Query 016016
Match_columns 396
No_of_seqs 281 out of 1683
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10565 putative carbohydrate 100.0 1.7E-43 3.7E-48 370.0 29.0 274 15-329 194-469 (508)
2 COG0063 Predicted sugar kinase 100.0 1.1E-43 2.3E-48 345.5 23.6 243 63-331 11-256 (284)
3 KOG3974 Predicted sugar kinase 100.0 3.9E-42 8.5E-47 323.2 21.6 273 68-365 13-287 (306)
4 PF01256 Carb_kinase: Carbohyd 100.0 3.6E-40 7.8E-45 315.2 17.0 216 88-331 1-218 (242)
5 TIGR00196 yjeF_cterm yjeF C-te 100.0 9.7E-38 2.1E-42 302.4 26.8 233 69-330 8-242 (272)
6 cd01171 YXKO-related B.subtili 100.0 6.2E-38 1.3E-42 300.0 23.8 227 78-329 1-229 (254)
7 COG0351 ThiD Hydroxymethylpyri 100.0 2E-30 4.3E-35 248.4 19.6 206 85-324 3-233 (263)
8 PF02110 HK: Hydroxyethylthiaz 100.0 1.6E-27 3.6E-32 227.4 18.6 183 164-361 41-240 (246)
9 COG2145 ThiM Hydroxyethylthiaz 100.0 3.7E-27 7.9E-32 223.5 20.1 213 104-353 5-233 (265)
10 PTZ00493 phosphomethylpyrimidi 99.9 9.4E-27 2E-31 230.4 21.1 218 85-330 4-281 (321)
11 TIGR00694 thiM hydroxyethylthi 99.9 6.8E-26 1.5E-30 217.6 18.2 171 164-349 41-222 (249)
12 PRK09355 hydroxyethylthiazole 99.9 5.2E-24 1.1E-28 206.1 22.3 172 164-350 46-228 (263)
13 KOG2598 Phosphomethylpyrimidin 99.9 3E-24 6.5E-29 214.3 16.2 218 77-324 15-271 (523)
14 TIGR00097 HMP-P_kinase phospho 99.9 1.7E-23 3.6E-28 200.8 18.8 204 88-324 1-228 (254)
15 PRK08573 phosphomethylpyrimidi 99.9 1.6E-22 3.5E-27 209.3 22.5 249 86-364 3-284 (448)
16 PRK12616 pyridoxal kinase; Rev 99.9 3.1E-22 6.7E-27 194.1 19.2 207 85-324 3-237 (270)
17 cd01169 HMPP_kinase 4-amino-5- 99.9 1.7E-21 3.8E-26 184.2 19.2 205 87-325 1-230 (242)
18 PRK12412 pyridoxal kinase; Rev 99.9 3.5E-21 7.5E-26 186.5 20.7 205 85-324 1-234 (268)
19 PLN02898 HMP-P kinase/thiamin- 99.9 1.9E-21 4.1E-26 203.9 20.3 218 81-330 5-249 (502)
20 PRK09517 multifunctional thiam 99.9 1.7E-21 3.7E-26 213.1 19.8 222 80-334 236-484 (755)
21 PRK06427 bifunctional hydroxy- 99.9 7.5E-21 1.6E-25 183.0 20.9 205 85-324 4-236 (266)
22 PF08543 Phos_pyr_kin: Phospho 99.9 2.2E-21 4.7E-26 185.8 12.7 201 95-330 1-230 (246)
23 cd01170 THZ_kinase 4-methyl-5- 99.9 2E-20 4.3E-25 179.1 19.2 158 164-324 41-210 (242)
24 PRK14713 multifunctional hydro 99.9 9.4E-21 2E-25 200.0 18.5 219 82-333 26-271 (530)
25 PTZ00347 phosphomethylpyrimidi 99.9 1.5E-20 3.2E-25 197.3 19.6 210 81-324 226-466 (504)
26 PRK12413 phosphomethylpyrimidi 99.8 3E-19 6.4E-24 170.7 20.1 216 84-331 2-239 (253)
27 cd01173 pyridoxal_pyridoxamine 99.8 3.2E-18 6.9E-23 163.5 16.6 213 87-325 1-240 (254)
28 PRK07105 pyridoxamine kinase; 99.7 5.1E-16 1.1E-20 151.3 21.9 217 86-325 5-244 (284)
29 COG1105 FruK Fructose-1-phosph 99.7 5.5E-16 1.2E-20 152.3 17.9 209 87-324 55-274 (310)
30 PRK05756 pyridoxamine kinase; 99.7 1.3E-14 2.7E-19 141.7 21.1 207 87-324 3-243 (286)
31 PTZ00344 pyridoxal kinase; Pro 99.6 8.6E-14 1.9E-18 136.8 17.4 216 86-331 5-255 (296)
32 PRK08176 pdxK pyridoxal-pyrido 99.6 1.7E-13 3.6E-18 133.8 19.3 148 172-325 88-255 (281)
33 PLN02978 pyridoxal kinase 99.4 2.7E-11 5.9E-16 120.0 17.6 147 172-324 86-255 (308)
34 TIGR00687 pyridox_kin pyridoxa 99.3 1.8E-10 3.9E-15 112.4 19.8 149 171-325 73-245 (286)
35 COG2240 PdxK Pyridoxal/pyridox 99.2 5.7E-10 1.2E-14 108.3 18.0 150 169-324 70-238 (281)
36 COG2870 RfaE ADP-heptose synth 99.2 4.9E-10 1.1E-14 112.6 17.2 215 84-329 66-289 (467)
37 TIGR02198 rfaE_dom_I rfaE bifu 99.1 6.2E-09 1.3E-13 102.0 17.0 148 164-325 135-288 (315)
38 PRK10294 6-phosphofructokinase 99.1 1.5E-08 3.3E-13 99.4 19.4 148 170-325 128-278 (309)
39 PRK11316 bifunctional heptose 99.0 7E-09 1.5E-13 108.0 17.2 148 165-326 136-287 (473)
40 TIGR03828 pfkB 1-phosphofructo 99.0 3.6E-08 7.8E-13 95.9 19.2 147 167-325 122-273 (304)
41 PRK09513 fruK 1-phosphofructok 99.0 3E-08 6.5E-13 97.5 18.8 175 167-358 126-303 (312)
42 TIGR03168 1-PFK hexose kinase, 99.0 4.4E-08 9.5E-13 95.6 19.7 149 168-326 123-274 (303)
43 cd01174 ribokinase Ribokinase 99.0 6.5E-08 1.4E-12 93.4 20.2 154 158-324 115-271 (292)
44 cd01164 FruK_PfkB_like 1-phosp 98.9 1.2E-07 2.6E-12 91.9 19.8 148 167-324 123-273 (289)
45 cd01172 RfaE_like RfaE encodes 98.9 2E-07 4.4E-12 90.6 20.9 147 165-324 127-279 (304)
46 cd01166 KdgK 2-keto-3-deoxyglu 98.9 3.1E-08 6.7E-13 95.6 14.1 150 169-325 121-279 (294)
47 PRK11142 ribokinase; Provision 98.9 1.5E-07 3.4E-12 91.6 18.9 155 157-324 117-274 (306)
48 PRK13508 tagatose-6-phosphate 98.8 4.4E-07 9.5E-12 89.1 19.0 153 165-325 119-275 (309)
49 TIGR01231 lacC tagatose-6-phos 98.8 4.2E-07 9E-12 89.3 18.8 152 165-324 119-274 (309)
50 TIGR02152 D_ribokin_bact ribok 98.8 8.5E-07 1.9E-11 85.9 20.4 156 158-325 110-268 (293)
51 cd00287 ribokinase_pfkB_like r 98.7 1.8E-07 4E-12 84.6 13.3 129 174-310 59-192 (196)
52 KOG2599 Pyridoxal/pyridoxine/p 98.7 1.9E-07 4.1E-12 89.8 13.0 147 171-324 80-251 (308)
53 cd01941 YeiC_kinase_like YeiC- 98.7 2.6E-06 5.6E-11 82.1 20.4 151 163-324 119-276 (288)
54 PLN02341 pfkB-type carbohydrat 98.7 4.7E-07 1E-11 94.8 15.1 179 166-360 218-409 (470)
55 PLN02813 pfkB-type carbohydrat 98.6 7.3E-07 1.6E-11 92.4 15.6 150 168-324 220-376 (426)
56 PRK09850 pseudouridine kinase; 98.6 1.3E-06 2.7E-11 86.1 15.5 153 160-325 122-278 (313)
57 PLN02379 pfkB-type carbohydrat 98.5 3.5E-06 7.5E-11 85.6 17.1 148 169-325 174-327 (367)
58 PTZ00292 ribokinase; Provision 98.5 3.4E-06 7.4E-11 83.3 16.4 157 158-325 132-296 (326)
59 cd01168 adenosine_kinase Adeno 98.5 2.2E-06 4.8E-11 84.1 13.5 146 169-324 142-294 (312)
60 cd01167 bac_FRK Fructokinases 98.4 4E-06 8.7E-11 81.1 14.1 147 169-324 117-279 (295)
61 PTZ00247 adenosine kinase; Pro 98.4 3.8E-06 8.3E-11 84.0 13.8 150 168-325 155-320 (345)
62 PRK09954 putative kinase; Prov 98.4 7.4E-06 1.6E-10 82.5 15.1 155 158-325 173-331 (362)
63 PRK09434 aminoimidazole ribosi 98.4 7.4E-06 1.6E-10 80.0 14.4 146 171-324 118-278 (304)
64 PLN02323 probable fructokinase 98.4 8.8E-06 1.9E-10 80.6 14.6 141 169-318 133-283 (330)
65 cd01945 ribokinase_group_B Rib 98.3 1.7E-05 3.8E-10 76.3 15.1 136 170-324 124-263 (284)
66 cd01946 ribokinase_group_C Rib 98.3 1.2E-05 2.7E-10 77.4 12.6 133 168-317 110-248 (277)
67 cd01942 ribokinase_group_A Rib 98.2 5.8E-05 1.2E-09 72.4 16.3 132 169-325 123-264 (279)
68 cd01944 YegV_kinase_like YegV- 98.2 5.8E-05 1.3E-09 73.0 15.6 146 170-324 123-275 (289)
69 PLN02548 adenosine kinase 98.1 7.1E-05 1.5E-09 74.2 14.3 151 169-325 145-309 (332)
70 PF00294 PfkB: pfkB family car 98.1 3E-05 6.5E-10 74.8 11.2 152 167-325 122-280 (301)
71 cd01937 ribokinase_group_D Rib 98.0 0.00011 2.4E-09 69.7 13.0 134 170-325 105-244 (254)
72 COG0524 RbsK Sugar kinases, ri 97.9 0.00019 4.1E-09 70.3 14.1 146 169-325 126-279 (311)
73 cd01940 Fructoselysine_kinase_ 97.9 0.00025 5.4E-09 67.6 14.3 134 170-325 110-249 (264)
74 PRK15074 inosine/guanosine kin 97.8 0.00032 7E-09 73.0 14.3 103 169-281 183-293 (434)
75 cd01947 Guanosine_kinase_like 97.6 0.0011 2.4E-08 63.3 13.3 128 170-324 119-249 (265)
76 cd01943 MAK32 MAK32 kinase. M 97.5 0.0015 3.2E-08 65.3 13.6 149 170-324 118-289 (328)
77 PLN02543 pfkB-type carbohydrat 97.5 0.0022 4.7E-08 68.0 14.0 77 169-245 263-345 (496)
78 PLN02967 kinase 97.4 0.002 4.3E-08 69.4 13.6 192 169-369 332-553 (581)
79 PLN02630 pfkB-type carbohydrat 97.1 0.0041 8.8E-08 62.7 10.7 148 191-364 136-295 (335)
80 cd01939 Ketohexokinase Ketohex 96.4 0.046 1E-06 52.9 12.1 135 170-324 125-274 (290)
81 PRK09813 fructoselysine 6-kina 96.3 0.032 6.9E-07 53.3 10.6 129 170-324 111-244 (260)
82 KOG2854 Possible pfkB family c 94.9 0.3 6.4E-06 49.0 11.4 155 168-329 155-325 (343)
83 KOG2855 Ribokinase [Carbohydra 89.2 5.2 0.00011 40.4 11.7 20 297-316 263-282 (330)
84 KOG3009 Predicted carbohydrate 86.6 5.8 0.00013 41.8 10.3 62 172-239 425-486 (614)
85 PF10087 DUF2325: Uncharacteri 72.2 27 0.00059 28.4 8.1 42 165-210 41-82 (97)
86 PLN02274 inosine-5'-monophosph 66.2 44 0.00096 35.8 10.2 43 81-124 230-272 (505)
87 COG0084 TatD Mg-dependent DNas 64.6 17 0.00037 35.5 6.2 83 160-244 73-170 (256)
88 COG0541 Ffh Signal recognition 62.2 19 0.00042 37.7 6.4 101 162-274 143-247 (451)
89 TIGR01302 IMP_dehydrog inosine 62.0 70 0.0015 33.6 10.7 112 79-210 204-334 (450)
90 COG1646 Predicted phosphate-bi 62.0 31 0.00066 33.4 7.2 72 171-245 40-118 (240)
91 TIGR01768 GGGP-family geranylg 58.5 35 0.00075 32.7 7.0 69 172-243 27-101 (223)
92 COG1099 Predicted metal-depend 56.7 30 0.00065 33.4 6.1 50 162-211 84-135 (254)
93 PRK10425 DNase TatD; Provision 56.3 26 0.00057 34.0 5.9 81 162-244 73-167 (258)
94 PRK12475 thiamine/molybdopteri 54.9 1E+02 0.0022 31.2 10.1 99 85-210 24-148 (338)
95 PRK10812 putative DNAse; Provi 54.2 32 0.00069 33.5 6.1 80 163-244 77-170 (265)
96 PF13460 NAD_binding_10: NADH( 54.0 1.5E+02 0.0032 25.9 10.1 51 164-216 52-102 (183)
97 COG1440 CelA Phosphotransferas 53.0 19 0.00041 30.3 3.7 44 165-214 41-85 (102)
98 COG1058 CinA Predicted nucleot 51.4 20 0.00043 35.1 4.1 47 164-216 52-100 (255)
99 TIGR01305 GMP_reduct_1 guanosi 48.5 1.1E+02 0.0024 31.2 9.0 105 85-211 95-220 (343)
100 PRK07107 inosine 5-monophospha 46.9 1.5E+02 0.0032 31.9 10.2 46 77-124 221-266 (502)
101 PRK15116 sulfur acceptor prote 46.2 1.5E+02 0.0033 29.1 9.4 36 85-124 30-65 (268)
102 TIGR01769 GGGP geranylgeranylg 45.7 84 0.0018 29.6 7.3 67 172-241 24-97 (205)
103 PF00478 IMPDH: IMP dehydrogen 44.8 1.2E+02 0.0025 31.2 8.6 92 100-211 108-219 (352)
104 TIGR00730 conserved hypothetic 44.5 2.2E+02 0.0048 26.1 9.7 45 167-213 91-137 (178)
105 PRK01438 murD UDP-N-acetylmura 43.2 81 0.0017 32.9 7.5 31 85-120 16-46 (480)
106 PRK04169 geranylgeranylglycery 43.0 89 0.0019 30.1 7.1 69 171-242 31-105 (232)
107 PRK01368 murD UDP-N-acetylmura 42.9 1.2E+02 0.0026 31.8 8.8 35 170-211 61-95 (454)
108 PRK02705 murD UDP-N-acetylmura 41.6 1.3E+02 0.0027 31.2 8.6 29 87-120 2-30 (459)
109 cd02812 PcrB_like PcrB_like pr 41.1 95 0.0021 29.6 6.9 72 171-244 24-101 (219)
110 TIGR02355 moeB molybdopterin s 40.8 2.6E+02 0.0056 26.7 10.0 35 86-124 25-59 (240)
111 PTZ00314 inosine-5'-monophosph 40.6 2.1E+02 0.0047 30.5 10.3 45 78-123 220-264 (495)
112 COG0062 Uncharacterized conser 39.6 1.2E+02 0.0026 28.7 7.3 35 85-120 49-83 (203)
113 cd00288 Pyruvate_Kinase Pyruva 38.3 70 0.0015 34.1 6.1 50 161-210 226-279 (480)
114 PRK07807 inosine 5-monophospha 37.5 2.1E+02 0.0045 30.5 9.6 84 107-210 234-337 (479)
115 TIGR00612 ispG_gcpE 1-hydroxy- 37.2 1.9E+02 0.0042 29.5 8.7 94 109-226 44-141 (346)
116 PF01026 TatD_DNase: TatD rela 37.1 53 0.0011 31.4 4.7 81 161-243 72-169 (255)
117 PF01488 Shikimate_DH: Shikima 36.9 47 0.001 28.6 3.9 34 85-122 12-45 (135)
118 PRK05096 guanosine 5'-monophos 36.4 2.5E+02 0.0053 28.8 9.3 104 85-211 96-221 (346)
119 PF01408 GFO_IDH_MocA: Oxidore 35.5 64 0.0014 26.4 4.4 32 172-210 62-93 (120)
120 TIGR02356 adenyl_thiF thiazole 35.3 3.6E+02 0.0078 24.8 10.0 36 85-124 21-56 (202)
121 PRK03369 murD UDP-N-acetylmura 35.2 1.4E+02 0.003 31.5 7.9 33 171-210 69-101 (488)
122 PRK00366 ispG 4-hydroxy-3-meth 35.1 2.1E+02 0.0046 29.4 8.6 86 109-215 52-142 (360)
123 PRK09424 pntA NAD(P) transhydr 35.0 2.5E+02 0.0054 30.2 9.7 37 80-121 160-196 (509)
124 COG0771 MurD UDP-N-acetylmuram 32.7 1.5E+02 0.0032 31.4 7.4 35 168-209 65-99 (448)
125 COG0075 Serine-pyruvate aminot 32.6 3.3E+02 0.0072 28.2 9.8 106 85-211 55-169 (383)
126 COG0552 FtsY Signal recognitio 31.9 59 0.0013 33.1 4.1 106 161-273 181-291 (340)
127 PRK14106 murD UDP-N-acetylmura 31.7 1.8E+02 0.004 29.9 7.9 32 86-122 6-37 (450)
128 PF05368 NmrA: NmrA-like famil 31.3 3.7E+02 0.008 24.6 9.3 100 88-213 1-103 (233)
129 PRK05567 inosine 5'-monophosph 30.4 6.5E+02 0.014 26.7 11.9 41 80-121 209-249 (486)
130 PRK05597 molybdopterin biosynt 30.2 4.3E+02 0.0093 26.8 10.2 34 86-123 29-62 (355)
131 PRK11449 putative deoxyribonuc 30.2 1.4E+02 0.003 28.9 6.3 81 162-244 77-172 (258)
132 TIGR00518 alaDH alanine dehydr 30.0 1.7E+02 0.0037 29.9 7.2 33 84-121 166-198 (370)
133 PF11392 DUF2877: Protein of u 29.6 1.7E+02 0.0038 24.6 6.1 22 299-320 9-31 (110)
134 PRK02472 murD UDP-N-acetylmura 29.6 1.2E+02 0.0025 31.3 6.0 33 172-211 68-100 (447)
135 COG0031 CysK Cysteine synthase 29.5 90 0.0019 31.3 4.9 42 172-217 169-211 (300)
136 PTZ00300 pyruvate kinase; Prov 29.1 1.1E+02 0.0023 32.5 5.7 50 161-210 199-252 (454)
137 PRK06843 inosine 5-monophospha 28.7 4.2E+02 0.0091 27.7 9.8 45 78-123 132-176 (404)
138 cd01492 Aos1_SUMO Ubiquitin ac 28.7 4.5E+02 0.0098 24.2 9.3 36 85-124 21-56 (197)
139 PRK04308 murD UDP-N-acetylmura 28.5 1.9E+02 0.004 29.9 7.3 35 171-212 66-100 (445)
140 PF12242 Eno-Rase_NADH_b: NAD( 28.5 29 0.00063 27.8 1.0 31 87-119 41-71 (78)
141 TIGR00725 conserved hypothetic 27.7 4.4E+02 0.0096 23.5 9.3 38 169-213 88-126 (159)
142 KOG2851 Eukaryotic-type DNA pr 27.2 21 0.00045 36.5 -0.0 25 362-386 163-187 (412)
143 KOG1205 Predicted dehydrogenas 27.2 2.7E+02 0.0059 27.6 7.8 87 85-184 11-103 (282)
144 PRK05826 pyruvate kinase; Prov 26.5 1.3E+02 0.0029 31.9 5.9 50 161-210 226-279 (465)
145 KOG2947 Carbohydrate kinase [C 26.4 73 0.0016 31.2 3.5 29 297-325 255-284 (308)
146 PRK05690 molybdopterin biosynt 26.3 5.3E+02 0.011 24.6 9.6 36 84-123 31-66 (245)
147 TIGR00561 pntA NAD(P) transhyd 26.2 2.7E+02 0.0058 30.0 8.1 37 81-122 160-196 (511)
148 PLN02623 pyruvate kinase 26.2 1.4E+02 0.0031 32.6 6.1 48 161-208 330-381 (581)
149 KOG2585 Uncharacterized conser 25.9 1.9E+02 0.0042 30.5 6.7 53 68-120 247-302 (453)
150 PRK00141 murD UDP-N-acetylmura 25.8 2E+02 0.0043 30.3 7.0 34 170-210 72-105 (473)
151 PRK09206 pyruvate kinase; Prov 25.7 1.4E+02 0.003 31.9 5.8 50 161-210 225-278 (470)
152 PF11760 CbiG_N: Cobalamin syn 25.4 1.9E+02 0.0041 23.5 5.2 49 165-217 4-53 (84)
153 PRK06487 glycerate dehydrogena 24.5 6.9E+02 0.015 24.8 10.3 61 172-236 224-286 (317)
154 PRK06354 pyruvate kinase; Prov 24.5 1.5E+02 0.0032 32.6 5.8 48 161-208 231-282 (590)
155 COG0002 ArgC Acetylglutamate s 23.7 3.6E+02 0.0079 27.6 8.1 104 86-217 3-107 (349)
156 PRK03803 murD UDP-N-acetylmura 23.7 4.5E+02 0.0098 27.1 9.2 34 171-211 67-100 (448)
157 PRK08762 molybdopterin biosynt 23.7 6.5E+02 0.014 25.5 10.2 36 83-122 133-168 (376)
158 COG1879 RbsB ABC-type sugar tr 23.6 1.6E+02 0.0035 28.5 5.6 42 164-211 82-125 (322)
159 TIGR00877 purD phosphoribosyla 23.4 3.7E+02 0.0079 27.5 8.4 31 87-122 2-32 (423)
160 PRK10886 DnaA initiator-associ 23.3 3.2E+02 0.007 25.4 7.2 41 164-208 101-141 (196)
161 PRK10867 signal recognition pa 23.1 7.5E+02 0.016 26.0 10.6 19 347-365 367-385 (433)
162 PF01884 PcrB: PcrB family; I 22.9 1.1E+02 0.0025 29.4 4.1 42 171-216 31-72 (230)
163 TIGR03590 PseG pseudaminic aci 22.8 5E+02 0.011 25.1 8.8 36 164-211 233-268 (279)
164 COG2200 Rtn c-di-GMP phosphodi 22.7 2.8E+02 0.0061 26.6 6.9 79 191-277 137-215 (256)
165 cd02201 FtsZ_type1 FtsZ is a G 22.4 7.4E+02 0.016 24.4 10.0 26 158-183 70-95 (304)
166 TIGR00200 cinA_nterm competenc 22.2 5.4E+02 0.012 26.9 9.3 45 165-213 52-96 (413)
167 TIGR00715 precor6x_red precorr 22.2 7.2E+02 0.016 24.1 10.1 24 87-114 2-25 (256)
168 KOG1224 Para-aminobenzoate (PA 22.1 1.9E+02 0.004 31.6 5.8 33 172-206 64-98 (767)
169 PRK07688 thiamine/molybdopteri 21.6 7.5E+02 0.016 24.9 10.0 39 166-210 110-148 (339)
170 COG2022 ThiG Uncharacterized e 21.5 1E+02 0.0022 30.1 3.4 28 178-211 162-190 (262)
171 cd05565 PTS_IIB_lactose PTS_II 21.1 95 0.0021 25.8 2.8 44 165-214 40-84 (99)
172 cd01310 TatD_DNAse TatD like p 21.0 2.3E+02 0.005 26.0 5.9 49 163-211 74-129 (251)
173 PRK08328 hypothetical protein; 20.9 7.1E+02 0.015 23.4 9.3 33 87-123 29-61 (231)
174 PRK04690 murD UDP-N-acetylmura 20.3 3.9E+02 0.0085 28.0 7.9 35 170-211 67-101 (468)
175 cd01948 EAL EAL domain. This d 20.2 2.8E+02 0.0061 25.1 6.2 78 192-277 134-211 (240)
176 PRK12446 undecaprenyldiphospho 20.1 6E+02 0.013 25.5 9.0 36 165-211 245-280 (352)
No 1
>PRK10565 putative carbohydrate kinase; Provisional
Probab=100.00 E-value=1.7e-43 Score=369.99 Aligned_cols=274 Identities=27% Similarity=0.360 Sum_probs=208.5
Q ss_pred ccccccccchhhhhhcceEEEeeeCCCccccCcccccccccccccccccChhhHHHhhCCCCCCCCCCCCCCeEEEEecC
Q 016016 15 GSVKNCMLASSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGGC 94 (396)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~r~~~~hKg~~G~vlvIgGS 94 (396)
...|.+.+..++.-.-|++++..||++.+... .....+.+++++ ++.++|+|++++|||++|++++||||
T Consensus 194 ~~~K~g~~~~~~~~~~G~v~v~diGip~~~~~---------~~~~~~~~~~~~-~~~~lp~r~~~shKg~~G~vliigGs 263 (508)
T PRK10565 194 IALKPGLLTGKARDVVGQLHFDSLGLDSWLAG---------QEAPIQRFDAEQ-LSQWLKPRRPTSHKGDHGRLLIIGGD 263 (508)
T ss_pred cccCCcccccchhhheeeEEEecCCCchhhhc---------cCccceecCHHH-HHhhcCCCCccCCCCCCCeEEEEECC
Confidence 33444444444455668999999998754311 011112356665 46788999999999999999999999
Q ss_pred CCCCCcHHHHHHHHhhcCCCEEEEEecCcchhhhcccCCceeeecccccccccCCCchhhhhhcchhHHHHHHHHhccCC
Q 016016 95 REYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFD 174 (396)
Q Consensus 95 d~~~GA~ilAalaAlr~GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~~~ev~~~~~~~d 174 (396)
.+|+||++||+++|+|+|+|+|++++++.....+..+.||+|+.++.. ++++++++++|
T Consensus 264 ~~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~~~~~~~Pe~~~~~~~~---------------------~~~~~~~~~~~ 322 (508)
T PRK10565 264 HGTAGAIRMAGEAALRSGAGLVRVLTRSENIAPLLTARPELMVHELTP---------------------DSLEESLEWAD 322 (508)
T ss_pred CCCccHHHHHHHHHHHhCCCeEEEEeChhhHHHHhhcCceeEEecCCH---------------------hHHHHHhhcCC
Confidence 999999999999999999999999999988888999999999976421 34566667899
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcccccCCCCCCc
Q 016016 175 CLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRD 254 (396)
Q Consensus 175 alvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~~~~~~~~d 254 (396)
+++||||++++++..+.+ +.+++.++|+||||||+.++..... . ..++|||||.+|+++|++.... .+ +.+
T Consensus 323 a~viGpGlg~~~~~~~~~----~~~~~~~~P~VLDAdaL~ll~~~~~-~--~~~~VLTPh~gE~~rL~~~~~~-~v-~~~ 393 (508)
T PRK10565 323 VVVIGPGLGQQEWGKKAL----QKVENFRKPMLWDADALNLLAINPD-K--RHNRVITPHPGEAARLLGCSVA-EI-ESD 393 (508)
T ss_pred EEEEeCCCCCCHHHHHHH----HHHHhcCCCEEEEchHHHHHhhCcc-c--cCCeEECCCHHHHHHHhCCChh-hh-hhh
Confidence 999999999887654444 3334678899999999988764221 1 1268999999999999984310 11 136
Q ss_pred HHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC-CCCCchHHHHHHHHHHHhccCC-hHHHHHHHhhh
Q 016016 255 APELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARA-KGKATTRLYYN 329 (396)
Q Consensus 255 ~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~-~t~GTGDvLAGiIAa~LA~g~~-l~~A~~~~y~~ 329 (396)
+.+.++++++++++ +|++||.+|+|+++++..+++..|++. +++||||+|||+|++|++++.+ +++|+.++|+|
T Consensus 394 ~~~~a~~~a~~~~~-~vvlKG~~~iI~~~~~~~~~~~~G~~~ma~~GsGDvLaGiIaalla~g~~~~~Aa~~a~~lh 469 (508)
T PRK10565 394 RLLSARRLVKRYGG-VVVLKGAGTVIAAEPDALAIIDVGNAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGCVAH 469 (508)
T ss_pred HHHHHHHHHHHhCC-EEEEeCCCcEEEcCCceEEEECCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77889999999987 466799999999865445566789998 5899999999999999999964 33333344444
No 2
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=345.53 Aligned_cols=243 Identities=34% Similarity=0.541 Sum_probs=198.1
Q ss_pred cChhhHHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchhhhcccCCceeeecccc
Q 016016 63 ADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILE 142 (396)
Q Consensus 63 ~~~~~~~~~~lp~r~~~~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~ 142 (396)
+.+.+ +...+|+|.+++|||++|++++||||..|+||+++++++|+++|+|+|++.++.++...+.++.||+|++++..
T Consensus 11 ~~~~~-~~~~~~~r~~~~HKg~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~~~s~~Pe~mv~~~~~ 89 (284)
T COG0063 11 VGPAD-LIAWLPPRDPDSHKGDYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASALKSYLPELMVIEVEG 89 (284)
T ss_pred CCHHH-hhccCCCCCccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhhHhhcCcceeEeeccc
Confidence 34444 35558899999999999999999999999999999999999999999999999997778999999999998653
Q ss_pred cccccCCCchhhhhhcchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhh
Q 016016 143 ESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDL 222 (396)
Q Consensus 143 ~~~~~~~~~~~~~~~is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~l 222 (396)
.. ......+.+++|+++||||++.+++..+.+.++++... +|+|||+|+++++....++
T Consensus 90 ~~------------------~~~~~~~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~---~p~ViDADaL~~la~~~~~ 148 (284)
T COG0063 90 KK------------------LLEERELVERADAVVIGPGLGRDAEGQEALKELLSSDL---KPLVLDADALNLLAELPDL 148 (284)
T ss_pred ch------------------hhHHhhhhccCCEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEeCcHHHHHHhCccc
Confidence 21 01111345789999999999999988888877764321 8999999999977654444
Q ss_pred hcCCCCeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC-CCCCc
Q 016016 223 VSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQ 301 (396)
Q Consensus 223 l~~~~~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~-~t~GT 301 (396)
.. ....|+|||++||++|++.+. +..+.+..++++++++++++ +|++||..|+|+++++..++|..|+++ .++||
T Consensus 149 ~~-~~~~VlTPH~gEf~rL~g~~~--~~~~~~r~~~a~~~a~~~~~-vvVLKG~~tvI~~~~g~~~~n~~G~~~ma~GGt 224 (284)
T COG0063 149 LD-ERKVVLTPHPGEFARLLGTEV--DEIEVDRLEAARELAAKYGA-VVVLKGAVTVIADPDGEVFVNPTGNPGMATGGT 224 (284)
T ss_pred cc-CCcEEECCCHHHHHHhcCCcc--cccccchHHHHHHHHHHcCC-EEEEeCCCCEEEcCCCcEEEcCCCCHHhccCcc
Confidence 33 223899999999999998531 11235789999999999998 467799999999988555677899998 59999
Q ss_pred hHHHHHHHHHHHhcc--CChHHHHHHHhhhhh
Q 016016 302 GDILSGSVAVFLSWA--RAKGKATTRLYYNLS 331 (396)
Q Consensus 302 GDvLAGiIAa~LA~g--~~l~~A~~~~y~~~~ 331 (396)
||+|||+|++|||++ ..+++|+.++|+|..
T Consensus 225 GDvLaGii~alLAq~~~~~~~Aa~~g~~~h~~ 256 (284)
T COG0063 225 GDVLAGIIGALLAQGPADPLEAAAAGAWLHGR 256 (284)
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999 666777777777753
No 3
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-42 Score=323.23 Aligned_cols=273 Identities=45% Similarity=0.775 Sum_probs=220.5
Q ss_pred HHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchhhhcccCCceeeeccccccccc
Q 016016 68 VMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNI 147 (396)
Q Consensus 68 ~~~~~lp~r~~~~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~~~~~~ 147 (396)
++++.+|+.-++-|||+.|+|+|||||..|+|||++|+++|++.|++++++++..+...+|++++||+|+++++.+.
T Consensus 13 ~vk~~iP~L~~~kHKGq~GrvgViGGc~eYTGAPYFaa~sa~~~GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~~--- 89 (306)
T KOG3974|consen 13 LVKRIIPPLLSNKHKGQSGRVGVIGGCLEYTGAPYFAAISALRVGADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQE--- 89 (306)
T ss_pred HHHhhcCCccCcccCCCccceEEEcccccccCccHHHHHHHHHhccceeeeeechhHHHHHhhcCCceeecccccCC---
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCchhhhhhcchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchh-hhcCC
Q 016016 148 SGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSID-LVSGY 226 (396)
Q Consensus 148 ~~~~~~~~~~is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~-ll~~~ 226 (396)
.+.+.++.|+.+.+++|||||+|+++...+.+.++++.++++++|+|+|+||+.+.....+ ++..+
T Consensus 90 -------------~av~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~ 156 (306)
T KOG3974|consen 90 -------------NAVDIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGY 156 (306)
T ss_pred -------------chHhHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccC
Confidence 1345778899999999999999999999999999999999999999999999999987765 66667
Q ss_pred CCeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceE-EEcCCeEEEEeccCCCCCCCCchHHH
Q 016016 227 PLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDL-ISDGEIAKSVSIYGSPRRCGGQGDIL 305 (396)
Q Consensus 227 ~~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~dv-I~d~~~~~~i~~~G~~~~t~GTGDvL 305 (396)
+..|+|||.-||++|.+... +..|.......|+.+...++|+.||..|. ++.+.++......|+.+.++|.||+|
T Consensus 157 ~~viLTPNvvEFkRLcd~~l----~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ils~~~ev~~~s~eGs~kRcGGQGDiL 232 (306)
T KOG3974|consen 157 PKVILTPNVVEFKRLCDAEL----DKVDSHSQMQHLAAELMNVTVVQKGESDKILSPDSEVRVCSTEGSLKRCGGQGDIL 232 (306)
T ss_pred ceeeeCCcHHHHHHHHHHhh----ccccchHHHHHHHHHhcCeEEEEecCCceeeCCCCeeEEccCCCCccccCCCcchh
Confidence 78999999999999998642 22344566777877766678899999994 55555565554578888999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHhhhhhhHhhhhhHhhHHHHHhHHHHHHHHHHHhhhhccC
Q 016016 306 SGSVAVFLSWARAKGKATTRLYYNLSFKLGRQLFCFLSLISCLATYSFLMRLLQSDESNG 365 (396)
Q Consensus 306 AGiIAa~LA~g~~l~~A~~~~y~~~~~~aai~~~~~~~~a~~~a~~~~~~~~~~~~~~~~ 365 (396)
||.||.|++|.+. +..-+.+..|.++++. +++..-+...+|..-+|+++.-+.++
T Consensus 233 aGsla~fl~w~k~----~~~e~~~~~~~a~~a~-s~~vr~a~rlafk~~gR~ll~~d~~~ 287 (306)
T KOG3974|consen 233 AGSLATFLSWAKL----LSGEQDSAAFLAAVAG-SIMVRRAGRLAFKRHGRSLLTSDIPE 287 (306)
T ss_pred hhHHHHHHHHHHh----ccCCccchhhhhhhhh-HHHHHHHHHhhhhhcCcccccchhHH
Confidence 9999999999751 1111112234555554 44444444556777777777655443
No 4
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=100.00 E-value=3.6e-40 Score=315.23 Aligned_cols=216 Identities=34% Similarity=0.533 Sum_probs=169.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchhhhcccCCceeeecccccccccCCCchhhhhhcchhHHHHHH
Q 016016 88 IAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVD 167 (396)
Q Consensus 88 vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~~~ev~ 167 (396)
|++||||..|+||+++|+.+|+|+|+|+||++++++....+....||+|+.++.++ +.. ++.
T Consensus 1 VlvigGS~~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~~~Pe~m~~~~~~~-----------------~~~-~~~ 62 (242)
T PF01256_consen 1 VLVIGGSEGYPGAAILAARAALRSGAGLVTLATPESIAPVIASYSPEAMVSPLPSD-----------------EDV-EIL 62 (242)
T ss_dssp EEEEE-BTSSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHHHTTTSEEEETTHC-----------------CHH-HHH
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHhCCceeEEecccch-----------------hhh-hhH
Confidence 79999999999999999999999999999999999999999999999999886421 112 456
Q ss_pred HHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhccccc
Q 016016 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLN 247 (396)
Q Consensus 168 ~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~~ 247 (396)
++.+++|+++||||++++++..+.+..+++ ...|+|||+|++.++.... ....++.|||||++||+||++....
T Consensus 63 ~~~~~~~av~iGPGlg~~~~~~~~~~~~~~----~~~p~VlDADaL~~l~~~~--~~~~~~~IlTPH~gE~~rL~~~~~~ 136 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDEETEELLEELLE----SDKPLVLDADALNLLAENP--KKRNAPVILTPHPGEFARLLGKSVE 136 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSHHHHHHHHHHHH----HCSTEEEECHHHHCHHHCC--CCSSSCEEEE-BHHHHHHHHTTTCH
T ss_pred hhhccCCEEEeecCCCCchhhHHHHHHHHh----hcceEEEehHHHHHHHhcc--ccCCCCEEECCCHHHHHHHhCCccc
Confidence 667899999999999999887776666553 4679999999999887432 2223579999999999999986521
Q ss_pred CCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC-CCCCchHHHHHHHHHHHhccCC-hHHHHHH
Q 016016 248 CEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARA-KGKATTR 325 (396)
Q Consensus 248 ~~~~~~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~-~t~GTGDvLAGiIAa~LA~g~~-l~~A~~~ 325 (396)
..+++.+.++++++++++ +|++||..|+|+++++..+++..|+|. +++||||+|||+|++|++++.+ +++|+.+
T Consensus 137 ---~~~~~~~~a~~~a~~~~~-~vvLKG~~t~I~~p~~~~~~n~~gn~~la~gGsGDvLaGii~~llaq~~~~~~Aa~~a 212 (242)
T PF01256_consen 137 ---IQEDRIEAAREFAKEYGA-VVVLKGAVTIIASPGGRVYVNPTGNPGLATGGSGDVLAGIIAGLLAQGYDPFEAACLA 212 (242)
T ss_dssp ---HCCSHHHHHHHHHHHHTS-EEEEESTSSEEEEETSEEEEE----GGGSSTTHHHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred ---chhhHHHHHHHHHhhcCc-EEEEeCCCcEEEecCcceeEeCCCCCCCCCCCcccHHHHHHHHHHHccCCHHHHHHHH
Confidence 246899999999999997 577899999999855555677889988 6999999999999999999985 4455567
Q ss_pred Hhhhhh
Q 016016 326 LYYNLS 331 (396)
Q Consensus 326 ~y~~~~ 331 (396)
+|+|..
T Consensus 213 v~lHg~ 218 (242)
T PF01256_consen 213 VYLHGR 218 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888853
No 5
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=100.00 E-value=9.7e-38 Score=302.44 Aligned_cols=233 Identities=33% Similarity=0.513 Sum_probs=186.1
Q ss_pred HHhhCCCCCCCCCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchhhhcccCCceeeecccccccccC
Q 016016 69 MREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNIS 148 (396)
Q Consensus 69 ~~~~lp~r~~~~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~~~~~~~ 148 (396)
++..+|+|++++|||++|++|+||||++|+||+++++++++++|+++||+.+++++...+....||++..++..
