 380 (397)
++....+.+.+.+
T Consensus 150 al~a~~lv~~l~~ 162 (357)
T 4g1u_A 150 SLAISTIIFTLSR 162 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
No 5
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=10.51 E-value=6.5e+02 Score=20.75 Aligned_cols=66 Identities=14% Similarity=-0.033 Sum_probs=39.7
Q ss_pred ccC--ceeeehhhhccchhhhhhhhhhhhH---------HHHh-hhccccchhHHHHHHHHHHHHHHHHHHhhHhHHh
Q 016014 29 KNG--RSYEVTNLKEDKVPEYFTMQPIVAV---------PSFI-CADAFNKFLPFCTGFAAGCMIWMVIAEVLPDAFK 94 (397)
Q Consensus 29 ~~~--~~~~~~~~~~~~~~~~s~~~~lGa~---------~~~~-~~~~~~~~l~~~l~faaGvml~~v~~eLlPea~~ 94 (397)
||+ |.||+|+-+-+.+.-+++....|-. -.++ +-+.+--.+--++++++-..=+...|++.|+++.
T Consensus 18 k~~FYr~YMlRE~T~v~~~wf~l~Ll~Gl~~L~~G~~aw~~fv~fl~nPivvilniiaLaa~L~Ha~TwF~l~Pka~~ 95 (130)
T 1kf6_C 18 KLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAAN 95 (130)
T ss_dssp SSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred cCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHcchhhe
Confidence 454 7899999866555556655444422 1111 1111112224567778888888999999999876
No 6
>2lid_A Vitellogenin; lipid transport; HET: SEP; NMR {Synthetic}
Probab=13.60 E-value=60 Score=20.06 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=13.3
Q ss_pred hheeeccCceeeehhh
Q 016014 24 FSIVTKNGRSYEVTNL 39 (397)
Q Consensus 24 ~~~~~~~~~~~~~~~~ 39 (397)
-||+|.|..+|-+|.-
T Consensus 14 esiadnnddsyfqrkp 29 (35)
T 2lid_A 14 ESIADNNDDSYFQRKP 29 (35)
Confidence 4899999999988763
No 7
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=9.89 E-value=58 Score=20.53 Aligned_cols=8 Identities=25% Similarity=0.854 Sum_probs=5.9
Q ss_pred cCCCCCCC
Q 016014 384 LHTPYCNS 391 (397)
Q Consensus 384 ~~~~~~~~ 391 (397)
-||.|||.
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 48888874
No 8
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=8.49 E-value=1.5e+02 Score=20.38 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=10.9
Q ss_pred hcCCCCCCCCcccc
Q 016014 383 CLHTPYCNSAPEAV 396 (397)
Q Consensus 383 ~~~~~~~~~~~~~~ 396 (397)
.=+||+++..|...
T Consensus 8 l~~CPFL~R~p~~f 21 (49)
T 1h7d_A 8 LRSCPVLSQGPTGL 21 (49)
T ss_dssp CCSCCCCSSCSCSS
T ss_pred hccCCchhcCCHHH
Confidence 34799999999753
No 9
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=7.91 E-value=1.3e+02 Score=20.67 Aligned_cols=7 Identities=43% Similarity=1.388 Sum_probs=4.7
Q ss_pred cCCCCCC
Q 016014 384 LHTPYCN 390 (397)
Q Consensus 384 ~~~~~~~ 390 (397)
.+||||.
T Consensus 24 IrCpyCG 30 (48)
T 4ayb_P 24 VRCPYCG 30 (48)
T ss_dssp SCCTTTC
T ss_pred cccCccC
Confidence 4677775
No 10
>2wfu_A Probable insulin-like peptide 5 A chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster}
Probab=7.46 E-value=1.2e+02 Score=18.11 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=3.3
Q ss_pred CCCCCCcc
Q 016014 387 PYCNSAPE 394 (397)
Q Consensus 387 ~~~~~~~~ 394 (397)
.||++.||
T Consensus 18 ~YC~~~~~ 25 (26)
T 2wfu_A 18 AYCDSXXX 25 (26)
T ss_dssp HTSCC---
T ss_pred Hhcccccc
Confidence 37777765
Done!