Query 016015
Match_columns 397
No_of_seqs 412 out of 2383
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 06:26:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2.5E-58 8.4E-63 433.8 28.0 289 95-387 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.3E-57 4.3E-62 430.0 24.4 282 99-389 3-288 (303)
3 2lck_A Mitochondrial uncouplin 100.0 3.3E-39 1.1E-43 304.2 11.8 186 95-294 102-287 (303)
4 1okc_A ADP, ATP carrier protei 100.0 2.1E-36 7.3E-41 284.2 20.0 190 200-389 5-203 (297)
5 2acm_A Mucin-1; auto-catalytic 18.6 27 0.00094 22.9 0.2 20 142-161 40-59 (66)
6 1y9i_A Low temperature require 15.9 1E+02 0.0035 25.4 3.0 46 173-218 111-158 (178)
7 3tgu_G UQCRQ, mitochondrial ub 15.1 1.3E+02 0.0043 21.3 3.0 36 260-295 33-68 (81)
8 3tgu_G UQCRQ, mitochondrial ub 12.2 1.7E+02 0.0058 20.6 3.0 39 155-193 32-70 (81)
9 4b19_A PEPA1; toxin, toxin apo 10.4 1.1E+02 0.0036 17.2 1.1 22 203-224 4-25 (30)
10 3f2e_A SIRV coat protein; four 10.0 1.1E+02 0.0039 21.2 1.4 34 338-371 6-43 (100)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.5e-58 Score=433.80 Aligned_cols=289 Identities=52% Similarity=0.867 Sum_probs=244.7
Q ss_pred chhHHHHHHHHHHHHHHhhhcccHHHHHHHHHcCccccccCCCCCCCcchHHHHHHHhhhhchhhhcccchHHHHhhhhh
Q 016015 95 AGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPT 174 (397)
Q Consensus 95 ~~~~~~~~ag~~ag~~~~~i~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gLyrG~~~~l~~~~~~ 174 (397)
.+.+.++++|++||+++.++++|+|+||+|+|++...... .....|+++++++++|+++||++|||||+.+++++.+|.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI-SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC-CGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc-ccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4678899999999999999999999999999998642111 112358999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHHHhccc-CCCCCchhhhhhHhhHhHHHHHHHHHhhccHHHHHHHHhcchhhhhcCCCcccCcHHHHHH
Q 016015 175 QALNFAFKDYFKRLFNFK-KDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYR 253 (397)
Q Consensus 175 ~~~~f~~ye~~k~~~~~~-~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pldviktr~q~~~~~~~~~~~~~y~~~~~~~~ 253 (397)
++++|.+||.+|+.+... ...+.........+++|++||++++++++|+|+||+|+|++... .+....|++++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~ 161 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--STTTCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC--CCcCcCCCCHHHHHH
Confidence 999999999999954332 22222223456789999999999999999999999999997531 122457899999999
Q ss_pred HHHHhhCcccccccchHHHHHHHHHHhHHHHHHHhhHHHHhcCCCCcchHHHHHHHHHHHHhhhhhcchHHHHHHhhccc
Q 016015 254 KTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMT 333 (397)
Q Consensus 254 ~i~~~~G~~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldviktr~q~~ 333 (397)
+|+++||++|||||+.++++|.+|+++++|.+||.+|+.+.+. .+.+....+++|+++|++++++++|+||||+|||.+
T Consensus 162 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999977543 235677889999999999999999999999999987
Q ss_pred CCC---CCCCCCHHHHHHHHHHhhCccccccchHHHHHHHhhhhHHHHHHHHHHHHH
Q 016015 334 SGE---AVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQLIV 387 (397)
Q Consensus 334 ~~~---~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~llr~~~~~~~f~~ye~~~~~l 387 (397)
... ...|++++||+++|+++||++|||||+.|+++|..+++..|.+||.+|+++
T Consensus 241 ~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 532 347999999999999999999999999999999755443499999998753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-57 Score=430.04 Aligned_cols=282 Identities=22% Similarity=0.373 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHcCcccccc--CCCCCCCcchHHHHHHHhhhhchhhhcccchHHHHhhhhhhh
Q 016015 99 IDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKS--GRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQA 176 (397)
Q Consensus 99 ~~~~ag~~ag~~~~~i~~Pld~iK~r~Q~~~~~~~~--~~~~~~~~~~~~~~~~i~~~eG~~gLyrG~~~~l~~~~~~~~ 176 (397)
.++++|++|++++.++++|+|+||+|+|++...... ......|+++++++++|+++||+++||||+.+++++.+|..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999998642110 011235899999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHhcccCCCCCchhhhhhHhhHhHHHHHHHHHhhccHHHHHHHHhcchhhhhcCCCcccCcHHHHHHHHH