T Consensus 8 ~~~~~p~~~~~~~K~~~G~vliiaGs~~~~GA~ila~l~~~~~g~~~v~~~~~~~~~~~i~~~~pe~~~~~~~~------ 81 (272)
T TIGR00196 8 DLLTLPLRDPNSHKGQYGRVLIIGGSDDYSGAPLLAALAALRAGAGLVTVAAPENVITLINSVSPELIVHRLGW------ 81 (272)
T ss_pred HHHhCCCCCCCCCCCCCCeEEEEeCCCCCCcHHHHHHHHHHHhCCCeEEEEEchhhHHHHhhcCCEEEEecchh------
Confidence 46678999999999999999999999999999999999999999999999999987777888999999977521
Q ss_pred CCchhhhhhcchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCC
Q 016016 149 GLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPL 228 (396)
Q Consensus 149 ~~~~~~~~~is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~ 228 (396)
..++++++++++|+++||+|++++.. +.++++.+++.++|+|+||+|..+.... .....++
T Consensus 82 -------------~~~~~~~~~~~~davvig~Gl~~~~~----~~~l~~~~~~~~~pvVlDa~g~~l~~~~--~~~~~~~ 142 (272)
T TIGR00196 82 -------------KVDEDEELLERYDVVVIGPGLGQDPS----FKKAVEEVLELDKPVVLDADALNLLTYD--KPKREGE 142 (272)
T ss_pred -------------hHHHHHhhhccCCEEEEcCCCCCCHH----HHHHHHHHHhcCCCEEEEhHHHHHHhhc--ccccCCC
Confidence 23566777789999999999987654 4445555566789999999988765432 1112357
Q ss_pred eeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC-CCCCchHHHHH
Q 016016 229 AVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGDILSG 307 (396)
Q Consensus 229 ~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~-~t~GTGDvLAG 307 (396)
+|||||..|+++|+|... .+.+++.++++++++++++ +|++||.++++++++..++++..+.+. +++|+||+|+|
T Consensus 143 ~vItPN~~El~~L~g~~~---~~~~~~~~aa~~l~~~~~~-vVv~kG~~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag 218 (272)
T TIGR00196 143 VILTPHPGEFKRLLGLVN---EIQGDRLEAAQDIAQKLQA-VVVLKGAADVIAAPDGDLWINKTGNAALAKGGTGDVLAG 218 (272)
T ss_pred EEECCCHHHHHHHhCCch---hhhhhHHHHHHHHHHHhCC-EEEEcCCCCEEEcCCCeEEEECCCCCccCCCCchHHHHH
Confidence 999999999999998641 1235788999999998886 677899999988764333354566665 69999999999
Q ss_pred HHHHHHhccCChHHHHH-HHhhhh
Q 016016 308 SVAVFLSWARAKGKATT-RLYYNL 330 (396)
Q Consensus 308 iIAa~LA~g~~l~~A~~-~~y~~~ 330 (396)
+|++++++|.++.+|+. ++|.|.
T Consensus 219 ~iaa~la~g~~~~~A~~~a~~~~~ 242 (272)
T TIGR00196 219 LIGGLLAQNLDPFDAACNAAFAHG 242 (272)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999988665554 556554
No 6
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=100.00 E-value=6.2e-38 Score=300.00 Aligned_cols=227 Identities=40% Similarity=0.660 Sum_probs=176.5
Q ss_pred CCCCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchhhhcccCCceeeecccccccccCCCchhhhhh
Q 016016 78 PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRC 157 (396)
Q Consensus 78 ~~~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~ 157 (396)
+++|||++|++++||||++|+||+++|+++|++.|+|+||++|+++....+....||+|+.++..+
T Consensus 1 ~~~hK~~~g~vl~i~Gs~~~~GA~~la~~~a~~~G~g~vt~~~~~~~~~~~~~~~pe~i~~~~~~~-------------- 66 (254)
T cd01171 1 PDSHKGSRGRVLVIGGSRGYTGAAYLAALAALRAGAGLVTVATPPEAAAVIKSYSPELMVHPLLET-------------- 66 (254)
T ss_pred CCCCCcCCCeEEEEeCCCCCccHHHHHHHHHHHHccCEEEEEECHhhHHHHHhcCceeeEeccccc--------------
Confidence 468999999999999999999999999999999999999999999988888899999999875321
Q ss_pred cchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHH
Q 016016 158 ISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNE 237 (396)
Q Consensus 158 is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E 237 (396)
..+++.....++|+++||+|++.++. +..+++.+++.++|+|||||++.++...........++|||||..|
T Consensus 67 ----~~~~~~~~~~~~d~v~ig~gl~~~~~----~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~~~~~~~~~iltPn~~E 138 (254)
T cd01171 67 ----DIEELLELLERADAVVIGPGLGRDEE----AAEILEKALAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGE 138 (254)
T ss_pred ----chHHHHhhhccCCEEEEecCCCCCHH----HHHHHHHHHhcCCCEEEEcHHHHHhhcChhhhccCCCEEECCCHHH
Confidence 11345556678999999999997643 3344444556789999999998776543211111247999999999
Q ss_pred HHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC-CCCCchHHHHHHHHHHHhcc
Q 016016 238 YKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWA 316 (396)
Q Consensus 238 ~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~-~t~GTGDvLAGiIAa~LA~g 316 (396)
+++|+|.+.. ..+.++.+.+++++++++. +|++||.+++++++++.++++..+.+. +++||||+|+|+|++++++|
T Consensus 139 ~~~L~g~~~~--~~~~~~~~~a~~l~~~~~~-~vvlkG~~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g 215 (254)
T cd01171 139 FARLLGALVE--EIQADRLAAAREAAAKLGA-TVVLKGAVTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQG 215 (254)
T ss_pred HHHHhCCChh--hhhhHHHHHHHHHHHHcCc-EEEEcCCCCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHcC
Confidence 9999986521 1123567889999988765 667899999999865545565556655 69999999999999999999
Q ss_pred CChHHHHH-HHhhh
Q 016016 317 RAKGKATT-RLYYN 329 (396)
Q Consensus 317 ~~l~~A~~-~~y~~ 329 (396)
.++.+|+. ++|.|
T Consensus 216 ~~~~eA~~~A~~~~ 229 (254)
T cd01171 216 LSPLEAAALAVYLH 229 (254)
T ss_pred CCHHHHHHHHHHHH
Confidence 98776655 34433
No 7
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.97 E-value=2e-30 Score=248.38 Aligned_cols=206 Identities=22% Similarity=0.318 Sum_probs=154.7
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhh---c-CCCEEEEEecCcchhh--hcccCCceeeecccccccccCCCchhhhhhc
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALK---I-GADLSHVFCTKDAAPV--IKSYSPELIVHPILEESYNISGLEDEERRCI 158 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr---~-GaglVtv~t~~~~~~~--i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~i 158 (396)
..++|+|+|||+.+||||+||+..+. + |+..+|+.|.|+...+ +....||.+.
T Consensus 3 ~~~~LtIAGsD~sGGAGIqADLKTf~a~gvyg~saITaltaQNt~gV~~v~~v~~~~v~--------------------- 61 (263)
T COG0351 3 LPVVLTIAGSDSSGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVHGVHPVPPEFVE--------------------- 61 (263)
T ss_pred CceEEEEeccCCCccHHHHHHHHHHHhcCCccceEEEEEEEeecCceeeEEeCCHHHHH---------------------
Confidence 46899999999999999999996554 4 8899999999998874 4444455443
Q ss_pred chhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC-CCEEEecCcc-----cccccc-hhhhc-C-CC-C
Q 016016 159 SSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN-VPIVIDGDGL-----FLVTNS-IDLVS-G-YP-L 228 (396)
Q Consensus 159 s~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~-~PvVLDpdgl-----~ll~~~-~~ll~-~-~~-~ 228 (396)
+|++..+++.++-++++||+.+.++++.+.+.++. .+ .|+|+|||.. .++... .+.++ + +| .
T Consensus 62 -----~Ql~av~~D~~v~avKtGML~~~eiie~va~~l~~---~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a 133 (263)
T COG0351 62 -----AQLDAVFSDIPVDAVKTGMLGSAEIIEVVAEKLKK---YGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLA 133 (263)
T ss_pred -----HHHHHHhhcCCCCEEEECCcCCHHHHHHHHHHHHh---cCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccC
Confidence 47777777766666666888899988888877754 44 6899999743 344332 13333 3 45 5
Q ss_pred eeecCCHHHHHHHhcc-cccCCCC-CCcHHHHHHHHHHhhCCeEEEEcCCc------eEEEcCCeEEEEe-ccCCCCCCC
Q 016016 229 AVLTPNVNEYKRLVQK-VLNCEVN-DRDAPELLQSLAKQIGGVTILQKGKS------DLISDGEIAKSVS-IYGSPRRCG 299 (396)
Q Consensus 229 ~VITPN~~E~a~L~g~-~~~~~~~-~~d~~~~a~~La~~~g~vvVllKG~~------dvI~d~~~~~~i~-~~G~~~~t~ 299 (396)
+|||||..|++.|.|. + +. .+|+.++ .++..++|+..|++||+| |++++++..+.+. +.-...++|
T Consensus 134 ~vvTPNl~EA~~L~g~~~----i~~~~d~~~a-~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tH 208 (263)
T COG0351 134 TVVTPNLPEAEALSGLPK----IKTEEDMKEA-AKLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTH 208 (263)
T ss_pred eEecCCHHHHHHHcCCCc----cCCHHHHHHH-HHHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCC
Confidence 9999999999999995 3 33 3455555 455556888899999965 7888887666664 222223699
Q ss_pred CchHHHHHHHHHHHhccCChHHHHH
Q 016016 300 GQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 300 GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
||||+||+.|+++||+|.++++|+.
T Consensus 209 GTGCTlSaAIaa~LA~G~~l~~AV~ 233 (263)
T COG0351 209 GTGCTLSAAIAANLAKGLSLEEAVK 233 (263)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999998877
No 8
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=99.95 E-value=1.6e-27 Score=227.42 Aligned_cols=183 Identities=26% Similarity=0.343 Sum_probs=149.8
Q ss_pred HHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccch----hhhcCCCCeeecCCHHHHH
Q 016016 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI----DLVSGYPLAVLTPNVNEYK 239 (396)
Q Consensus 164 ~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~----~ll~~~~~~VITPN~~E~a 239 (396)
+|++++.+.+++++||+|++ +++.++.+...++.+++.++|+||||+|.+....|. ++++..+++||++|.+|++
T Consensus 41 ~E~~e~~~~a~al~iNiGTl-~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~ 119 (246)
T PF02110_consen 41 EEVEEFASIADALVINIGTL-TDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIA 119 (246)
T ss_dssp TTHHHHHHCTSEEEEESTTS-SHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHH
T ss_pred HHHHHHHHHcCEEEEECCCC-CHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHH
Confidence 46778888999999999998 566688999999999999999999999999888774 5665578999999999999
Q ss_pred HHhcccc---cCCCCC--CcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC--CCCCchHHHHHHHHHH
Q 016016 240 RLVQKVL---NCEVND--RDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVF 312 (396)
Q Consensus 240 ~L~g~~~---~~~~~~--~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~--~t~GTGDvLAGiIAa~ 312 (396)
.|+|... ++|..+ .+..+.+++++++|++ +|+++|+.|+|+|+++++.+ .+|+++ .++||||+|+++||+|
T Consensus 120 aLag~~~~~kGVDs~~~~~~~~~~a~~lA~k~~~-vVvvTG~~D~Isdg~~~~~i-~nG~~~l~~itGtGC~lgaliaaf 197 (246)
T PF02110_consen 120 ALAGEDSKAKGVDSGDSDEDAIEAAKQLAQKYNC-VVVVTGEVDYISDGNRVYRI-PNGSPLLSKITGTGCMLGALIAAF 197 (246)
T ss_dssp HHHTCCCCSCSSSSSCGSHHHHHHHHHHHHHTTS-EEEEESSSEEEEESSCEEEE-CSSSGGGGGSTTHHHHHHHHHHHH
T ss_pred HHhCcCCCCCCcCcCCcchHHHHHHHHHHHhcCC-EEEEecCCcEEECCCeEEEe-CCCChHhcceeccchHHHHHHHHH
Confidence 9999753 233322 2467899999999998 56789999999999998877 589998 4999999999999999
Q ss_pred HhccCChHHHHHHHhhhhhhHhhhhhHhhHHHHHhHHH------HHHHHHHHhhh
Q 016016 313 LSWARAKGKATTRLYYNLSFKLGRQLFCFLSLISCLAT------YSFLMRLLQSD 361 (396)
Q Consensus 313 LA~g~~l~~A~~~~y~~~~~~aai~~~~~~~~a~~~a~------~~~~~~~~~~~ 361 (396)
++... +.+.+++.++++|+.|+|.|+ -.+..+++|.+
T Consensus 198 ~av~~------------d~~~aa~~a~~~~~~Age~A~~~~~gpGSF~~~llD~L 240 (246)
T PF02110_consen 198 LAVAE------------DPLEAAVAAVALYGIAGELAAEKSNGPGSFRVALLDAL 240 (246)
T ss_dssp HCCCS------------SHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred Hhccc------------cchHHHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 99976 478888999999999999988 45566666655
No 9
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=99.95 E-value=3.7e-27 Score=223.48 Aligned_cols=213 Identities=20% Similarity=0.266 Sum_probs=170.2
Q ss_pred HHHHHhhcCCCEEEEEecCcchhh-----hcccCCceeeecccccccccCCCchhhhhhcchhHHHHHHHHhccCCEEEE
Q 016016 104 AAISALKIGADLSHVFCTKDAAPV-----IKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVV 178 (396)
Q Consensus 104 AalaAlr~GaglVtv~t~~~~~~~-----i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~~~ev~~~~~~~dalvI 178 (396)
..+..+|---.+|++.|..-...+ +.....-+|.. +.+|++++.+.+|+++|
T Consensus 5 ~~L~~vr~~~PLvh~iTN~Vv~nftAN~lLAlGaSP~Ma~-----------------------~~eE~~e~~kia~AL~I 61 (265)
T COG2145 5 ETLEKVREKSPLVHCITNDVVQNFTANGLLALGASPVMAD-----------------------APEEVEEFAKIADALLI 61 (265)
T ss_pred HHHHHHhhcCCceEeecchhHhhcchHHHHHcCCCchhcc-----------------------CHHHHHHHHHhccceEE
Confidence 345566666778888886433322 22222223322 22688889999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccch----hhhcCCCCeeecCCHHHHHHHhcccc---cCCC-
Q 016016 179 GPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI----DLVSGYPLAVLTPNVNEYKRLVQKVL---NCEV- 250 (396)
Q Consensus 179 G~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~----~ll~~~~~~VITPN~~E~a~L~g~~~---~~~~- 250 (396)
|+|++ +.+..+.|..+++.+++.++|+||||+|.+..+.|. ++++..++++|++|.+|+..|.|... ++|.
T Consensus 62 NIGTL-~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~~~~~kGVDa~ 140 (265)
T COG2145 62 NIGTL-SAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAALAGEAGGGKGVDAG 140 (265)
T ss_pred eeccC-ChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHHhcccccccccccc
Confidence 99998 556678999999999999999999999999988874 56665669999999999999998764 3343
Q ss_pred -CCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC--CCCCchHHHHHHHHHHHhccCChHHHHHHHh
Q 016016 251 -NDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVFLSWARAKGKATTRLY 327 (396)
Q Consensus 251 -~~~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~--~t~GTGDvLAGiIAa~LA~g~~l~~A~~~~y 327 (396)
...+..+.++.+++++++ +|+++|+.|+|+|+.+++.+ .+|+|. .++||||+|++++|+|++...+
T Consensus 141 ~~~~~~~~~a~~~A~~~~~-vvvvTG~vD~Isdg~~~~~i-~nG~pll~~ItGtGCllgav~aaF~av~~d--------- 209 (265)
T COG2145 141 DGAADAIEAAKKAAQKYGT-VVVVTGEVDYISDGTRVVVI-HNGSPLLGKITGTGCLLGAVVAAFLAVEKD--------- 209 (265)
T ss_pred cchhhHHHHHHHHHHHhCc-EEEEECCeeEEEcCCeEEEE-ECCCcHHhhhhccccHHHHHHHHHHhcCCC---------
Confidence 235789999999999997 56789999999999998877 699999 4999999999999999999984
Q ss_pred hhhhhHhhhhhHhhHHHHHhHHHHHH
Q 016016 328 YNLSFKLGRQLFCFLSLISCLATYSF 353 (396)
Q Consensus 328 ~~~~~~aai~~~~~~~~a~~~a~~~~ 353 (396)
..|.++..+.++|+.|+|+|+-+-
T Consensus 210 --~~~~A~~~A~~~~~iAge~A~~~~ 233 (265)
T COG2145 210 --PLLDAAAEACAVYGIAGELAAERA 233 (265)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 247788889999999999987654
No 10
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.95 E-value=9.4e-27 Score=230.40 Aligned_cols=218 Identities=19% Similarity=0.234 Sum_probs=150.9
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHH---hhc-CCCEEEEEecCcchhh--hcccCCceeeecccccccccCCCchhhhhhc
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISA---LKI-GADLSHVFCTKDAAPV--IKSYSPELIVHPILEESYNISGLEDEERRCI 158 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaA---lr~-GaglVtv~t~~~~~~~--i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~i 158 (396)
.+.||+|||||+.+|||++||+.. +++ |+..+|+.|.|+...+ +....||++.
T Consensus 4 ~p~VLtIAGsDpsGGAGiqADlkt~~alGv~g~sviTalTaQnt~~V~~v~~v~~~~i~--------------------- 62 (321)
T PTZ00493 4 VSNILSIAGSDSCGGAGMQADIKTAMGLGCHCCTALVVLTAQNTKEVKRIVEIEEKFIV--------------------- 62 (321)
T ss_pred CCEEEEEeeeCCCCchHHHHHHHHHHHcCCccceEEEEEEEEcCCceEEEEECCHHHHH---------------------
Confidence 468999999999999999999855 555 7899999999998775 3333333332
Q ss_pred chhHHHHHHHHhccC--CEEEEcCCCCCCHHHHHHHHHHHHHhhc---CCCCEEEecCc-----cccccc-c-hhhh-cC
Q 016016 159 SSKILAEVDKWMERF--DCLVVGPGLGRDPYLLECVSEIMKHARQ---SNVPIVIDGDG-----LFLVTN-S-IDLV-SG 225 (396)
Q Consensus 159 s~~~~~ev~~~~~~~--dalvIG~Gl~~~~~~~~~v~~~l~~a~~---~~~PvVLDpdg-----l~ll~~-~-~~ll-~~ 225 (396)
+|++.+++++ ++++| ||..+.++++.+.++++...+ .+.|+|+||+. ..++.. . .+.+ +.
T Consensus 63 -----~Ql~all~D~~i~aIKi--GmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~ 135 (321)
T PTZ00493 63 -----EQLDSIFADVTIDVVKL--GVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDL 135 (321)
T ss_pred -----HHHHHHHhCCCCCEEEE--CCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHH
Confidence 4677777755 55555 778898988999888865421 12359999973 334442 1 1212 22
Q ss_pred -CC-CeeecCCHHHHHHHhcccc-cCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------------eEEEc------
Q 016016 226 -YP-LAVLTPNVNEYKRLVQKVL-NCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------------DLISD------ 282 (396)
Q Consensus 226 -~~-~~VITPN~~E~a~L~g~~~-~~~~~~~d~~~~a~~La~~~g~vvVllKG~~--------------dvI~d------ 282 (396)
+| .+|||||..|++.|+|... ..+++.+++.++|++|.+++|+..|++||+| |++++
T Consensus 136 Llp~a~viTPN~~Ea~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~ 215 (321)
T PTZ00493 136 ICPISCIITPNFYECKVILEALDCQMDLSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSY 215 (321)
T ss_pred hhccCEEECCCHHHHHHHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCcccc
Confidence 45 6999999999999998210 0112345778899999877888889999976 34432
Q ss_pred -C--------C------eEEEEec-cCCCCCCCCchHHHHHHHHHHHhccCChHHHHH--HHhhhh
Q 016016 283 -G--------E------IAKSVSI-YGSPRRCGGQGDILSGSVAVFLSWARAKGKATT--RLYYNL 330 (396)
Q Consensus 283 -~--------~------~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~--~~y~~~ 330 (396)
+ + ..+.+.. .-...+++||||+||++|+++|++|.++++|+. +.|++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~ 281 (321)
T PTZ00493 216 PTGEKQQIDAGGVTYLYDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYN 281 (321)
T ss_pred ccccccccccccccccceEEEEEecccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 1 1222321 112235899999999999999999999998887 344443
No 11
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.94 E-value=6.8e-26 Score=217.63 Aligned_cols=171 Identities=22% Similarity=0.247 Sum_probs=132.0
Q ss_pred HHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccch----hhhcCCCCeeecCCHHHHH
Q 016016 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI----DLVSGYPLAVLTPNVNEYK 239 (396)
Q Consensus 164 ~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~----~ll~~~~~~VITPN~~E~a 239 (396)
+|+.++++.+|+++||+||+.+ +..+.+..+++.+++.++|+|||||++.....+. ++++..+++|||||..|++
T Consensus 41 ~e~~~~~~~~~al~ik~G~l~~-~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~ 119 (249)
T TIGR00694 41 EEVAELAKIAGALVINIGTLDK-ESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIA 119 (249)
T ss_pred HHHHHHHHHcCceEEeCCCCCH-HHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHH
Confidence 5788888999999999999955 6677888888877778999999999998766553 2343234699999999999
Q ss_pred HHhcccc---cCCCC--CCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC--CCCCchHHHHHHHHHH
Q 016016 240 RLVQKVL---NCEVN--DRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVF 312 (396)
Q Consensus 240 ~L~g~~~---~~~~~--~~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~--~t~GTGDvLAGiIAa~ 312 (396)
+|+|... +++.. .+++.+.++++++++++ +|++||+.|+|+++++++.+ .+|++. .++||||+|||+||+|
T Consensus 120 ~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~-~VllkG~~D~i~~~~~~~~~-~~g~~~~~~~~GtGc~LssaIaa~ 197 (249)
T TIGR00694 120 SLAGETGLMKGVDSGEGAADAIRAAQQAAQKYGT-VVVITGEVDYVSDGTSVYTI-HNGTELLGKITGSGCLLGSVVAAF 197 (249)
T ss_pred HHhCCCCCCCCcCCccchHHHHHHHHHHHHHhCC-EEEEECCCcEEEeCCEEEEE-CCCChHHhCCccchHHHHHHHHHH
Confidence 9998541 12221 24678899999999887 67889999999998887655 467765 3699999999999999
Q ss_pred HhccCChHHHHHHHhhhhhhHhhhhhHhhHHHHHhHH
Q 016016 313 LSWARAKGKATTRLYYNLSFKLGRQLFCFLSLISCLA 349 (396)
Q Consensus 313 LA~g~~l~~A~~~~y~~~~~~aai~~~~~~~~a~~~a 349 (396)
+|+|.++. .+++.|..+++.|++.|
T Consensus 198 LA~g~~~~------------~A~~~A~~~~~~a~~~a 222 (249)
T TIGR00694 198 CAVEEDPL------------DAAISACLLYKIAGELA 222 (249)
T ss_pred HhcCCCHH------------HHHHHHHHHHHHHHHHH
Confidence 99998644 34445555666666654
No 12
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.93 E-value=5.2e-24 Score=206.13 Aligned_cols=172 Identities=24% Similarity=0.328 Sum_probs=132.8
Q ss_pred HHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchh----hhcCCCCeeecCCHHHHH
Q 016016 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSID----LVSGYPLAVLTPNVNEYK 239 (396)
Q Consensus 164 ~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~----ll~~~~~~VITPN~~E~a 239 (396)
+++.+++..+|+++||+|++.+ +..+.+..+++.+++.++|+|||||++.....+.+ +++..+++|||||..|++
T Consensus 46 ~e~~~~~~~~~alvi~~G~l~~-~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~ 124 (263)
T PRK09355 46 EEAEEMAKIAGALVINIGTLTE-ERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIA 124 (263)
T ss_pred HHHHHHHHhcCceEEeCCCCCH-HHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHH
Confidence 5777888899999999999954 44556666666677789999999999987665532 333335699999999999
Q ss_pred HHhcccc---cCCCC--CCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC--CCCCchHHHHHHHHHH
Q 016016 240 RLVQKVL---NCEVN--DRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVF 312 (396)
Q Consensus 240 ~L~g~~~---~~~~~--~~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~--~t~GTGDvLAGiIAa~ 312 (396)
+|+|... +.+.. ..++.+.++++++++++ +|++||.+|+|+++++.+.+. +|.+. .++||||+|+|+||++
T Consensus 125 ~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~~-~VvvkG~~d~I~~~~~~~~~~-~g~~~~~~v~GtGc~L~~~iaa~ 202 (263)
T PRK09355 125 ALAGEAAETKGVDSTDGSADAVEIAKAAAKKYGT-VVVVTGEVDYITDGERVVSVH-NGHPLMTKVTGTGCLLSAVVAAF 202 (263)
T ss_pred HHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhCC-EEEEECCCcEEEeCCEEEEEe-CCCcccCCcccccHHHHHHHHHH
Confidence 9998642 11211 23678899999999887 578899999999988876664 67765 4699999999999999
Q ss_pred HhccCChHHHHHHHhhhhhhHhhhhhHhhHHHHHhHHH
Q 016016 313 LSWARAKGKATTRLYYNLSFKLGRQLFCFLSLISCLAT 350 (396)
Q Consensus 313 LA~g~~l~~A~~~~y~~~~~~aai~~~~~~~~a~~~a~ 350 (396)
+|+|.+ .+.++..|..+++.|++.|+
T Consensus 203 lA~g~~------------~~~A~~~A~~~~~~a~~~a~ 228 (263)
T PRK09355 203 AAVEKD------------YLEAAAAACAVYGIAGELAA 228 (263)
T ss_pred HhcCCC------------HHHHHHHHHHHHHHHHHHHH
Confidence 999985 34455666777777777765
No 13
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.92 E-value=3e-24 Score=214.25 Aligned_cols=218 Identities=19% Similarity=0.288 Sum_probs=159.0
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCcHHHHHH---HHhhc-CCCEEEEEecCcchhh--hcccCCceeeecccccccccCCC
Q 016016 77 DPSKHKGQAGKIAVIGGCREYTGAPYFAAI---SALKI-GADLSHVFCTKDAAPV--IKSYSPELIVHPILEESYNISGL 150 (396)
Q Consensus 77 ~~~~hKg~~G~vlvIgGSd~~~GA~ilAal---aAlr~-GaglVtv~t~~~~~~~--i~~~~PE~~~~~~~~~~~~~~~~ 150 (396)
.....+...+.+++|+|||+.+|||++||+ .|.++ |...+|+.|.|+...+ +...+|+.+.
T Consensus 15 ~t~~~~~~lPt~LTIAGSDcSGGAGIqADlKv~TAh~vYgMS~iTaltaQn~~gV~sv~~lpp~~V~------------- 81 (523)
T KOG2598|consen 15 LTTASNRKLPTVLTIAGSDCSGGAGIQADLKVMTAHGVYGMSVITALTAQNTVGVYSVHLLPPSFVS------------- 81 (523)
T ss_pred hhhhhhccCCeeEEEecCCCCCcccchhhhhhhhhhccchhhhhhhhhccCCccceeeccCCHHHHH-------------
Confidence 344556678999999999999999999998 55666 8899999999998775 4444555543
Q ss_pred chhhhhhcchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccc-----cc-hhhh-
Q 016016 151 EDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVT-----NS-IDLV- 223 (396)
Q Consensus 151 ~~~~~~~is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~-----~~-~~ll- 223 (396)
+|++..+.+..+=||.+||+.+++++..+.+.++.. +-..+|+||+-..... .. ..++
T Consensus 82 -------------qqidacL~Di~C~VvKTGML~~~~I~~vi~q~l~~~--~~~klVvDPVivatsG~~l~~~divsl~~ 146 (523)
T KOG2598|consen 82 -------------QQIDACLSDIKCDVVKTGMLPSPEIVKVIEQSLQKF--NIPKLVVDPVIVATSGSSLAGKDIVSLFI 146 (523)
T ss_pred -------------HHHHHHhhcCcccEEeecCcCchHHHHHHHHHHHhh--cCcceeecceEEeccCCcccCCccHHHHH
Confidence 467777888888888889999999888888887653 2346999997543221 11 1222
Q ss_pred cC-CC-CeeecCCHHHHHHHhcccccCCCCC----CcHHHHHHHHHHhhCCeEEEEcCCc-------------------e
Q 016016 224 SG-YP-LAVLTPNVNEYKRLVQKVLNCEVND----RDAPELLQSLAKQIGGVTILQKGKS-------------------D 278 (396)
Q Consensus 224 ~~-~~-~~VITPN~~E~a~L~g~~~~~~~~~----~d~~~~a~~La~~~g~vvVllKG~~-------------------d 278 (396)
++ +| .+|+|||..|+..|++... -++.. .|+...++++. +.|+..|++||++ |
T Consensus 147 e~l~P~adiltPNI~Ea~~Ll~~~~-~~~~~i~~v~di~~~~~~ih-k~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~D 224 (523)
T KOG2598|consen 147 EELLPFADILTPNIPEAFILLKKEK-REISKIQSVFDIAKDAAKIH-KLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVD 224 (523)
T ss_pred HHhhhhHHHhCCChHHHHHHHhhcc-cCCcccccHHHHHHHHHHHH-hcCcceEEEeCCCcCccccccccCcccCCceEE
Confidence 23 35 4899999999999998521 11221 24445555554 4777789999975 5
Q ss_pred EEEcCCeEEEEec-cCCCCCCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 279 LISDGEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 279 vI~d~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
+++++++++.+.. .-+.+.+|||||+||++||++||+|.++..|+.
T Consensus 225 vlydG~~F~~f~~~~~~t~~tHGtgCtLaSAIASnLA~g~sl~qAv~ 271 (523)
T KOG2598|consen 225 VLYDGKEFYIFKSPYLATKHTHGTGCTLASAIASNLARGYSLLQAVQ 271 (523)
T ss_pred EEEecceEEEecccccccccccCccchHHHHHHHHHhhcCCHHHHHH
Confidence 7788988877741 122336999999999999999999999886655
No 14
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.91 E-value=1.7e-23 Score=200.77 Aligned_cols=204 Identities=20% Similarity=0.302 Sum_probs=141.4
Q ss_pred EEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcchhhhc--ccCCceeeecccccccccCCCchhhhhhcchh
Q 016016 88 IAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIK--SYSPELIVHPILEESYNISGLEDEERRCISSK 161 (396)
Q Consensus 88 vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~~i~--~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~ 161 (396)
||+|+|||+.+|||++||+.++.. |+..+|+.|.|+...+.. ...|+++.
T Consensus 1 vl~iag~D~sggaGi~aD~~t~~~~g~~~~~v~T~~t~q~~~~v~~~~~~~~~~~~------------------------ 56 (254)
T TIGR00097 1 ALTIAGSDSGGGAGIQADLKTFSALGVFGTSVITALTAQNTRGVTGVYPIPPDFVE------------------------ 56 (254)
T ss_pred CEEEeeeCCCcHHHHHHHHHHHHHcCCeecceeEEEEeEcCcceEEEEECCHHHHH------------------------
Confidence 689999999999999999865444 789999999999876532 22333322
Q ss_pred HHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCC-CEEEecCcc-----cccccch-hhh-cC-CC-Ceee
Q 016016 162 ILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV-PIVIDGDGL-----FLVTNSI-DLV-SG-YP-LAVL 231 (396)
Q Consensus 162 ~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~-PvVLDpdgl-----~ll~~~~-~ll-~~-~~-~~VI 231 (396)
+|++.++++.+.-+|++||..+.+..+.+.+.+ ++.+. |+|+||+.. .+..... +.+ +. ++ .++|
T Consensus 57 --~q~~~~~~d~~~~aikiG~l~~~~~~~~i~~~~---~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvi 131 (254)
T TIGR00097 57 --AQLDAVFSDIPVDAAKTGMLASAEIVEAVARKL---REYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLI 131 (254)
T ss_pred --HHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHH---HhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEe
Confidence 477777776555455557777877666665554 45567 799999743 2222110 112 22 24 6999
Q ss_pred cCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCCeEEEEec-cCCCCCCCCchH
Q 016016 232 TPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGEIAKSVSI-YGSPRRCGGQGD 303 (396)
Q Consensus 232 TPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~-------dvI~d~~~~~~i~~-~G~~~~t~GTGD 303 (396)
|||..|+..|+|.+. .+.++..+.+++|.+ .++..|++||.+ ++++++++.+.+.. .-....++|+||
T Consensus 132 tpN~~Ea~~L~g~~~---~~~~~~~~~a~~l~~-~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD 207 (254)
T TIGR00097 132 TPNLPEAEALLGTKI---RTEQDMIKAAKKLRE-LGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGC 207 (254)
T ss_pred cCCHHHHHHHhCCCC---CCHHHHHHHHHHHHh-cCCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHH
Confidence 999999999998642 122456777888874 677778889875 56666665554431 112225899999
Q ss_pred HHHHHHHHHHhccCChHHHHH
Q 016016 304 ILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 304 vLAGiIAa~LA~g~~l~~A~~ 324 (396)
+|++.+++++++|.++++|+.
T Consensus 208 ~f~aalaa~la~g~~l~eA~~ 228 (254)
T TIGR00097 208 TLSAAIAANLAKGLSLKEAVK 228 (254)
T ss_pred HHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999998877
No 15
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.90 E-value=1.6e-22 Score=209.31 Aligned_cols=249 Identities=18% Similarity=0.231 Sum_probs=165.4
Q ss_pred CeEEEEecCCCCCCcHHHHHHHH---hhc-CCCEEEEEecCcchhhhcccCCceeeecccccccccCCCchhhhhhcchh
Q 016016 86 GKIAVIGGCREYTGAPYFAAISA---LKI-GADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSK 161 (396)
Q Consensus 86 G~vlvIgGSd~~~GA~ilAalaA---lr~-GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~ 161 (396)
+.+|+|||||+.+||||+||+.. ++. |+.++|+.|.|++..+ +++...+ +.+.+
T Consensus 3 ~~vltiaG~D~~ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~-----~~i~~~~----------------~~~~~- 60 (448)
T PRK08573 3 PVALTIAGSDSGGGAGIEADLKTFAALGVHGAVAITSVTAQNTYEV-----RAIHDLP----------------PEVVA- 60 (448)
T ss_pred CEEEEEeeeCCCCHHHHHHHHHHHHHcCCeecccceEEEeecCCCc-----eEEEECC----------------HHHHH-
Confidence 58999999999999999999855 444 7899999999998543 2222211 11111
Q ss_pred HHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcc-----cccccch--hhhcC-CC-Ceeec
Q 016016 162 ILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL-----FLVTNSI--DLVSG-YP-LAVLT 232 (396)
Q Consensus 162 ~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl-----~ll~~~~--~ll~~-~~-~~VIT 232 (396)
+|++.++++.+...+..|+..+.+. +..+++.+++.++|+|+||+.. .+..... .+.+. ++ .++||
T Consensus 61 --~q~~a~~~d~~~~~ik~G~l~~~e~---~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~ 135 (448)
T PRK08573 61 --AQIEAVWEDMGIDAAKTGMLSNREI---IEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVT 135 (448)
T ss_pred --HHHHHHHhcCCCCEEEECCcCCHHH---HHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEc
Confidence 3556655554333444466656554 4445555567789999999632 2322110 12222 24 59999
Q ss_pred CCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCCeEEEEec-cCCCCCCCCchHH
Q 016016 233 PNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGEIAKSVSI-YGSPRRCGGQGDI 304 (396)
Q Consensus 233 PN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~-------dvI~d~~~~~~i~~-~G~~~~t~GTGDv 304 (396)
||..|+..|+|.+. .+.++..+++++|.+++|+..|++||.+ +++++++..+.+.. ......++|+||+
T Consensus 136 pN~~Ea~~L~g~~i---~~~~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDa 212 (448)
T PRK08573 136 PNRPEAEKLTGMKI---RSVEDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCS 212 (448)
T ss_pred CCHHHHHHHhCCCC---CCHHHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHH
Confidence 99999999998642 1224667788888876777778889864 25555555444431 1122368999999
Q ss_pred HHHHHHHHHhccCChHHHHHH--HhhhhhhHhh---------hhhHhhHH-HHHhHHHHHHHHHHHhhhhcc
Q 016016 305 LSGSVAVFLSWARAKGKATTR--LYYNLSFKLG---------RQLFCFLS-LISCLATYSFLMRLLQSDESN 364 (396)
Q Consensus 305 LAGiIAa~LA~g~~l~~A~~~--~y~~~~~~aa---------i~~~~~~~-~a~~~a~~~~~~~~~~~~~~~ 364 (396)
|++.+++.+++|.++++|+.. .|.......+ +-...++. .+.++.++++|.+++..++++
T Consensus 213 FsAa~aa~l~~G~~l~eAl~~A~~~~~~al~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~~~ 284 (448)
T PRK08573 213 FSAAIAAGLAKGLDPEEAIKTAKKFITMAIKYGVKIGKGHCPVNPMAWIEIPAERWRAYEELEEALEEIEEN 284 (448)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhHHhhchHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999873 2332222211 11345555 678999999999999999965
No 16
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.89 E-value=3.1e-22 Score=194.08 Aligned_cols=207 Identities=19% Similarity=0.205 Sum_probs=141.6
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcchhhh----cccCCceeeecccccccccCCCchhhhh
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI----KSYSPELIVHPILEESYNISGLEDEERR 156 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~~i----~~~~PE~~~~~~~~~~~~~~~~~~~~~~ 156 (396)
.++||+|+|||+.+|||++||+.++.. |+..+|+.|.|+....+ ...++|++.
T Consensus 3 ~~~vl~iaG~D~sggaGi~aD~~t~~~~g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~------------------- 63 (270)
T PRK12616 3 MHKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVVVAMDPENSWDHQVFPIDTDTIR------------------- 63 (270)
T ss_pred CCeEEEEEeeCCCchHHHHHHHHHHHHcCCcccceeeEEeeEeCCCcceeEEEECCHHHHH-------------------
Confidence 358999999999999999999865444 78999999999876431 222223322
Q ss_pred hcchhHHHHHHHHhc--cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCccc-----ccccc-hhhh-cC-C
Q 016016 157 CISSKILAEVDKWME--RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-----LVTNS-IDLV-SG-Y 226 (396)
Q Consensus 157 ~is~~~~~ev~~~~~--~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~-----ll~~~-~~ll-~~-~ 226 (396)
+|++.+++ ++|+++| ||..+.+.++.+.+.++.. ...|+|+||+... ++... .+.+ +. .
T Consensus 64 -------~ql~~l~~d~~~~aiki--G~l~s~~~i~~i~~~l~~~--~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~ 132 (270)
T PRK12616 64 -------AQLSTIVDGIGVDAMKT--GMLPTVDIIELAADTIKEK--QLKNVVIDPVMVCKGANEVLYPEHAEALREQLA 132 (270)
T ss_pred -------HHHHHHHcCCCCCEEEE--CCCCCHHHHHHHHHHHHhc--CCCCEEEccceecCCCCcccCHHHHHHHHHHhh
Confidence 46666666 4677777 5667888777777777543 2247999998531 11111 1122 22 2
Q ss_pred C-CeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEec-cCCCC
Q 016016 227 P-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSI-YGSPR 296 (396)
Q Consensus 227 ~-~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~--------dvI~d~~~~~~i~~-~G~~~ 296 (396)
+ .++||||..|++.|+|.+. ..+.++..++++++.+ .++..|++||.+ +++++++..+.+.. .-...
T Consensus 133 ~~advitpN~~Ea~~L~g~~~--~~~~~~~~~aa~~l~~-~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (270)
T PRK12616 133 PLATVITPNLFEAGQLSGMGE--IKTVEQMKEAAKKIHE-LGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTP 209 (270)
T ss_pred ccceEecCCHHHHHHHcCCCC--CCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCC
Confidence 3 6899999999999988520 1123456777888764 566678889863 36666665444431 11122
Q ss_pred CCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 297 RCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 297 ~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
.++|+||+|++.++++++.|.++++|+.
