Query 016014
Match_columns 397
No_of_seqs 250 out of 2071
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 06:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016014.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016014hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q5wa_ g.41.11.1 (A:) Npl4 {R 40.4 3 0.00022 24.3 0.2 11 382-392 8-18 (31)
2 d1dsva_ g.40.1.1 (A:) Nucleic 14.1 19 0.0014 21.0 0.2 15 19-33 14-28 (31)
3 d1cl4a_ g.40.1.1 (A:) Nucleoca 12.0 21 0.0015 20.9 -0.1 15 19-33 14-28 (32)
4 d1bboa2 g.37.1.1 (A:29-57) Enh 10.6 29 0.0021 19.5 0.2 7 384-390 2-8 (29)
5 d1ctda_ a.39.1.5 (A:) Troponin 9.7 32 0.0023 20.1 0.1 16 22-37 8-23 (34)
6 d1e0na_ b.72.1.1 (A:) Hypothet 9.3 61 0.0044 17.9 1.2 20 24-43 3-22 (27)
7 d1vf5c3 f.23.23.1 (C:250-286) 7.9 1.6E+02 0.012 17.4 2.9 23 67-89 4-26 (37)
8 d1xpma2 c.95.1.2 (A:168-388) 3 7.4 20 0.0014 30.4 -2.3 12 379-390 60-71 (221)
9 d1gl4a1 d.22.1.2 (A:399-631) D 6.3 1E+02 0.0073 26.0 1.9 40 26-69 34-78 (233)
10 d1jjda_ g.46.1.1 (A:) Cyanobac 5.7 94 0.0068 19.9 1.0 10 25-34 18-27 (52)
No 1
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=40.38 E-value=3 Score=24.28 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=8.9
Q ss_pred hhcCCCCCCCC
Q 016014 382 VCLHTPYCNSA 392 (397)
Q Consensus 382 ~~~~~~~~~~~ 392 (397)
.|.||||.|+-
T Consensus 8 sC~HCTf~N~p 18 (31)
T d1q5wa_ 8 ACQHCTFMNQP 18 (31)
T ss_dssp ECSSSCCEECT
T ss_pred EeeeeeeecCC
Confidence 58999998863
No 2
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=14.09 E-value=19 Score=20.96 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=13.6
Q ss_pred hhhcchheeeccCce
Q 016014 19 WALGCFSIVTKNGRS 33 (397)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (397)
||--|.|-.|+||+-
T Consensus 14 Wa~~Crsk~~~~G~p 28 (31)
T d1dsva_ 14 WKSECKSKFDKDGNP 28 (31)
T ss_dssp CTTTCCCSEEGGGEE
T ss_pred HHHHhhhhhccCCCC
Confidence 888999999999974
No 3
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=11.97 E-value=21 Score=20.95 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=13.5
Q ss_pred hhhcchheeeccCce
Q 016014 19 WALGCFSIVTKNGRS 33 (397)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (397)
||--|.|-.|+||+-
T Consensus 14 Wa~~Crsk~~~~G~p 28 (32)
T d1cl4a_ 14 WANECKSKTDNQGNP 28 (32)
T ss_dssp CSTTCCCTTSSSSCC
T ss_pred HHHHhhhhhccCCCc
Confidence 788999999999975
No 4
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.64 E-value=29 Score=19.54 Aligned_cols=7 Identities=57% Similarity=1.364 Sum_probs=4.9
Q ss_pred cCCCCCC
Q 016014 384 LHTPYCN 390 (397)
Q Consensus 384 ~~~~~~~ 390 (397)
.||.|||
T Consensus 2 y~C~~Cn 8 (29)
T d1bboa2 2 YHCTYCN 8 (29)
T ss_dssp EECSSSS
T ss_pred cccceee
Confidence 4677776
No 5
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.68 E-value=32 Score=20.13 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=12.9
Q ss_pred cchheeeccCceeeeh
Q 016014 22 GCFSIVTKNGRSYEVT 37 (397)
Q Consensus 22 ~~~~~~~~~~~~~~~~ 37 (397)
-||-+-|||+.-|--+
T Consensus 8 e~FRifDkNaDGyiD~ 23 (34)
T d1ctda_ 8 NAFRIFDKNADGYIDI 23 (34)
T ss_dssp HHHHTTCCSSSSCBCH
T ss_pred HHHHHHccCCcccccH
Confidence 4999999999877544
No 6
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.31 E-value=61 Score=17.86 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=15.7
Q ss_pred hheeeccCceeeehhhhccc
Q 016014 24 FSIVTKNGRSYEVTNLKEDK 43 (397)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ 43 (397)
+.|+-.|||-+-++..+.-|
T Consensus 3 weiihengrpmyynaq~q~k 22 (27)
T d1e0na_ 3 WEIIHENGRPLYYNAEQKTK 22 (27)
T ss_dssp EEEEESSSSEEEEETTTTEE
T ss_pred ceeeecCCceeeeehhhhhc
Confidence 35889999999888876554
No 7
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.88 E-value=1.6e+02 Score=17.43 Aligned_cols=23 Identities=9% Similarity=0.093 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 016014 67 KFLPFCTGFAAGCMIWMVIAEVL 89 (397)
Q Consensus 67 ~~l~~~l~faaGvml~~v~~eLl 89 (397)
..+..+++|.+.+|++-.++-|=
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlK 26 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILK 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888887766553
No 8
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
Probab=7.43 E-value=20 Score=30.43 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=8.9
Q ss_pred HHHhhcCCCCCC
Q 016014 379 TKLVCLHTPYCN 390 (397)
Q Consensus 379 ~~~~~~~~~~~~ 390 (397)
++++|+|+||+|
T Consensus 60 fd~~~fH~P~~k 71 (221)
T d1xpma2 60 FASLCFHVPFTK 71 (221)
T ss_dssp CSEEEECCSSHH
T ss_pred hheEEeecCchh
Confidence 345888888876
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.29 E-value=1e+02 Score=26.04 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=28.0
Q ss_pred eeeccCceeeehhhhccchhh-hh----hhhhhhhHHHHhhhccccchh
Q 016014 26 IVTKNGRSYEVTNLKEDKVPE-YF----TMQPIVAVPSFICADAFNKFL 69 (397)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~s----~~~~lGa~~~~~~~~~~~~~l 69 (397)
+++++||+|-.-.. +|. .+ ...++|+.++|+|-+..+...
T Consensus 34 Vv~~dGR~ytaIs~----IP~~~G~~L~~L~~ig~~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 34 VVMNHGRSYTAIST----IPETVGYSLLPLAPIGGIIGWMFAVEQDGFK 78 (233)
T ss_dssp EETTTCEEEEEEES----CCHHHHGGGTTCTHHHHHHHHHTCEECTTCC
T ss_pred EEecCceEEEEccC----CChhHhhhhhhhhhhcCceeeeEEeecCCcc
Confidence 67889999976443 554 22 345789999998877666554
No 10
>d1jjda_ g.46.1.1 (A:) Cyanobacterial metallothionein SmtA {Synechococcus sp., PCC 7942 [TaxId: 1131]}
Probab=5.70 E-value=94 Score=19.93 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=0.0
Q ss_pred heeeccCcee
Q 016014 25 SIVTKNGRSY 34 (397)
Q Consensus 25 ~~~~~~~~~~ 34 (397)
+++.|||+.|
T Consensus 18 ~Ai~kdGk~Y 27 (52)
T d1jjda_ 18 KAIDRNGLYY 27 (52)
T ss_dssp TSEESSSCEE
T ss_pred HHHhhcCcee
Done!