Q 016015 177 LNFAFKDYFKRLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTM 256 (397)
Q Consensus 177 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pldviktr~q~~~~~~~~~~~~~y~~~~~~~~~i~ 256 (397)
++|.+||.+|+.+.+..+. ......+++|++||+++.++++|+|+||+|+|++... +....|+++++++++|+
T Consensus 83 i~f~~ye~~k~~~~~~~~~----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEH----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSS----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcC----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHH
Confidence 9999999999988754221 3346789999999999999999999999999998541 23457899999999999
Q ss_pred HhhCcccccccchHHHHHHHHHHhHHHHHHHhhHHHHhcCC-CCcchHHHHHHHHHHHHhhhhhcchHHHHHHhhcccCC
Q 016015 257 KSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGK-LQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSG 335 (397)
Q Consensus 257 ~~~G~~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~~~~-~~~~~~~~~~~g~~ag~~~~~~t~Pldviktr~q~~~~ 335 (397)
++||++|||||+.++++|.+|+++++|.+||.+|+.+.+.. .+++....+++|++||++++++++|+||||+|||.+..
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999886643 34567789999999999999999999999999999753
Q ss_pred CCCCCCCHHHHHHHHHHhhCccccccchHHHHHHHhhhhHH-HHHHHHHHHHHcC
Q 016015 336 EAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGV-LAGYDKLQLIVFG 389 (397)
Q Consensus 336 ~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~llr~~~~~~~-f~~ye~~~~~l~~ 389 (397)
..|+++++|+++|+++||++|||||+.|+++|.+|..++ |.+||.+|+.+.+
T Consensus 236 --~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 236 --GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp --SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred --cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999888 9999999987643
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.3e-39 Score=304.18 Aligned_cols=186 Identities=23% Similarity=0.344 Sum_probs=166.6
Q ss_pred chhHHHHHHHHHHHHHHhhhcccHHHHHHHHHcCccccccCCCCCCCcchHHHHHHHhhhhchhhhcccchHHHHhhhhh
Q 016015 95 AGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPT 174 (397)
Q Consensus 95 ~~~~~~~~ag~~ag~~~~~i~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gLyrG~~~~l~~~~~~ 174 (397)
.+.+.++++|++||+++.++++|+|+||+|+|++... .....|+++++++++|+++||++|||||+.+++++.+|.
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 177 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA----GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIV 177 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC----CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc----CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHH
Confidence 5678899999999999999999999999999998642 112358999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHHHhcccCCCCCchhhhhhHhhHhHHHHHHHHHhhccHHHHHHHHhcchhhhhcCCCcccCcHHHHHHH
Q 016015 175 QALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRK 254 (397)
Q Consensus 175 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pldviktr~q~~~~~~~~~~~~~y~~~~~~~~~ 254 (397)
.+++|.+||.+|+.+.+....+ ......+++|++||++++++++|+|+||+|||++.. ..|+++++|+++
T Consensus 178 ~~i~f~~ye~~k~~l~~~~~~~---~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-------~~y~~~~~~~~~ 247 (303)
T 2lck_A 178 NCAELVTYDLIKDTLLKANLMT---DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-------GQYHSAGHCALT 247 (303)
T ss_dssp HHHHHHHHHHHHHTTTTTTSCC---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-------SSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCC---CchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-------cccCCHHHHHHH
Confidence 9999999999999887543222 224568999999999999999999999999999753 359999999999
Q ss_pred HHHhhCcccccccchHHHHHHHHHHhHHHHHHHhhHHHHh
Q 016015 255 TMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVL 294 (397)
Q Consensus 255 i~~~~G~~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~ 294 (397)
|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+.