T Consensus 210 ~t~GaGD~fsaalaa~l~~g~~l~~Av~ 237 (270)
T PRK12616 210 YTHGAGCTFSAAVTAELAKGSEVKEAIY 237 (270)
T ss_pred CCCcHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 5799999999999999999999998877
No 17
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.88 E-value=1.7e-21 Score=184.24 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=140.0
Q ss_pred eEEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcchhhhc--ccCCceeeecccccccccCCCchhhhhhcch
Q 016016 87 KIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIK--SYSPELIVHPILEESYNISGLEDEERRCISS 160 (396)
Q Consensus 87 ~vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~~i~--~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~ 160 (396)
+|++|||||+++||+++|++.++.. ++.++|+.+.|+...... ...||.+
T Consensus 1 ~vl~i~g~d~~ggag~~adi~~~~~~g~~~~~~~T~~~~~~~~~~~~~~~~~~~~~------------------------ 56 (242)
T cd01169 1 VVLTIAGSDSSGGAGIQADLKTFAALGVYGMSVITALTAQNTLGVFGVHPVPPEFV------------------------ 56 (242)
T ss_pred CEEEEeeeCCCCHHHHHHHHHHHHHcCCEecceeEEEEeEcCcceeEEEECCHHHH------------------------
Confidence 4799999999999999999988776 679999999988653211 1111221
Q ss_pred hHHHHHHHHhc--cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccc-----cccc-h-hhhcC-CC-Ce
Q 016016 161 KILAEVDKWME--RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFL-----VTNS-I-DLVSG-YP-LA 229 (396)
Q Consensus 161 ~~~~ev~~~~~--~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~l-----l~~~-~-~ll~~-~~-~~ 229 (396)
.++++.+++ +++++++ |+..+.++.+.+.++++.. .++|+|+||+.... .... . .+.+. ++ .+
T Consensus 57 --~~~l~~~~~~~~~~~i~~--G~l~~~~~~~~i~~~~~~~--~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~d 130 (242)
T cd01169 57 --AAQLDAVLEDIPVDAIKI--GMLGSAEIIEAVAEALKDY--PDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLAT 130 (242)
T ss_pred --HHHHHHHHhCCCCCEEEE--CCCCCHHHHHHHHHHHHhC--CCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCe
Confidence 135555555 5677777 6666777777777666432 37899999974321 1111 1 12222 24 69
Q ss_pred eecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCCeEEEEeccCC-CCCCCCc
Q 016016 230 VLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGEIAKSVSIYGS-PRRCGGQ 301 (396)
Q Consensus 230 VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~-------dvI~d~~~~~~i~~~G~-~~~t~GT 301 (396)
+||||..|++.|+|.+. .+.++..+.++++.+ .++..|++||.+ +++++++..+.+..... +..++|+
T Consensus 131 vitpN~~Ea~~L~g~~~---~~~~~~~~~~~~l~~-~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga 206 (242)
T cd01169 131 LITPNLPEAELLTGLEI---ATEEDMMKAAKALLA-LGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGT 206 (242)
T ss_pred EEeCCHHHHHHHhCCCC---CCHHHHHHHHHHHHh-cCCCEEEEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCCh
Confidence 99999999999998642 122345566777765 456678889875 35666555444532222 3368999
Q ss_pred hHHHHHHHHHHHhccCChHHHHHH
Q 016016 302 GDILSGSVAVFLSWARAKGKATTR 325 (396)
Q Consensus 302 GDvLAGiIAa~LA~g~~l~~A~~~ 325 (396)
||+|+|.+++++++|.++++|+..
T Consensus 207 GD~f~a~l~a~l~~g~~~~~A~~~ 230 (242)
T cd01169 207 GCTLSSAIAANLAKGLSLEEAVRE 230 (242)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999988773
No 18
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.88 E-value=3.5e-21 Score=186.46 Aligned_cols=205 Identities=21% Similarity=0.249 Sum_probs=139.7
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcchh--h--hcccCCceeeecccccccccCCCchhhhh
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAP--V--IKSYSPELIVHPILEESYNISGLEDEERR 156 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~--~--i~~~~PE~~~~~~~~~~~~~~~~~~~~~~ 156 (396)
++.||+|+|||+.+|||++||+.++.. ++..+|+.|.|+... + +....+|.+
T Consensus 1 ~~~vl~iag~D~sggaGi~aD~~t~~~lg~~~~~v~Ta~t~q~~~~~~~~~v~~~~~~~i-------------------- 60 (268)
T PRK12412 1 LNKALTIAGSDTSGGAGIQADLKTFQELGVYGMTSLTTIVTMDPHNGWAHNVFPIPASTL-------------------- 60 (268)
T ss_pred CCeEEEEEeeCCCchHHHHHHHHHHHHcCCeeceeeeEEEeEcCCCCcEEEEEeCCHHHH--------------------
Confidence 358999999999999999999865544 678999999988643 1 112222222
Q ss_pred hcchhHHHHHHHHhcc--CCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCC-EEEecCccc-----ccccc-hh-hhcC-
Q 016016 157 CISSKILAEVDKWMER--FDCLVVGPGLGRDPYLLECVSEIMKHARQSNVP-IVIDGDGLF-----LVTNS-ID-LVSG- 225 (396)
Q Consensus 157 ~is~~~~~ev~~~~~~--~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~P-vVLDpdgl~-----ll~~~-~~-ll~~- 225 (396)
.+|++.++++ +|++++ ||..+.+..+.+.++++ +.+.+ +|+||+... ++... .+ +.+.
T Consensus 61 ------~~q~~~l~~d~~~~~iki--G~l~~~~~v~~i~~~~~---~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~l 129 (268)
T PRK12412 61 ------KPQLETTIEGVGVDALKT--GMLGSVEIIEMVAETIE---KHNFKNVVVDPVMVCKGADEALHPETNDCLRDVL 129 (268)
T ss_pred ------HHHHHHHHhCCCCCEEEE--CCCCCHHHHHHHHHHHH---hcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhh
Confidence 1466666665 788888 55667777666666654 44554 999997432 22111 11 2222
Q ss_pred CC-CeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEec-cCCC
Q 016016 226 YP-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSI-YGSP 295 (396)
Q Consensus 226 ~~-~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~--------dvI~d~~~~~~i~~-~G~~ 295 (396)
++ .++||||..|+..|+|.+. .+.++..+++++|.+ .|+..|++|+.+ +++.+++..+.+.. .-..
T Consensus 130 l~~advitpN~~Ea~~L~g~~~---~~~~~~~~aa~~l~~-~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~ 205 (268)
T PRK12412 130 VPKALVVTPNLFEAYQLSGVKI---NSLEDMKEAAKKIHA-LGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDT 205 (268)
T ss_pred hccceEEcCCHHHHHHHhCcCC---CCHHHHHHHHHHHHh-cCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCC
Confidence 33 6999999999999998642 122467778888865 577678889865 35556555444431 1122
Q ss_pred CCCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 296 RRCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 296 ~~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
..++|+||+|++.+++.+++|.++++|+.
T Consensus 206 ~~t~GaGD~f~aa~aa~l~~g~~l~eA~~ 234 (268)
T PRK12412 206 TNTHGAGCTYSAAITAELAKGKPVKEAVK 234 (268)
T ss_pred CCCCchHHHHHHHHHHHHHCCCCHHHHHH
Confidence 25799999999999999999999988877
No 19
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.88 E-value=1.9e-21 Score=203.93 Aligned_cols=218 Identities=19% Similarity=0.217 Sum_probs=143.1
Q ss_pred CCCCCCeEEEEecCCCCCCcHHHHHHHH---hhc-CCCEEEEEecCcchhhhc--ccCCceeeecccccccccCCCchhh
Q 016016 81 HKGQAGKIAVIGGCREYTGAPYFAAISA---LKI-GADLSHVFCTKDAAPVIK--SYSPELIVHPILEESYNISGLEDEE 154 (396)
Q Consensus 81 hKg~~G~vlvIgGSd~~~GA~ilAalaA---lr~-GaglVtv~t~~~~~~~i~--~~~PE~~~~~~~~~~~~~~~~~~~~ 154 (396)
.|.++|+||+|||||+++|||++||+.+ +++ ++.++|+.|.|+...+.. ...++++.
T Consensus 5 ~~~~~~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~~~~~~~~~~----------------- 67 (502)
T PLN02898 5 SPMKVPHVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGVHAVPLDFVA----------------- 67 (502)
T ss_pred CCCCCCeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCccceeeeCCHHHHH-----------------
Confidence 3445899999999999999999998754 333 568888888887754321 22222221
Q ss_pred hhhcchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCC-CEEEecCcc-----cccccc-hhhhc-C-
Q 016016 155 RRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV-PIVIDGDGL-----FLVTNS-IDLVS-G- 225 (396)
Q Consensus 155 ~~~is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~-PvVLDpdgl-----~ll~~~-~~ll~-~- 225 (396)
+|++.++.+.+..+|.+|+..+.++++.+.+.++ +.+. |+|+||+.. .+.... .+.++ .
T Consensus 68 ---------~ql~~~~~d~~~~aik~G~l~~~~~i~~i~~~l~---~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~L 135 (502)
T PLN02898 68 ---------EQLKSVLSDMPVDVVKTGMLPSAEIVKVLCQALK---EFPVKALVVDPVMVSTSGDVLAGPSILSALREEL 135 (502)
T ss_pred ---------HHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHHH---hCCCCCEEEccccccCCCCccCCHHHHHHHHHhh
Confidence 4566666654444444466667777666666554 3455 599999732 122211 11222 2
Q ss_pred CC-CeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEeccCCC-
Q 016016 226 YP-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSIYGSP- 295 (396)
Q Consensus 226 ~~-~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~--------dvI~d~~~~~~i~~~G~~- 295 (396)
++ +++||||..|++.|+|.... .+.++..+.++++.+ .|+..|++||.+ +++++++..+.+...-.+
T Consensus 136 l~~adiitPN~~Ea~~L~g~~~~--~~~~~~~~~a~~l~~-~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 212 (502)
T PLN02898 136 LPLATIVTPNVKEASALLGGDPL--ETVADMRSAAKELHK-LGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKT 212 (502)
T ss_pred hccCeEEcCCHHHHHHHhCCCCC--CCHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCC
Confidence 33 69999999999999974311 122456777888864 566678889875 466666654444311112
Q ss_pred CCCCCchHHHHHHHHHHHhccCChHHHHHH--Hhhhh
Q 016016 296 RRCGGQGDILSGSVAVFLSWARAKGKATTR--LYYNL 330 (396)
Q Consensus 296 ~~t~GTGDvLAGiIAa~LA~g~~l~~A~~~--~y~~~ 330 (396)
.+++||||+|++.+++++++|.++++|+.. .|.+.
T Consensus 213 ~~t~GaGD~fsaaiaa~l~~G~~l~eAv~~A~~~v~~ 249 (502)
T PLN02898 213 RNTHGTGCTLASCIAAELAKGSDMLSAVKVAKRYVET 249 (502)
T ss_pred CCCCchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999873 44443
No 20
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.88 E-value=1.7e-21 Score=213.05 Aligned_cols=222 Identities=16% Similarity=0.199 Sum_probs=150.8
Q ss_pred CCCCCCCeEEEEecCCCCCCcHHHHHHHH---hhc-CCCEEEEEecCcchhhh--cccCCceeeecccccccccCCCchh
Q 016016 80 KHKGQAGKIAVIGGCREYTGAPYFAAISA---LKI-GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLEDE 153 (396)
Q Consensus 80 ~hKg~~G~vlvIgGSd~~~GA~ilAalaA---lr~-GaglVtv~t~~~~~~~i--~~~~PE~~~~~~~~~~~~~~~~~~~ 153 (396)
+..-..+.||+|+|||+.+|||++||+.+ +++ |+.++|+.|.|+...+. ....||++.
T Consensus 236 ~~~~~~~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~~viTaltaQn~~~v~~v~~~~~~~v~---------------- 299 (755)
T PRK09517 236 VNSPSAPRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTALVAQNTHGVNTIHTPPLTFLE---------------- 299 (755)
T ss_pred cccCCCCeEEEEeccCCCcHHHHHHHHHHHHHcCCcccchheeEeeEcccceeEEeeCCHHHHH----------------
Confidence 33445689999999999999999999855 444 78999999999987652 233333332
Q ss_pred hhhhcchhHHHHHHHHhcc--CCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcc-----cccccc-hhhhcC
Q 016016 154 ERRCISSKILAEVDKWMER--FDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL-----FLVTNS-IDLVSG 225 (396)
Q Consensus 154 ~~~~is~~~~~ev~~~~~~--~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl-----~ll~~~-~~ll~~ 225 (396)
+|++.++++ +++++| ||..+.++.+.+.+.++.. .+.|+|+||+.. .+.... .+.+++
T Consensus 300 ----------~Ql~~~~~d~~~~aiKi--GmL~s~e~v~~i~~~l~~~--~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~ 365 (755)
T PRK09517 300 ----------EQLEAVFSDVTVDAVKL--GMLGSADTVDLVASWLGSH--EHGPVVLDPVMVATSGDRLLDADATEALRR 365 (755)
T ss_pred ----------HHHHHHHcCCCCCEEEE--CCCCCHHHHHHHHHHHHhC--CCCCEEEecccccCCCCCCCCHHHHHHHHH
Confidence 467777664 577777 5566777777776666432 356899999743 222211 122222
Q ss_pred -CC-CeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEc-CCeEEEEe-ccCC
Q 016016 226 -YP-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISD-GEIAKSVS-IYGS 294 (396)
Q Consensus 226 -~~-~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~-------dvI~d-~~~~~~i~-~~G~ 294 (396)
++ ++|||||..|+..|+|... ..+.+++.+.++++.+..++ .|++||++ ++++. ++..+.+. +.-.
T Consensus 366 Llp~adlItPN~~Ea~~L~g~~~--~~~~~d~~~aa~~L~~~~g~-~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~ 442 (755)
T PRK09517 366 LAVHVDVVTPNIPELAVLCGEAP--AITMDEAIAQARGFARTHGT-IVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVN 442 (755)
T ss_pred HhCcccCccCCHHHHHHHhCCCC--CCCHHHHHHHHHHHHHhcCC-EEEEcCCcCCCCccceEEEeCCCeEEEEeecccC
Confidence 34 6999999999999998431 01224677788889876665 67789974 45543 33344443 1112
Q ss_pred CCCCCCchHHHHHHHHHHHhccCChHHHHH--HHhhhhhhHh
Q 016016 295 PRRCGGQGDILSGSVAVFLSWARAKGKATT--RLYYNLSFKL 334 (396)
Q Consensus 295 ~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~--~~y~~~~~~a 334 (396)
..+++||||+|+|.+++++++|.++++|+. ..|++.....
T Consensus 443 ~~~t~GaGDtfsaaiaa~La~G~sl~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 443 TTNSHGTGCSLSAALATLIAAGESVEKALEWATRWLNEALRH 484 (755)
T ss_pred CCCCcChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 226899999999999999999999999988 3566654443
No 21
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.87 E-value=7.5e-21 Score=183.02 Aligned_cols=205 Identities=23% Similarity=0.322 Sum_probs=138.5
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcchhhh--cccCCceeeecccccccccCCCchhhhhhc
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLEDEERRCI 158 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~~i--~~~~PE~~~~~~~~~~~~~~~~~~~~~~~i 158 (396)
.+.||+|+|+|+++||+++|++.++.. +++++|+.+.|+...+. ....||.+.
T Consensus 4 ~~~vl~i~g~d~~ggaG~~adi~~~~~~g~~~~~v~Ta~~~q~~~~~~~~~~~~~~~~~--------------------- 62 (266)
T PRK06427 4 RPIALTIAGSDSGGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVQRVHPIPPEFVA--------------------- 62 (266)
T ss_pred CCEEEEEeecCCCCcHHHHHHHHHHHHcCCEEeeeeeEEEeecCCCeeEEEeCCHHHHH---------------------
Confidence 568999999999999999999977763 68999999998764421 111222221
Q ss_pred chhHHHHHHHHhc--cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC-CCEEEecCccc-----ccccc-hhhh-cC-CC
Q 016016 159 SSKILAEVDKWME--RFDCLVVGPGLGRDPYLLECVSEIMKHARQSN-VPIVIDGDGLF-----LVTNS-IDLV-SG-YP 227 (396)
Q Consensus 159 s~~~~~ev~~~~~--~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~-~PvVLDpdgl~-----ll~~~-~~ll-~~-~~ 227 (396)
++++.+++ +++++++|+ ..+.++.+.+.++++ +.+ .|+|+||+... +.... .+.+ ++ ++
T Consensus 63 -----~q~~~~~~~~~~~ai~iG~--l~~~~~~~~i~~~~~---~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~ 132 (266)
T PRK06427 63 -----AQLDAVFSDIRIDAVKIGM--LASAEIIETVAEALK---RYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLP 132 (266)
T ss_pred -----HHHHHHHhcCCCCEEEECC--cCCHHHHHHHHHHHH---hCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhC
Confidence 34444444 678888865 447776666666554 344 48999997332 11111 0112 22 33
Q ss_pred -CeeecCCHHHHHHHhcccccCCCCCCc-HHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEeccCCCC-
Q 016016 228 -LAVLTPNVNEYKRLVQKVLNCEVNDRD-APELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSIYGSPR- 296 (396)
Q Consensus 228 -~~VITPN~~E~a~L~g~~~~~~~~~~d-~~~~a~~La~~~g~vvVllKG~~--------dvI~d~~~~~~i~~~G~~~- 296 (396)
.+|||||..|++.|+|.+. .+.++ ..+.++++.+ .++..|++||.+ ++++++++.+.+.....+.
T Consensus 133 ~~dvitpN~~Ea~~L~g~~~---~~~~~~~~~~a~~l~~-~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 208 (266)
T PRK06427 133 LATLITPNLPEAEALTGLPI---ADTEDEMKAAARALHA-LGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTK 208 (266)
T ss_pred cCeEEcCCHHHHHHHhCCCC---CCcHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCC
Confidence 6999999999999998642 12223 5677888875 566678889886 4666665544443111122
Q ss_pred CCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 297 RCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 297 ~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
.++|+||+|+|.+++++++|.++++|+.
T Consensus 209 ~~~GaGD~f~a~l~~~l~~g~~l~~A~~ 236 (266)
T PRK06427 209 NTHGTGCTLSAAIAAELAKGASLLDAVQ 236 (266)
T ss_pred CCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 6899999999999999999999888877
No 22
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.86 E-value=2.2e-21 Score=185.83 Aligned_cols=201 Identities=22% Similarity=0.357 Sum_probs=132.1
Q ss_pred CCCCCcHHHHHHHHhhc----CCCEEEEEecCcchhhhc--ccCCceeeecccccccccCCCchhhhhhcchhHHHHHHH
Q 016016 95 REYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIK--SYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDK 168 (396)
Q Consensus 95 d~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~~i~--~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~~~ev~~ 168 (396)
|+.+|||++||+..+.. ++.++|+.|.|+...+.. ...+|.+ .++++.
T Consensus 1 DpsggaGi~aDi~t~~a~G~~~~~v~Talt~qn~~~~~~~~~~~~~~~--------------------------~~ql~~ 54 (246)
T PF08543_consen 1 DPSGGAGIQADIKTISALGVHGCPVPTALTSQNTYGVFDIEPVDSEMI--------------------------KAQLDA 54 (246)
T ss_dssp ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTEEEEEEE--HHHH--------------------------HHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCccceEeEEEEecCCcceEEEEECCHHHH--------------------------HHHHHH
Confidence 57899999999866555 578999999888554321 1111211 135555
Q ss_pred Hhc--cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCccc-----ccccc-hhhhcC--CC-CeeecCCHHH
Q 016016 169 WME--RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-----LVTNS-IDLVSG--YP-LAVLTPNVNE 237 (396)
Q Consensus 169 ~~~--~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~-----ll~~~-~~ll~~--~~-~~VITPN~~E 237 (396)
+.+ ++|++++ |+..+.++++.+.++++. .+.++|+||+... ..... .+.+++ ++ .+|||||..|
T Consensus 55 ~~~~~~~~aiki--G~l~~~~~v~~i~~~l~~---~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~E 129 (246)
T PF08543_consen 55 LLEDMKFDAIKI--GYLGSAEQVEIIADFLKK---PKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTE 129 (246)
T ss_dssp HHHTSC-SEEEE---S-SSHHHHHHHHHHHHH---TTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHH
T ss_pred hcccccccEEEE--cccCCchhhhhHHHHHhc---cCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHH
Confidence 554 6788888 556688888888888743 5669999997431 11111 122221 24 6999999999
Q ss_pred HHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc---------eEEEcCCeEEEEeccCCC-CCCCCchHHHHH
Q 016016 238 YKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS---------DLISDGEIAKSVSIYGSP-RRCGGQGDILSG 307 (396)
Q Consensus 238 ~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~---------dvI~d~~~~~~i~~~G~~-~~t~GTGDvLAG 307 (396)
++.|+|.+. .+.++..+++++|.+ +|+..|++||.+ +++++++..+.+.....+ ...+||||+||+
T Consensus 130 a~~L~g~~i---~~~~~~~~~~~~l~~-~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss 205 (246)
T PF08543_consen 130 AELLTGREI---NSEEDIEEAAKALLA-LGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSS 205 (246)
T ss_dssp HHHHHTS-----SSHHHHHHHHHHHHH-TS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHH
T ss_pred HHHHhCCCC---CChHhHHHHHHHHHH-hCCceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHH
Confidence 999999653 134578888999987 777788999975 455666665555422223 579999999999
Q ss_pred HHHHHHhccCChHHHHHH--Hhhhh
Q 016016 308 SVAVFLSWARAKGKATTR--LYYNL 330 (396)
Q Consensus 308 iIAa~LA~g~~l~~A~~~--~y~~~ 330 (396)
+++++|++|.++++|+.. .|++.
T Consensus 206 ~laa~l~~g~~l~~Av~~A~~~v~~ 230 (246)
T PF08543_consen 206 ALAAFLAKGYSLEEAVEKAKNFVRR 230 (246)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999873 44443
No 23
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.86 E-value=2e-20 Score=179.11 Aligned_cols=158 Identities=26% Similarity=0.326 Sum_probs=118.3
Q ss_pred HHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccch----hhhcCCCCeeecCCHHHHH
Q 016016 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI----DLVSGYPLAVLTPNVNEYK 239 (396)
Q Consensus 164 ~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~----~ll~~~~~~VITPN~~E~a 239 (396)
+++.++++++|+++||+|++.+ +..+.+...++.+++.++|+|+||++........ +++...+.+|||||..|++
T Consensus 41 e~~~~~l~~~d~vvi~~G~l~~-~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~ 119 (242)
T cd01170 41 EEVEELAKIAGALVINIGTLTS-EQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIA 119 (242)
T ss_pred HHHHHHHHHcCcEEEeCCCCCh-HHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHH
Confidence 4667777899999999999964 3345566666666778999999999876554332 2332114799999999999
Q ss_pred HHhcccccC---CC-C--CCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccCCCC--CCCCchHHHHHHHHH
Q 016016 240 RLVQKVLNC---EV-N--DRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAV 311 (396)
Q Consensus 240 ~L~g~~~~~---~~-~--~~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G~~~--~t~GTGDvLAGiIAa 311 (396)
+|+|.+... +. + .+++.+.++++++++++ .|++||.+|+++++++.+.+. .+.+. .++|+||+|+|+||+
T Consensus 120 ~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~-~VllkG~~d~l~~~~~~~~~~-~~~~~~~~v~GtGdtLa~aiAa 197 (242)
T cd01170 120 ALAGLTGLGKGVDSSSSDEEDALELAKALARKYGA-VVVVTGEVDYITDGERVVVVK-NGHPLLTKITGTGCLLGAVIAA 197 (242)
T ss_pred HHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCC-EEEEECCCcEEEECCEEEEEe-CCCccccCCCchHHHHHHHHHH
Confidence 999865211 01 1 34678899999988887 578999999999887766553 34443 369999999999999
Q ss_pred HHhccCChHHHHH
Q 016016 312 FLSWARAKGKATT 324 (396)
Q Consensus 312 ~LA~g~~l~~A~~ 324 (396)
++++|.++.+|+.
T Consensus 198 ~LA~g~~~~~A~~ 210 (242)
T cd01170 198 FLAVGDDPLEAAV 210 (242)
T ss_pred HHhCCCCHHHHHH
Confidence 9999998776655
No 24
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.86 E-value=9.4e-21 Score=199.97 Aligned_cols=219 Identities=18% Similarity=0.207 Sum_probs=149.1
Q ss_pred CCCCCeEEEEecCCCCCCcHHHHHHHH---hhc-CCCEEEEEecCcchhhh--cccCCceeeecccccccccCCCchhhh
Q 016016 82 KGQAGKIAVIGGCREYTGAPYFAAISA---LKI-GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLEDEER 155 (396)
Q Consensus 82 Kg~~G~vlvIgGSd~~~GA~ilAalaA---lr~-GaglVtv~t~~~~~~~i--~~~~PE~~~~~~~~~~~~~~~~~~~~~ 155 (396)
-...++||+|+|+|+++|||++||+.. +++ |+.++|+.|.|+...+. ....++.+.
T Consensus 26 ~~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t~~v~~v~~~~~~~i~------------------ 87 (530)
T PRK14713 26 AAATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNTRGVRAVHVPPADFLR------------------ 87 (530)
T ss_pred CCCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecCcceeeeccCCHHHHH------------------
Confidence 344579999999999999999999855 444 78999999999876532 122222221
Q ss_pred hhcchhHHHHHHHHhc--cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcc-----cccccc-hhhhcC-C
Q 016016 156 RCISSKILAEVDKWME--RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL-----FLVTNS-IDLVSG-Y 226 (396)
Q Consensus 156 ~~is~~~~~ev~~~~~--~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl-----~ll~~~-~~ll~~-~ 226 (396)
+|++.+++ .+++++| |+..+.++++.+.++++.. ...++|+||+.. .+.... .+.+++ +
T Consensus 88 --------~ql~~l~~d~~~~aiki--G~l~s~~~i~~v~~~l~~~--~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll 155 (530)
T PRK14713 88 --------AQLDAVSDDVTVDAVKI--GMLGDAEVIDAVRTWLAEH--RPPVVVLDPVMVATSGDRLLEEDAEAALRELV 155 (530)
T ss_pred --------HHHHHHHhCCCCCEEEE--CCcCCHHHHHHHHHHHHhC--CCCCEEECCcccCCCCCCCCCHHHHHHHHHHh
Confidence 46666666 4577777 6667888888888888654 234699999753 222211 112222 3
Q ss_pred C-CeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCCe-EEEEec-cCCCC
Q 016016 227 P-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGEI-AKSVSI-YGSPR 296 (396)
Q Consensus 227 ~-~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~-------dvI~d~~~-~~~i~~-~G~~~ 296 (396)
+ ++|||||..|+..|+|.+.. .+.++..+.++++++..+. .|++||++ ++++++++ .+.+.. .....
T Consensus 156 ~~advItPN~~Ea~~Ltg~~~~--~~~~d~~~aa~~L~~~~g~-~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~ 232 (530)
T PRK14713 156 PRADLITPNLPELAVLLGEPPA--TTWEEALAQARRLAAETGT-TVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTR 232 (530)
T ss_pred hhhheecCChHHHHHHhCCCCC--CCHHHHHHHHHHHHHhcCC-EEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCC
Confidence 4 69999999999999986421 1234667788888876555 67789874 45654433 444431 11223
Q ss_pred CCCCchHHHHHHHHHHHhccCChHHHHHH--HhhhhhhH
Q 016016 297 RCGGQGDILSGSVAVFLSWARAKGKATTR--LYYNLSFK 333 (396)
Q Consensus 297 ~t~GTGDvLAGiIAa~LA~g~~l~~A~~~--~y~~~~~~ 333 (396)
.++||||+|+|.+++++++|.++++|+.. .|++....
T Consensus 233 ~t~GaGD~fsaalaa~La~G~~l~eAv~~A~~~v~~~i~ 271 (530)
T PRK14713 233 NTHGTGCSLSSALATRLGRGGDWAAALRWATAWLHGAIA 271 (530)
T ss_pred CCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999883 45554433
No 25
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.86 E-value=1.5e-20 Score=197.33 Aligned_cols=210 Identities=22% Similarity=0.286 Sum_probs=144.1
Q ss_pred CCCCCCeEEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcchhhhc--ccCCceeeecccccccccCCCchhh
Q 016016 81 HKGQAGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIK--SYSPELIVHPILEESYNISGLEDEE 154 (396)
Q Consensus 81 hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~~i~--~~~PE~~~~~~~~~~~~~~~~~~~~ 154 (396)
.-...++||+|+|||+++|||++||+..+.. |+..||+.|.|+...+.. ...++.
T Consensus 226 ~~~~~~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~vta~t~qn~~~~~~~~~~~~~~------------------- 286 (504)
T PTZ00347 226 NPMKIPTVLTVSGSDSGGGAGHQADLKTLEALGVYSTSALTSLTAQNTKGVQQIQVVNEDF------------------- 286 (504)
T ss_pred CCCCCCeEEEEeCcCCCChHHHHHHHHHHHHcCCcccchheeEEeEcCcceeeEEeCCHHH-------------------
Confidence 3334679999999999999999999865544 568999999998765431 111111
Q ss_pred hhhcchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcc-----cccccc--h---hhhc
Q 016016 155 RRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL-----FLVTNS--I---DLVS 224 (396)
Q Consensus 155 ~~~is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl-----~ll~~~--~---~ll~ 224 (396)
..++++.++++.+..+|++|+..+.++++.+.+.++ ++|+|+||+.. .+.... . +.++
T Consensus 287 -------~~~ql~~l~~d~~~~~Ik~G~l~s~e~i~~i~~~l~-----~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~ 354 (504)
T PTZ00347 287 -------FAAQIDSVMSDFNISVVKLGLVPTARQLEIVIEKLK-----NLPMVVDPVLVATSGDDLVAQKNADDVLAMYK 354 (504)
T ss_pred -------HHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHhc-----CCCEEEcccceeCCCCcccchhHHHHHHHHHH
Confidence 125677777777666666687778777766665552 57999999753 222210 1 1122
Q ss_pred -C-CC-CeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc---------eEEEcC--CeEEEEe
Q 016016 225 -G-YP-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS---------DLISDG--EIAKSVS 290 (396)
Q Consensus 225 -~-~~-~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~---------dvI~d~--~~~~~i~ 290 (396)
. ++ .+|||||..|+..|+|.+. ..+.++..++++.+.+ +|+..|++||++ ++++++ +..+.+.
T Consensus 355 ~~Ll~~advitPN~~Ea~~L~g~~~--~~~~~~~~~aa~~l~~-~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (504)
T PTZ00347 355 ERIFPMATIITPNIPEAERILGRKE--ITGVYEARAAAQALAQ-YGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFT 431 (504)
T ss_pred HhccCcceEEeCCHHHHHHHhCCCC--CCCHHHHHHHHHHHHh-cCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEE
Confidence 2 34 5999999999999998531 0122356677788875 677678889876 466653 3344443
Q ss_pred c-cCCCCCCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 291 I-YGSPRRCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 291 ~-~G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
. .-....++|+||+|+|.+++++++|.++++|+.
T Consensus 432 ~~~i~~~~~~GaGD~fsaaiaa~la~G~~l~eAv~ 466 (504)
T PTZ00347 432 ANRIATINTHGTGCTLASAISSFLARGYTVPDAVE 466 (504)
T ss_pred eeeECCCCCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 1 111236899999999999999999999998877
No 26
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.83 E-value=3e-19 Score=170.74 Aligned_cols=216 Identities=19% Similarity=0.223 Sum_probs=142.0
Q ss_pred CCCeEEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcchhhhcccCCceeeecccccccccCCCchhhhhhcc
Q 016016 84 QAGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCIS 159 (396)
Q Consensus 84 ~~G~vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is 159 (396)
.++.||+|+|||+.+|||++||+.++.. |+..+|+.|.++... |++. +...
T Consensus 2 ~~~~vl~iag~d~~ggaG~~aD~~~~~~~~~~~~~~~t~~t~~~~~G------~~v~--~~~~----------------- 56 (253)
T PRK12413 2 KTNYILAISGNDIFSGGGLHADLATYTRNGLHGFVAVTCLTAMTEKG------FEVF--PVDK----------------- 56 (253)
T ss_pred CCCeEEEEeeeCCCCHHHHHHHHHHHHHcCCccCeeeEEEecccCCc------eEEE--ECCH-----------------
Confidence 4678999999999999999999966555 778888888877643 2221 1110
Q ss_pred hhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccc---cc---hhhhcC-CC-Ceee
Q 016016 160 SKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVT---NS---IDLVSG-YP-LAVL 231 (396)
Q Consensus 160 ~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~---~~---~~ll~~-~~-~~VI 231 (396)
+...++++.+ .+.+..++.+|+..+.+..+.+.++++. +.++|+|+||+...-.. .. .+.+++ ++ .++|
T Consensus 57 ~~l~~~l~~l-~~~~~~~i~~G~l~~~~~~~~~~~~~~~--~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli 133 (253)
T PRK12413 57 EIFQQQLDSL-KDVPFSAIKIGLLPNVEIAEQALDFIKG--HPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVI 133 (253)
T ss_pred HHHHHHHHHh-hCCCCCEEEECCcCCHHHHHHHHHHHHh--CCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEE
Confidence 0112455554 4555555555676666655566555543 46889999997443211 01 122222 33 4899
Q ss_pred cCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEeccCCCCCCCCchH
Q 016016 232 TPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSIYGSPRRCGGQGD 303 (396)
Q Consensus 232 TPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~--------dvI~d~~~~~~i~~~G~~~~t~GTGD 303 (396)
|||..|+..|+|.+. .+.++..+.++++.+ .++..|++|+.+ +++.+++..+..........++|+||
T Consensus 134 ~pN~~E~~~L~g~~~---~~~~~~~~~a~~l~~-~g~~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD 209 (253)
T PRK12413 134 TPNLVEAELLSGKEI---KTLEDMKEAAKKLYD-LGAKAVVIKGGNRLSQKKAIDLFYDGKEFVILESPVLEKNNIGAGC 209 (253)
T ss_pred CCCHHHHHHHhCcCC---CCHHHHHHHHHHHHH-cCCCEEEEeCCCCCCCCcceEEEEcCCEEEEEeecccCCCCCChHH
Confidence 999999999998652 122456677788875 466677888764 35666666543322222236899999
Q ss_pred HHHHHHHHHHhccCChHHHHHH--Hhhhhh
Q 016016 304 ILSGSVAVFLSWARAKGKATTR--LYYNLS 331 (396)
Q Consensus 304 vLAGiIAa~LA~g~~l~~A~~~--~y~~~~ 331 (396)
.|+|.+++.+++|.++++|+.. .|.+..
T Consensus 210 af~a~~~~~l~~g~~l~ea~~~A~~~~~~~ 239 (253)
T PRK12413 210 TFASSIASQLVKGKSPLEAVKNSKDFVYQA 239 (253)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988773 444433
No 27
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.79 E-value=3.2e-18 Score=163.54 Aligned_cols=213 Identities=19% Similarity=0.121 Sum_probs=139.8
Q ss_pred eEEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcchhhhcccCCceeeecccccccccCCCchhhhhhcchhH
Q 016016 87 KIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKI 162 (396)
Q Consensus 87 ~vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~ 162 (396)
+||+|+|+++++||++.|++..+.. ++.++|+.+.|+...+... .|++. + ..-++.
T Consensus 1 ~vl~i~~~~~~g~ag~~ad~~~~~~~g~~~~~~~T~~~~~~~~~~~~~-~~~~~---------------~----~~~~~~ 60 (254)
T cd01173 1 RVLSIQSHVVHGYVGNSAAVFPLQRLGWDVDALPTVQFSNHTGYGTWT-GFVLS---------------A----EELEDL 60 (254)
T ss_pred CEEEEecceecceECCeeHHHHHHHcCCccceeCceecCCCCCCCCCC-CeecC---------------H----HHHHHH
Confidence 5899999999999999999866555 5788888888876532110 11110 0 000111
Q ss_pred HHHHHHHh--ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcC--CCCEEEecCcc---ccc--ccc-hhhhcC--C-CCe
Q 016016 163 LAEVDKWM--ERFDCLVVGPGLGRDPYLLECVSEIMKHARQS--NVPIVIDGDGL---FLV--TNS-IDLVSG--Y-PLA 229 (396)
Q Consensus 163 ~~ev~~~~--~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~--~~PvVLDpdgl---~ll--~~~-~~ll~~--~-~~~ 229 (396)
++.+.++. ..++++++ |+..+.+..+.+.++++.+++. ++++|+||+-. .+. ... .+.+++ . .++
T Consensus 61 ~~~~~~~~~~~~~~~v~~--G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~d 138 (254)
T cd01173 61 LEGLEALGLLLEYDAVLT--GYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLAD 138 (254)
T ss_pred HHHHHHcCCcccCCEEEE--ecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCC
Confidence 22333332 46788877 4555777788899999888765 78999999621 111 111 122221 2 479
Q ss_pred eecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEe-ccCC-CCCCC
Q 016016 230 VLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVS-IYGS-PRRCG 299 (396)
Q Consensus 230 VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~--------dvI~d~~~~~~i~-~~G~-~~~t~ 299 (396)
|||||..|+..|+|.+. .+.++..+.++++.+ .++..|++|+.+ .++.++++.+.+. +.-. +..++
T Consensus 139 vi~pN~~Ea~~l~g~~~---~~~~~~~~~~~~l~~-~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 214 (254)
T cd01173 139 IITPNQFELELLTGKKI---NDLEDAKAAARALHA-KGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFN 214 (254)
T ss_pred EECCcHHHHHHHcCCCc---CCHHHHHHHHHHHHH-hCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcC
Confidence 99999999999998652 122456777888875 456678889654 3444544433332 2222 35799
Q ss_pred CchHHHHHHHHHHHhccCChHHHHHH
Q 016016 300 GQGDILSGSVAVFLSWARAKGKATTR 325 (396)
Q Consensus 300 GTGDvLAGiIAa~LA~g~~l~~A~~~ 325 (396)
|+||.|++.+++.+++|.++++|+..
T Consensus 215 GaGD~f~a~~~~~l~~g~~~~~a~~~ 240 (254)
T cd01173 215 GTGDLFAALLLARLLKGKSLAEALEK 240 (254)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999988873
No 28
>PRK07105 pyridoxamine kinase; Validated
Probab=99.73 E-value=5.1e-16 Score=151.34 Aligned_cols=217 Identities=18% Similarity=0.218 Sum_probs=137.9
Q ss_pred CeEEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcchhhhcccCCceeeecccccccccCCCchhhhhhcchh
Q 016016 86 GKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSK 161 (396)
Q Consensus 86 G~vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~ 161 (396)
.+||.+-....++||+++|++..+.. ++.++|+.+.|+...+-. +..+. +.+ .+ +.
T Consensus 5 ~~vl~~~d~~~~G~aG~~adi~~~~~~g~~~~~v~T~~~~q~t~~~~~---~~~~~--~~~--------------~~-~~ 64 (284)
T PRK07105 5 KRVAAIHDLSGFGRVALTASIPIMSSMGLQVCPLPTALLSSHTGGFQN---PSIID--LTD--------------GM-QA 64 (284)
T ss_pred CeEEEEecccccceehHhhHHHHHHHcCCcceeccceEeccCCCCCCC---CeEee--cHH--------------HH-HH
Confidence 37888877777799999999866555 578999999988754321 11111 100 00 01
Q ss_pred HHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCccc---ccc---cc-hhhhcC-CC-Ceeec
Q 016016 162 ILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF---LVT---NS-IDLVSG-YP-LAVLT 232 (396)
Q Consensus 162 ~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~---ll~---~~-~~ll~~-~~-~~VIT 232 (396)
.++++.+.-..+|++++ |+..+.+..+.+.++++.+++.++|+|+||+-.. +.. .. .+.+++ ++ .++||
T Consensus 65 ~~~~~~~~~~~~~aik~--G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advit 142 (284)
T PRK07105 65 FLTHWKSLNLKFDAIYS--GYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVIT 142 (284)
T ss_pred HHHHHHHcCCccCEEEE--CcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEec
Confidence 11222222226888888 5566778888888888777667889999997321 111 10 112222 33 69999
Q ss_pred CCHHHHHHHhcccccC-CCCCCcHHHHHHHHHHhhCCeEEEEcC-----C--ceEEEcC--CeEEEEeccCCCCCCCCch
Q 016016 233 PNVNEYKRLVQKVLNC-EVNDRDAPELLQSLAKQIGGVTILQKG-----K--SDLISDG--EIAKSVSIYGSPRRCGGQG 302 (396)
Q Consensus 233 PN~~E~a~L~g~~~~~-~~~~~d~~~~a~~La~~~g~vvVllKG-----~--~dvI~d~--~~~~~i~~~G~~~~t~GTG 302 (396)
||..|+..|+|.+... +.+.++..+.++++.+ .++..|++|| . ..+++++ +.++.+...-.+..++|+|
T Consensus 143 pN~~Ea~~L~g~~~~~~~~~~~~~~~~a~~l~~-~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~GaG 221 (284)
T PRK07105 143 PNLTEACLLLDKPYLEKSYSEEEIKQLLRKLAD-LGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYIPAHYPGTG 221 (284)
T ss_pred CCHHHHHHHcCCCcCcCCCCHHHHHHHHHHHHh-cCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecccCCCcCChh
Confidence 9999999999864210 0122356667777764 5666788898 2 2344432 2333332112223589999
Q ss_pred HHHHHHHHHHHhccCChHHHHHH
Q 016016 303 DILSGSVAVFLSWARAKGKATTR 325 (396)
Q Consensus 303 DvLAGiIAa~LA~g~~l~~A~~~ 325 (396)
|+|++.+++.+++|.++++|+..
T Consensus 222 D~f~aa~~~~l~~g~~l~~av~~ 244 (284)
T PRK07105 222 DIFTSVITGSLLQGDSLPIALDR 244 (284)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999873
No 29
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.70 E-value=5.5e-16 Score=152.33 Aligned_cols=209 Identities=20% Similarity=0.211 Sum_probs=158.8
Q ss_pred eEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchhhhccc----CCceeeecccccccccCCCchhhhhhcchhH
Q 016016 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSY----SPELIVHPILEESYNISGLEDEERRCISSKI 162 (396)
Q Consensus 87 ~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~~i~~~----~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~ 162 (396)
-++++|| ++|..+.+-+.-.++...++.+.++.+++..+... .+|+...+ |.|++++
T Consensus 55 a~GflGg---~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~G----------------p~is~~~ 115 (310)
T COG1105 55 ALGFLGG---FTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPG----------------PEISEAE 115 (310)
T ss_pred EEEecCC---ccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCC----------------CCCCHHH
Confidence 4567777 99999999999999999999999999998876533 45555443 5677777
Q ss_pred HHHH----HHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHH
Q 016016 163 LAEV----DKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEY 238 (396)
Q Consensus 163 ~~ev----~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~ 238 (396)
++++ ..+++..|++|++-.+++.-. .+.+.++++.+++.++++|+|.+|..+.. .++ .+|.+|+||..|+
T Consensus 116 ~~~~l~~~~~~l~~~d~VvlsGSlP~g~~-~d~y~~li~~~~~~g~~vilD~Sg~~L~~----~L~-~~P~lIKPN~~EL 189 (310)
T COG1105 116 LEQFLEQLKALLESDDIVVLSGSLPPGVP-PDAYAELIRILRQQGAKVILDTSGEALLA----ALE-AKPWLIKPNREEL 189 (310)
T ss_pred HHHHHHHHHHhcccCCEEEEeCCCCCCCC-HHHHHHHHHHHHhcCCeEEEECChHHHHH----HHc-cCCcEEecCHHHH
Confidence 6654 444567899999853433211 34778888888999999999999987754 454 5699999999999
Q ss_pred HHHhcccccCCCCCCcHHHHHHHHHHh-hCCeEEEEcCCceEEEcCCeEEEEe-ccCCCCCCCCchH-HHHHHHHHHHhc
Q 016016 239 KRLVQKVLNCEVNDRDAPELLQSLAKQ-IGGVTILQKGKSDLISDGEIAKSVS-IYGSPRRCGGQGD-ILSGSVAVFLSW 315 (396)
Q Consensus 239 a~L~g~~~~~~~~~~d~~~~a~~La~~-~g~vvVllKG~~dvI~d~~~~~~i~-~~G~~~~t~GTGD-vLAGiIAa~LA~ 315 (396)
..|+|.+. .+.+|.+++++++..+ ...++|.+.+.+.+..+++..|++. +.+...++.|.|| ++||++++++..
T Consensus 190 ~~~~g~~~---~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~~ 266 (310)
T COG1105 190 EALFGREL---TTLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLKG 266 (310)
T ss_pred HHHhCCCC---CChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHcC
Confidence 99999863 2335788889886554 5567788888899999999988876 3333337999999 899999988754
Q ss_pred cCChHHHHH
Q 016016 316 ARAKGKATT 324 (396)
Q Consensus 316 g~~l~~A~~ 324 (396)
.+++++..
T Consensus 267 -~~~e~~l~ 274 (310)
T COG1105 267 -KSLEEALR 274 (310)
T ss_pred -CCHHHHHH
Confidence 66776655
No 30
>PRK05756 pyridoxamine kinase; Validated
Probab=99.65 E-value=1.3e-14 Score=141.66 Aligned_cols=207 Identities=16% Similarity=0.093 Sum_probs=135.8
Q ss_pred eEEEEecCCCCCCcHHHHHHHHhhc----CCCEEEEEecCcch-hhhcccCCceeeecccccccccCCCchhhhhhcchh
Q 016016 87 KIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAA-PVIKSYSPELIVHPILEESYNISGLEDEERRCISSK 161 (396)
Q Consensus 87 ~vlvIgGSd~~~GA~ilAalaAlr~----GaglVtv~t~~~~~-~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~ 161 (396)
+||+|.+.+.++++++.+++..+.. ++.+.|+.+.+... .... + +.++++
T Consensus 3 ~il~i~~~~~~G~~g~~~~~~~l~~~g~~~~~~~T~~~s~~t~~~~~~---------g----------------~~~~~~ 57 (286)
T PRK05756 3 NILSIQSHVVYGHVGNSAAVFPMQRLGVNVWPLNTVQFSNHTGYGKWT---------G----------------CVMPPS 57 (286)
T ss_pred cEEEEeceeecccccchhHHHHHHHcCCcceeeceEeecCCCCCCCcc---------C----------------eeCCHH
Confidence 7999999999999999999866655 45777777776543 1110 0 011122
Q ss_pred HHHHH-HHH-----hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC--CCEEEecCccc----ccccc--hhhh-cC-
Q 016016 162 ILAEV-DKW-----MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGLF----LVTNS--IDLV-SG- 225 (396)
Q Consensus 162 ~~~ev-~~~-----~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~--~PvVLDpdgl~----ll~~~--~~ll-~~- 225 (396)
.++++ +.+ +..+|++++| +..+.+..+.+.++++.+++.+ +.+|+||+-.. .+... .+.+ +.
T Consensus 58 ~~~~~~~~~~~~~~l~~~~~v~~G--~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~l 135 (286)
T PRK05756 58 HLTEIVQGIADIGWLGECDAVLSG--YLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRA 135 (286)
T ss_pred HHHHHHHHHHhcCccccCCEEEEC--CCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhh
Confidence 22222 222 3478988885 4557777888888888776544 56899997332 22111 1222 21
Q ss_pred C-CCeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc----------eEEEcCCeEEEEeccCC
Q 016016 226 Y-PLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS----------DLISDGEIAKSVSIYGS 294 (396)
Q Consensus 226 ~-~~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~----------dvI~d~~~~~~i~~~G~ 294 (396)
. .+++||||..|+..|+|.+. .+.++..+.++++.+ .++..|++|+.+ .++.++++.+.+...-.
T Consensus 136 l~~adiitpN~~Ea~~L~g~~~---~~~~~~~~~~~~l~~-~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 211 (286)
T PRK05756 136 LPAADIITPNLFELEWLSGRPV---ETLEDAVAAARALIA-RGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLV 211 (286)
T ss_pred cccccEecCCHHHHHHHhCCCc---CCHHHHHHHHHHHHH-hCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCcc
Confidence 2 37999999999999998642 122456677888874 566677888753 23445555544432222
Q ss_pred CC--CCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 295 PR--RCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 295 ~~--~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
+. .++|+||.|++.+++.++.|.++++|+.
T Consensus 212 ~~~v~~~GaGD~f~a~~~a~l~~g~~~~~al~ 243 (286)
T PRK05756 212 DFMRQPVGVGDLTSALFLARLLQGGSLEEALE 243 (286)
T ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Confidence 22 6899999999999999999999998887
No 31
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.57 E-value=8.6e-14 Score=136.78 Aligned_cols=216 Identities=17% Similarity=0.098 Sum_probs=133.6
Q ss_pred CeEEEEecCCCCCCcHHHHHHHHhhc-CCCEEEEEecC--cchhhhcccCCceeeecccccccccCCCchhhhhhcchhH
Q 016016 86 GKIAVIGGCREYTGAPYFAAISALKI-GADLSHVFCTK--DAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKI 162 (396)
Q Consensus 86 G~vlvIgGSd~~~GA~ilAalaAlr~-GaglVtv~t~~--~~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~ 162 (396)
.+|++|.+.+++++++..++...++. |....++.|.+ +... .+. ..+ +.++++.
T Consensus 5 ~~vl~i~~~~~~G~~G~~~~~~~l~~~g~~~~~~~tv~ls~~~~------~~~-~~g----------------~~i~~~~ 61 (296)
T PTZ00344 5 KKVLSIQSHVTHGYVGNRAATFPLQLLGFDVDFVNTVQLSNHTG------YPV-IKG----------------HRLDLNE 61 (296)
T ss_pred CeEEEEcceeecccccchhHHHHHHHcCCcceeeccEecCCCCC------CCC-ccC----------------eeCCHHH
Confidence 48999999999999999999977766 87777776554 2111 111 110 1233333
Q ss_pred HH-HHHHHh-----ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC--CCEEEecCccc---ccccc--hhhhcC-C-C
Q 016016 163 LA-EVDKWM-----ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGLF---LVTNS--IDLVSG-Y-P 227 (396)
Q Consensus 163 ~~-ev~~~~-----~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~--~PvVLDpdgl~---ll~~~--~~ll~~-~-~ 227 (396)
++ .++.|. .+++++++| +..+.+..+.+.++++.+++.+ +++|+||+-.. ++... .+.++. + .
T Consensus 62 ~~~~l~~l~~~~~~~~~~~v~sG--~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~ 139 (296)
T PTZ00344 62 LITLMDGLRANNLLSDYTYVLTG--YINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPY 139 (296)
T ss_pred HHHHHHHHHhcCCcccCCEEEEC--CCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhh
Confidence 33 333332 246777775 4557888888888887665444 57999998521 11111 122232 2 3
Q ss_pred CeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc---e------EEE--cC----CeEEEEecc
Q 016016 228 LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS---D------LIS--DG----EIAKSVSIY 292 (396)
Q Consensus 228 ~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~---d------vI~--d~----~~~~~i~~~ 292 (396)
+++||||..|+..|+|.+. .+.++..+.++++.+ .++..|++||.+ + ++. +. +..+.+...
T Consensus 140 ~dii~pN~~E~~~L~g~~~---~~~~~~~~~~~~l~~-~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (296)
T PTZ00344 140 ADVITPNQFEASLLSGVEV---KDLSDALEAIDWFHE-QGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVP 215 (296)
T ss_pred CCEEeCCHHHHHHHhCCCC---CCHHHHHHHHHHHHH-hCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEecc
Confidence 7999999999999998642 122345667777765 466667778432 1 222 11 223333211
Q ss_pred CCCCCCCCchHHHHHHHHHHHhccCChHHHHH--HHhhhhh
Q 016016 293 GSPRRCGGQGDILSGSVAVFLSWARAKGKATT--RLYYNLS 331 (396)
Q Consensus 293 G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~--~~y~~~~ 331 (396)
-.+..++||||+|++.++++++.| ++++|+. ..|++..
T Consensus 216 ~~~~~~~GaGD~f~A~~~a~l~~g-~~~~a~~~A~a~~~~~ 255 (296)
T PTZ00344 216 YIEGRYTGTGDLFAALLLAFSHQH-PMDLAVGKAMGVLQDI 255 (296)
T ss_pred ccCCCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 112357999999999999999999 8888877 2444433
No 32
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.57 E-value=1.7e-13 Score=133.84 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=101.1
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhc--CCCCEEEecCccc----ccccc--hhhhc-C-CC-CeeecCCHHHHHH
Q 016016 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQ--SNVPIVIDGDGLF----LVTNS--IDLVS-G-YP-LAVLTPNVNEYKR 240 (396)
Q Consensus 172 ~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~--~~~PvVLDpdgl~----ll~~~--~~ll~-~-~~-~~VITPN~~E~a~ 240 (396)
.+|++++| +..+.+..+.+.++++..+. .+.|+|+||+-.. ++... .+.++ . ++ .++||||..|++.
T Consensus 88 ~~d~i~~G--~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~ 165 (281)
T PRK08176 88 QLRAVTTG--YMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEI 165 (281)
T ss_pred cCCEEEEC--CCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHH
Confidence 68999995 55688888888888876543 4678999997221 22111 12222 2 23 6999999999999
Q ss_pred HhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCce---------EEEcCCeEEEEeccCCCCCCCCchHHHHHHHHH
Q 016016 241 LVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSD---------LISDGEIAKSVSIYGSPRRCGGQGDILSGSVAV 311 (396)
Q Consensus 241 L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~d---------vI~d~~~~~~i~~~G~~~~t~GTGDvLAGiIAa 311 (396)
|+|.+. .+.++..+.+++|.+ .|+..|++||.+. ++++++..+.+...-.+..++|+||+|++.+++
T Consensus 166 L~g~~~---~~~~~~~~~~~~l~~-~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~faa~~~a 241 (281)
T PRK08176 166 LTGKPC---RTLDSAIAAAKSLLS-DTLKWVVITSAAGNEENQEMQVVVVTADSVNVISHPRVDTDLKGTGDLFCAELVS 241 (281)
T ss_pred HhCCCC---CCHHHHHHHHHHHHh-cCCCEEEEeeccCCCCCCcEEEEEEeCCceEEEecCccCCCCCChhHHHHHHHHH
Confidence 998642 123456677888875 5767788898642 445555433332111122589999999999999
Q ss_pred HHhccCChHHHHHH
Q 016016 312 FLSWARAKGKATTR 325 (396)
Q Consensus 312 ~LA~g~~l~~A~~~ 325 (396)
.+++|.++++|+..
T Consensus 242 ~l~~g~~l~~Av~~ 255 (281)
T PRK08176 242 GLLKGKALTDAAHR 255 (281)
T ss_pred HHhcCCCHHHHHHH
Confidence 99999999988873
No 33
>PLN02978 pyridoxal kinase
Probab=99.36 E-value=2.7e-11 Score=120.01 Aligned_cols=147 Identities=22% Similarity=0.226 Sum_probs=96.3
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhc--CCCCEEEecCccc---ccccc--hhhhc-C-CC-CeeecCCHHHHHHH
Q 016016 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQ--SNVPIVIDGDGLF---LVTNS--IDLVS-G-YP-LAVLTPNVNEYKRL 241 (396)
Q Consensus 172 ~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~--~~~PvVLDpdgl~---ll~~~--~~ll~-~-~~-~~VITPN~~E~a~L 241 (396)
.+|++++| +..+.+..+.+.++++.+++ .++++|+||+... ++... .+.++ . ++ .+|||||..|+..|
T Consensus 86 ~~~ai~~G--~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 86 FYTHLLTG--YIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred ccCEEEec--ccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 47899985 45577888888888887765 4578999997321 22111 11121 1 33 69999999999999
Q ss_pred hcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc---eE-EEc------C--CeEEEEeccCCCCCCCCchHHHHHHH
Q 016016 242 VQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS---DL-ISD------G--EIAKSVSIYGSPRRCGGQGDILSGSV 309 (396)
Q Consensus 242 ~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~---dv-I~d------~--~~~~~i~~~G~~~~t~GTGDvLAGiI 309 (396)
+|.+. .+.++..+.++++.+ .++..|++||.+ .+ +.. + +..+.+...-.+...+||||+|++++
T Consensus 164 ~g~~~---~~~~~~~~a~~~l~~-~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~GtGD~fsA~l 239 (308)
T PLN02978 164 TGIRI---VTEEDAREACAILHA-AGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAYFTGTGDLMAALL 239 (308)
T ss_pred hCCCC---CCHHHHHHHHHHHHH-hCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCCCCCchHHHHHHH
Confidence 98642 122355677777765 466677777733 22 211 1 23444432112334789999999999
Q ss_pred HHHHhcc-CChHHHHH
Q 016016 310 AVFLSWA-RAKGKATT 324 (396)
Q Consensus 310 Aa~LA~g-~~l~~A~~ 324 (396)
+++++.| .++++|+.
T Consensus 240 aa~l~~g~~~l~~A~~ 255 (308)
T PLN02978 240 LGWSHKYPDNLDKAAE 255 (308)
T ss_pred HHHHhcCCcCHHHHHH
Confidence 9999998 78888877
No 34
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.31 E-value=1.8e-10 Score=112.37 Aligned_cols=149 Identities=18% Similarity=0.199 Sum_probs=97.3
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC--CCEEEecCccc----cc-ccc-hhhhc-C-CC-CeeecCCHHHHH
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGLF----LV-TNS-IDLVS-G-YP-LAVLTPNVNEYK 239 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~--~PvVLDpdgl~----ll-~~~-~~ll~-~-~~-~~VITPN~~E~a 239 (396)
..+|++++| +..+.+..+.+.++++.+++.+ +++|+||+-.. .+ ... .+.++ . .+ .++||||..|+.
T Consensus 73 ~~~d~v~~G--~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~ 150 (286)
T TIGR00687 73 NQCDAVLSG--YLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELE 150 (286)
T ss_pred ccCCEEEEC--CCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHH
Confidence 478998775 4557777788888888776543 67999995221 11 111 12332 2 24 699999999999
Q ss_pred HHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcC--Cc---------eEEEcCCeEEEEe-ccCC-CCCCCCchHHHH
Q 016016 240 RLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKG--KS---------DLISDGEIAKSVS-IYGS-PRRCGGQGDILS 306 (396)
Q Consensus 240 ~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG--~~---------dvI~d~~~~~~i~-~~G~-~~~t~GTGDvLA 306 (396)
.|+|.+. .+.++..+.++++.+ .++..|++|. .. .++.+++..+.+. +.-. ...++|+||.|+
T Consensus 151 ~L~g~~~---~~~~~~~~~~~~l~~-~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~ 226 (286)
T TIGR00687 151 LLTGRKI---NTVEEALAAADALIA-MGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIA 226 (286)
T ss_pred HHhCCCc---CCHHHHHHHHHHHHH-hCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHH
Confidence 9998652 122456677777765 4555667782 21 1334444444442 1111 135799999999
Q ss_pred HHHHHHHhccCChHHHHHH
Q 016016 307 GSVAVFLSWARAKGKATTR 325 (396)
Q Consensus 307 GiIAa~LA~g~~l~~A~~~ 325 (396)
+.+.+.+.+|.++++|+..
T Consensus 227 A~~l~~l~~g~~~~~al~~ 245 (286)
T TIGR00687 227 ALLLATLLHGNSLKEALEK 245 (286)
T ss_pred HHHHHHHhcCCCHHHHHHH
Confidence 9999999999999988773
No 35
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.23 E-value=5.7e-10 Score=108.34 Aligned_cols=150 Identities=21% Similarity=0.183 Sum_probs=102.4
Q ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC--CCEEEecCcc---cccccc--hhhhc-C-CC-CeeecCCHHHH
Q 016016 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGL---FLVTNS--IDLVS-G-YP-LAVLTPNVNEY 238 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~--~PvVLDpdgl---~ll~~~--~~ll~-~-~~-~~VITPN~~E~ 238 (396)
+...+|++..|. ++ +.++.+.+..+++..++.+ ..+++||+.. +++... ...+. + .| .++||||..|+
T Consensus 70 ~~~~~davltGY-lg-s~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fEL 147 (281)
T COG2240 70 KLGECDAVLTGY-LG-SAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFEL 147 (281)
T ss_pred cccccCEEEEcc-CC-CHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHH
Confidence 556899999976 54 7778888888888877654 3489999622 343322 12222 2 34 59999999999
Q ss_pred HHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCCeEEEEecc--CCCCCCCCchHHHHHHH
Q 016016 239 KRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGEIAKSVSIY--GSPRRCGGQGDILSGSV 309 (396)
Q Consensus 239 a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~-------dvI~d~~~~~~i~~~--G~~~~t~GTGDvLAGiI 309 (396)
+.|.|.+. .+.+|.+++++.|.+ ++...|++|... .+++.+......... ..+....||||.+|+++
T Consensus 148 e~Ltg~~~---~~~~da~~aa~~L~~-~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~GtGDL~sall 223 (281)
T COG2240 148 EILTGKPL---NTLDDAVKAARKLGA-DGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHISPLVPFIPNGTGDLFSALL 223 (281)
T ss_pred HHHhCCCC---CCHHHHHHHHHHHhh-cCCCEEEEecccccCCCCceEEEeccchhhhhhhhhcCCCCCCCchHHHHHHH
Confidence 99999763 234578888888876 566678888743 233332221111111 22335789999999999
Q ss_pred HHHHhccCChHHHHH
Q 016016 310 AVFLSWARAKGKATT 324 (396)
Q Consensus 310 Aa~LA~g~~l~~A~~ 324 (396)
.+-+-.|.++++|..
T Consensus 224 la~lL~g~~~~~al~ 238 (281)
T COG2240 224 LARLLEGLSLTQALE 238 (281)
T ss_pred HHHHHcCCCHHHHHH
Confidence 999999998887766
No 36
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=4.9e-10 Score=112.60 Aligned_cols=215 Identities=20% Similarity=0.271 Sum_probs=138.1
Q ss_pred CCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcch-hhhcccCCceeeecccccccccCCCchhhhhhcchhH
Q 016016 84 QAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA-PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKI 162 (396)
Q Consensus 84 ~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~-~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~ 162 (396)
.-.-++++|= .-.|..+...+.+.+.-++++..-+...+. .-+.++.-.++.....+.+ ........
T Consensus 66 ~a~l~GvvG~--Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~----------~~~~~~~l 133 (467)
T COG2870 66 NAYLVGVVGK--DEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKF----------PIEDENKL 133 (467)
T ss_pred CEEEEEeecc--chhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccC----------cchhHHHH
Confidence 3344455554 456777777778777777877766543321 1132333333333221100 00122344
Q ss_pred HHHHHHHhccCCEEEEc---CCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCC-CCeeecCCHHHH
Q 016016 163 LAEVDKWMERFDCLVVG---PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY-PLAVLTPNVNEY 238 (396)
Q Consensus 163 ~~ev~~~~~~~dalvIG---~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~-~~~VITPN~~E~ 238 (396)
++.+.+.+..+|++++. -|..++ ++.+++.+++.++|+++||-|-..-. | ..++||||..|+
T Consensus 134 l~~~~~~l~~~~~vVLSDY~KG~L~~------~q~~I~~ar~~~~pVLvDPKg~Df~~--------Y~GAtLiTPN~~E~ 199 (467)
T COG2870 134 LEKIKNALKSFDALVLSDYAKGVLTN------VQKMIDLAREAGIPVLVDPKGKDFEK--------YRGATLITPNLKEF 199 (467)
T ss_pred HHHHHHHhhcCCEEEEeccccccchh------HHHHHHHHHHcCCcEEECCCCcchhh--------hCCCeecCCCHHHH
Confidence 45677778899999997 444433 44556667788999999998865422 4 479999999999
Q ss_pred HHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC--c-eEEEcCCeEEEEeccCCCC-CCCCchHHHHHHHHHHHh
Q 016016 239 KRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK--S-DLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLS 314 (396)
Q Consensus 239 a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~--~-dvI~d~~~~~~i~~~G~~~-~t~GTGDvLAGiIAa~LA 314 (396)
....|.. .++++..+.+++|.++++...+++|=. + +++..++. ..+...-... .++|.||+.-+.+|+.+|
T Consensus 200 ~~~vg~~----~~e~el~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~~-~h~pt~AkEVyDVTGAGDTVIa~la~~la 274 (467)
T COG2870 200 EEAVGKC----KSEEELEERGQKLKEELDLSALLVTRSEKGMTLFQEGKP-LHFPARAKEVYDVTGAGDTVIAVLAAALA 274 (467)
T ss_pred HHHHccc----ccHHHHHHHHHHHHHhhCcceEEEEeccCCceeecCCcc-cccchhheeeeeccCCCchHHHHHHHHHH
Confidence 9999875 244567788999999887666666632 1 34433332 3332111111 599999999999999999
Q ss_pred ccCChHHHHHHHhhh
Q 016016 315 WARAKGKATTRLYYN 329 (396)
Q Consensus 315 ~g~~l~~A~~~~y~~ 329 (396)
.|.++++||..+...
T Consensus 275 aG~s~~eAc~lAN~A 289 (467)
T COG2870 275 AGASLEEACELANAA 289 (467)
T ss_pred cCCCHHHHHHHhhhh
Confidence 999999999866554
No 37
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.06 E-value=6.2e-09 Score=102.02 Aligned_cols=148 Identities=17% Similarity=0.212 Sum_probs=96.3
Q ss_pred HHHHHHhccCCEEEEcCCC-C-CCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHH
Q 016016 164 AEVDKWMERFDCLVVGPGL-G-RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRL 241 (396)
Q Consensus 164 ~ev~~~~~~~dalvIG~Gl-~-~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L 241 (396)
+.+.+.++.+|++++.... + ... +.+..+++.+++.++|+++||.+... ..++ ..++++||..|+..|
T Consensus 135 ~~~~~~l~~~~~v~~~~~~~~~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~-----~~~~--~~d~l~~n~~E~~~l 204 (315)
T TIGR02198 135 AAIREQLASADAVVLSDYAKGVLTP---RVVQEVIAAARKHGKPVLVDPKGKDF-----SRYR--GATLITPNRKEAEAA 204 (315)
T ss_pred HHHHhhhhhCCEEEEecCCCCccCH---HHHHHHHHHHHhcCCCEEEeCCCcch-----hhcC--CCcEECCCHHHHHHH
Confidence 3445556889999995211 1 122 24556667777889999999975421 1221 368999999999999
Q ss_pred hcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC--ceEEEc-CCeEEEEec-cCCCCCCCCchHHHHHHHHHHHhccC
Q 016016 242 VQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK--SDLISD-GEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLSWAR 317 (396)
Q Consensus 242 ~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~--~dvI~d-~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~ 317 (396)
++.. .+..+..+.++++.+++|...|++|.+ +.++.+ ++..+.+.. .-....++|+||.|.|.+.+.+.+|.
T Consensus 205 ~~~~----~~~~~~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~~g~ 280 (315)
T TIGR02198 205 VGAC----DTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALAAGA 280 (315)
T ss_pred hCCC----CCHHHHHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHHcCC
Confidence 8831 123456677777776666555566643 345555 334454431 11222699999988888888888999
Q ss_pred ChHHHHHH
Q 016016 318 AKGKATTR 325 (396)
Q Consensus 318 ~l~~A~~~ 325 (396)
++++|+..
T Consensus 281 ~~~~al~~ 288 (315)
T TIGR02198 281 SLEEACRL 288 (315)
T ss_pred CHHHHHHH
Confidence 99888763
No 38
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.05 E-value=1.5e-08 Score=99.41 Aligned_cols=148 Identities=20% Similarity=0.194 Sum_probs=93.6
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcccccCC
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCE 249 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~~~~ 249 (396)
++..+.+++...+.. ....+.+.++++.+++.++++++||.+.... ..+....+++++||..|+..|++.+.
T Consensus 128 ~~~~~~~~i~g~~~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~~~~~i~~n~~E~~~l~g~~~--- 199 (309)
T PRK10294 128 IESGAILVISGSLPP-GVKLEKLTQLISAAQKQGIRCIIDSSGDALS----AALAIGNIELVKPNQKELSALVNRDL--- 199 (309)
T ss_pred cCCCCEEEEeCCCCC-CCCHHHHHHHHHHHHHcCCeEEEeCCCHHHH----HHHhcCCCeEECCCHHHHHHHhCCCC---
Confidence 467888888644432 1122456677777778899999999754311 12211136899999999999998642
Q ss_pred CCCCcHHHHHHHHHHhhCCeEEEEcC-C-ceEEEcCCeEEEEecc-CCCCCCCCchHHHHHHHHHHHhccCChHHHHHH
Q 016016 250 VNDRDAPELLQSLAKQIGGVTILQKG-K-SDLISDGEIAKSVSIY-GSPRRCGGQGDILSGSVAVFLSWARAKGKATTR 325 (396)
Q Consensus 250 ~~~~d~~~~a~~La~~~g~vvVllKG-~-~dvI~d~~~~~~i~~~-G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~~ 325 (396)
.+.++..++++++.+..+...|++|. . +.++.++++.+.+.+. .....++|+||.+.+.+.+.+.+|.++++|+..
T Consensus 200 ~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~g~~~~~al~~ 278 (309)
T PRK10294 200 TQPDDVRKAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRF 278 (309)
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEecCCCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 12234556777776543333444453 3 4556666555444321 122269999998777777777899999887763
No 39
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.04 E-value=7e-09 Score=108.04 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=98.1
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcc
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQK 244 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~ 244 (396)
++++.++.++++++. ++... ..+.+..+++.+++.++|+++||.+..+. .+ ...++++||..|+..|+|.
T Consensus 136 ~~~~~l~~~~~v~is-~~~~~--~~~~~~~~~~~~k~~g~~vv~Dp~~~~~~-----~~--~~~dil~pN~~Ea~~l~g~ 205 (473)
T PRK11316 136 RIEQALPSIGALVLS-DYAKG--ALASVQAMIQLARKAGVPVLIDPKGTDFE-----RY--RGATLLTPNLSEFEAVVGK 205 (473)
T ss_pred HHHHHhccCCEEEEe-cCCcc--chhHHHHHHHHHHhcCCeEEEeCCCCCcc-----cc--CCCeEECcCHHHHHHHhCC
Confidence 456667889999885 33211 12345566666777899999999864221 11 1368999999999999884
Q ss_pred cccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC--ceEEEcCCe-EEEEec-cCCCCCCCCchHHHHHHHHHHHhccCChH
Q 016016 245 VLNCEVNDRDAPELLQSLAKQIGGVTILQKGK--SDLISDGEI-AKSVSI-YGSPRRCGGQGDILSGSVAVFLSWARAKG 320 (396)
Q Consensus 245 ~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~--~dvI~d~~~-~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~~l~ 320 (396)
. .+.++..+.++++.++++...|++|.+ +.++++++. .+.+.. .-....++|+||.++|.+++.+++|.+++
T Consensus 206 ~----~~~~~~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~g~~~~ 281 (473)
T PRK11316 206 C----KDEAELVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALAAGNSLE 281 (473)
T ss_pred C----CCHHHHHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHHcCCCHH
Confidence 2 122345567778877777655666643 334554443 344421 11222599999999999999999999999
Q ss_pred HHHHHH
Q 016016 321 KATTRL 326 (396)
Q Consensus 321 ~A~~~~ 326 (396)
+|+..+
T Consensus 282 ~al~~A 287 (473)
T PRK11316 282 EACALA 287 (473)
T ss_pred HHHHHH
Confidence 888844
No 40
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=98.99 E-value=3.6e-08 Score=95.89 Aligned_cols=147 Identities=21% Similarity=0.220 Sum_probs=94.2
Q ss_pred HHHhccCCEEEEcCCCCC--CHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcc
Q 016016 167 DKWMERFDCLVVGPGLGR--DPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQK 244 (396)
Q Consensus 167 ~~~~~~~dalvIG~Gl~~--~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~ 244 (396)
.+.++.++.+++..-+.. +. +.+..+++.+++.++++++||....+. +.+. ...+|++||..|+..|++.
T Consensus 122 ~~~l~~~~~v~~~g~~~~~~~~---~~~~~~~~~~~~~~~~v~~D~~~~~~~----~~~~-~~~~i~~~n~~E~~~l~g~ 193 (304)
T TIGR03828 122 RAQLAEGDWLVLSGSLPPGVPP---DFYAELIALAREKGAKVILDTSGEALR----DGLK-AKPFLIKPNDEELEELFGR 193 (304)
T ss_pred HHhccCCCEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECChHHHH----HHHh-cCCcEECcCHHHHHHHhCC
Confidence 335678999998521211 22 245566677777899999999753221 1222 2468999999999999885
Q ss_pred cccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEecc-CCCCCCCCchHHHHHHHHHHHhccCChHH
Q 016016 245 VLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIY-GSPRRCGGQGDILSGSVAVFLSWARAKGK 321 (396)
Q Consensus 245 ~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~-G~~~~t~GTGDvLAGiIAa~LA~g~~l~~ 321 (396)
.. .+.++..+.++.+.+ .+...|++| |. +.+++++++.+.+... -....++|+||.++|.+.+.+..|.++++
T Consensus 194 ~~---~~~~~~~~~~~~l~~-~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g~~~~~ 269 (304)
T TIGR03828 194 EL---KTLEEIIEAARELLD-LGAENVLISLGADGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLESGLSLEE 269 (304)
T ss_pred CC---CCHHHHHHHHHHHHH-cCCCEEEEccCCCCcEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHcCCCHHH
Confidence 42 122345566777764 455456667 43 3455555555544321 11226999999888888888889999998
Q ss_pred HHHH
Q 016016 322 ATTR 325 (396)
Q Consensus 322 A~~~ 325 (396)
|+..
T Consensus 270 a~~~ 273 (304)
T TIGR03828 270 ALRL 273 (304)
T ss_pred HHHH
Confidence 8763
No 41
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=98.99 E-value=3e-08 Score=97.47 Aligned_cols=175 Identities=16% Similarity=0.130 Sum_probs=102.4
Q ss_pred HHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcccc
Q 016016 167 DKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVL 246 (396)
Q Consensus 167 ~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~ 246 (396)
.++++++|++++. |........+.+.++++.+++.+.++++||....+. +.+. ..+++++||..|+..|+|.+.
T Consensus 126 ~~~l~~~d~v~~~-g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~-~~~~~l~~n~~E~~~l~g~~~ 199 (312)
T PRK09513 126 LSWLGQFDMVAVS-GSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSREALV----AGLK-AAPWLVKPNRRELEIWAGRKL 199 (312)
T ss_pred HhhcCCCCEEEEE-CCCCCCCCHHHHHHHHHHHHhcCCEEEEECChHHHH----HHhc-cCCeEEcCCHHHHHHHhCCCC
Confidence 4456889998776 333221122455666777777889999999743211 1222 246899999999999998641
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEeccC-CCCCCCCchHHHHHHHHHHHhccCChHHHH
Q 016016 247 NCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIYG-SPRRCGGQGDILSGSVAVFLSWARAKGKAT 323 (396)
Q Consensus 247 ~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~G-~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~ 323 (396)
.+.++..+.++.+.+ +++..|++| |. +.++.++++.+.+.+.- ....++|.||.+.|.+.+.+..|.++++|+
T Consensus 200 ---~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~ 275 (312)
T PRK09513 200 ---PELKDVIEAAHALRE-QGIAHVVISLGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLMRESSEHTL 275 (312)
T ss_pred ---CCHHHHHHHHHHHHH-cCCCEEEEEeCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 122345556666754 344344444 43 34555544433332211 122699999988777777778999998887
Q ss_pred HHHhhhhhhHhhhhhHhhHHHHHhHHHHHHHHHHH
Q 016016 324 TRLYYNLSFKLGRQLFCFLSLISCLATYSFLMRLL 358 (396)
Q Consensus 324 ~~~y~~~~~~aai~~~~~~~~a~~~a~~~~~~~~~ 358 (396)
+.+. ++++.+.-..-..+..++++.+++
T Consensus 276 ~~A~-------a~Aa~~~~~~~~~~~~~~e~~~~l 303 (312)
T PRK09513 276 RLAT-------AVSALAVSQSNVGITDRPQLAAMM 303 (312)
T ss_pred HHHH-------HHHHHHhhCCCCCCCCHHHHHHHH
Confidence 7322 222222222223344566666655
No 42
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=98.99 E-value=4.4e-08 Score=95.61 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=92.7
Q ss_pred HHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhccccc
Q 016016 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLN 247 (396)
Q Consensus 168 ~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~~ 247 (396)
+.++.+|++++..-+..+ ...+.+..+++.+++.++|+++||....+. +.+. ...++++||..|+..|+|.+.
T Consensus 123 ~~~~~~~~v~i~~~~~~~-~~~~~~~~~~~~~~~~g~~v~~D~~~~~~~----~~~~-~~~dil~~n~~E~~~l~g~~~- 195 (303)
T TIGR03168 123 ELLASGDIVVISGSLPPG-VPPDFYAQLIAIARKRGAKVILDTSGEALR----EALA-AKPFLIKPNHEELEELFGREL- 195 (303)
T ss_pred HhccCCCEEEEeCCCCCC-CCHHHHHHHHHHHHHCCCEEEEECCcHHHH----HHHh-cCCcEECCCHHHHHHHhCCCC-
Confidence 446789999985211111 012345566677778899999999753221 1222 246899999999999998642
Q ss_pred CCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEeccCCC-CCCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 248 CEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIYGSP-RRCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 248 ~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~G~~-~~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
.+.++..+.++.+.+. +...|++| |. +.++.++++.+.+.....+ ..++|+||.++|.+.+.+..|.++++|++
T Consensus 196 --~~~~~~~~~~~~l~~~-g~~~vviT~g~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~ 272 (303)
T TIGR03168 196 --KTEEEIIEAARELLDR-GAENVLVSLGADGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLARGLSLEEALR 272 (303)
T ss_pred --CCHHHHHHHHHHHHHc-CCCEEEEeecCCCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 1223455666666554 33233444 43 4455666665555311111 25999999877777777778999998877
Q ss_pred HH
Q 016016 325 RL 326 (396)
Q Consensus 325 ~~ 326 (396)
.+
T Consensus 273 ~A 274 (303)
T TIGR03168 273 FA 274 (303)
T ss_pred HH
Confidence 43
No 43
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=98.98 E-value=6.5e-08 Score=93.42 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=96.0
Q ss_pred cchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHH
Q 016016 158 ISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNE 237 (396)
Q Consensus 158 is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E 237 (396)
++.+.++++.+.++.+|.+++.... .. +.+..+++.+++.++++++||...... ..++++ ..++|+||..|
T Consensus 115 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~--~~~~~~--~~dil~~n~~E 185 (292)
T cd01174 115 LTPADVDAALELIAAADVLLLQLEI--PL---ETVLAALRAARRAGVTVILNPAPARPL--PAELLA--LVDILVPNETE 185 (292)
T ss_pred CCHHHHHHHHHhcccCCEEEEeCCC--CH---HHHHHHHHHHHhcCCEEEEeCCCcCcC--cHHHHh--hCCEEeeCHHH
Confidence 3444455555667889999986322 22 245566677778899999999743211 112332 36899999999
Q ss_pred HHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcC-C-ceEEEcCCeEEEEec-cCCCCCCCCchHHHHHHHHHHHh
Q 016016 238 YKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKG-K-SDLISDGEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLS 314 (396)
Q Consensus 238 ~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG-~-~dvI~d~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA 314 (396)
+..|++... .+.++..+.++.+.+ .++..|++|. . +.++.+++..+.+.. .-+...++|+||.+.+.+...+.
T Consensus 186 ~~~l~~~~~---~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~ 261 (292)
T cd01174 186 AALLTGIEV---TDEEDAEKAARLLLA-KGVKNVIVTLGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALA 261 (292)
T ss_pred HHHHhCCCC---CCHHHHHHHHHHHHH-cCCCEEEEEeCCCceEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHH
Confidence 999988642 122345566677654 3444555564 3 345556555554431 12223699999976666666667
Q ss_pred ccCChHHHHH
Q 016016 315 WARAKGKATT 324 (396)
Q Consensus 315 ~g~~l~~A~~ 324 (396)
+|.++++|+.