T Consensus 248 i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.1e-36 Score=284.18 Aligned_cols=190 Identities=20% Similarity=0.327 Sum_probs=165.1
Q ss_pred hhhhhHhhHhHHHHHHHHHhhccHHHHHHHHhcchhhhhcCCCcccCcHHHHHHHHHHhhCcccccccchHHHHHHHHHH
Q 016015 200 KWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYR 279 (397)
Q Consensus 200 ~~~~~~~~ag~~ag~~~~~~~~Pldviktr~q~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~glyrG~~~~llr~~~~~ 279 (397)
.+.+..+++|++||+++.++++|+|+||||+|++...........|+++++++++|+++||++|||||+.+++++.+|.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 34567899999999999999999999999999986422112234789999999999999999999999999999999999
Q ss_pred hHHHHHHHhhHHHHhcC-CCCc----chHHHHHHHHHHHHhhhhhcchHHHHHHhhcccCCC---CCCCCCHHHHHHHHH
Q 016015 280 GLYFGMYDSLKPVVLTG-KLQD----SFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGE---AVKYKSSLDAFSQIL 351 (397)
Q Consensus 280 ~i~f~~ye~lk~~~~~~-~~~~----~~~~~~~~g~~ag~~~~~~t~Pldviktr~q~~~~~---~~~y~~~~~~~~~i~ 351 (397)
+++|.+||.+|+.+... +.+. .....+++|+++|++++++++|+|+||+|||.+... ...|+++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999965332 2221 346789999999999999999999999999997532 357899999999999
Q ss_pred HhhCccccccchHHHHHHHhhhhHH-HHHHHHHHHHHcC
Q 016015 352 KNEGAKSLFKGAGANILRAVAGAGV-LAGYDKLQLIVFG 389 (397)
Q Consensus 352 ~~eG~~~lyrG~~~~llr~~~~~~~-f~~ye~~~~~l~~ 389 (397)
++||+++||||+.++++|.+|..++ |.+||.+|+.+.+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999888 9999999997643
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=18.58 E-value=27 Score=22.95 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.3
Q ss_pred cchHHHHHHHhhhhchhhhc
Q 016015 142 KGIGDCFKRTMKDEGIVALW 161 (397)
Q Consensus 142 ~~~~~~~~~i~~~eG~~gLy 161 (397)
+++.+.+..|++++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56888899999999998886
No 6
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=15.91 E-value=1e+02 Score=25.36 Aligned_cols=46 Identities=22% Similarity=0.086 Sum_probs=28.6
Q ss_pred hhhhhHHhHHHHHHHHhcccCC--CCCchhhhhhHhhHhHHHHHHHHH
Q 016015 173 PTQALNFAFKDYFKRLFNFKKD--RDGYWKWFAGNLGSGGAAGASSLL 218 (397)
Q Consensus 173 ~~~~~~f~~ye~~k~~~~~~~~--~~~~~~~~~~~~~ag~~ag~~~~~ 218 (397)
....+.|..||..|.......+ ..+....++..+++|..|++++.+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 3556678888888865433222 122334567788888888876543
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=15.14 E-value=1.3e+02 Score=21.30 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=26.7
Q ss_pred CcccccccchHHHHHHHHHHhHHHHHHHhhHHHHhc
Q 016015 260 GIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLT 295 (397)
Q Consensus 260 G~~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~~ 295 (397)
|+...||-+.-.++..+|..++.+.+|+..++....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 333444445667888999999999999999877654
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=12.21 E-value=1.7e+02 Score=20.60 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=28.3
Q ss_pred hchhhhcccchHHHHhhhhhhhhHHhHHHHHHHHhcccC
Q 016015 155 EGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKK 193 (397)
Q Consensus 155 eG~~gLyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~ 193 (397)
.|+...+|-+...++..+|..++.+.+|++.++......
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555666788888999999999999888665443
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=10.38 E-value=1.1e+02 Score=17.16 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=17.2
Q ss_pred hhHhhHhHHHHHHHHHhhccHH
Q 016015 203 AGNLGSGGAAGASSLLFVYSLD 224 (397)
Q Consensus 203 ~~~~~ag~~ag~~~~~~~~Pld 224 (397)
+.++++-.++|++-+++++-++
T Consensus 4 fv~iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHH
Confidence 4466777888888888888776
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=10.01 E-value=1.1e+02 Score=21.16 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHhhCc----cccccchHHHHHHHh
Q 016015 338 VKYKSSLDAFSQILKNEGA----KSLFKGAGANILRAV 371 (397)
Q Consensus 338 ~~y~~~~~~~~~i~~~eG~----~~lyrG~~~~llr~~ 371 (397)
+++.+.-+-+..++.+-|+ +++|.|+.....|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4677777777778888886 568999988877765
Done!