T Consensus 262 ~g~~~~~al~ 271 (292)
T cd01174 262 RGLSLEEAIR 271 (292)
T ss_pred cCCCHHHHHH
Confidence 8888887766
No 44
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=98.92 E-value=1.2e-07 Score=91.87 Aligned_cols=148 Identities=17% Similarity=0.200 Sum_probs=91.7
Q ss_pred HHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcccc
Q 016016 167 DKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVL 246 (396)
Q Consensus 167 ~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~ 246 (396)
.+.++++|++++.. ........+.+..+++.+++.++|+++||+...+. +.+. ..+++++||..|+..|++...
T Consensus 123 ~~~~~~~~~~~i~g-~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~~~----~~~~-~~~dil~~n~~E~~~l~~~~~ 196 (289)
T cd01164 123 KALLKKGDIVVLSG-SLPPGVPADFYAELVRLAREKGARVILDTSGEALL----AALA-AKPFLIKPNREELEELFGRPL 196 (289)
T ss_pred HHhcCCCCEEEEeC-CCCCCcCHHHHHHHHHHHHHcCCeEEEECChHHHH----HHHh-cCCcEECCCHHHHHHHhCCCC
Confidence 34456899999852 22111111244455566667889999999753221 2332 246899999999999988541
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEeccCCC-CCCCCchHHHHHHHHHHHhccCChHHHH
Q 016016 247 NCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIYGSP-RRCGGQGDILSGSVAVFLSWARAKGKAT 323 (396)
Q Consensus 247 ~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~G~~-~~t~GTGDvLAGiIAa~LA~g~~l~~A~ 323 (396)
.+..+..+.++.+.++ ++..|++| |. +.++.++++.+.+.....+ ..++|+||.+++.+...+..|.++++|+
T Consensus 197 ---~~~~~~~~~~~~l~~~-g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~~~~a~ 272 (289)
T cd01164 197 ---GDEEDVIAAARKLIER-GAENVLVSLGADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQGLSLEEAL 272 (289)
T ss_pred ---CCHHHHHHHHHHHHHc-CCCEEEEecCCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 1224566777777765 33233444 44 3455566555555322222 2699999988777777777888888776
Q ss_pred H
Q 016016 324 T 324 (396)
Q Consensus 324 ~ 324 (396)
.
T Consensus 273 ~ 273 (289)
T cd01164 273 R 273 (289)
T ss_pred H
Confidence 6
No 45
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=98.91 E-value=2e-07 Score=90.62 Aligned_cols=147 Identities=16% Similarity=0.264 Sum_probs=93.3
Q ss_pred HHHHHhccCCEEEEc-CCCC-CCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHh
Q 016016 165 EVDKWMERFDCLVVG-PGLG-RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242 (396)
Q Consensus 165 ev~~~~~~~dalvIG-~Gl~-~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~ 242 (396)
.+.+.++.+|.++++ .+.+ .+. +.+..+++.+++.++++++||..... ..+. .+++|+||..|+..|+
T Consensus 127 ~~~~~l~~~~~v~~s~~~~~~~~~---~~~~~~~~~a~~~~~~v~~D~~~~~~-----~~~~--~~d~l~~n~~E~~~l~ 196 (304)
T cd01172 127 RIAERLPEADVVILSDYGKGVLTP---RVIEALIAAARELGIPVLVDPKGRDY-----SKYR--GATLLTPNEKEAREAL 196 (304)
T ss_pred HHHHhhccCCEEEEEcCCCCccCH---HHHHHHHHHHHhcCCCEEEeCCCcch-----hhcc--CCcEeCCCHHHHHHHh
Confidence 444556899999984 2211 122 24555666677789999999976432 1221 3689999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEc-CCeEEEEecc-CCCCCCCCchHHHHHHHHHHHhccCC
Q 016016 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISD-GEIAKSVSIY-GSPRRCGGQGDILSGSVAVFLSWARA 318 (396)
Q Consensus 243 g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d-~~~~~~i~~~-G~~~~t~GTGDvLAGiIAa~LA~g~~ 318 (396)
+... .+..+..+.++++.++.++..|++| |. +.++.+ ++..+.+... .....++|.||.+.+.+...+..|.+
T Consensus 197 ~~~~---~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~~g~~ 273 (304)
T cd01172 197 GDEI---NDDDELEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALAAGAD 273 (304)
T ss_pred CCCC---CChHHHHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCC
Confidence 8541 1223455667777655555445555 33 455666 5555555321 12226999999766666666678888
Q ss_pred hHHHHH
Q 016016 319 KGKATT 324 (396)
Q Consensus 319 l~~A~~ 324 (396)
+++|+.
T Consensus 274 ~~~al~ 279 (304)
T cd01172 274 LEEAAF 279 (304)
T ss_pred HHHHHH
Confidence 888776
No 46
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=98.88 E-value=3.1e-08 Score=95.63 Aligned_cols=150 Identities=16% Similarity=0.056 Sum_probs=94.6
Q ss_pred HhccCCEEEEcCCCC-CCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccc---hhhhcC-C-CCeeecCCHHHHHHHh
Q 016016 169 WMERFDCLVVGPGLG-RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNS---IDLVSG-Y-PLAVLTPNVNEYKRLV 242 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~-~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~---~~ll~~-~-~~~VITPN~~E~a~L~ 242 (396)
.++.+|+++++.=.. ......+.+..+++.+++.++++++||.....+... .+.++. + ..++|+||..|+..|+
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l~ 200 (294)
T cd01166 121 ALAGADHLHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALL 200 (294)
T ss_pred HHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHHh
Confidence 357899999873221 122223566677777777899999999753321000 011221 2 3689999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC--ceEEEcCCeEEEEec-cCCCCCCCCchHHHHHHHHHHHhccCCh
Q 016016 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK--SDLISDGEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLSWARAK 319 (396)
Q Consensus 243 g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~--~dvI~d~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~~l 319 (396)
+.. . ..+..+.++++ ..++..|++|.+ +.++.+++..+.+.. ..+...++|+||+|.+.+.+.+++|.++
T Consensus 201 ~~~----~-~~~~~~~~~~l--~~g~~~viit~G~~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~~ 273 (294)
T cd01166 201 GDE----D-PTDAAERALAL--ALGVKAVVVKLGAEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLAGLLEGWDL 273 (294)
T ss_pred CCC----C-chhHHHHHHhh--cCCccEEEEEEcCCceEEEECCceEEeCCCCcccccCCCchHHHHHHHHHHHHcCCCH
Confidence 753 1 22445555555 345545566643 345556666555531 1122369999999988888888999999
Q ss_pred HHHHHH
Q 016016 320 GKATTR 325 (396)
Q Consensus 320 ~~A~~~ 325 (396)
++|+..
T Consensus 274 ~~a~~~ 279 (294)
T cd01166 274 EEALRF 279 (294)
T ss_pred HHHHHH
Confidence 988773
No 47
>PRK11142 ribokinase; Provisional
Probab=98.88 E-value=1.5e-07 Score=91.65 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=94.0
Q ss_pred hcchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHH
Q 016016 157 CISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVN 236 (396)
Q Consensus 157 ~is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~ 236 (396)
.++++.++.+.+.+..++.+++.... .. +.+..+++.+++.++|+++||.....+. ..+++ .+++++||..
T Consensus 117 ~~~~~~~~~~~~~l~~~~~v~~~~~~--~~---~~~~~~~~~a~~~g~~v~~d~~~~~~~~--~~~~~--~~dil~~n~~ 187 (306)
T PRK11142 117 ALTPALVEAHRELIANADALLMQLET--PL---ETVLAAAKIAKQHGTKVILNPAPARELP--DELLA--LVDIITPNET 187 (306)
T ss_pred cCCHHHHHHHHhhhccCCEEEEeCCC--CH---HHHHHHHHHHHHcCCEEEEECCCCcccC--HHHHh--hCCEEcCCHH
Confidence 34555555555666889999986432 22 2445566667778999999997432111 12332 3689999999
Q ss_pred HHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEecc-CCCCCCCCchHHHHHHHHHHH
Q 016016 237 EYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIY-GSPRRCGGQGDILSGSVAVFL 313 (396)
Q Consensus 237 E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~-G~~~~t~GTGDvLAGiIAa~L 313 (396)
|+..|+|... .+.++..+.++.+.+ .++..|++| |+ +.++.+++..+.+... -....++|+||.+.+.+...+
T Consensus 188 Ea~~l~g~~~---~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l 263 (306)
T PRK11142 188 EAEKLTGIRV---EDDDDAAKAAQVLHQ-KGIETVLITLGSRGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTAL 263 (306)
T ss_pred HHHHHhCCCC---CChHHHHHHHHHHHH-hCCCeEEEEECCCcEEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHH
Confidence 9999988541 122344455666654 344444444 43 3455555554444311 122269999996665555555
Q ss_pred hccCChHHHHH
Q 016016 314 SWARAKGKATT 324 (396)
Q Consensus 314 A~g~~l~~A~~ 324 (396)
.+|.++++|+.
T Consensus 264 ~~g~~~~~al~ 274 (306)
T PRK11142 264 LEGKPLPEAIR 274 (306)
T ss_pred HCCCCHHHHHH
Confidence 68888887766
No 48
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=98.79 E-value=4.4e-07 Score=89.11 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=90.4
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcC-CCCeeecCCHHHHHHHhc
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YPLAVLTPNVNEYKRLVQ 243 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~-~~~~VITPN~~E~a~L~g 243 (396)
++.+.+.++|.+++..-+..... .+.+..+++.+++.++|+++|+..... .+++.. ..+++|+||..|+..|+|
T Consensus 119 ~~~~~~~~~~~v~~~g~~~~~~~-~~~~~~~~~~a~~~g~~v~~D~~~~~~----~~~~~~~~~~dii~~n~~E~~~l~g 193 (309)
T PRK13508 119 HFKQLLESVEVVAISGSLPAGLP-VDYYAQLIELANQAGKPVVLDCSGAAL----QAVLESPYKPTVIKPNIEELSQLLG 193 (309)
T ss_pred HHHHhccCCCEEEEeCCCCCCcC-HHHHHHHHHHHHHCCCEEEEECCcHHH----HHHHhccCCceEEccCHHHHHHHhC
Confidence 44556788999998632221100 134555666677889999999974321 123322 247999999999999988
Q ss_pred ccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEec-cCCCCCCCCchHHHHHHHHHHHhccCChH
Q 016016 244 KVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLSWARAKG 320 (396)
Q Consensus 244 ~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~~l~ 320 (396)
.+.. .+.++..+.++++.+ .++..|++| |. +.++.++++.+.+.. .-....++|.||.+.+.+.+.+..|.+++
T Consensus 194 ~~~~--~~~~~~~~~~~~~~~-~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~g~~~~ 270 (309)
T PRK13508 194 KEVS--EDLDELKEVLQQPLF-EGIEWIIVSLGADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLHQEDDA 270 (309)
T ss_pred CCCC--CCHHHHHHHHHHHHH-cCCCEEEEecCCCceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHHcCCCHH
Confidence 5410 011234444555443 244344555 33 345555555544431 11223699999966666666666888888
Q ss_pred HHHHH
Q 016016 321 KATTR 325 (396)
Q Consensus 321 ~A~~~ 325 (396)
+|+..
T Consensus 271 ~al~~ 275 (309)
T PRK13508 271 DLLKK 275 (309)
T ss_pred HHHHH
Confidence 77763
No 49
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=98.79 E-value=4.2e-07 Score=89.27 Aligned_cols=152 Identities=18% Similarity=0.247 Sum_probs=90.8
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCC-CCeeecCCHHHHHHHhc
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY-PLAVLTPNVNEYKRLVQ 243 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~-~~~VITPN~~E~a~L~g 243 (396)
..++++.++|++.+..-+.... ....+..+++.+++.++++++|+....+. .+++.. .+++|+||..|+..|+|
T Consensus 119 ~~~~~~~~~~~v~~~g~~~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~~~~dil~~n~~E~~~l~g 193 (309)
T TIGR01231 119 HFEQLLEKVEVVAISGSLPKGL-PQDYYAQIIERCQNKGVPVVLDCSGATLQ----TVLENPAKPTVIKPNIEELSQLLN 193 (309)
T ss_pred HHHHHhccCCEEEEECCCCCCc-CHHHHHHHHHHHHhCCCeEEEECChHHHH----HHHhccCCCeEEcCCHHHHHHHhC
Confidence 3455668899999863222110 01345566677778899999999754321 223222 36999999999999998
Q ss_pred ccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEeccC-CCCCCCCchHHHHHHHHHHHhccCChH
Q 016016 244 KVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIYG-SPRRCGGQGDILSGSVAVFLSWARAKG 320 (396)
Q Consensus 244 ~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~G-~~~~t~GTGDvLAGiIAa~LA~g~~l~ 320 (396)
.+.. .+.++..+.++++.+ .+...|++| |. +.++.++++.+.+.... ....++|.||.+.|.+.+.+.+|.+++
T Consensus 194 ~~~~--~~~~~~~~~~~~~~~-~g~~~vivT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~g~~~~ 270 (309)
T TIGR01231 194 QELT--EDLESLKQALSQPLF-SGIEWIIVSLGAQGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLNHESDH 270 (309)
T ss_pred CCCC--CCHHHHHHHHHHHHH-cCCCEEEEccCCCceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHcCCCHH
Confidence 5310 111233444444432 344344445 33 44566666555443212 222699999966666666666888888
Q ss_pred HHHH
Q 016016 321 KATT 324 (396)
Q Consensus 321 ~A~~ 324 (396)
+|+.
T Consensus 271 ~a~~ 274 (309)
T TIGR01231 271 DLLK 274 (309)
T ss_pred HHHH
Confidence 7765
No 50
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=98.78 E-value=8.5e-07 Score=85.90 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=95.9
Q ss_pred cchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHH
Q 016016 158 ISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNE 237 (396)
Q Consensus 158 is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E 237 (396)
++.+.++++.+.+..+|++++.... ..+ .+..+++.+++.++++++||....- ....++++ ..++++||..|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~v~~D~~~~~~-~~~~~~~~--~~d~l~~n~~E 181 (293)
T TIGR02152 110 LTPEDIDAAEALIAESDIVLLQLEI--PLE---TVLEAAKIAKKHGVKVILNPAPAIK-DLDDELLS--LVDIITPNETE 181 (293)
T ss_pred CCHHHHHHHHhhhccCCEEEEecCC--CHH---HHHHHHHHHHHcCCEEEEECCcCcc-cchHHHHh--cCCEEccCHHH
Confidence 4555556666667899999987432 222 3455666667788999999974311 00012332 36899999999
Q ss_pred HHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEec-cCCCCCCCCchHHHHHHHHHHHh
Q 016016 238 YKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLS 314 (396)
Q Consensus 238 ~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA 314 (396)
+..|++... .+.++..+.++.+.+ .++..|++| |+ ..++.+++..+.+.. .-....++|+||.|.+.+...+.
T Consensus 182 ~~~l~~~~~---~~~~~~~~~~~~l~~-~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~ 257 (293)
T TIGR02152 182 AEILTGIEV---TDEEDAEKAAEKLLE-KGVKNVIITLGSKGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAFAVALA 257 (293)
T ss_pred HHHHhCCCC---CCcchHHHHHHHHHH-cCCCeEEEEeCCCceEEEeCCceeEccCCCCceeCCCCcHHHHHHHHHHHHH
Confidence 999988642 122345566777765 455445555 33 344555555544421 11222699999966665555667
Q ss_pred ccCChHHHHHH
Q 016016 315 WARAKGKATTR 325 (396)
Q Consensus 315 ~g~~l~~A~~~ 325 (396)
.|.++++|+..
T Consensus 258 ~g~~~~~al~~ 268 (293)
T TIGR02152 258 EGKSLEDAIRF 268 (293)
T ss_pred CCCCHHHHHHH
Confidence 88888877763
No 51
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=98.74 E-value=1.8e-07 Score=84.61 Aligned_cols=129 Identities=22% Similarity=0.309 Sum_probs=75.7
Q ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCC-CCeeecCCHHHHHHHhcccccCCCCC
Q 016016 174 DCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY-PLAVLTPNVNEYKRLVQKVLNCEVND 252 (396)
Q Consensus 174 dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~-~~~VITPN~~E~a~L~g~~~~~~~~~ 252 (396)
|+++++.... . .+.+.++++.+++.++|+++||..........++.+-. .+++++||..|+..|++... .+.
T Consensus 59 ~~v~i~~~~~-~---~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~dvl~~n~~E~~~l~~~~~---~~~ 131 (196)
T cd00287 59 DAVVISGLSP-A---PEAVLDALEEARRRGVPVVLDPGPRAVRLDGEELEKLLPGVDILTPNEEEAEALTGRRD---LEV 131 (196)
T ss_pred cEEEEecccC-c---HHHHHHHHHHHHHcCCeEEEeCCccccccccchHHHHHhhCCEECCCHHHHHHHhCCCC---CCh
Confidence 6677765332 2 12455566667778999999998764433221111112 36899999999999998641 122
Q ss_pred CcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEc-CCeEEEEecc-CCCCCCCCchHHHHHHHH
Q 016016 253 RDAPELLQSLAKQIGGVTILQK-GK-SDLISD-GEIAKSVSIY-GSPRRCGGQGDILSGSVA 310 (396)
Q Consensus 253 ~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d-~~~~~~i~~~-G~~~~t~GTGDvLAGiIA 310 (396)
++..+.++++.++ ++..|++| |. +.++.+ ++..+.+... -....++|+||.+.|.+.
T Consensus 132 ~~~~~~~~~l~~~-g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~ 192 (196)
T cd00287 132 KEAAEAAALLLSK-GPKVVIVTLGEKGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAALA 192 (196)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEECCCccEEEecCCceEEcCCccCCcccCCCchHHHHHHHH
Confidence 3455667777654 33344445 43 456666 5555554311 122269999996554443
No 52
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.71 E-value=1.9e-07 Score=89.79 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=94.4
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcC--CCCEEEecCcc---cccccchhhh---cC--CC-CeeecCCHHHHH
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQS--NVPIVIDGDGL---FLVTNSIDLV---SG--YP-LAVLTPNVNEYK 239 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~--~~PvVLDpdgl---~ll~~~~~ll---~~--~~-~~VITPN~~E~a 239 (396)
..+|++..|. .++...++.+..+++++++. +..+|+||+.. .++... +++ ++ .+ .++||||..|+.
T Consensus 80 ~~Y~~vLTGY--~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~e-elipvYr~~i~~ladiiTPNqFE~E 156 (308)
T KOG2599|consen 80 NKYDAVLTGY--LPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPE-ELIPVYRDLIIPLADIITPNQFEAE 156 (308)
T ss_pred cccceeeeec--cCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccH-HHHHHHHHhhcchhhhcCCcchhhh
Confidence 3789999864 45777777887777776654 45689999743 333322 222 22 24 599999999999
Q ss_pred HHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC----c---eEEE----cCCeEEEEeccCCCCCCCCchHHHHHH
Q 016016 240 RLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK----S---DLIS----DGEIAKSVSIYGSPRRCGGQGDILSGS 308 (396)
Q Consensus 240 ~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~----~---dvI~----d~~~~~~i~~~G~~~~t~GTGDvLAGi 308 (396)
.|.|... .+++|..++.+.|.+++ ...|+++.- . .+++ .+...+.+.-.--+.-.+||||.+|++
T Consensus 157 iLtg~~I---~t~eda~~a~~~lhq~~-v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~~~FtGTGDLfsaL 232 (308)
T KOG2599|consen 157 ILTGMEI---RTEEDAKRAVEKLHQKG-VKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKIDGVFTGTGDLFSAL 232 (308)
T ss_pred hhcCCee---ccHHHHHHHHHHHHHhC-CCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccceEEecccHHHHHH
Confidence 9999763 24467888889998875 455666532 1 2332 122222221001111389999999999
Q ss_pred HHHHHhccC---ChHHHHH
Q 016016 309 VAVFLSWAR---AKGKATT 324 (396)
Q Consensus 309 IAa~LA~g~---~l~~A~~ 324 (396)
+.+.+.... ++..|+.
T Consensus 233 Lla~~~~~~~~~~l~~a~e 251 (308)
T KOG2599|consen 233 LLAWLHESPDNDDLSKAVE 251 (308)
T ss_pred HHHHHhcCCCcchHHHHHH
Confidence 999998773 5666655
No 53
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=98.69 E-value=2.6e-06 Score=82.09 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=89.5
Q ss_pred HHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHh
Q 016016 163 LAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242 (396)
Q Consensus 163 ~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~ 242 (396)
.+.+.+.+..++++++..-+ ..+ .+..+++.+++.+.++++||..........++++ ..++|+||..|+..++
T Consensus 119 ~~~~~~~l~~~~~v~~~~~~--~~~---~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~--~~dii~~n~~E~~~~~ 191 (288)
T cd01941 119 LRKIREALKEAKPIVVDANL--PEE---ALEYLLALAAKHGVPVAFEPTSAPKLKKLFYLLH--AIDLLTPNRAELEALA 191 (288)
T ss_pred HHHHHHHHhcCCEEEEeCCC--CHH---HHHHHHHhhhhcCCcEEEEccchHHhccchhhcc--cceEEeCCHHHHHHHh
Confidence 34455667889999874212 333 3445556666778999999863321110001221 3699999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcC---CeEEEEec--cCCCCCCCCchHHHHHHHHHHHhc
Q 016016 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDG---EIAKSVSI--YGSPRRCGGQGDILSGSVAVFLSW 315 (396)
Q Consensus 243 g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~---~~~~~i~~--~G~~~~t~GTGDvLAGiIAa~LA~ 315 (396)
+... .+..+....++.+. +.++..|++| |. +.++.++ ...+.+.. ......++|+||.|.|.+...+++
T Consensus 192 ~~~~---~~~~~~~~~~~~~~-~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~ 267 (288)
T cd01941 192 GALI---ENNEDENKAAKILL-LPGIKNVIVTLGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLE 267 (288)
T ss_pred Cccc---CCchhHHHHHHHHH-HcCCcEEEEEeCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHc
Confidence 8641 11122223344443 3444445555 44 3455554 34444432 112225999999887777777788
Q ss_pred cCChHHHHH
Q 016016 316 ARAKGKATT 324 (396)
Q Consensus 316 g~~l~~A~~ 324 (396)
|.++++|..
T Consensus 268 g~~~~~al~ 276 (288)
T cd01941 268 GMSLDDSLR 276 (288)
T ss_pred CCCHHHHHH
Confidence 998887776
No 54
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=98.65 E-value=4.7e-07 Score=94.83 Aligned_cols=179 Identities=13% Similarity=0.035 Sum_probs=102.8
Q ss_pred HHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCccc--ccccc---hhhhcC-C-CCeeecCCHHHH
Q 016016 166 VDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF--LVTNS---IDLVSG-Y-PLAVLTPNVNEY 238 (396)
Q Consensus 166 v~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~--ll~~~---~~ll~~-~-~~~VITPN~~E~ 238 (396)
+.+.++.+|++++.. ........+.+..+++.+++.++++++||.-.. +.... .+.++. + ..++++||..|+
T Consensus 218 ~~~~l~~adiv~lsg-~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea 296 (470)
T PLN02341 218 AKMAIRQSKALFCNG-YVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEA 296 (470)
T ss_pred HHhhhhcCCEEEEec-eeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHH
Confidence 344567899999863 211111123556677777788999999996431 11100 011211 2 268999999999
Q ss_pred HHHhcccccCCCCCCcHHHHHHHHHHhh-CCeEEEEc-C-CceEEEcCCeEEEEecc-CCCCCCCCchHHHHHHHHHHHh
Q 016016 239 KRLVQKVLNCEVNDRDAPELLQSLAKQI-GGVTILQK-G-KSDLISDGEIAKSVSIY-GSPRRCGGQGDILSGSVAVFLS 314 (396)
Q Consensus 239 a~L~g~~~~~~~~~~d~~~~a~~La~~~-g~vvVllK-G-~~dvI~d~~~~~~i~~~-G~~~~t~GTGDvLAGiIAa~LA 314 (396)
..|+|.. +..+.++.+.++. +...|++| | .+.++.+++..+.+... -....++|.||.+.+.+.+.+.
T Consensus 297 ~~l~g~~--------~~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gll 368 (470)
T PLN02341 297 EALTGIR--------NPILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGYI 368 (470)
T ss_pred HHHhCCC--------CHHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHHH
Confidence 9998742 3446677776431 12233444 3 35566666666655421 1223699999977777777777
Q ss_pred ccCChHHHHHHHhhhhhhHhhhhhHhhHH--HHHhHHHHHHHHHHHhh
Q 016016 315 WARAKGKATTRLYYNLSFKLGRQLFCFLS--LISCLATYSFLMRLLQS 360 (396)
Q Consensus 315 ~g~~l~~A~~~~y~~~~~~aai~~~~~~~--~a~~~a~~~~~~~~~~~ 360 (396)
.|.++++|+.. ..++++.+... ....+...+++.++++.
T Consensus 369 ~G~~l~eal~~-------A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~ 409 (470)
T PLN02341 369 HNLPLVNTLTL-------ANAVGAATAMGCGAGRNVATLEKVLELLRA 409 (470)
T ss_pred cCCCHHHHHHH-------HHHHHHHHHcCcCCCCCCCCHHHHHHHHHh
Confidence 88988877652 33333333322 22233445566666553
No 55
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=98.63 E-value=7.3e-07 Score=92.36 Aligned_cols=150 Identities=14% Similarity=0.096 Sum_probs=92.6
Q ss_pred HHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccc-cchhhhcCC--CCeeecCCHHHHHHHhcc
Q 016016 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVT-NSIDLVSGY--PLAVLTPNVNEYKRLVQK 244 (396)
Q Consensus 168 ~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~-~~~~ll~~~--~~~VITPN~~E~a~L~g~ 244 (396)
+.++.++.+++..-+...++..+.+.++++.+++.++++++||....... .+.++.+.+ ..++|.||..|+..|+|.
T Consensus 220 ~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~ 299 (426)
T PLN02813 220 SAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARALCGL 299 (426)
T ss_pred HHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCC
Confidence 44678899999421111122235667777778888999999987654322 111222221 369999999999999875
Q ss_pred cccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEecc-CCCCCCCCchHHHHHHHHHHHhccC-ChH
Q 016016 245 VLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIY-GSPRRCGGQGDILSGSVAVFLSWAR-AKG 320 (396)
Q Consensus 245 ~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~-G~~~~t~GTGDvLAGiIAa~LA~g~-~l~ 320 (396)
. ...+..++++.|.+... .|++| |. +.++.+++..+.+... -....|+|.||.++|.+...+..|. +++
T Consensus 300 ~-----~~~~~~~a~~~L~~~~~--~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~~G~~~l~ 372 (426)
T PLN02813 300 G-----SEESPESATRYLSHFCP--LVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGLLRGVSDLR 372 (426)
T ss_pred C-----CCCCHHHHHHHHHcCCC--EEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHHHcCCCCHH
Confidence 3 11244556666653233 33334 43 4566676666655321 1122699999977776666677888 898
Q ss_pred HHHH
Q 016016 321 KATT 324 (396)
Q Consensus 321 ~A~~ 324 (396)
+++.
T Consensus 373 ~al~ 376 (426)
T PLN02813 373 GMGE 376 (426)
T ss_pred HHHH
Confidence 8776
No 56
>PRK09850 pseudouridine kinase; Provisional
Probab=98.60 E-value=1.3e-06 Score=86.12 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHH
Q 016016 160 SKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYK 239 (396)
Q Consensus 160 ~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a 239 (396)
...++++.+.++.++.+++..++ ..+ .+..+++.+ .++++++||..........++++ ..++|+||..|+.
T Consensus 122 ~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~~~~~~~~--~g~~v~~D~~~~~~~~~~~~~l~--~~dil~~N~~Ea~ 192 (313)
T PRK09850 122 AEYLAQHREFIQRAKVIVADCNI--SEE---ALAWILDNA--ANVPVFVDPVSAWKCVKVRDRLN--QIHTLKPNRLEAE 192 (313)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCC--CHH---HHHHHHHhc--cCCCEEEEcCCHHHHHHHHhhhc--cceEEccCHHHHH
Confidence 33334445556789998886543 222 333344432 47899999975321110012222 3689999999999
Q ss_pred HHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEE-cCCc-eEEEcCC-eEEEEec-cCCCCCCCCchHHHHHHHHHHHhc
Q 016016 240 RLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQ-KGKS-DLISDGE-IAKSVSI-YGSPRRCGGQGDILSGSVAVFLSW 315 (396)
Q Consensus 240 ~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVll-KG~~-dvI~d~~-~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~ 315 (396)
.|+|... .+.++..++++.+.+ .+...|++ .|.. .++.+++ ...++.. .-....++|+||.|.|.+.+.+..
T Consensus 193 ~l~g~~~---~~~~~~~~~~~~l~~-~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~ 268 (313)
T PRK09850 193 TLSGIAL---SGREDVAKVAAWFHQ-HGLNRLVLSMGGDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVD 268 (313)
T ss_pred HHhCCCC---CCHHHHHHHHHHHHH-cCCCEEEEEeCCceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHc
Confidence 9998542 122345566666654 44433344 3543 4555532 2223321 112226999999877777777788
Q ss_pred cCChHHHHHH
Q 016016 316 ARAKGKATTR 325 (396)
Q Consensus 316 g~~l~~A~~~ 325 (396)
|.++++|++.
T Consensus 269 g~~~~eal~~ 278 (313)
T PRK09850 269 GMPFAESVRF 278 (313)
T ss_pred CCCHHHHHHH
Confidence 9998888763
No 57
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=98.53 E-value=3.5e-06 Score=85.61 Aligned_cols=148 Identities=17% Similarity=0.154 Sum_probs=90.6
Q ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCccccccc-chh---hhcCCCCeeecCCHHHHHHHhcc
Q 016016 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTN-SID---LVSGYPLAVLTPNVNEYKRLVQK 244 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~-~~~---ll~~~~~~VITPN~~E~a~L~g~ 244 (396)
.++.++++++.. ...+. +.+.++++.+++.++++++|+........ +.. ++.....++|.||..|+..|++.
T Consensus 174 ~~~~~~~v~v~~-~~~~~---~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~ 249 (367)
T PLN02379 174 DFKGSKWLVLRY-GFYNL---EVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRG 249 (367)
T ss_pred HHhcCCEEEEEc-ccCCH---HHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcC
Confidence 457899999983 32233 35566777778899999999976543222 112 22211369999999999999864
Q ss_pred cccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeccC--CCCCCCCchHHHHHHHHHHHhccCChHHH
Q 016016 245 VLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYG--SPRRCGGQGDILSGSVAVFLSWARAKGKA 322 (396)
Q Consensus 245 ~~~~~~~~~d~~~~a~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~G--~~~~t~GTGDvLAGiIAa~LA~g~~l~~A 322 (396)
.. ..+.....+.+.+....++|-....+.++.++++.+.+...- ....|+|.||.|+|.+...+.+|.+++++
T Consensus 250 ~~-----~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~l~~a 324 (367)
T PLN02379 250 EQ-----ESDPEAALEFLAKYCNWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLSLEEC 324 (367)
T ss_pred CC-----CCCHHHHHHHHHhcCCEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCCHHHH
Confidence 21 112333444443333333332223356677777666664221 12369999997666666566689999988
Q ss_pred HHH
Q 016016 323 TTR 325 (396)
Q Consensus 323 ~~~ 325 (396)
++.
T Consensus 325 ~~~ 327 (367)
T PLN02379 325 CKV 327 (367)
T ss_pred HHH
Confidence 773
No 58
>PTZ00292 ribokinase; Provisional
Probab=98.52 E-value=3.4e-06 Score=83.34 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=90.2
Q ss_pred cchhHHHHHHHHhcc-CCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccc---hhhhcCCCCeeecC
Q 016016 158 ISSKILAEVDKWMER-FDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNS---IDLVSGYPLAVLTP 233 (396)
Q Consensus 158 is~~~~~ev~~~~~~-~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~---~~ll~~~~~~VITP 233 (396)
++.+.+++..+.+.. ++.+++...+ ..+ .+.++++.+++.++++++|+......... .++++ ..++|+|
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~---~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~l~--~~dii~~ 204 (326)
T PTZ00292 132 LTPQMVDAQTDNIQNICKYLICQNEI--PLE---TTLDALKEAKERGCYTVFNPAPAPKLAEVEIIKPFLK--YVSLFCV 204 (326)
T ss_pred CCHHHHHHHHHHhhhhCCEEEECCCC--CHH---HHHHHHHHHHHcCCEEEEECCCCccccccccHHHHHh--cCCEEcC
Confidence 444444443344456 8888875433 222 33455566677899999999643211100 12222 3689999
Q ss_pred CHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCe-EEEEeccC-CCCCCCCchHHHHHHH
Q 016016 234 NVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEI-AKSVSIYG-SPRRCGGQGDILSGSV 309 (396)
Q Consensus 234 N~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~-~~~i~~~G-~~~~t~GTGDvLAGiI 309 (396)
|..|+..|+|... .+.++..+.++.+.+ .++..|++| |. +.++.+++. .+.+.... ....++|+||.+.+.+
T Consensus 205 n~~E~~~l~g~~~---~~~~~~~~~~~~l~~-~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~ 280 (326)
T PTZ00292 205 NEVEAALITGMEV---TDTESAFKASKELQQ-LGVENVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSM 280 (326)
T ss_pred CHHHHHHHhCCCC---CChhHHHHHHHHHHH-cCCCeEEEEeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHH
Confidence 9999999988541 122334455555543 444344555 43 345555443 34443211 2226999999766666
Q ss_pred HHHHhccCChHHHHHH
Q 016016 310 AVFLSWARAKGKATTR 325 (396)
Q Consensus 310 Aa~LA~g~~l~~A~~~ 325 (396)
.+.+..|.++++|+..
T Consensus 281 l~~l~~g~~~~~al~~ 296 (326)
T PTZ00292 281 AYFMSRGKDLKESCKR 296 (326)
T ss_pred HHHHHCCCCHHHHHHH
Confidence 6666678998887763
No 59
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=98.47 E-value=2.2e-06 Score=84.06 Aligned_cols=146 Identities=17% Similarity=0.177 Sum_probs=90.0
Q ss_pred HhccCCEEEEcCCCC-CCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcC-C-CCeeecCCHHHHHHHhccc
Q 016016 169 WMERFDCLVVGPGLG-RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-Y-PLAVLTPNVNEYKRLVQKV 245 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~-~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~-~-~~~VITPN~~E~a~L~g~~ 245 (396)
.++.+|.+.+..-.. ... +.+..+++.+++.++++++||..........+.+.. + ..++++||..|+..|++.+
T Consensus 142 ~l~~~~~v~~~~~~~~~~~---~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~ 218 (312)
T cd01168 142 LLAKAKYLYLEGYLLTVPP---EAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAEAE 218 (312)
T ss_pred HHccCCEEEEEEEecCCCH---HHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCC
Confidence 357889999864211 122 356666677777899999999742111000111211 2 3689999999999998742
Q ss_pred ccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEecc--CCCCCCCCchHHHHHHHHHHHhccCChHH
Q 016016 246 LNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIY--GSPRRCGGQGDILSGSVAVFLSWARAKGK 321 (396)
Q Consensus 246 ~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~--G~~~~t~GTGDvLAGiIAa~LA~g~~l~~ 321 (396)
..+..+.++.+.++ ++..|++| |. +.++.+++..+.+... .....++|.||.|.+.+.+.+.+|.++++
T Consensus 219 ------~~~~~~~a~~l~~~-g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~~~~ 291 (312)
T cd01168 219 ------TTDDLEAALKLLAL-RCRIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEPLEE 291 (312)
T ss_pred ------CCChHHHHHHHHhc-CCCEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCCHHH
Confidence 12345677777764 33334445 43 4455566665555321 12236999999776666666678999988
Q ss_pred HHH
Q 016016 322 ATT 324 (396)
Q Consensus 322 A~~ 324 (396)
|+.
T Consensus 292 a~~ 294 (312)
T cd01168 292 CIR 294 (312)
T ss_pred HHH
Confidence 876
No 60
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=98.44 E-value=4e-06 Score=81.06 Aligned_cols=147 Identities=16% Similarity=0.096 Sum_probs=88.1
Q ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCccc-ccccc---hhhhcC-C-CCeeecCCHHHHHHHh
Q 016016 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-LVTNS---IDLVSG-Y-PLAVLTPNVNEYKRLV 242 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~-ll~~~---~~ll~~-~-~~~VITPN~~E~a~L~ 242 (396)
.++.+++++++.-...+....+.+.++++.+++.++|+++||.... +.... .+.++. + ..+++.||..|+..|+
T Consensus 117 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~ 196 (295)
T cd01167 117 LLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLF 196 (295)
T ss_pred HhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHh
Confidence 4577899998742111222234566777777778999999997331 11111 111211 2 3689999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEec-cCCCCCCCCchHHHHHHHHHHHhccC--
Q 016016 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLSWAR-- 317 (396)
Q Consensus 243 g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~-- 317 (396)
+.. +..+.++.+. +.++..|++| |+ +.++++++..+.+.. .-....++|.||.|.|.+.+.+..|.
T Consensus 197 ~~~--------~~~~~~~~l~-~~g~~~vvvt~G~~G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~~~~l~~g~~~ 267 (295)
T cd01167 197 GEE--------DPEEIAALLL-LFGLKLVLVTRGADGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQLLSRGLL 267 (295)
T ss_pred CCC--------CHHHHHHHHh-hcCCCEEEEecCCcceEEEECCcceeeCCCCcceeeCCCccHHHHHHHHHHHHhCCcc
Confidence 743 1123344444 3454444555 33 355666665555532 11222699999987777777777777
Q ss_pred -----ChHHHHH
Q 016016 318 -----AKGKATT 324 (396)
Q Consensus 318 -----~l~~A~~ 324 (396)
++++|+.
T Consensus 268 ~~~~~~~~~a~~ 279 (295)
T cd01167 268 ALDEDELAEALR 279 (295)
T ss_pred cccHHHHHHHHH
Confidence 7777766
No 61
>PTZ00247 adenosine kinase; Provisional
Probab=98.42 E-value=3.8e-06 Score=83.97 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=90.8
Q ss_pred HHhccCCEEEEcCC-CCCCHHHHHHHHHHHHHhhcCCCCEEEecCccccccc-c---hhhhcCCCCeeecCCHHHHHHHh
Q 016016 168 KWMERFDCLVVGPG-LGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTN-S---IDLVSGYPLAVLTPNVNEYKRLV 242 (396)
Q Consensus 168 ~~~~~~dalvIG~G-l~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~-~---~~ll~~~~~~VITPN~~E~a~L~ 242 (396)
+.++.++.+++..- +..+. +.+..+++.+++.++++++|+........ . .++++ ..++++||..|+..|+
T Consensus 155 ~~l~~~~~v~~~g~~~~~~~---~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~Dil~~N~~Ea~~l~ 229 (345)
T PTZ00247 155 EAIKTAQLYYLEGFFLTVSP---NNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLP--YVDILFGNEEEAKTFA 229 (345)
T ss_pred HHHhhCCEEEEEEEEecccH---HHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHh--hCCEEEeCHHHHHHHh
Confidence 35678899998621 11123 34556667777889999999754221110 0 12222 3699999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHh-----hCCeEEEEc-CC-ceEEEcCCeEEEEec-cCC---CCCCCCchHHHHHHHHH
Q 016016 243 QKVLNCEVNDRDAPELLQSLAKQ-----IGGVTILQK-GK-SDLISDGEIAKSVSI-YGS---PRRCGGQGDILSGSVAV 311 (396)
Q Consensus 243 g~~~~~~~~~~d~~~~a~~La~~-----~g~vvVllK-G~-~dvI~d~~~~~~i~~-~G~---~~~t~GTGDvLAGiIAa 311 (396)
|... .++++..+.++.+.+. .+...|++| |. +.++.++++.+.+.. .-. ...++|.||.|.|.+.+
T Consensus 230 g~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~ 306 (345)
T PTZ00247 230 KAMK---WDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLA 306 (345)
T ss_pred hccC---CCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHH
Confidence 8420 1223455666666542 122234444 44 456666666544432 221 23699999976666666
Q ss_pred HHhccCChHHHHHH
Q 016016 312 FLSWARAKGKATTR 325 (396)
Q Consensus 312 ~LA~g~~l~~A~~~ 325 (396)
.+.+|.++++|+..
T Consensus 307 ~l~~g~~~~~al~~ 320 (345)
T PTZ00247 307 QYANGKDIDRCVEA 320 (345)
T ss_pred HHHcCCCHHHHHHH
Confidence 66799999988763
No 62
>PRK09954 putative kinase; Provisional
Probab=98.39 E-value=7.4e-06 Score=82.51 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=88.5
Q ss_pred cchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHH
Q 016016 158 ISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNE 237 (396)
Q Consensus 158 is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E 237 (396)
++++.+++..+.+...+.+++...+. .+ .+..+++.+ .++|+++||..........++++ ..++++||..|
T Consensus 173 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~---~~~~~~~~a--~~~~v~~D~~~~~~~~~~~~~l~--~~dil~~n~~E 243 (362)
T PRK09954 173 LTPQLLNGSRDLIRHAGVVLADCNLT--AE---ALEWVFTLA--DEIPVFVDTVSEFKAGKIKHWLA--HIHTLKPTQPE 243 (362)
T ss_pred CCHHHHHHHHHHHhcCCEEEEECCCC--HH---HHHHHHHhC--CCCcEEEECCCHHHhhhhhhhhc--cccEEecCHHH
Confidence 44444455556667889888865432 33 233334433 47899999975321110012222 36899999999
Q ss_pred HHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CCc-eEEEcCC-eEEEEec-cCCCCCCCCchHHHHHHHHHHH
Q 016016 238 YKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GKS-DLISDGE-IAKSVSI-YGSPRRCGGQGDILSGSVAVFL 313 (396)
Q Consensus 238 ~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~~-dvI~d~~-~~~~i~~-~G~~~~t~GTGDvLAGiIAa~L 313 (396)
+..|+|... .+..+..++++.+.+ +++..|++| |.. .++.+++ ..+.+.. .-....++|.||.|.+.+.+.+
T Consensus 244 a~~l~g~~~---~~~~~~~~~~~~l~~-~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l 319 (362)
T PRK09954 244 LEILWGQAI---TSDADRNAAVNALHQ-QGVQQIFVYLPDESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSF 319 (362)
T ss_pred HHHHcCCCC---CCHHHHHHHHHHHHH-cCCCEEEEEeCCccEEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHH
Confidence 999988541 112234456666654 454344444 443 3444433 2333321 1122269999996666666666
Q ss_pred hccCChHHHHHH
Q 016016 314 SWARAKGKATTR 325 (396)
Q Consensus 314 A~g~~l~~A~~~ 325 (396)
..|.++++|...
T Consensus 320 ~~g~~~~eal~~ 331 (362)
T PRK09954 320 LEGYSFRDSARF 331 (362)
T ss_pred HcCCCHHHHHHH
Confidence 688988887763
No 63
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=98.37 E-value=7.4e-06 Score=79.98 Aligned_cols=146 Identities=13% Similarity=0.023 Sum_probs=87.2
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccc-cccc---hhhhcC-C-CCeeecCCHHHHHHHhcc
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFL-VTNS---IDLVSG-Y-PLAVLTPNVNEYKRLVQK 244 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~l-l~~~---~~ll~~-~-~~~VITPN~~E~a~L~g~ 244 (396)
..++.+.++.-....+...+.+.++++.+++.++++++||..... .... .+.++. + ..+++.||..|+..|+|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~ 197 (304)
T PRK09434 118 RQGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGT 197 (304)
T ss_pred cCCCEEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCC
Confidence 568888887422222222334456667777889999999974321 1110 112222 2 368999999999999874
Q ss_pred cccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEecc-CCCCCCCCchHHHHHHHHHHHhccC----
Q 016016 245 VLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIY-GSPRRCGGQGDILSGSVAVFLSWAR---- 317 (396)
Q Consensus 245 ~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~-G~~~~t~GTGDvLAGiIAa~LA~g~---- 317 (396)
. +..+.++.+.++++...|++| |+ +.++.++++.+.+... -....++|.||.+.|.+.+.+..|.
T Consensus 198 ~--------~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~~g~~~~~ 269 (304)
T PRK09434 198 S--------QLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAGLSQAGLWTD 269 (304)
T ss_pred C--------CHHHHHHHHHhhcCCcEEEEEecCCceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHHHHHHHcCCCccc
Confidence 2 345667777665554334443 54 4556666665555321 1122699999977766666667775
Q ss_pred --ChHHHHH
Q 016016 318 --AKGKATT 324 (396)
Q Consensus 318 --~l~~A~~ 324 (396)
++++|+.
T Consensus 270 ~~~~~~a~~ 278 (304)
T PRK09434 270 EAELAEIIA 278 (304)
T ss_pred hHHHHHHHH
Confidence 5555544
No 64
>PLN02323 probable fructokinase
Probab=98.36 E-value=8.8e-06 Score=80.64 Aligned_cols=141 Identities=12% Similarity=0.055 Sum_probs=75.1
Q ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCccc-ccccc---hhhhcC-C-CCeeecCCHHHHHHHh
Q 016016 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-LVTNS---IDLVSG-Y-PLAVLTPNVNEYKRLV 242 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~-ll~~~---~~ll~~-~-~~~VITPN~~E~a~L~ 242 (396)
+++.++.+.++.-..........+..+++.+++.++++++||.-.. ..... .+.+.. + .+++++||..|+..|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~ 212 (330)
T PLN02323 133 LIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLT 212 (330)
T ss_pred HHccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHh
Confidence 4567787766532211222223455666777788999999995211 11100 111211 1 3689999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEecc-CCCCCCCCchHH-HHHHHHHHHhccCC
Q 016016 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIY-GSPRRCGGQGDI-LSGSVAVFLSWARA 318 (396)
Q Consensus 243 g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~-G~~~~t~GTGDv-LAGiIAa~LA~g~~ 318 (396)
|.. ..+ ..+.. ++.. .++..|++| |+ +.++.+++..+.+... -....++|.||. .||++++++ .|.+
T Consensus 213 g~~----~~~--~~~~~-~~~~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~-~g~~ 283 (330)
T PLN02323 213 GGD----DPD--DDTVV-KLWH-PNLKLLLVTEGEEGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLA-KDLS 283 (330)
T ss_pred CCC----Ccc--HHHHH-HHHh-cCCCEEEEecCCCceEEEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHHH-cCCc
Confidence 753 111 11222 3332 243333444 43 4556665554444311 122369999995 555666655 5543
No 65
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=98.31 E-value=1.7e-05 Score=76.30 Aligned_cols=136 Identities=22% Similarity=0.209 Sum_probs=84.1
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcccccCC
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCE 249 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~~~~ 249 (396)
++.+|++++++.. . +...++++.+++.++|+++|.+...... ..++++ ..++++||..|+..|++..
T Consensus 124 ~~~~~~v~i~~~~---~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~~~--~~dil~~n~~e~~~l~~~~---- 190 (284)
T cd01945 124 LGGADAVLVDGRQ---P---EAALHLAQEARARGIPIPLDLDGGGLRV-LEELLP--LADHAICSENFLRPNTGSA---- 190 (284)
T ss_pred hCcCCEEEEcCCC---H---HHHHHHHHHHHHcCCCeeEeccCCcccc-hHHHhc--cCCEEEeChhHHhhhcCCC----
Confidence 5889999997632 1 2344456666778888888876433211 112222 3589999999999987642
Q ss_pred CCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEc-CCeEEEEeccC-CCCCCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 250 VNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISD-GEIAKSVSIYG-SPRRCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 250 ~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d-~~~~~~i~~~G-~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
+. +.++.+. +.++..|++| |. +.++++ ++..+.+...- ....++|.||.+.+.+...+.+|.++++|+.
T Consensus 191 ----~~-~~~~~l~-~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~ 263 (284)
T cd01945 191 ----DD-EALELLA-SLGIPFVAVTLGEAGCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMPLREALR 263 (284)
T ss_pred ----HH-HHHHHHH-hcCCcEEEEEECCCCeEEEcCCCCEEecCCCccccccCCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 11 3444443 4455455555 33 355655 44455553211 1225999999777777767779998887776
No 66
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=98.25 E-value=1.2e-05 Score=77.44 Aligned_cols=133 Identities=14% Similarity=0.227 Sum_probs=78.0
Q ss_pred HHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcC-C-CCeeecCCHHHHHHHhccc
Q 016016 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-Y-PLAVLTPNVNEYKRLVQKV 245 (396)
Q Consensus 168 ~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~-~-~~~VITPN~~E~a~L~g~~ 245 (396)
+.+..++++++++ +. .+ ...++++.+++. +++++||..... ....+.+++ + ..++++||..|+..|+|..
T Consensus 110 ~~~~~~~~v~~~~-~~--~~---~~~~~~~~~~~~-~~v~~D~~~~~~-~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~ 181 (277)
T cd01946 110 EHYKDSEFVFLGN-IA--PE---LQREVLEQVKDP-KLVVMDTMNFWI-SIKPEKLKKVLAKVDVVIINDGEARQLTGAA 181 (277)
T ss_pred HHhhcCCEEEECC-CC--HH---HHHHHHHHHHhC-CEEEEccHHHhh-hhhHHHHHHHhccCCEEeCCHHHHHHHhCCc
Confidence 4467899999963 43 33 234445555555 789999843211 001112221 2 3699999999999998632
Q ss_pred ccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC--ceEEEcCCeEEEEeccCC--CCCCCCchHHHHHHHHHHHhccC
Q 016016 246 LNCEVNDRDAPELLQSLAKQIGGVTILQKGK--SDLISDGEIAKSVSIYGS--PRRCGGQGDILSGSVAVFLSWAR 317 (396)
Q Consensus 246 ~~~~~~~~d~~~~a~~La~~~g~vvVllKG~--~dvI~d~~~~~~i~~~G~--~~~t~GTGDvLAGiIAa~LA~g~ 317 (396)
+..+.++.+.+ .+...|++|.+ +.++.++++.+.+...-. ...++|+||.+++.+.+.+..+.
T Consensus 182 --------~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~ 248 (277)
T cd01946 182 --------NLVKAARLILA-MGPKALIIKRGEYGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQK 248 (277)
T ss_pred --------hHHHHHHHHHH-cCCCEEEEecCCCcEEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHHhCC
Confidence 34456666654 45555666643 345656665554432111 12689999976666666666653
No 67
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=98.21 E-value=5.8e-05 Score=72.38 Aligned_cols=132 Identities=13% Similarity=0.049 Sum_probs=77.6
Q ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccch---hhhcCCCCeeecCCHHHHHH---Hh
Q 016016 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI---DLVSGYPLAVLTPNVNEYKR---LV 242 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~---~ll~~~~~~VITPN~~E~a~---L~ 242 (396)
.++.++.+.+.. .. .+.++++.+++.++|+++||.......... ++++ ..++++||..|+.. |.
T Consensus 123 ~~~~~~~~~~~~-~~-------~~~~~~~~~~~~g~~v~~D~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l~~~~ 192 (279)
T cd01942 123 PDGLADIVHLSS-GP-------GLIELARELAAGGITVSFDPGQELPRLSGEELEEILE--RADILFVNDYEAELLKERT 192 (279)
T ss_pred hhcccCEEEeCC-ch-------HHHHHHHHHHHcCCeEEEcchhhhhhccHHHHHHHHh--hCCEEecCHHHHHHHHhhc
Confidence 457788888863 21 233444555667999999998643211111 2222 36899999999954 43
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEec--cCCCCCCCCchHHHHHHHHHHHhccCC
Q 016016 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSI--YGSPRRCGGQGDILSGSVAVFLSWARA 318 (396)
Q Consensus 243 g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~--~G~~~~t~GTGDvLAGiIAa~LA~g~~ 318 (396)
+.. +. . .+ .+...|++| |. +.++.+++..+.+.. .-+...++|.||.+.+.+.+.+.+|.+
T Consensus 193 ~~~--------~~-~----~~--~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~ 257 (279)
T cd01942 193 GLS--------EA-E----LA--SGVRVVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYD 257 (279)
T ss_pred CCC--------hH-H----Hh--cCCCEEEEEECCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCC
Confidence 321 10 1 11 333334444 43 345556565555532 112226999999877777777778999
Q ss_pred hHHHHHH
Q 016016 319 KGKATTR 325 (396)
Q Consensus 319 l~~A~~~ 325 (396)
+++|+..
T Consensus 258 l~~al~~ 264 (279)
T cd01942 258 LEESLRL 264 (279)
T ss_pred HHHHHHH
Confidence 8888763
No 68
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=98.18 E-value=5.8e-05 Score=73.03 Aligned_cols=146 Identities=10% Similarity=0.046 Sum_probs=81.5
Q ss_pred hccCCEEEEcCCCCC-CHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcC-C-CCeeecCCHHHHHHHhcccc
Q 016016 170 MERFDCLVVGPGLGR-DPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-Y-PLAVLTPNVNEYKRLVQKVL 246 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~-~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~-~-~~~VITPN~~E~a~L~g~~~ 246 (396)
+..+|++.++..... .....+.+.++++.+ +.++++++||......- ..+.++. + ..++++||..|+..|+|..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~D~~~~~~~~-~~~~~~~~l~~~d~~~~n~~E~~~l~g~~- 199 (289)
T cd01944 123 VAPYDYVYLSGYTLASENASKVILLEWLEAL-PAGTTLVFDPGPRISDI-PDTILQALMAKRPIWSCNREEAAIFAERG- 199 (289)
T ss_pred CCCCCEEEEeCccccCcchhHHHHHHHHHhc-cCCCEEEEcCccccccc-CHHHHHHHHhcCCEEccCHHHHHHHhCCC-
Confidence 467899988643221 211234555565554 35689999996332111 0112221 2 3689999999999998853
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEc-CCeEEEEe-ccCCCCCCCCchHHHHHHHHHHHhccCChHHH
Q 016016 247 NCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISD-GEIAKSVS-IYGSPRRCGGQGDILSGSVAVFLSWARAKGKA 322 (396)
Q Consensus 247 ~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d-~~~~~~i~-~~G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A 322 (396)
. .+....++++.++ +...|++| |. +.++.+ ++..+.+. ..-....++|.||.+.+.+...+..|.++++|
T Consensus 200 ---~--~~~~~~~~~~~~~-~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~g~~~~~a 273 (289)
T cd01944 200 ---D--PAAEASALRIYAK-TAAPVVVRLGSNGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMSLADA 273 (289)
T ss_pred ---C--cchHHHHHHHHhc-cCCeEEEEECCCcEEEEecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHHcCCCHHHH
Confidence 1 1122335555543 32233444 43 345555 33344442 12222369999996655555556788888877
Q ss_pred HH
Q 016016 323 TT 324 (396)
Q Consensus 323 ~~ 324 (396)
..
T Consensus 274 ~~ 275 (289)
T cd01944 274 VL 275 (289)
T ss_pred HH
Confidence 66
No 69
>PLN02548 adenosine kinase
Probab=98.08 E-value=7.1e-05 Score=74.24 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=83.8
Q ss_pred HhccCCEEEEcC-CCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcC-C-CCeeecCCHHHHHHHhccc
Q 016016 169 WMERFDCLVVGP-GLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-Y-PLAVLTPNVNEYKRLVQKV 245 (396)
Q Consensus 169 ~~~~~dalvIG~-Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~-~-~~~VITPN~~E~a~L~g~~ 245 (396)
.+...|.+.+.. -+..+++ .+..+++.+++.+.++++|+..........+.++. + ..++++||..|+..|++..
T Consensus 145 ~~~~~~~v~~~g~~~~~~~~---~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~ 221 (332)
T PLN02548 145 LVEKAKFYYIAGFFLTVSPE---SIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALPYVDFLFGNETEARTFAKVQ 221 (332)
T ss_pred HHhhCCEEEEEEEEccCCHH---HHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHhhCCEEEecHHHHHHHhCcc
Confidence 456789888861 0111333 34555566667788888887532111111111221 2 2589999999999998853
Q ss_pred ccCCCCCCcHHHHHHHHHHh---h--CCeEEEEc-CC-ceEEEcCCeEEEEecc-C---CCCCCCCchHHHHHHHHHHHh
Q 016016 246 LNCEVNDRDAPELLQSLAKQ---I--GGVTILQK-GK-SDLISDGEIAKSVSIY-G---SPRRCGGQGDILSGSVAVFLS 314 (396)
Q Consensus 246 ~~~~~~~~d~~~~a~~La~~---~--g~vvVllK-G~-~dvI~d~~~~~~i~~~-G---~~~~t~GTGDvLAGiIAa~LA 314 (396)
. .+.++..+.++++.+. . ++..|++| |. +.++.+++..+.+... . ....++|.||.+.|.+...+.
T Consensus 222 ~---~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~ 298 (332)
T PLN02548 222 G---WETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLV 298 (332)
T ss_pred C---CCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHHHHHHHH
Confidence 1 1223344455555432 1 22233333 44 4555566655554211 1 123699999966665555667
Q ss_pred ccCChHHHHHH
Q 016016 315 WARAKGKATTR 325 (396)
Q Consensus 315 ~g~~l~~A~~~ 325 (396)
.|.++++|...
T Consensus 299 ~g~~l~eal~~ 309 (332)
T PLN02548 299 QGKDIEECVRA 309 (332)
T ss_pred cCCCHHHHHHH
Confidence 88888887763
No 70
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=98.07 E-value=3e-05 Score=74.82 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=87.1
Q ss_pred HHHhccCCEEEEcC-CCCCCHHHHHHHHHHHHHhhcCC--CCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhc
Q 016016 167 DKWMERFDCLVVGP-GLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQ 243 (396)
Q Consensus 167 ~~~~~~~dalvIG~-Gl~~~~~~~~~v~~~l~~a~~~~--~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g 243 (396)
.+.+...++++++. -+... ...+.+..+.+.+++.+ .+++.|+..........++++ .+++++||..|+..|++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l~~ 198 (301)
T PF00294_consen 122 EEAIDEADILHLSGVSLPEG-IPEDLLEALAKAAKKNGPFDPVFRDPSWDDLREDLKELLP--YADILKPNEEEAEALTG 198 (301)
T ss_dssp HHHHHTESEEEEESGHCSTT-SHHHHHHHHHHHHHHTTEEEEEEEGGGSHHHHHHHHHHHH--TSSEEEEEHHHHHHHHT
T ss_pred ccccccccceeecccccccc-cccceeeecccccccccccccccccccccccchhhhhhcc--ccchhcccccccccccc
Confidence 44557889999986 12211 11234444444444455 356666654331111012332 47999999999999998
Q ss_pred ccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEecc--CCCCCCCCchHHHHHHHHHHHhccCCh
Q 016016 244 KVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSIY--GSPRRCGGQGDILSGSVAVFLSWARAK 319 (396)
Q Consensus 244 ~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~~--G~~~~t~GTGDvLAGiIAa~LA~g~~l 319 (396)
... .+.++..+.++++... +...|++| |. +.++.+++..+.+.+. .+...++|.||.+.+.+...+..+.++
T Consensus 199 ~~~---~~~~~~~~~~~~l~~~-g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~~ 274 (301)
T PF00294_consen 199 SKI---DDPEDALAALRELQAR-GVKIVIVTLGEDGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMSL 274 (301)
T ss_dssp CST---SSHHHHHHHHHHHHHT-TSSEEEEEEGGGEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHHH
T ss_pred ccc---cchhhhhccccccchh-hhhhhhccccccCcccccccccccccccccccccceeccchhhhHHHHHHHHcCCCH
Confidence 641 1224555666666543 33334444 54 4566666666666532 223369999996666666666668878
Q ss_pred HHHHHH
Q 016016 320 GKATTR 325 (396)
Q Consensus 320 ~~A~~~ 325 (396)
++|+..
T Consensus 275 ~~a~~~ 280 (301)
T PF00294_consen 275 EEALKF 280 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777663
No 71
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=97.98 E-value=0.00011 Score=69.68 Aligned_cols=134 Identities=14% Similarity=0.133 Sum_probs=79.7
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccc-cccchhhhcC-C-CCeeecCCHHHHHHHhcccc
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFL-VTNSIDLVSG-Y-PLAVLTPNVNEYKRLVQKVL 246 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~l-l~~~~~ll~~-~-~~~VITPN~~E~a~L~g~~~ 246 (396)
+..+|.+.++. +. .+ ....+.+. .+|+++||..... .......+++ + ..++++||..|+..+
T Consensus 105 ~~~~~~~~~~~-~~--~~---~~~~~~~~----~~~v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~----- 169 (254)
T cd01937 105 TITAEIVILGP-VP--EE---ISPSLFRK----FAFISLDAQGFLRRANQEKLIKCVILKLHDVLKLSRVEAEVI----- 169 (254)
T ss_pred cCcccEEEECC-Cc--ch---hcHHHHhh----hhheeEccccceeeccccchHHHhhcccCcEEEEcHHHHhhc-----
Confidence 46789999974 42 22 22222222 2689999975411 1111111122 2 369999999998873
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEcCC--ceEEEcCCeEEEEec-cCCCCCCCCchHHHHHHHHHHHhccCChHHHH
Q 016016 247 NCEVNDRDAPELLQSLAKQIGGVTILQKGK--SDLISDGEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLSWARAKGKAT 323 (396)
Q Consensus 247 ~~~~~~~d~~~~a~~La~~~g~vvVllKG~--~dvI~d~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~ 323 (396)
.+..+.++.+.+ +++..|++|.. +.++.++++.+.+.. .-.+..++|+||.+++.+...+..|.++++|+
T Consensus 170 ------~~~~~~~~~l~~-~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~ 242 (254)
T cd01937 170 ------STPTELARLIKE-TGVKEIIVTDGEEGGYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAFLYSRLSGKDIKEAA 242 (254)
T ss_pred ------CCHHHHHHHHHH-cCCCEEEEeeCCcceEEEECCccEEccccCceeccCCCchHHHHHHHHHHHHcCCCHHHHH
Confidence 123455666643 55444555543 355666665554431 11223699999988888888888899888887
Q ss_pred HH
Q 016016 324 TR 325 (396)
Q Consensus 324 ~~ 325 (396)
..
T Consensus 243 ~~ 244 (254)
T cd01937 243 EF 244 (254)
T ss_pred HH
Confidence 63
No 72
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.00019 Score=70.27 Aligned_cols=146 Identities=18% Similarity=0.109 Sum_probs=88.0
Q ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcC-C-CCeeecCCHHHHHHHhcccc
Q 016016 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-Y-PLAVLTPNVNEYKRLVQKVL 246 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~-~-~~~VITPN~~E~a~L~g~~~ 246 (396)
.+...+.+.++.-.+.... +.+..+++.+++.++++.+|++....... .+.+.. . ..+++.||..|+..|.|..
T Consensus 126 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~a~~~g~~v~~d~~~~~~~~~-~~~~~~~l~~~d~~~~n~~E~~~l~g~~- 201 (311)
T COG0524 126 ELAGADVLHISGIQLEIPP--EALLAALELAKAAGVTVSFDLNPRPALWD-RELLEELLALADILFPNEEEAELLTGLE- 201 (311)
T ss_pred HHhhcCeeeEEEeecCCCh--HHHHHHHHHHHHcCCeEEEecCCCccccc-hhhHHHHHhhCCEEeCCHHHHHHHhCCC-
Confidence 3456777777643332111 35566677778889999999986544321 112222 2 3689999999999998741
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEe-ccCCC---CCCCCchHHHHHHHHHHHhccCChH
Q 016016 247 NCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVS-IYGSP---RRCGGQGDILSGSVAVFLSWARAKG 320 (396)
Q Consensus 247 ~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~-~~G~~---~~t~GTGDvLAGiIAa~LA~g~~l~ 320 (396)
.+.....+.+ ...+...|++| |+ +.++.+++....+. ....+ ..++|.||.+.|.....+..|.+++
T Consensus 202 ------~~~~~~~~~~-~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~ 274 (311)
T COG0524 202 ------EDAEAAAALL-LAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLE 274 (311)
T ss_pred ------ccHHHHHHHH-hhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHH
Confidence 1222223333 33454455556 55 56666654311111 11222 2699999988777777788888888
Q ss_pred HHHHH
Q 016016 321 KATTR 325 (396)
Q Consensus 321 ~A~~~ 325 (396)
+|+..
T Consensus 275 ~a~~~ 279 (311)
T COG0524 275 EALRF 279 (311)
T ss_pred HHHHH
Confidence 88774
No 73
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=97.92 E-value=0.00025 Score=67.61 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=78.8
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcC-CC-CeeecCCHHHHHHHhccccc
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YP-LAVLTPNVNEYKRLVQKVLN 247 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~-~~-~~VITPN~~E~a~L~g~~~~ 247 (396)
++.+|.+.++. ... . +.+.++++.+++.++|+++||...... +.++. .+ .+++.+|..|..
T Consensus 110 ~~~~~~v~~~~-~~~-~---~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~~~~~d~~~~~~~~~~-------- 172 (264)
T cd01940 110 LSQFDLVHTGI-YSH-E---GHLEKALQALVGAGALISFDFSDRWDD----DYLQLVCPYVDFAFFSASDLS-------- 172 (264)
T ss_pred HhcCCEEEEcc-ccc-H---HHHHHHHHHHHHcCCEEEEcCcccCCH----HHHHhhcccCCEEEechhhcC--------
Confidence 47889999973 432 1 245666777778899999999764311 11221 23 478888866531
Q ss_pred CCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEec-cCCCCCCCCchHHHHHHHHHHHhccCC-hHHHH
Q 016016 248 CEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLSWARA-KGKAT 323 (396)
Q Consensus 248 ~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~~-l~~A~ 323 (396)
.++..+.++++.+ .++..|++| |. +.++.+++..+.+.. .-....++|.||.+.|.+...+.+|.+ +++|+
T Consensus 173 ----~~~~~~~~~~l~~-~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~~al 247 (264)
T cd01940 173 ----DEEVKAKLKEAVS-RGAKLVIVTRGEDGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLLAGGTAIAEAM 247 (264)
T ss_pred ----cchHHHHHHHHHH-cCCCEEEEEECCCCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHHHHHHHHhCCchHHHHH
Confidence 1234455666654 343233333 43 455656665555532 112226999999655555555557887 88777
Q ss_pred HH
Q 016016 324 TR 325 (396)
Q Consensus 324 ~~ 325 (396)
..
T Consensus 248 ~~ 249 (264)
T cd01940 248 RQ 249 (264)
T ss_pred HH
Confidence 63
No 74
>PRK15074 inosine/guanosine kinase; Provisional
Probab=97.83 E-value=0.00032 Score=72.99 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=60.1
Q ss_pred HhccCCEEEEcCCCCC---CHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhh-cC-C-CCeeecCCHHHHHHHh
Q 016016 169 WMERFDCLVVGPGLGR---DPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLV-SG-Y-PLAVLTPNVNEYKRLV 242 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~---~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll-~~-~-~~~VITPN~~E~a~L~ 242 (396)
.++.++++.+..-+.. +....+.+..+++.+++.++++++||.....+....+.+ .. . ..++|.||..|+..|+
T Consensus 183 ~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~~Lt 262 (434)
T PRK15074 183 VIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAEALT 262 (434)
T ss_pred HhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHHHHh
Confidence 4578899988532211 101123455677778889999999998654332211111 11 1 3699999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEE
Q 016016 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLIS 281 (396)
Q Consensus 243 g~~~~~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~ 281 (396)
|.. +..++++.+.+... .|++| |. +.+++
T Consensus 263 G~~--------d~eea~~~L~~~~~--~VVVTlG~~Ga~v~ 293 (434)
T PRK15074 263 GES--------DPLLASDKALDWVD--LVLCTAGPIGLYMA 293 (434)
T ss_pred CCC--------CHHHHHHHHHcCCC--EEEEEECCCCEEEE
Confidence 732 33355666654323 33344 44 45554
No 75
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=97.61 E-value=0.0011 Score=63.27 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=71.8
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcccccCC
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCE 249 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~~~~ 249 (396)
++.+|.+.+++.. ... ++++.+++.+ ++++|+..........++++ ..+++.||..|+..|.+
T Consensus 119 ~~~~~~~~~~~~~-~~~-------~~~~~a~~~~-~~~~d~~~~~~~~~~~~~~~--~~d~~~~n~~e~~~l~~------ 181 (265)
T cd01947 119 LDEGDGVFITAAA-VDK-------EAIRKCRETK-LVILQVTPRVRVDELNQALI--PLDILIGSRLDPGELVV------ 181 (265)
T ss_pred hccCCEEEEeccc-ccH-------HHHHHHHHhC-CeEeccCccccchhHHHHhh--hCCEEEeCHHHHHHhhh------
Confidence 4678999998643 121 2233344443 67889864322211012222 36899999999988853
Q ss_pred CCCCcHHHHHHHHHHhhCCeEEEEc-C-CceEEEcCCeEEEEecc-CCCCCCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 250 VNDRDAPELLQSLAKQIGGVTILQK-G-KSDLISDGEIAKSVSIY-GSPRRCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 250 ~~~~d~~~~a~~La~~~g~vvVllK-G-~~dvI~d~~~~~~i~~~-G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
++.+.+ .+...|++| | .+.++.+++..+.+... .....++|.||.+.+.+...+..|.++++|..
T Consensus 182 ---------~~~~~~-~~~~~viit~G~~Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~ 249 (265)
T cd01947 182 ---------AEKIAG-PFPRYLIVTEGELGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWSIEEALE 249 (265)
T ss_pred ---------HHHHHh-ccCCEEEEEeCCCCeEEEECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHH
Confidence 223332 233233333 4 34566666655544322 11226999999555555445667888887766
No 76
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=97.54 E-value=0.0015 Score=65.29 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=78.6
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhc------CCCCEEEecCcccccccchhhhcC-CC-CeeecCCHHHHHHH
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQ------SNVPIVIDGDGLFLVTNSIDLVSG-YP-LAVLTPNVNEYKRL 241 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~------~~~PvVLDpdgl~ll~~~~~ll~~-~~-~~VITPN~~E~a~L 241 (396)
+..++.+.+.. .. .. ..+.+.++++.+++ .+.++++||.-........+.+.. ++ .++|.||..|+..|
T Consensus 118 ~~~a~~~hl~~-~~-~~-~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l 194 (328)
T cd01943 118 LIRSSCIHLIC-SP-ER-CASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARL 194 (328)
T ss_pred ccCCCeEEEEC-CH-HH-HHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHH
Confidence 45778888853 21 11 12455566666666 677888998632110000111221 33 69999999999999
Q ss_pred hcccccCCCCCCcHH--HH---HHHHH--HhhCCeEEEEc-CC-ceEEEc--CCeEEEEeccC----CCCCCCCchHHHH
Q 016016 242 VQKVLNCEVNDRDAP--EL---LQSLA--KQIGGVTILQK-GK-SDLISD--GEIAKSVSIYG----SPRRCGGQGDILS 306 (396)
Q Consensus 242 ~g~~~~~~~~~~d~~--~~---a~~La--~~~g~vvVllK-G~-~dvI~d--~~~~~~i~~~G----~~~~t~GTGDvLA 306 (396)
+|... .++.... .. ...+. ...+...|++| |. +.++.+ ++..+.+...- ....++|.||.+.
T Consensus 195 ~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~ 271 (328)
T cd01943 195 LGLPT---SEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFL 271 (328)
T ss_pred hCCCC---CCccchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHH
Confidence 98641 1111111 11 11111 12233334444 43 455555 34344442111 2236999999666
Q ss_pred HHHHHHHhccCChHHHHH
Q 016016 307 GSVAVFLSWARAKGKATT 324 (396)
Q Consensus 307 GiIAa~LA~g~~l~~A~~ 324 (396)
|.+.+.+..|.++++|+.
T Consensus 272 agfl~~l~~g~~~~~al~ 289 (328)
T cd01943 272 GGFAAGLALTKSIDEACI 289 (328)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 555555567888877665
No 77
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=97.45 E-value=0.0022 Score=67.98 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=49.9
Q ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcc-cccccc---hhhhcC-C-CCeeecCCHHHHHHHh
Q 016016 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL-FLVTNS---IDLVSG-Y-PLAVLTPNVNEYKRLV 242 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl-~ll~~~---~~ll~~-~-~~~VITPN~~E~a~L~ 242 (396)
++..++++.++.-...++...+.+..+++.+++.++++++||.-- .+.... .+.+.. + ..+||.||..|+..|+
T Consensus 263 ~l~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Lt 342 (496)
T PLN02543 263 VLKEARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLL 342 (496)
T ss_pred HhCCCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHh
Confidence 456789998874222233334566677788888999999999622 222211 122222 2 3689999999999999
Q ss_pred ccc
Q 016016 243 QKV 245 (396)
Q Consensus 243 g~~ 245 (396)
|..
T Consensus 343 g~~ 345 (496)
T PLN02543 343 DED 345 (496)
T ss_pred CCC
Confidence 853
No 78
>PLN02967 kinase
Probab=97.43 E-value=0.002 Score=69.35 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=98.2
Q ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcc-cccccc---hhhhcC-C-CCeeecCCHHHHHHHh
Q 016016 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL-FLVTNS---IDLVSG-Y-PLAVLTPNVNEYKRLV 242 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl-~ll~~~---~~ll~~-~-~~~VITPN~~E~a~L~ 242 (396)
++..++++.++.-...++...+.+..+++.+++.++++++||.-- .+.... .+.+.. + ..+||.||..|+..|+
T Consensus 332 ~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~Lt 411 (581)
T PLN02967 332 VLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLC 411 (581)
T ss_pred HhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHh
Confidence 457889999874211222233456677778888999999998622 222111 112221 2 3689999999999998
Q ss_pred cccccC--CCCCC-------cHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCe---EEEEec-cCCC--CCCCCchH-H
Q 016016 243 QKVLNC--EVNDR-------DAPELLQSLAKQIGGVTILQK-GK-SDLISDGEI---AKSVSI-YGSP--RRCGGQGD-I 304 (396)
Q Consensus 243 g~~~~~--~~~~~-------d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~---~~~i~~-~G~~--~~t~GTGD-v 304 (396)
|..... +..+. ...+.++.+... ++..|++| |. +.++++++. +..+.. .-.+ ..++|.|| .
T Consensus 412 G~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~-g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF 490 (581)
T PLN02967 412 GIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHE-NLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGI 490 (581)
T ss_pred CCCccccccccccchhccccchHHHHHHHHhC-CCCEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHH
Confidence 843100 00000 011334445432 44344445 43 344444322 221110 1122 36999999 6
Q ss_pred HHHHHHHHHhc-----c-CChHHHHHHHhhhhhhHhhhhhHhhHHHHHhHHHHHHHHHHHhhhhccCceee
Q 016016 305 LSGSVAVFLSW-----A-RAKGKATTRLYYNLSFKLGRQLFCFLSLISCLATYSFLMRLLQSDESNGVGLH 369 (396)
Q Consensus 305 LAGiIAa~LA~-----g-~~l~~A~~~~y~~~~~~aai~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 369 (396)
.||++++++.. + .++++|+. |..+++|++...+. ...++-.+.+.-|..|+...|..
T Consensus 491 ~AGfL~~Ll~g~~~~~g~~~LeeaLr-------fAnAaAAL~vt~~G-A~~glPt~~eV~~~~~~~~~~~~ 553 (581)
T PLN02967 491 VAGLMRMLTVQPHLITDKGYLEKTIK-------YAIDCGVIDQWLLA-RTRGFPPKEDMEDEVEPDPNGIR 553 (581)
T ss_pred HHHHHHHHHhccCcccccccHHHHHH-------HHHHHHHHHhccCC-CccCCCCHHHHhhhccCCccccc
Confidence 66677777652 1 34555444 34444443332222 22233333344577777776653
No 79
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=97.07 E-value=0.0041 Score=62.66 Aligned_cols=148 Identities=15% Similarity=0.008 Sum_probs=79.2
Q ss_pred HHHHHHHHhhc-----CCCCEEEecCcccc--cccch----hhhcCCCCeeecCCHHHHHHHhcccccCCCCCCcHHHHH
Q 016016 191 CVSEIMKHARQ-----SNVPIVIDGDGLFL--VTNSI----DLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELL 259 (396)
Q Consensus 191 ~v~~~l~~a~~-----~~~PvVLDpdgl~l--l~~~~----~ll~~~~~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a 259 (396)
.+..+++.++. ++..+++||+.... ..... ++++ ..+++.||..|+..| . . .+
T Consensus 136 ~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~--~iDil~~ne~Ea~~l-~------~-----~~-- 199 (335)
T PLN02630 136 TLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLP--RIGFLKASSEEALFI-D------V-----EE-- 199 (335)
T ss_pred HHHHHHHHhhhheeccCceEEecCCcccccccchhhHHHHHHHHH--hCCEEEecHHHHhhc-C------H-----HH--
Confidence 34445555544 57788999975311 11000 2222 368999999999876 1 0 11
Q ss_pred HHHHHhhCCeEEEEcCCceEEEcCCeEEEEecc-CCCCCCCCchHHHHHHHHHHHhccCChHHHHHHHhhhhhhHhhhhh
Q 016016 260 QSLAKQIGGVTILQKGKSDLISDGEIAKSVSIY-GSPRRCGGQGDILSGSVAVFLSWARAKGKATTRLYYNLSFKLGRQL 338 (396)
Q Consensus 260 ~~La~~~g~vvVllKG~~dvI~d~~~~~~i~~~-G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~~~y~~~~~~aai~~ 338 (396)
+. +.+.++|-+...+.++.++++.+.+... -....++|.||.+.|.+.+.+..|.++++|...+ .+.++
T Consensus 200 --~~-~~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~g~~~~~a~~~A-------~a~aa 269 (335)
T PLN02630 200 --VR-QKCCVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQGLAVPDAALLG-------NYFGS 269 (335)
T ss_pred --Hc-cCCEEEEEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHH
Confidence 11 2233444433445666666666665321 1222699999966555555566788888776532 23333
Q ss_pred HhhHHHHHhHHHHHHHHHHHhhhhcc
Q 016016 339 FCFLSLISCLATYSFLMRLLQSDESN 364 (396)
Q Consensus 339 ~~~~~~a~~~a~~~~~~~~~~~~~~~ 364 (396)
++....--..-..+++.+.++.++-.
T Consensus 270 ~~v~~~G~~~~~~~~l~~~~~~i~i~ 295 (335)
T PLN02630 270 LAVEQVGIPKFDLRQLQRVKDEVQRR 295 (335)
T ss_pred HHhCcCCCCCCCHHHHHHHhhcEEEE
Confidence 32222222333555666666666554
No 80
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=96.38 E-value=0.046 Score=52.95 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=67.7
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC-------CCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHh
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN-------VPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~-------~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~ 242 (396)
.+++|.+.++.-++ .... ++++.+++.+ +++++|+.... ....++++ ..+++.+|..|+..+
T Consensus 125 ~~~~~~~~~~g~~~--~~~~----~~~~~~~~~~~~~~~~~~~v~~d~~~~~--~~~~~~l~--~~di~~~n~~~~~~~- 193 (290)
T cd01939 125 LTQYGWIHFEGRNP--DETL----RMMQHIEEHNNRRPEIRITISVEVEKPR--EELLELAA--YCDVVFVSKDWAQSR- 193 (290)
T ss_pred hccCCEEEEeccCH--HHHH----HHHHHHHHhcCcCCCcceEEEEEeccCc--hhhhhHHh--hCCEEEEEhHHHHhc-
Confidence 37889999964222 2222 3333333333 57788875311 10012332 257999999887754
Q ss_pred cccccCCCCCCcHHHHHHHHH-HhhCCeEEEEc-CC-ceEEEcC-CeEEEEeccC--CCCCCCCchHHH-HHHHHHHHhc
Q 016016 243 QKVLNCEVNDRDAPELLQSLA-KQIGGVTILQK-GK-SDLISDG-EIAKSVSIYG--SPRRCGGQGDIL-SGSVAVFLSW 315 (396)
Q Consensus 243 g~~~~~~~~~~d~~~~a~~La-~~~g~vvVllK-G~-~dvI~d~-~~~~~i~~~G--~~~~t~GTGDvL-AGiIAa~LA~ 315 (396)
+.. +. .+.++.+. ...+...|++| |. +.++.++ +..+.+...- ....++|.||.+ ||++++++ +
T Consensus 194 ~~~-----~~---~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~-~ 264 (290)
T cd01939 194 GYK-----SP---EECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALN-K 264 (290)
T ss_pred CcC-----CH---HHHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHH-c
Confidence 431 11 12222221 11233233333 44 3455554 3344443111 123699999955 55555555 7
Q ss_pred cCC-hHHHHH
Q 016016 316 ARA-KGKATT 324 (396)
Q Consensus 316 g~~-l~~A~~ 324 (396)
|.+ +++|+.
T Consensus 265 g~~~~~~a~~ 274 (290)
T cd01939 265 GPDDLSEALD 274 (290)
T ss_pred CCccHHHHHH
Confidence 884 887776
No 81
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=96.34 E-value=0.032 Score=53.28 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=68.3
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcC-CC-CeeecCCHHHHHHHhccccc
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YP-LAVLTPNVNEYKRLVQKVLN 247 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~-~~-~~VITPN~~E~a~L~g~~~~ 247 (396)
+..+|.+.++. .. . ..++++.+++.++++++||...... ..+.. ++ .+++.+|..+
T Consensus 111 l~~~~~v~~~~-~~-~------~~~~~~~~~~~~~~v~~D~~~~~~~----~~~~~~~~~~d~~~~~~~~---------- 168 (260)
T PRK09813 111 LAQYDIVHAAI-WG-H------AEDAFPQLHAAGKLTAFDFSDKWDS----PLWQTLVPHLDYAFASAPQ---------- 168 (260)
T ss_pred HHhCCEEEEec-cc-h------HHHHHHHHHHcCCeEEEEcCCCccH----HHHHHhCCceeEEEecCCc----------
Confidence 46789998853 11 1 1234445567899999999643210 11211 22 3455454221
Q ss_pred CCCCCCcHHHHHHHHHHhhCCeEEEEc-CC-ceEEEcCCeEEEEec-cCCCCCCCCchHHHHHHHHHHHhccCChHHHHH
Q 016016 248 CEVNDRDAPELLQSLAKQIGGVTILQK-GK-SDLISDGEIAKSVSI-YGSPRRCGGQGDILSGSVAVFLSWARAKGKATT 324 (396)
Q Consensus 248 ~~~~~~d~~~~a~~La~~~g~vvVllK-G~-~dvI~d~~~~~~i~~-~G~~~~t~GTGDvLAGiIAa~LA~g~~l~~A~~ 324 (396)
...+..+.++.+.+ .++..|++| |. +.++.++++.+.+.. .-....++|.||.+.+.+...+..|.++++|..
T Consensus 169 ---~~~~~~~~~~~~~~-~g~~~viit~G~~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g~~~~~al~ 244 (260)
T PRK09813 169 ---EDEFLRLKMKAIVA-RGAGVVIVTLGENGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAGMTLPQAMA 244 (260)
T ss_pred ---chHHHHHHHHHHHH-cCCCEEEEEECCCceEEEECCEEEecCCcccCCCCCCCchHHHHHHHHHHHHcCCCHHHHHH
Confidence 11223455566644 343344444 54 455566666554431 111225999999655444444458898888766
No 82
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=94.95 E-value=0.3 Score=49.03 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=90.3
Q ss_pred HHhccCCEEEEcCCCC--CCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcC-CC-CeeecCCHHHHHHHhc
Q 016016 168 KWMERFDCLVVGPGLG--RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YP-LAVLTPNVNEYKRLVQ 243 (396)
Q Consensus 168 ~~~~~~dalvIG~Gl~--~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~-~~-~~VITPN~~E~a~L~g 243 (396)
.+++++.+++|. |.- -.++ .+..+.+++.+.+.|.++--++........+.+.+ .+ .++|=.|..|++.++.
T Consensus 155 ~lveka~v~yv~-Gffltv~p~---ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~ 230 (343)
T KOG2854|consen 155 ALVEKAKVFYVA-GFFLTVSPD---AIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFAR 230 (343)
T ss_pred hhhhheeEEEEE-EEEEEeChH---HHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHH
Confidence 345678888886 222 2344 44455566667777777777766555444433333 45 6999999999999986
Q ss_pred ccccCCCCCCcHHHHHHHHHH--hhC---CeEEEEc-CCceE-EEcCCeEEEEe-ccCC-CC--CCCCchHHHHHHHHHH
Q 016016 244 KVLNCEVNDRDAPELLQSLAK--QIG---GVTILQK-GKSDL-ISDGEIAKSVS-IYGS-PR--RCGGQGDILSGSVAVF 312 (396)
Q Consensus 244 ~~~~~~~~~~d~~~~a~~La~--~~g---~vvVllK-G~~dv-I~d~~~~~~i~-~~G~-~~--~t~GTGDvLAGiIAa~ 312 (396)
.. +. ...|..+.+..++. +.+ +-+|+++ |...+ +..++.++... .... .. .+.|.||+++|-..+.
T Consensus 231 ~~-~~--~t~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~ 307 (343)
T KOG2854|consen 231 AH-GW--ETKDVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQ 307 (343)
T ss_pred hh-CC--cccchHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHH
Confidence 43 21 22344444444432 111 1133344 33222 23333333322 1111 11 4999999999888888
Q ss_pred HhccCChHHHHHH-Hhhh
Q 016016 313 LSWARAKGKATTR-LYYN 329 (396)
Q Consensus 313 LA~g~~l~~A~~~-~y~~ 329 (396)
+.+|.++++.++. .|..
T Consensus 308 l~qg~~l~~cir~g~~aa 325 (343)
T KOG2854|consen 308 LVQGKSLEECIRAGSYAA 325 (343)
T ss_pred HHcCCCHHHHHHHHHHHh
Confidence 9999999988873 4443
No 83
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=89.24 E-value=5.2 Score=40.42 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.3
Q ss_pred CCCCchHHHHHHHHHHHhcc
Q 016016 297 RCGGQGDILSGSVAVFLSWA 316 (396)
Q Consensus 297 ~t~GTGDvLAGiIAa~LA~g 316 (396)
-++|+||.+-|.++..|+.|
T Consensus 263 DtTGAGDsFvgal~~~L~~~ 282 (330)
T KOG2855|consen 263 DTTGAGDSFVGALAVQLVRG 282 (330)
T ss_pred cCCCchHHHHHHHHHHHhhc
Confidence 59999999999999999998
No 84
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=86.57 E-value=5.8 Score=41.79 Aligned_cols=62 Identities=13% Similarity=0.267 Sum_probs=38.8
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHH
Q 016016 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYK 239 (396)
Q Consensus 172 ~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a 239 (396)
.+|.+..-.-+ + ...|..+++ +++++++|++.|--..-...-.+.+.....+.||||..|+-
T Consensus 425 ~a~~I~~DsNi--S---~~~Ma~il~-ak~~k~~V~fEPTd~~k~~K~fk~l~v~~i~~i~PN~~Ell 486 (614)
T KOG3009|consen 425 SADFILLDSNI--S---VPVMARILE-AKKHKKQVWFEPTDIDKVKKVFKTLLVGAITAISPNANELL 486 (614)
T ss_pred cCCEEEEcCCC--C---HHHHHHHHH-hhhccCceEecCCCchhhhhhhhhcceeeEEeeCCCHHHHH
Confidence 67777775433 2 236777777 67888999999953332221112222123588999999983
No 85
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.24 E-value=27 Score=28.39 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
++...+.++|.+++=++.. +.. .+..+-+.+++.++|++.=-
T Consensus 41 ~l~~~i~~aD~VIv~t~~v-sH~---~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYV-SHN---AMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHhcCCCCEEEEEeCCc-ChH---HHHHHHHHHHHcCCcEEEEC
Confidence 4666678999999988776 433 34444456678899988644
No 86
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=66.16 E-value=44 Score=35.77 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcc
Q 016016 81 HKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA 124 (396)
Q Consensus 81 hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~ 124 (396)
.|-..|++.+ |..-+.......-+.+....|+++|.+.++...
T Consensus 230 ~~d~~~~l~v-gaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~ 272 (505)
T PLN02274 230 SVGKDGKLLV-GAAIGTRESDKERLEHLVKAGVDVVVLDSSQGD 272 (505)
T ss_pred ccCCCCCEEE-EEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4455676555 443444556667777888889999999998643
No 87
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=64.63 E-value=17 Score=35.46 Aligned_cols=83 Identities=16% Similarity=0.287 Sum_probs=55.2
Q ss_pred hhHHHHHHHHhcc-CCEEEEc-CCCCC-------CHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCC---
Q 016016 160 SKILAEVDKWMER-FDCLVVG-PGLGR-------DPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYP--- 227 (396)
Q Consensus 160 ~~~~~ev~~~~~~-~dalvIG-~Gl~~-------~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~--- 227 (396)
++.++++.+++.. ..++.|| +||.. -+.+.+.+...++.|++.++|+|+=..... ..-.+.+++..
T Consensus 73 ~~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~--~d~~~iL~~~~~~~ 150 (256)
T COG0084 73 EEDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH--EDTLEILKEEGAPV 150 (256)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH--HHHHHHHHhcCCCC
Confidence 4566788888774 8999999 88862 123677888888999999999999664321 10012343221
Q ss_pred C---eeecCCHHHHHHHhcc
Q 016016 228 L---AVLTPNVNEYKRLVQK 244 (396)
Q Consensus 228 ~---~VITPN~~E~a~L~g~ 244 (396)
. --.|+...++.++...
T Consensus 151 ~gi~HcFsGs~e~a~~~~d~ 170 (256)
T COG0084 151 GGVLHCFSGSAEEARKLLDL 170 (256)
T ss_pred CEEEEccCCCHHHHHHHHHc
Confidence 1 2368888888888654
No 88
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.24 E-value=19 Score=37.75 Aligned_cols=101 Identities=16% Similarity=0.375 Sum_probs=61.1
Q ss_pred HHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCC-CEEEecCcccccccchhhhcCCC--CeeecCCHHHH
Q 016016 162 ILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV-PIVIDGDGLFLVTNSIDLVSGYP--LAVLTPNVNEY 238 (396)
Q Consensus 162 ~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~-PvVLDpdgl~ll~~~~~ll~~~~--~~VITPN~~E~ 238 (396)
+++|+..+....++-+-+.|...++ .++..+.++.+++.+. -+|+|..|-..+.. +++.+.. ..++.||..
T Consensus 143 A~eQL~~La~q~~v~~f~~~~~~~P--v~Iak~al~~ak~~~~DvvIvDTAGRl~ide--~Lm~El~~Ik~~~~P~E~-- 216 (451)
T COG0541 143 AIEQLKQLAEQVGVPFFGSGTEKDP--VEIAKAALEKAKEEGYDVVIVDTAGRLHIDE--ELMDELKEIKEVINPDET-- 216 (451)
T ss_pred HHHHHHHHHHHcCCceecCCCCCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcccccH--HHHHHHHHHHhhcCCCeE--
Confidence 4478888888888888877554443 5577788888776533 47889988655543 2332211 135555421
Q ss_pred HHHhcccccCCC-CCCcHHHHHHHHHHhhCCeEEEEc
Q 016016 239 KRLVQKVLNCEV-NDRDAPELLQSLAKQIGGVTILQK 274 (396)
Q Consensus 239 a~L~g~~~~~~~-~~~d~~~~a~~La~~~g~vvVllK 274 (396)
|+= .|. .-+++...|+.|-+..+..-|+++
T Consensus 217 --llV----vDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 217 --LLV----VDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred --EEE----EecccchHHHHHHHHHhhhcCCceEEEE
Confidence 211 111 236788888988887765555554
No 89
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=61.96 E-value=70 Score=33.60 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=59.3
Q ss_pred CCCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchh----h---hcccCCcee--eecccccccccCC
Q 016016 79 SKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP----V---IKSYSPELI--VHPILEESYNISG 149 (396)
Q Consensus 79 ~~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~----~---i~~~~PE~~--~~~~~~~~~~~~~ 149 (396)
+..|-..|+ ++++|.-+-....+.-+.+....|++.+.+.+.+.... . ++...|++. .-.+
T Consensus 204 ~~~~d~~g~-l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v--------- 273 (450)
T TIGR01302 204 HASKDENGR-LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV--------- 273 (450)
T ss_pred cceEeCCCC-EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC---------
Confidence 344444555 66666555544555556677778999999988655322 1 223334432 2121
Q ss_pred CchhhhhhcchhHHHHHHHHhccCCEEEEcCCCCC----------CHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 150 LEDEERRCISSKILAEVDKWMERFDCLVVGPGLGR----------DPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 150 ~~~~~~~~is~~~~~ev~~~~~~~dalvIG~Gl~~----------~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
.+.+....+.+ ..+|++.+|+|-+. ...++..+.++.+.+++.++|++-|.
T Consensus 274 --------~t~~~a~~l~~--aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadG 334 (450)
T TIGR01302 274 --------ATAEQAKALID--AGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADG 334 (450)
T ss_pred --------CCHHHHHHHHH--hCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeC
Confidence 12222222222 36899987744320 11233455555555556677877665
No 90
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=61.96 E-value=31 Score=33.35 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=47.1
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhh-cCCCCEEEecCcccccccch------hhhcCCCCeeecCCHHHHHHHhc
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHAR-QSNVPIVIDGDGLFLVTNSI------DLVSGYPLAVLTPNVNEYKRLVQ 243 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~-~~~~PvVLDpdgl~ll~~~~------~ll~~~~~~VITPN~~E~a~L~g 243 (396)
...|++.||--++-+.+ .+.++++.++ +.++|+||=|.....+.... .++....+..|+.+.-|.+.+++
T Consensus 40 ~GTDaImIGGS~gvt~~---~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~svLNS~n~~~i~gaq~~~a~~~~ 116 (240)
T COG1646 40 AGTDAIMIGGSDGVTEE---NVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSVLNSDNPYWIVGAQVEGAKLVG 116 (240)
T ss_pred cCCCEEEECCcccccHH---HHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEEecCCCcccccchhhhhhHHHH
Confidence 46899999854444433 3444445555 68999999997665443321 24443457888999999888887
Q ss_pred cc
Q 016016 244 KV 245 (396)
Q Consensus 244 ~~ 245 (396)
+.
T Consensus 117 ~~ 118 (240)
T COG1646 117 KL 118 (240)
T ss_pred hh
Confidence 53
No 91
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=58.54 E-value=35 Score=32.71 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=41.3
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccch------hhhcCCCCeeecCCHHHHHHHhc
Q 016016 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI------DLVSGYPLAVLTPNVNEYKRLVQ 243 (396)
Q Consensus 172 ~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~------~ll~~~~~~VITPN~~E~a~L~g 243 (396)
..|++.||--.+-+.+ .+.++++.+++..+|+||=|.....+.... .++....+..|+....|+..+++
T Consensus 27 gtdai~vGGS~~vt~~---~~~~~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~ 101 (223)
T TIGR01768 27 GTDAILIGGSQGVTYE---KTDTLIEALRRYGLPIILFPSNPTNVSRDADALFFPSVLNSDDPYWIIGAQIEAAPKFK 101 (223)
T ss_pred CCCEEEEcCCCcccHH---HHHHHHHHHhccCCCEEEeCCCccccCcCCCEEEEEEeecCCCchHHHhHHHHHHHHHh
Confidence 5799999853433333 344455555667799999996554333221 23333346677777777766654
No 92
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=56.74 E-value=30 Score=33.38 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=37.7
Q ss_pred HHHHHHHHhccCCEEEEc-CCCCC-CHHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 162 ILAEVDKWMERFDCLVVG-PGLGR-DPYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 162 ~~~ev~~~~~~~dalvIG-~Gl~~-~~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
.++++.+++++-+++.|| +|+-. .++-.+.+.+-++.|++.++|+|+-.-
T Consensus 84 ~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTP 135 (254)
T COG1099 84 VLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTP 135 (254)
T ss_pred HHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCC
Confidence 456788888888999999 77754 233356777777888899999999763
No 93
>PRK10425 DNase TatD; Provisional
Probab=56.30 E-value=26 Score=33.95 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=50.8
Q ss_pred HHHHHHHHhccCCEEEEc-CCCCCC------HHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCC----CC--
Q 016016 162 ILAEVDKWMERFDCLVVG-PGLGRD------PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY----PL-- 228 (396)
Q Consensus 162 ~~~ev~~~~~~~dalvIG-~Gl~~~------~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~----~~-- 228 (396)
.++++.+++....++.|| +||... ..+.+.+...++.|.+.+.|+||=..... ..-.+.++++ +.
T Consensus 73 ~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~--~~~l~iL~~~~~~~~~~i 150 (258)
T PRK10425 73 TEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAH--ERFMALLEPWLDKLPGAV 150 (258)
T ss_pred HHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHhccCCCCeE
Confidence 346677777667888999 888631 24567888888888899999998665321 1111233321 11
Q ss_pred -eeecCCHHHHHHHhcc
Q 016016 229 -AVLTPNVNEYKRLVQK 244 (396)
Q Consensus 229 -~VITPN~~E~a~L~g~ 244 (396)
-..|++..++.++...
T Consensus 151 ~H~fsG~~~~~~~~l~~ 167 (258)
T PRK10425 151 LHCFTGTREEMQACLAR 167 (258)
T ss_pred EEecCCCHHHHHHHHHC
Confidence 2356677777777653
No 94
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=54.91 E-value=1e+02 Score=31.21 Aligned_cols=99 Identities=10% Similarity=0.210 Sum_probs=57.3
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchh--------------------------hhcccCCceeee
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP--------------------------VIKSYSPELIVH 138 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~--------------------------~i~~~~PE~~~~ 138 (396)
.-+|++||. +|-|-..+..-.++|.|-++++-...+.. .+....|++.+.
T Consensus 24 ~~~VlIiG~----GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGA----GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECC----CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 347899986 66666666666778988898876654211 122233444433
Q ss_pred cccccccccCCCchhhhhhcchhHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 139 PILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~is~~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
.+.. .++. +.++++++.+|.++.+. .+.++...+.++ +.+.++|+|.=.
T Consensus 100 ~~~~--------------~~~~---~~~~~~~~~~DlVid~~---D~~~~r~~in~~---~~~~~ip~i~~~ 148 (338)
T PRK12475 100 PVVT--------------DVTV---EELEELVKEVDLIIDAT---DNFDTRLLINDL---SQKYNIPWIYGG 148 (338)
T ss_pred EEec--------------cCCH---HHHHHHhcCCCEEEEcC---CCHHHHHHHHHH---HHHcCCCEEEEE
Confidence 3211 1222 23455678899999865 244433334433 456789988754
No 95
>PRK10812 putative DNAse; Provisional
Probab=54.16 E-value=32 Score=33.47 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=51.0
Q ss_pred HHHHHHHhccCCEEEEc-CCCCCC------HHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCC--C--C---
Q 016016 163 LAEVDKWMERFDCLVVG-PGLGRD------PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY--P--L--- 228 (396)
Q Consensus 163 ~~ev~~~~~~~dalvIG-~Gl~~~------~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~--~--~--- 228 (396)
++++.+++....++.|| +|+... +.+.+.+...++.+.+.++||++=..... ....+++++. + .
T Consensus 77 ~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~--~~~l~iL~~~~~~~~~~v~ 154 (265)
T PRK10812 77 VEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR--ADTLAILREEKVTDCGGVL 154 (265)
T ss_pred HHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch--HHHHHHHHhhcCCCCCEEE
Confidence 45677777777899998 787631 34677888888888899999999754321 1111233321 1 1
Q ss_pred eeecCCHHHHHHHhcc
Q 016016 229 AVLTPNVNEYKRLVQK 244 (396)
Q Consensus 229 ~VITPN~~E~a~L~g~ 244 (396)
-..|++..++..+...
T Consensus 155 H~fsG~~~~a~~~~~~ 170 (265)
T PRK10812 155 HCFTEDRETAGKLLDL 170 (265)
T ss_pred EeecCCHHHHHHHHHC
Confidence 2357777777777653
No 96
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=54.04 E-value=1.5e+02 Score=25.93 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=33.9
Q ss_pred HHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCccccc
Q 016016 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLV 216 (396)
Q Consensus 164 ~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll 216 (396)
+.+.+.++.+|+++...|....+ .+.+..+++.+++.+++-++--.+....
T Consensus 52 ~~~~~al~~~d~vi~~~~~~~~~--~~~~~~~~~a~~~~~~~~~v~~s~~~~~ 102 (183)
T PF13460_consen 52 DSVKAALKGADAVIHAAGPPPKD--VDAAKNIIEAAKKAGVKRVVYLSSAGVY 102 (183)
T ss_dssp HHHHHHHTTSSEEEECCHSTTTH--HHHHHHHHHHHHHTTSSEEEEEEETTGT
T ss_pred hhhhhhhhhcchhhhhhhhhccc--ccccccccccccccccccceeeeccccC
Confidence 45666677999999987765443 4566667777767787766655544443
No 97
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=53.01 E-value=19 Score=30.32 Aligned_cols=44 Identities=23% Similarity=0.525 Sum_probs=27.4
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCE-EEecCccc
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPI-VIDGDGLF 214 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~Pv-VLDpdgl~ 214 (396)
++.+.+..+|++++||-+ .. .+.++-+.+.+.++|+ |+|+-..+
T Consensus 41 e~~~~~~~~DvvLlGPQv---~y---~~~~~~~~~~~~giPV~vI~~~dYG 85 (102)
T COG1440 41 ELSEYIDNADVVLLGPQV---RY---MLKQLKEAAEEKGIPVEVIDMLDYG 85 (102)
T ss_pred HHHHhhhcCCEEEEChHH---HH---HHHHHHHHhcccCCCeEEeCHHHcc
Confidence 556667799999999833 11 1223334455678887 77874333
No 98
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=51.42 E-value=20 Score=35.08 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=33.1
Q ss_pred HHHHHHhccCCEEEEcCCCCCCH--HHHHHHHHHHHHhhcCCCCEEEecCccccc
Q 016016 164 AEVDKWMERFDCLVVGPGLGRDP--YLLECVSEIMKHARQSNVPIVIDGDGLFLV 216 (396)
Q Consensus 164 ~ev~~~~~~~dalvIG~Gl~~~~--~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll 216 (396)
+++....+++|.+++.-|+|+.. -+.+.+. +..+.|+|+|++.+..+
T Consensus 52 ~~l~~a~~r~D~vI~tGGLGPT~DDiT~e~vA------ka~g~~lv~~~~al~~i 100 (255)
T COG1058 52 EALREASERADVVITTGGLGPTHDDLTAEAVA------KALGRPLVLDEEALAMI 100 (255)
T ss_pred HHHHHHHhCCCEEEECCCcCCCccHhHHHHHH------HHhCCCcccCHHHHHHH
Confidence 45666677899999999999753 3333333 23588999999876543
No 99
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=48.51 E-value=1.1e+02 Score=31.22 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=58.1
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHh--hcCCCEEEEEecCcchhh-------hcccCCcee--eecccccccccCCCchh
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISAL--KIGADLSHVFCTKDAAPV-------IKSYSPELI--VHPILEESYNISGLEDE 153 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAl--r~GaglVtv~t~~~~~~~-------i~~~~PE~~--~~~~~~~~~~~~~~~~~ 153 (396)
.+++.+--| ..-.-+.-..+-+ ..+++++.+.++...... ++..+|... .-.+
T Consensus 95 ~~~~~vsvG---~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV------------- 158 (343)
T TIGR01305 95 LQNVAVSSG---SSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNV------------- 158 (343)
T ss_pred cceEEEEec---cCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecc-------------
Confidence 456666334 3333333322333 346999999998775542 334555433 2212
Q ss_pred hhhhcchhHHHHHHHHhccCCEEEEcCCCCCCH----------HHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 154 ERRCISSKILAEVDKWMERFDCLVVGPGLGRDP----------YLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 154 ~~~~is~~~~~ev~~~~~~~dalvIG~Gl~~~~----------~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
.+.+...++.+ .-+|+++||+|-|..- .++..+.+..+.+.+.++|++.|.-
T Consensus 159 ----~T~e~a~~Li~--aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGG 220 (343)
T TIGR01305 159 ----VTGEMVEELIL--SGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGG 220 (343)
T ss_pred ----cCHHHHHHHHH--cCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 22223333332 3789999986654321 2456666666666666888888874
No 100
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=46.89 E-value=1.5e+02 Score=31.89 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=30.0
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcc
Q 016016 77 DPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA 124 (396)
Q Consensus 77 ~~~~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~ 124 (396)
.|++-|...|+..+.++-.. . -...-+.+....|++++.+-++...
T Consensus 221 ~P~a~~d~~grL~V~~av~~-~-~~~~ra~~Lv~aGvd~i~vd~a~g~ 266 (502)
T PRK07107 221 NPLELLDSSKRYVVGAGINT-R-DYAERVPALVEAGADVLCIDSSEGY 266 (502)
T ss_pred ChhhhhhhccCeeeeeccCh-h-hHHHHHHHHHHhCCCeEeecCcccc
Confidence 45666777899998888522 1 2233344556679999988766554
No 101
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=46.24 E-value=1.5e+02 Score=29.09 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcc
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA 124 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~ 124 (396)
.=+|+++|. +|-|-.++..-.++|.+-++++-....
T Consensus 30 ~s~VlVvG~----GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGI----GGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECc----CHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 347999987 888888888889999999998876543
No 102
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=45.69 E-value=84 Score=29.63 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=37.3
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhc-CCCCEEEecCcccccccch------hhhcCCCCeeecCCHHHHHHH
Q 016016 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQ-SNVPIVIDGDGLFLVTNSI------DLVSGYPLAVLTPNVNEYKRL 241 (396)
Q Consensus 172 ~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~-~~~PvVLDpdgl~ll~~~~------~ll~~~~~~VITPN~~E~a~L 241 (396)
..|++.||.-++-+.+ .+.++++.+++ .++|+||=|.....+.... .++....+..|+....++..+
T Consensus 24 gtDaI~VGGS~gvt~~---~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~ 97 (205)
T TIGR01769 24 GTDAIMVGGSLGIVES---NLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFMSLLNSADTYFIVGAQILGAIT 97 (205)
T ss_pred CCCEEEEcCcCCCCHH---HHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEEEeecCCCcchhhhHHHHHHHH
Confidence 4699999844433433 33334444444 5899999986554333221 233323456666666665533
No 103
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=44.83 E-value=1.2e+02 Score=31.17 Aligned_cols=92 Identities=24% Similarity=0.306 Sum_probs=53.7
Q ss_pred cHHHHHHHHhhcCCCEEEEEecCcchhh-------hcccCC--ceeeecccccccccCCCchhhhhhcchhHHHHHHHHh
Q 016016 100 APYFAAISALKIGADLSHVFCTKDAAPV-------IKSYSP--ELIVHPILEESYNISGLEDEERRCISSKILAEVDKWM 170 (396)
Q Consensus 100 A~ilAalaAlr~GaglVtv~t~~~~~~~-------i~~~~P--E~~~~~~~~~~~~~~~~~~~~~~~is~~~~~ev~~~~ 170 (396)
..+.-..+-...|++++.+.++...+.. ++...| .+|.-.+ .+. +...+++
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV-----------------~T~---e~a~~L~ 167 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNV-----------------VTY---EGAKDLI 167 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE------------------SH---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEeccc-----------------CCH---HHHHHHH
Confidence 3455555556679999999988765542 334455 3333322 222 2333333
Q ss_pred c-cCCEEEEcCCCCCCH----------HHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 171 E-RFDCLVVGPGLGRDP----------YLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 171 ~-~~dalvIG~Gl~~~~----------~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
+ -+|++.+|+|-+.-- .+...+.+..+.+++.++|+|-|..
T Consensus 168 ~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGG 219 (352)
T PF00478_consen 168 DAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGG 219 (352)
T ss_dssp HTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS
T ss_pred HcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCC
Confidence 3 589999997755321 1344666777777888999999984
No 104
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=44.49 E-value=2.2e+02 Score=26.06 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=23.0
Q ss_pred HHHhccCCEEEEcCC-CCCCHHHHHHHHHHHHHhhcCCCCE-EEecCcc
Q 016016 167 DKWMERFDCLVVGPG-LGRDPYLLECVSEIMKHARQSNVPI-VIDGDGL 213 (396)
Q Consensus 167 ~~~~~~~dalvIG~G-l~~~~~~~~~v~~~l~~a~~~~~Pv-VLDpdgl 213 (396)
..++..+|++++=|| .|+=+|..+.+. + .+....++|+ +++.++.
T Consensus 91 ~~m~~~sda~I~lPGG~GTL~El~e~~~-~-~qlg~~~kPiil~n~~g~ 137 (178)
T TIGR00730 91 AMMAELADAFIAMPGGFGTLEELFEVLT-W-AQLGIHQKPIILFNVNGH 137 (178)
T ss_pred HHHHHhCCEEEEcCCCcchHHHHHHHHH-H-HHcCCCCCCEEEECCcch
Confidence 345677899888664 333334333321 1 2223455665 5566553
No 105
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.16 E-value=81 Score=32.95 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEe
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFC 120 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t 120 (396)
..+++|+|+ ++.|+.++....+.|.. |++..
T Consensus 16 ~~~v~viG~----G~~G~~~A~~L~~~G~~-V~~~d 46 (480)
T PRK01438 16 GLRVVVAGL----GVSGFAAADALLELGAR-VTVVD 46 (480)
T ss_pred CCEEEEECC----CHHHHHHHHHHHHCCCE-EEEEe
Confidence 347999988 88888887666666875 56554
No 106
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=42.97 E-value=89 Score=30.07 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=42.1
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccch------hhhcCCCCeeecCCHHHHHHHh
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI------DLVSGYPLAVLTPNVNEYKRLV 242 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~------~ll~~~~~~VITPN~~E~a~L~ 242 (396)
...|++.||--.+-..+ .+.++++..++.++|+||=|.....+.... .++....+..|+.+..|+..++
T Consensus 31 ~gtdai~vGGS~~vt~~---~~~~~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~ 105 (232)
T PRK04169 31 SGTDAIIVGGSDGVTEE---NVDELVKAIKEYDLPVILFPGNIEGISPGADAYLFPSVLNSRNPYWIIGAHVEAAPII 105 (232)
T ss_pred cCCCEEEEcCCCccchH---HHHHHHHHHhcCCCCEEEeCCCccccCcCCCEEEEEEEecCCCcchHhhHHHHHHHHH
Confidence 46899999853433333 344455555667899999996554433221 2333334667777777776665
No 107
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.89 E-value=1.2e+02 Score=31.79 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=23.0
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
+..+|.+|++||+..+... + +.+++.++|++=|..
T Consensus 61 ~~~~d~vV~SPgI~~~~p~---~----~~a~~~gi~v~~e~e 95 (454)
T PRK01368 61 WQNLDKIVLSPGIPLTHEI---V----KIAKNFNIPITSDID 95 (454)
T ss_pred hhCCCEEEECCCCCCCCHH---H----HHHHHCCCceecHHH
Confidence 3578999999999865432 2 223456777775553
No 108
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.57 E-value=1.3e+02 Score=31.20 Aligned_cols=29 Identities=24% Similarity=-0.054 Sum_probs=21.4
Q ss_pred eEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEe
Q 016016 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVFC 120 (396)
Q Consensus 87 ~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t 120 (396)
+|++||. +|+|+-++.-..+.|.. |++.-
T Consensus 2 ~v~viG~----G~sG~s~a~~l~~~G~~-V~~~D 30 (459)
T PRK02705 2 IAHVIGL----GRSGIAAARLLKAQGWE-VVVSD 30 (459)
T ss_pred eEEEEcc----CHHHHHHHHHHHHCCCE-EEEEC
Confidence 5788887 88999887777777874 44443
No 109
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=41.15 E-value=95 Score=29.63 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=44.0
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccccch------hhhcCCCCeeecCCHHHHHHHhcc
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI------DLVSGYPLAVLTPNVNEYKRLVQK 244 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~------~ll~~~~~~VITPN~~E~a~L~g~ 244 (396)
...|++.||--.+-+ +..+.+.++++...+ .+|+|+=|.......... .++....+..|+....|+..+++.
T Consensus 24 ~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~-~~Pvilfp~~~~~i~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~ 101 (219)
T cd02812 24 SGTDAIMVGGSDGVS-STLDNVVRLIKRIRR-PVPVILFPSNPEAVSPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGK 101 (219)
T ss_pred cCCCEEEECCccchh-hhHHHHHHHHHHhcC-CCCEEEeCCCccccCcCCCEEEEEeeecCCCchHHHHHHHHHHHHhcc
Confidence 457999998433333 445555556665543 599999997654333221 233333467777777777777654
No 110
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=40.78 E-value=2.6e+02 Score=26.73 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=26.0
Q ss_pred CeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcc
Q 016016 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA 124 (396)
Q Consensus 86 G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~ 124 (396)
-+|+++|. +|-|-..+..-.++|.+-+++.-...+
T Consensus 25 ~~VlvvG~----GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGL----GGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECc----CHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 37888876 667777777777789998988766544
No 111
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=40.61 E-value=2.1e+02 Score=30.51 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=27.2
Q ss_pred CCCCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCc
Q 016016 78 PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (396)
Q Consensus 78 ~~~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~ 123 (396)
+++-|-..|++++ |..-+.....+.-+.+....|++++.+.+++.
T Consensus 220 p~a~~D~~GrL~V-gaavg~~~~~~~~~~~l~~ag~d~i~id~a~G 264 (495)
T PTZ00314 220 PNASLDSNGQLLV-GAAISTRPEDIERAAALIEAGVDVLVVDSSQG 264 (495)
T ss_pred chhhhccCCCEEE-EEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 4445555677655 22222333345556677888999999887543
No 112
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=39.64 E-value=1.2e+02 Score=28.66 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=28.6
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEe
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFC 120 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t 120 (396)
.-+|+++.|.-.-+|-++-++....+.|.. |++.-
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~ 83 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLL 83 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEE
Confidence 568999999999999999999988888854 44443
No 113
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=38.29 E-value=70 Score=34.13 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=36.6
Q ss_pred hHHHHHHHHhccCCEEEEcCCCC----CCHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 161 KILAEVDKWMERFDCLVVGPGLG----RDPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 161 ~~~~ev~~~~~~~dalvIG~Gl~----~~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
+.++.++++++..|++.||+|=+ ..++......++++.+++.++|+++=.
T Consensus 226 ~av~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~AT 279 (480)
T cd00288 226 EGVNNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITAT 279 (480)
T ss_pred HHHHhHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 44566777777799999997622 134556677788888999999998743
No 114
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.54 E-value=2.1e+02 Score=30.51 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=49.1
Q ss_pred HHhhcCCCEEEEEecCcchhh-------hcccCCcee--eecccccccccCCCchhhhhhcchhHHHHHHHHh-ccCCEE
Q 016016 107 SALKIGADLSHVFCTKDAAPV-------IKSYSPELI--VHPILEESYNISGLEDEERRCISSKILAEVDKWM-ERFDCL 176 (396)
Q Consensus 107 aAlr~GaglVtv~t~~~~~~~-------i~~~~PE~~--~~~~~~~~~~~~~~~~~~~~~is~~~~~ev~~~~-~~~dal 176 (396)
.-+..|++.+.+.++...... |+...|+.. .-.+. +. ++...+. .-+|++
T Consensus 234 ~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~-----------------t~---~~a~~l~~aGad~v 293 (479)
T PRK07807 234 ALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVV-----------------TA---EGTRDLVEAGADIV 293 (479)
T ss_pred HHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccC-----------------CH---HHHHHHHHcCCCEE
Confidence 445569999999888764331 334555443 32221 11 2233332 368999
Q ss_pred EEcCCCCC----------CHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 177 VVGPGLGR----------DPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 177 vIG~Gl~~----------~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
.+|+|.|. ...++..+.+..+.+++.++|+|-|.
T Consensus 294 ~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~g 337 (479)
T PRK07807 294 KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADG 337 (479)
T ss_pred EECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecC
Confidence 99877731 11345667777776667788888775
No 115
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=37.24 E-value=1.9e+02 Score=29.47 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=57.1
Q ss_pred hhcCCCEEEEEecCcchh----hhcccCCceeeecccccccccCCCchhhhhhcchhHHHHHHHHhccCCEEEEcCCCCC
Q 016016 109 LKIGADLSHVFCTKDAAP----VIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGR 184 (396)
Q Consensus 109 lr~GaglVtv~t~~~~~~----~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~~~ev~~~~~~~dalvIG~Gl~~ 184 (396)
..+||.+|++.+|..... .|....|=.++..+.-+ -...+..+....|.+=||||-..
T Consensus 44 ~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd------------------~~lAl~a~~~g~dkiRINPGNig 105 (346)
T TIGR00612 44 EEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFD------------------YRLAALAMAKGVAKVRINPGNIG 105 (346)
T ss_pred HHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCC------------------cHHHHHHHHhccCeEEECCCCCC
Confidence 445999999999865432 13344443343332100 00234445567899999999887
Q ss_pred CHHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCC
Q 016016 185 DPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY 226 (396)
Q Consensus 185 ~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~ 226 (396)
+.+ .+..+++.++++++|+=+=.-...+- .++++++
T Consensus 106 ~~e---~v~~vv~~ak~~~ipIRIGVN~GSL~---~~~~~ky 141 (346)
T TIGR00612 106 FRE---RVRDVVEKARDHGKAMRIGVNHGSLE---RRLLEKY 141 (346)
T ss_pred CHH---HHHHHHHHHHHCCCCEEEecCCCCCc---HHHHHHc
Confidence 755 56667777888999987755444432 2455544
No 116
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=37.11 E-value=53 Score=31.39 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=50.5
Q ss_pred hHHHHHHHH--hccCCEEEEc-CCCCCC-------HHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCC---
Q 016016 161 KILAEVDKW--MERFDCLVVG-PGLGRD-------PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYP--- 227 (396)
Q Consensus 161 ~~~~ev~~~--~~~~dalvIG-~Gl~~~-------~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~--- 227 (396)
+..++++++ +.+..++.|| +|+... +.+.+.+.+.++.|.+.++|++|=..... ....+.++++.
T Consensus 72 ~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~--~~~l~il~~~~~~~ 149 (255)
T PF01026_consen 72 EDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAH--EELLEILKEYGPPN 149 (255)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHH--HHHHHHHHHTTGGT
T ss_pred HHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcH--HHHHHHHHhccccc
Confidence 344556666 7889999999 676541 35677888888888899999999665421 11112333221
Q ss_pred -Ce---eecCCHHHHHHHhc
Q 016016 228 -LA---VLTPNVNEYKRLVQ 243 (396)
Q Consensus 228 -~~---VITPN~~E~a~L~g 243 (396)
.. -.|++..++..+..
T Consensus 150 ~~~i~H~f~g~~~~~~~~~~ 169 (255)
T PF01026_consen 150 LRVIFHCFSGSPEEAKKFLD 169 (255)
T ss_dssp SEEEETT--S-HHHHHHHHH
T ss_pred eeEEEecCCCCHHHHHHHHh
Confidence 11 26788888888873
No 117
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=36.90 E-value=47 Score=28.59 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=26.0
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecC
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~ 122 (396)
..+++++|- +|++-.........|+.-|++...+
T Consensus 12 ~~~vlviGa----Gg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGA----GGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESS----SHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECC----HHHHHHHHHHHHHcCCCEEEEEECC
Confidence 458899987 7777777666667799988888754
No 118
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=36.40 E-value=2.5e+02 Score=28.81 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=59.9
Q ss_pred CCeEEEEecCCCCCCcHHHH--HHHHhhcCCCEEEEEecCcchhh-------hcccCCce--eeecccccccccCCCchh
Q 016016 85 AGKIAVIGGCREYTGAPYFA--AISALKIGADLSHVFCTKDAAPV-------IKSYSPEL--IVHPILEESYNISGLEDE 153 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilA--alaAlr~GaglVtv~t~~~~~~~-------i~~~~PE~--~~~~~~~~~~~~~~~~~~ 153 (396)
.+++.+--| ..-.-+.- .+-+...|++++.+.++...+.. ++...|+. +.-.+
T Consensus 96 ~~~~~vavG---~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV------------- 159 (346)
T PRK05096 96 LKHVMVSTG---TSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNV------------- 159 (346)
T ss_pred cceEEEEec---CCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecc-------------
Confidence 477777445 22232222 22333459999999999775542 33444543 33222
Q ss_pred hhhhcchhHHHHHHHHh-ccCCEEEEcCCCCCC----------HHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 154 ERRCISSKILAEVDKWM-ERFDCLVVGPGLGRD----------PYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 154 ~~~~is~~~~~ev~~~~-~~~dalvIG~Gl~~~----------~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
.+.+ .+++++ .-+|++.||+|-|.- ..++..+.+..+.+++.++|+|-|.-
T Consensus 160 ----~T~e---~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGG 221 (346)
T PRK05096 160 ----VTGE---MVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGG 221 (346)
T ss_pred ----cCHH---HHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCC
Confidence 2222 233333 378999998664421 12456677777777888999998863
No 119
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=35.54 E-value=64 Score=26.35 Aligned_cols=32 Identities=6% Similarity=0.237 Sum_probs=19.3
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 172 ~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
+.|+++|.+. +..-.+.+..++ +.+++++++-
T Consensus 62 ~~D~V~I~tp---~~~h~~~~~~~l----~~g~~v~~EK 93 (120)
T PF01408_consen 62 DVDAVIIATP---PSSHAEIAKKAL----EAGKHVLVEK 93 (120)
T ss_dssp TESEEEEESS---GGGHHHHHHHHH----HTTSEEEEES
T ss_pred cCCEEEEecC---CcchHHHHHHHH----HcCCEEEEEc
Confidence 7899999752 232333444443 5677887764
No 120
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=35.27 E-value=3.6e+02 Score=24.83 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=26.4
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcc
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA 124 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~ 124 (396)
.-+|+++|- +|-|-..+..-.+.|.+-+++.-...+
T Consensus 21 ~~~VlviG~----GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGA----GGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECC----CHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 447888875 666666677777789988888877643
No 121
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.21 E-value=1.4e+02 Score=31.54 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=22.8
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
..+|.++..||...+... ++.+++.++|++=|.
T Consensus 69 ~~~D~VV~SpGi~~~~p~-------~~~a~~~gi~v~~~i 101 (488)
T PRK03369 69 ADYALVVTSPGFRPTAPV-------LAAAAAAGVPIWGDV 101 (488)
T ss_pred hcCCEEEECCCCCCCCHH-------HHHHHHCCCcEeeHH
Confidence 567999999999876432 233456788888554
No 122
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=35.06 E-value=2.1e+02 Score=29.42 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=53.0
Q ss_pred hhcCCCEEEEEecCcchh----hhcccCCceeeecccccccccCCCchhhhhhcchhHHHHHHHHhccCCEEEEcCCCCC
Q 016016 109 LKIGADLSHVFCTKDAAP----VIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGR 184 (396)
Q Consensus 109 lr~GaglVtv~t~~~~~~----~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~~~ev~~~~~~~dalvIG~Gl~~ 184 (396)
..+||.+|++.++..... .|....|=.++..+. |.. + -.+..+-.-+|.+=||||-..
T Consensus 52 ~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIH--------Fd~--------~--lAl~a~~~G~~~iRINPGNig 113 (360)
T PRK00366 52 ARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIH--------FDY--------R--LALAAAEAGADALRINPGNIG 113 (360)
T ss_pred HHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecC--------CCH--------H--HHHHHHHhCCCEEEECCCCCC
Confidence 445999999999865432 244444444443322 100 0 123333345899999999875
Q ss_pred C-HHHHHHHHHHHHHhhcCCCCEEEecCcccc
Q 016016 185 D-PYLLECVSEIMKHARQSNVPIVIDGDGLFL 215 (396)
Q Consensus 185 ~-~~~~~~v~~~l~~a~~~~~PvVLDpdgl~l 215 (396)
+ .+ .+.++++.++++++|+=+=.-...+
T Consensus 114 ~~~~---~v~~vv~~ak~~~ipIRIGvN~GSL 142 (360)
T PRK00366 114 KRDE---RVREVVEAAKDYGIPIRIGVNAGSL 142 (360)
T ss_pred chHH---HHHHHHHHHHHCCCCEEEecCCccC
Confidence 5 43 5667778888999998775554444
No 123
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=34.97 E-value=2.5e+02 Score=30.23 Aligned_cols=37 Identities=32% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEec
Q 016016 80 KHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCT 121 (396)
Q Consensus 80 ~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~ 121 (396)
..+-...+|+|+|. +.+|++|...|.+.|+. |++...
T Consensus 160 aG~~pg~kVlViGa----G~iGL~Ai~~Ak~lGA~-V~a~D~ 196 (509)
T PRK09424 160 AGKVPPAKVLVIGA----GVAGLAAIGAAGSLGAI-VRAFDT 196 (509)
T ss_pred cCCcCCCEEEEECC----cHHHHHHHHHHHHCCCE-EEEEeC
Confidence 34555778999988 88999998888888994 665544
No 124
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=32.75 E-value=1.5e+02 Score=31.41 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=24.1
Q ss_pred HHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEe
Q 016016 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVID 209 (396)
Q Consensus 168 ~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLD 209 (396)
++...+|.+|++||+..+... + +.+++.++|++=|
T Consensus 65 ~~~~~~d~vV~SPGi~~~~p~---v----~~A~~~gi~i~~d 99 (448)
T COG0771 65 EDLAEFDLVVKSPGIPPTHPL---V----EAAKAAGIEIIGD 99 (448)
T ss_pred hccccCCEEEECCCCCCCCHH---H----HHHHHcCCcEEeH
Confidence 456789999999999976542 2 2334567777644
No 125
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=32.58 E-value=3.3e+02 Score=28.24 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=57.7
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhc-CCCEEEEEec---CcchhhhcccCCceeeecccccccccCCCchhhhhhcch
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKI-GADLSHVFCT---KDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISS 160 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~-GaglVtv~t~---~~~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~ 160 (396)
++.+.++.| .+.+++.|++..+-- |--++.+..- .+...+...+..+..+..... ...+..
T Consensus 55 ~~~~~ll~g---sGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~w------------g~~v~p 119 (383)
T COG0075 55 NGDVVLLSG---SGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEW------------GEAVDP 119 (383)
T ss_pred CCcEEEEcC---CcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCC------------CCCCCH
Confidence 668999988 577888887766555 4433333322 333444555555555443221 012333
Q ss_pred hHHHHHHHHhccCCEEEEc-----CCCCCCHHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 161 KILAEVDKWMERFDCLVVG-----PGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 161 ~~~~ev~~~~~~~dalvIG-----~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
+++++..+--.+++++.+= +|+..+ +.++.+.+++.+.-+|+|++
T Consensus 120 ~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp------l~~I~~~~k~~g~l~iVDaV 169 (383)
T COG0075 120 EEVEEALDKDPDIKAVAVVHNETSTGVLNP------LKEIAKAAKEHGALLIVDAV 169 (383)
T ss_pred HHHHHHHhcCCCccEEEEEeccCcccccCc------HHHHHHHHHHcCCEEEEEec
Confidence 3333332211256666653 666543 23344445677999999995
No 126
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=31.88 E-value=59 Score=33.09 Aligned_cols=106 Identities=16% Similarity=0.269 Sum_probs=59.4
Q ss_pred hHHHHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCC-EEEecCcccccccchhhhcCC-C-CeeecCCHHH
Q 016016 161 KILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVP-IVIDGDGLFLVTNSIDLVSGY-P-LAVLTPNVNE 237 (396)
Q Consensus 161 ~~~~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~P-vVLDpdgl~ll~~~~~ll~~~-~-~~VITPN~~E 237 (396)
.+++|+..|.++.++-+|...-+.++.. .+...++.++.++.- |++|..|--... ..|+.++ + ..|++|...+
T Consensus 181 aAiEQL~~w~er~gv~vI~~~~G~DpAa--VafDAi~~Akar~~DvvliDTAGRLhnk--~nLM~EL~KI~rV~~k~~~~ 256 (340)
T COG0552 181 AAIEQLEVWGERLGVPVISGKEGADPAA--VAFDAIQAAKARGIDVVLIDTAGRLHNK--KNLMDELKKIVRVIKKDDPD 256 (340)
T ss_pred HHHHHHHHHHHHhCCeEEccCCCCCcHH--HHHHHHHHHHHcCCCEEEEeCcccccCc--hhHHHHHHHHHHHhccccCC
Confidence 3458999999999998998435556543 556677777777764 566887643222 2232221 1 1355554432
Q ss_pred H--HHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEE
Q 016016 238 Y--KRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQ 273 (396)
Q Consensus 238 ~--a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvVll 273 (396)
+ ..|+..+ ....++..+.|+.+.+-.+..-+++
T Consensus 257 ap~e~llvlD---AttGqnal~QAk~F~eav~l~GiIl 291 (340)
T COG0552 257 APHEILLVLD---ATTGQNALSQAKIFNEAVGLDGIIL 291 (340)
T ss_pred CCceEEEEEE---cccChhHHHHHHHHHHhcCCceEEE
Confidence 1 0121111 0123678889999987655433333
No 127
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.74 E-value=1.8e+02 Score=29.88 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=22.8
Q ss_pred CeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecC
Q 016016 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (396)
Q Consensus 86 G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~ 122 (396)
.+++|+|+ ++.|.-.+...++.|+. |++....
T Consensus 6 k~v~iiG~----g~~G~~~A~~l~~~G~~-V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVGA----GVSGLALAKFLKKLGAK-VILTDEK 37 (450)
T ss_pred CEEEEECC----CHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 47888887 55777667777777985 6666554
No 128
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=31.34 E-value=3.7e+02 Score=24.59 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=53.6
Q ss_pred EEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchhh---hcccCCceeeecccccccccCCCchhhhhhcchhHHH
Q 016016 88 IAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPV---IKSYSPELIVHPILEESYNISGLEDEERRCISSKILA 164 (396)
Q Consensus 88 vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~~---i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~~~ 164 (396)
|+|+|+ .+.-|..+..++.. .---|++.+....... +....-+++...+ .+.+
T Consensus 1 I~V~Ga-tG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~--------------------~~~~ 56 (233)
T PF05368_consen 1 ILVTGA-TGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQALGAEVVEADY--------------------DDPE 56 (233)
T ss_dssp EEEETT-TSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHHHTTTEEEES-T--------------------T-HH
T ss_pred CEEECC-ccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhhcccceEeeccc--------------------CCHH
Confidence 466666 23344444444433 3345888887654332 2233334442221 1224
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcc
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL 213 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl 213 (396)
.+.+.++..|++.+.++.....+ .+....+++.+.+.+++.++ |...
T Consensus 57 ~l~~al~g~d~v~~~~~~~~~~~-~~~~~~li~Aa~~agVk~~v-~ss~ 103 (233)
T PF05368_consen 57 SLVAALKGVDAVFSVTPPSHPSE-LEQQKNLIDAAKAAGVKHFV-PSSF 103 (233)
T ss_dssp HHHHHHTTCSEEEEESSCSCCCH-HHHHHHHHHHHHHHT-SEEE-ESEE
T ss_pred HHHHHHcCCceEEeecCcchhhh-hhhhhhHHHhhhccccceEE-EEEe
Confidence 67777889999999877542222 33445566666677888777 5543
No 129
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=30.41 E-value=6.5e+02 Score=26.66 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=24.1
Q ss_pred CCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEec
Q 016016 80 KHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCT 121 (396)
Q Consensus 80 ~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~ 121 (396)
..+-..|++.+ ++.-+-....+..+.+-+..|+.++.+.++
T Consensus 209 a~~d~~g~l~V-~aai~~~~~~~e~a~~L~~agvdvivvD~a 249 (486)
T PRK05567 209 ACKDEQGRLRV-GAAVGVGADNEERAEALVEAGVDVLVVDTA 249 (486)
T ss_pred cccccCCCEEE-EeecccCcchHHHHHHHHHhCCCEEEEECC
Confidence 33444565554 443332234466666777779998877665
No 130
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=30.23 E-value=4.3e+02 Score=26.78 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=24.8
Q ss_pred CeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCc
Q 016016 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (396)
Q Consensus 86 G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~ 123 (396)
-+|+++|- +|-|-..+..-.++|.+-++++-...
T Consensus 29 ~~VlivG~----GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGA----GGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECC----CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47888876 66666666666777888888876654
No 131
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=30.17 E-value=1.4e+02 Score=28.87 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=50.1
Q ss_pred HHHHHHHHhcc-C-CEEEEc-CCCCCC------HHHHHHHHHHHHHhhcCCCCEEEecCcccccccchhhhcCC--C-C-
Q 016016 162 ILAEVDKWMER-F-DCLVVG-PGLGRD------PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY--P-L- 228 (396)
Q Consensus 162 ~~~ev~~~~~~-~-dalvIG-~Gl~~~------~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~--~-~- 228 (396)
.++++++++.. . .++.|| +|+..- ..+.+.+...++.|.+.++||+|=..... ..-.+.++.+ + .
T Consensus 77 ~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~--~~~~~il~~~~~~~~~ 154 (258)
T PRK11449 77 SLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--DKLAMHLKRHDLPRTG 154 (258)
T ss_pred HHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc--HHHHHHHHhcCCCCCe
Confidence 34566655532 2 588898 787621 24677888888989999999999775421 1111233322 1 1
Q ss_pred --eeecCCHHHHHHHhcc
Q 016016 229 --AVLTPNVNEYKRLVQK 244 (396)
Q Consensus 229 --~VITPN~~E~a~L~g~ 244 (396)
--.|++..++..+...
T Consensus 155 i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 155 VVHGFSGSLQQAERFVQL 172 (258)
T ss_pred EEEcCCCCHHHHHHHHHC
Confidence 1258888888888764
No 132
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=29.99 E-value=1.7e+02 Score=29.91 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEec
Q 016016 84 QAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCT 121 (396)
Q Consensus 84 ~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~ 121 (396)
..++++|+|. ++++..++..+.+.|+. |++...
T Consensus 166 ~~~~VlViGa----G~vG~~aa~~a~~lGa~-V~v~d~ 198 (370)
T TIGR00518 166 EPGDVTIIGG----GVVGTNAAKMANGLGAT-VTILDI 198 (370)
T ss_pred CCceEEEEcC----CHHHHHHHHHHHHCCCe-EEEEEC
Confidence 4567888865 78888888888888985 666644
No 133
>PF11392 DUF2877: Protein of unknown function (DUF2877); InterPro: IPR021530 This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.
Probab=29.64 E-value=1.7e+02 Score=24.57 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=16.4
Q ss_pred CCchH-HHHHHHHHHHhccCChH
Q 016016 299 GGQGD-ILSGSVAVFLSWARAKG 320 (396)
Q Consensus 299 ~GTGD-vLAGiIAa~LA~g~~l~ 320 (396)
+=+|| +|.|+++.+...+.+.+
T Consensus 9 TPSGDD~L~G~la~l~~~~~~~~ 31 (110)
T PF11392_consen 9 TPSGDDFLVGMLAALYLGGHPLQ 31 (110)
T ss_pred CCchHHHHHHHHHHHHHcCCchH
Confidence 44677 99999988877775443
No 134
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.58 E-value=1.2e+02 Score=31.31 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=22.2
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 172 ~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
.+|.+|.+||+..+.. . ++.+++.++|++=++.
T Consensus 68 ~~d~vV~s~gi~~~~~---~----~~~a~~~~i~v~~~~e 100 (447)
T PRK02472 68 DFDLMVKNPGIPYTNP---M----VEKALEKGIPIITEVE 100 (447)
T ss_pred cCCEEEECCCCCCCCH---H----HHHHHHCCCcEEeHHH
Confidence 3899999999986543 1 2334467888875553
No 135
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=29.49 E-value=90 Score=31.29 Aligned_cols=42 Identities=29% Similarity=0.553 Sum_probs=27.2
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCC-CEEEecCcccccc
Q 016016 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV-PIVIDGDGLFLVT 217 (396)
Q Consensus 172 ~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~-PvVLDpdgl~ll~ 217 (396)
..|++|.|.|++.. +.-+.+.++.. ..++ -+.+||.+-.++.
T Consensus 169 ~~d~fVagvGTGGT---itGvar~Lk~~-~p~i~iv~vdP~~S~~~~ 211 (300)
T COG0031 169 KVDAFVAGVGTGGT---ITGVARYLKER-NPNVRIVAVDPEGSVLLS 211 (300)
T ss_pred CCCEEEEeCCcchh---HHHHHHHHHhh-CCCcEEEEECCCCCcccC
Confidence 48999999998754 33455556543 2334 3678998765553
No 136
>PTZ00300 pyruvate kinase; Provisional
Probab=29.05 E-value=1.1e+02 Score=32.49 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=36.7
Q ss_pred hHHHHHHHHhccCCEEEEcCCCCC----CHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 161 KILAEVDKWMERFDCLVVGPGLGR----DPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 161 ~~~~ev~~~~~~~dalvIG~Gl~~----~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
+.++.++++++..|++.|++|=+. .++......++++.+++.++|+|+=.
T Consensus 199 eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~AT 252 (454)
T PTZ00300 199 QGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICAT 252 (454)
T ss_pred HHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 455678888889999999965331 23444556677888899999999844
No 137
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.69 E-value=4.2e+02 Score=27.70 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=26.8
Q ss_pred CCCCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCc
Q 016016 78 PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (396)
Q Consensus 78 ~~~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~ 123 (396)
+++-|-..|++++.+.. +-....+.-..+....|+++|.+.+...
T Consensus 132 ~~a~~d~~~~l~v~aav-g~~~~~~~~v~~lv~aGvDvI~iD~a~g 176 (404)
T PRK06843 132 PNACKDLNNKLRVGAAV-SIDIDTIERVEELVKAHVDILVIDSAHG 176 (404)
T ss_pred chhhhhhhcCeEEEEEE-eCCHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 45555566776664442 1222233444566677999999888654
No 138
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=28.68 E-value=4.5e+02 Score=24.18 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=26.0
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcc
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA 124 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~ 124 (396)
.-+|+++|- +|=+...+..-.++|.+-+++.-+..+
T Consensus 21 ~s~VlIiG~----gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGL----KGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcC----CHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 457888853 666666666777889999998876543
No 139
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.47 E-value=1.9e+02 Score=29.94 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=24.1
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCc
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDG 212 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdg 212 (396)
..+|.+|+.||+..+.. .+ +.+++.++|++=+++-
T Consensus 66 ~~~d~vv~spgi~~~~p---~~----~~a~~~~i~v~~~~~~ 100 (445)
T PRK04308 66 NGFDILALSPGISERQP---DI----EAFKQNGGRVLGDIEL 100 (445)
T ss_pred hCCCEEEECCCCCCCCH---HH----HHHHHcCCcEEEhHHH
Confidence 57899999999986543 22 3345678888866643
No 140
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=28.46 E-value=29 Score=27.82 Aligned_cols=31 Identities=39% Similarity=0.418 Sum_probs=15.8
Q ss_pred eEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEE
Q 016016 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVF 119 (396)
Q Consensus 87 ~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~ 119 (396)
+|||||+|.+|+=|.-.+ +|++.|++-+-+.
T Consensus 41 ~VLViGaStGyGLAsRIa--~aFg~gA~TiGV~ 71 (78)
T PF12242_consen 41 KVLVIGASTGYGLASRIA--AAFGAGADTIGVS 71 (78)
T ss_dssp EEEEES-SSHHHHHHHHH--HHHCC--EEEEEE
T ss_pred eEEEEecCCcccHHHHHH--HHhcCCCCEEEEe
Confidence 799999976555333222 3456666544443
No 141
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=27.71 E-value=4.4e+02 Score=23.50 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=20.6
Q ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCE-EEecCcc
Q 016016 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPI-VIDGDGL 213 (396)
Q Consensus 169 ~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~Pv-VLDpdgl 213 (396)
++..+|++++=|| ..-+++.+.+++ ..++|+ ++.-+|.
T Consensus 88 m~~~sda~IvlpG---G~GTL~E~~~a~----~~~kpv~~l~~~g~ 126 (159)
T TIGR00725 88 LVRSADVVVSVGG---GYGTAIEILGAY----ALGGPVVVLRGTGG 126 (159)
T ss_pred HHHHCCEEEEcCC---chhHHHHHHHHH----HcCCCEEEEECCCc
Confidence 3456788888665 222333343333 257786 5555543
No 142
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=27.17 E-value=21 Score=36.53 Aligned_cols=25 Identities=36% Similarity=0.684 Sum_probs=16.8
Q ss_pred hccCceeeEEEeeeecCccceeehh
Q 016016 362 ESNGVGLHCWICSIEKGGISCFQRQ 386 (396)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (396)
=|---|.|||+|.-+---.+--||.
T Consensus 163 fSGRRGvHCWVcD~~Ar~L~~~qR~ 187 (412)
T KOG2851|consen 163 FSGRRGVHCWVCDKKARMLSDRQRS 187 (412)
T ss_pred EecCCceeeeeccHHHhhccchHHH
Confidence 4556789999998665555555543
No 143
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.17 E-value=2.7e+02 Score=27.63 Aligned_cols=87 Identities=28% Similarity=0.257 Sum_probs=49.6
Q ss_pred CCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCcchhhh-----cccCCc-eeeecccccccccCCCchhhhhhc
Q 016016 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVI-----KSYSPE-LIVHPILEESYNISGLEDEERRCI 158 (396)
Q Consensus 85 ~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~~~~~i-----~~~~PE-~~~~~~~~~~~~~~~~~~~~~~~i 158 (396)
.|+|.+|.|..+ |=|-.-+..-.+.|+.++-+.-..+--..+ ....++ +.+.+.. .. + ..-
T Consensus 11 ~~kvVvITGASs--GIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~D-----vs---~---~~~ 77 (282)
T KOG1205|consen 11 AGKVVLITGASS--GIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLD-----VS---D---EES 77 (282)
T ss_pred CCCEEEEeCCCc--HHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCc-----cC---C---HHH
Confidence 688999999644 444444566667788877777655443433 345555 4443321 00 1 011
Q ss_pred chhHHHHHHHHhccCCEEEEcCCCCC
Q 016016 159 SSKILAEVDKWMERFDCLVVGPGLGR 184 (396)
Q Consensus 159 s~~~~~ev~~~~~~~dalvIG~Gl~~ 184 (396)
.++.++++..-+.+.|.++-|-|+..
T Consensus 78 ~~~~~~~~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 78 VKKFVEWAIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred HHHHHHHHHHhcCCCCEEEecCcccc
Confidence 11222344445578999999988875
No 144
>PRK05826 pyruvate kinase; Provisional
Probab=26.52 E-value=1.3e+02 Score=31.89 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=36.8
Q ss_pred hHHHHHHHHhccCCEEEEcCCCC----CCHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 161 KILAEVDKWMERFDCLVVGPGLG----RDPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 161 ~~~~ev~~~~~~~dalvIG~Gl~----~~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
+.++.++++++..|++.||+|=+ ..++......++++.+++.++|+++-.
T Consensus 226 eav~nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~AT 279 (465)
T PRK05826 226 EAVDNIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITAT 279 (465)
T ss_pred HHHHhHHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34566777777799999997622 134555667788888999999999864
No 145
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=26.37 E-value=73 Score=31.25 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.7
Q ss_pred CCCCchH-HHHHHHHHHHhccCChHHHHHH
Q 016016 297 RCGGQGD-ILSGSVAVFLSWARAKGKATTR 325 (396)
Q Consensus 297 ~t~GTGD-vLAGiIAa~LA~g~~l~~A~~~ 325 (396)
.+.|.|| .-||+|-|.+.+++++.+|+.+
T Consensus 255 D~lg~~DtF~A~vIyA~lk~~r~l~eAvdf 284 (308)
T KOG2947|consen 255 DTLGAGDTFNAGVIYALLKQGRSLAEAVDF 284 (308)
T ss_pred eeccCCCcchHHHHHHHHHhhhhHHHHHHH
Confidence 5899999 6689999999999999998874
No 146
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=26.29 E-value=5.3e+02 Score=24.60 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCc
Q 016016 84 QAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (396)
Q Consensus 84 ~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~ 123 (396)
..-+|+++|- +|-|-..+..-.++|.+-++++-...
T Consensus 31 ~~~~VliiG~----GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGL----GGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECC----CHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3458899865 45555555555666888888775543
No 147
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=26.22 E-value=2.7e+02 Score=30.04 Aligned_cols=37 Identities=32% Similarity=0.247 Sum_probs=28.2
Q ss_pred CCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecC
Q 016016 81 HKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (396)
Q Consensus 81 hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~ 122 (396)
.+...-+++|+|. +.+|+.+...+.+.|+. |+++...
T Consensus 160 g~vp~akVlViGa----G~iGl~Aa~~ak~lGA~-V~v~d~~ 196 (511)
T TIGR00561 160 GKVPPAKVLVIGA----GVAGLAAIGAANSLGAI-VRAFDTR 196 (511)
T ss_pred CCCCCCEEEEECC----CHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 3445578999987 88889988888888987 6666553
No 148
>PLN02623 pyruvate kinase
Probab=26.15 E-value=1.4e+02 Score=32.62 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=35.4
Q ss_pred hHHHHHHHHhccCCEEEEcCCCCC----CHHHHHHHHHHHHHhhcCCCCEEE
Q 016016 161 KILAEVDKWMERFDCLVVGPGLGR----DPYLLECVSEIMKHARQSNVPIVI 208 (396)
Q Consensus 161 ~~~~ev~~~~~~~dalvIG~Gl~~----~~~~~~~v~~~l~~a~~~~~PvVL 208 (396)
+.++.++++++..|++.||+|=+. -++......++++.+++.++|+++
T Consensus 330 eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 330 DSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred HHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEE
Confidence 445677778889999999976221 145556777888888999999985
No 149
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.91 E-value=1.9e+02 Score=30.50 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=35.5
Q ss_pred HHHhhCCCCC--CCCCCCCCCeEEEEecCCCCCCcHHHHHHHHhhcCC-CEEEEEe
Q 016016 68 VMREITPVLD--PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGA-DLSHVFC 120 (396)
Q Consensus 68 ~~~~~lp~r~--~~~hKg~~G~vlvIgGSd~~~GA~ilAalaAlr~Ga-glVtv~t 120 (396)
++...+|.+. ...+-.+.++|++++|...-+|+++.++.---..|. -+|+...
T Consensus 247 ~v~~~lgg~~RL~srn~~~~P~V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 247 AVATLLGGRKRLMSRNSHQWPLVAILCGPGNNGGDGLVCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred HHHHHcCccccccccccCCCceEEEEeCCCCccchhHHHHHHHHHcCceeEEEeec
Confidence 3445677665 444555678899999999999999987765545563 3344433
No 150
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.78 E-value=2e+02 Score=30.25 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=22.1
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
+..+|.++++||+..+.. .+ +.+++.++|++=|.
T Consensus 72 ~~~~d~vV~Spgi~~~~p---~~----~~a~~~gi~v~~~~ 105 (473)
T PRK00141 72 LDSFSLVVTSPGWRPDSP---LL----VDAQSQGLEVIGDV 105 (473)
T ss_pred hcCCCEEEeCCCCCCCCH---HH----HHHHHCCCceeeHH
Confidence 357899999999986533 12 22345677777444
No 151
>PRK09206 pyruvate kinase; Provisional
Probab=25.68 E-value=1.4e+02 Score=31.86 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=36.1
Q ss_pred hHHHHHHHHhccCCEEEEcCCCCC----CHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 161 KILAEVDKWMERFDCLVVGPGLGR----DPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 161 ~~~~ev~~~~~~~dalvIG~Gl~~----~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
+.++.+++++...|.+.|++|=+. .++......++++.+++.++|+|+=.
T Consensus 225 eav~nldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~AT 278 (470)
T PRK09206 225 EGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITAT 278 (470)
T ss_pred HHHHhHHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 345667777788999999975331 24445566778888899999999844
No 152
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=25.43 E-value=1.9e+02 Score=23.51 Aligned_cols=49 Identities=16% Similarity=0.469 Sum_probs=21.4
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCC-EEEecCcccccc
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVP-IVIDGDGLFLVT 217 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~P-vVLDpdgl~ll~ 217 (396)
.+.+.+..+|.++.= ....-.++.+.-+++. +..+.+ +|+|.+|-..++
T Consensus 4 ~~~~~~~~~d~~I~i---~A~GivvR~iap~l~d-K~~DPaVvvvde~g~~vIp 53 (84)
T PF11760_consen 4 LLRELFRRYDAIIFI---MAAGIVVRAIAPLLKD-KDTDPAVVVVDEDGRFVIP 53 (84)
T ss_dssp -HHHHCCC-SEEEEE---S-HHHHHHHHHHH----TTT--EEEEE-TT--EEEE
T ss_pred HHHHHHcCCCeEEEE---eCcHHHHHHhChhhcc-cCCCCCEEEEeCCCCEEEE
Confidence 355666788888763 2233344555555542 122322 678998876654
No 153
>PRK06487 glycerate dehydrogenase; Provisional
Probab=24.55 E-value=6.9e+02 Score=24.82 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=30.0
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCC-CEEEecCcccccccchhhhc-CCCCeeecCCHH
Q 016016 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV-PIVIDGDGLFLVTNSIDLVS-GYPLAVLTPNVN 236 (396)
Q Consensus 172 ~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~-PvVLDpdgl~ll~~~~~ll~-~~~~~VITPN~~ 236 (396)
+.++++||.|=|.--. .+.+.++++ +..+ -..||.--..-+.....+++ ..+..++|||.+
T Consensus 224 k~ga~lIN~aRG~vVd-e~AL~~AL~---~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia 286 (317)
T PRK06487 224 KPGALLINTARGGLVD-EQALADALR---SGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSA 286 (317)
T ss_pred CCCeEEEECCCccccC-HHHHHHHHH---cCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccc
Confidence 5688999876553111 123444442 2222 24677632211111112333 246789999986
No 154
>PRK06354 pyruvate kinase; Provisional
Probab=24.46 E-value=1.5e+02 Score=32.58 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=35.7
Q ss_pred hHHHHHHHHhccCCEEEEcCCCCC----CHHHHHHHHHHHHHhhcCCCCEEE
Q 016016 161 KILAEVDKWMERFDCLVVGPGLGR----DPYLLECVSEIMKHARQSNVPIVI 208 (396)
Q Consensus 161 ~~~~ev~~~~~~~dalvIG~Gl~~----~~~~~~~v~~~l~~a~~~~~PvVL 208 (396)
+.++.++++++..|.+.|++|=+. .++......++++.+++.++|+|+
T Consensus 231 eav~nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 231 EAIDNIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred HHHHhHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 445677777788999999975331 344455677788889999999997
No 155
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=23.73 E-value=3.6e+02 Score=27.63 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=54.8
Q ss_pred CeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCc-chhhhcccCCceeeecccccccccCCCchhhhhhcchhHHH
Q 016016 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD-AAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILA 164 (396)
Q Consensus 86 G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~-~~~~i~~~~PE~~~~~~~~~~~~~~~~~~~~~~~is~~~~~ 164 (396)
.+|+|+|+| +|+|.-++.-+. -+-..- +.+.+..+ .-..+....|.+--...+. ++..+.+
T Consensus 3 ~kV~IvGas-GYtG~EL~rlL~-~Hp~ve-~~~~ss~~~~g~~~~~~~p~l~g~~~l~---------------~~~~~~~ 64 (349)
T COG0002 3 IKVGIVGAS-GYTGLELLRLLA-GHPDVE-LILISSRERAGKPVSDVHPNLRGLVDLP---------------FQTIDPE 64 (349)
T ss_pred ceEEEEcCC-CCcHHHHHHHHh-cCCCeE-EEEeechhhcCCchHHhCcccccccccc---------------cccCChh
Confidence 478899885 899988876443 222333 45555444 3334555555443110000 0000011
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcccccc
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVT 217 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll~ 217 (396)
.+ ..+.+|++.+. ++ +....+.+.+++ +.+++ |+|-++..-+.
T Consensus 65 ~~--~~~~~DvvFla--lP-hg~s~~~v~~l~----~~g~~-VIDLSadfR~~ 107 (349)
T COG0002 65 KI--ELDECDVVFLA--LP-HGVSAELVPELL----EAGCK-VIDLSADFRLK 107 (349)
T ss_pred hh--hcccCCEEEEe--cC-chhHHHHHHHHH----hCCCe-EEECCcccccC
Confidence 22 23568999995 44 444445555554 34544 99999876655
No 156
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.69 E-value=4.5e+02 Score=27.09 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=22.5
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
..+|.+|++||+..+.. .+ +.+++.++|++=++.
T Consensus 67 ~~~d~vV~sp~i~~~~p---~~----~~a~~~~i~i~~~~e 100 (448)
T PRK03803 67 VQASEIIISPGLALDTP---AL----RAAAAMGIEVIGDIE 100 (448)
T ss_pred cCCCEEEECCCCCCCCH---HH----HHHHHCCCcEEEHHH
Confidence 56899999999986533 12 233456777775553
No 157
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.68 E-value=6.5e+02 Score=25.52 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=26.8
Q ss_pred CCCCeEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecC
Q 016016 83 GQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (396)
Q Consensus 83 g~~G~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~ 122 (396)
-..-+|+++| .+|.+-..+..-.+.|.+-++++-..
T Consensus 133 l~~~~VlvvG----~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIG----AGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEEC----CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3445788884 37777777777788899888888765
No 158
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=23.64 E-value=1.6e+02 Score=28.53 Aligned_cols=42 Identities=26% Similarity=0.652 Sum_probs=28.1
Q ss_pred HHHHHHh-ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEE-ecC
Q 016016 164 AEVDKWM-ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVI-DGD 211 (396)
Q Consensus 164 ~ev~~~~-~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVL-Dpd 211 (396)
++++.++ ...|+++|+|. +.. .+...++++.+.++|||. |.+
T Consensus 82 ~~i~~~ia~~~daIiv~~~---d~~---~~~~~v~~a~~aGIpVv~~d~~ 125 (322)
T COG1879 82 AQIEDLIAQGVDAIIINPV---DPD---ALTPAVKKAKAAGIPVVTVDSD 125 (322)
T ss_pred HHHHHHHHcCCCEEEEcCC---Chh---hhHHHHHHHHHCCCcEEEEecC
Confidence 4555543 68999999872 332 455666777888999765 553
No 159
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=23.43 E-value=3.7e+02 Score=27.46 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=18.5
Q ss_pred eEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecC
Q 016016 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (396)
Q Consensus 87 ~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~ 122 (396)
+||++|| ++.+..-+.++.++|- .+++.+..
T Consensus 2 kiliiG~----G~~~~~l~~~~~~~~~-~~~~~~~~ 32 (423)
T TIGR00877 2 KVLVIGN----GGREHALAWKLAQSPL-VKYVYVAP 32 (423)
T ss_pred EEEEECC----ChHHHHHHHHHHhCCC-ccEEEEEC
Confidence 6899999 4445555566666653 23444443
No 160
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.28 E-value=3.2e+02 Score=25.39 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=28.7
Q ss_pred HHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEE
Q 016016 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVI 208 (396)
Q Consensus 164 ~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVL 208 (396)
.++.....+-|++++=.+-|.++. +.++++.+++.+.|+|.
T Consensus 101 ~ql~~~~~~gDvli~iS~SG~s~~----v~~a~~~Ak~~G~~vI~ 141 (196)
T PRK10886 101 KQVRALGHAGDVLLAISTRGNSRD----IVKAVEAAVTRDMTIVA 141 (196)
T ss_pred HHHHHcCCCCCEEEEEeCCCCCHH----HHHHHHHHHHCCCEEEE
Confidence 467777778888887665665544 44556677888998775
No 161
>PRK10867 signal recognition particle protein; Provisional
Probab=23.13 E-value=7.5e+02 Score=26.04 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHhhhhccC
Q 016016 347 CLATYSFLMRLLQSDESNG 365 (396)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~ 365 (396)
++.-|+-+..+|...|+..
T Consensus 367 ~~~~~~~ii~SMt~~Er~~ 385 (433)
T PRK10867 367 ELKRIEAIINSMTPKERAN 385 (433)
T ss_pred HHHHHHHHHHcCCHHHHhC
Confidence 5555666666666666443
No 162
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=22.88 E-value=1.1e+02 Score=29.37 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=24.8
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCccccc
Q 016016 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLV 216 (396)
Q Consensus 171 ~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl~ll 216 (396)
...|++.||- ...+ .+.+.+..+++.. .++|+||=|.....+
T Consensus 31 ~gtDai~VGG-S~~~-~~~d~vv~~ik~~--~~lPvilfPg~~~~v 72 (230)
T PF01884_consen 31 SGTDAIIVGG-SDTG-VTLDNVVALIKRV--TDLPVILFPGSPSQV 72 (230)
T ss_dssp TT-SEEEEE--STHC-HHHHHHHHHHHHH--SSS-EEEETSTCCG-
T ss_pred cCCCEEEECC-CCCc-cchHHHHHHHHhc--CCCCEEEeCCChhhc
Confidence 5789999984 3323 3344555555544 789999999655433
No 163
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=22.76 E-value=5e+02 Score=25.09 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=23.0
Q ss_pred HHHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 164 ~ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
+++.+++..+|.++...|. + +.+++ ..++|+|+=|.
T Consensus 233 ~~m~~lm~~aDl~Is~~G~-T-------~~E~~----a~g~P~i~i~~ 268 (279)
T TIGR03590 233 ENMAELMNEADLAIGAAGS-T-------SWERC----CLGLPSLAICL 268 (279)
T ss_pred HHHHHHHHHCCEEEECCch-H-------HHHHH----HcCCCEEEEEe
Confidence 4677778899999987762 2 12222 25788776554
No 164
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=22.66 E-value=2.8e+02 Score=26.57 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeE
Q 016016 191 CVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVT 270 (396)
Q Consensus 191 ~v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vv 270 (396)
.....++.+++.|+.+-||=-|.+..+. +.++++++++||=...-+..+.... ......+..-.+++++|..
T Consensus 137 ~~~~~l~~L~~~G~~ialDDFGtG~ssl--~~L~~l~~d~iKID~~fi~~i~~~~-----~~~~iv~~iv~la~~l~~~- 208 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSL--SYLKRLPPDILKIDRSFVRDLETDA-----RDQAIVRAIVALAHKLGLT- 208 (256)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHH--HHHhhCCCCeEEECHHHHhhcccCc-----chHHHHHHHHHHHHHCCCE-
Confidence 4556667778899999999988876543 3566688899998888777764321 1234567778888889875
Q ss_pred EEEcCCc
Q 016016 271 ILQKGKS 277 (396)
Q Consensus 271 VllKG~~ 277 (396)
|+.-|..
T Consensus 209 vvaEGVE 215 (256)
T COG2200 209 VVAEGVE 215 (256)
T ss_pred EEEeecC
Confidence 4556754
No 165
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=22.40 E-value=7.4e+02 Score=24.40 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=18.4
Q ss_pred cchhHHHHHHHHhccCCEEEEcCCCC
Q 016016 158 ISSKILAEVDKWMERFDCLVVGPGLG 183 (396)
Q Consensus 158 is~~~~~ev~~~~~~~dalvIG~Gl~ 183 (396)
..++..+++.+.++.+|.+.|=-||+
T Consensus 70 ~a~~~~~~I~~~l~~~d~v~i~aglG 95 (304)
T cd02201 70 AAEESREEIKEALEGADMVFITAGMG 95 (304)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeccC
Confidence 34455667888888999988864444
No 166
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=22.23 E-value=5.4e+02 Score=26.87 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=29.6
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecCcc
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL 213 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpdgl 213 (396)
.+.+..+++|.+++.-|++.... +...+.+..+ .+.|+++|+...
T Consensus 52 ~l~~a~~~~DlVIttGGlgpt~d--D~t~eava~~--~g~~l~~~~~~~ 96 (413)
T TIGR00200 52 IIRIASERADVLIFNGGLGPTSD--DLTAETIATA--KGEPLVLNEAWL 96 (413)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCc--ccHHHHHHHH--hCCCcEECHHHH
Confidence 45555678999999888776432 3444444333 578999999644
No 167
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.21 E-value=7.2e+02 Score=24.06 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=13.4
Q ss_pred eEEEEecCCCCCCcHHHHHHHHhhcCCC
Q 016016 87 KIAVIGGCREYTGAPYFAAISALKIGAD 114 (396)
Q Consensus 87 ~vlvIgGSd~~~GA~ilAalaAlr~Gag 114 (396)
+++++|| +|.+-.-+..-...|..
T Consensus 2 ~ILvlGG----T~egr~la~~L~~~g~~ 25 (256)
T TIGR00715 2 TVLLMGG----TVDSRAIAKGLIAQGIE 25 (256)
T ss_pred eEEEEec----hHHHHHHHHHHHhCCCe
Confidence 6899999 44444333333344643
No 168
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=22.08 E-value=1.9e+02 Score=31.57 Aligned_cols=33 Identities=30% Similarity=0.604 Sum_probs=22.1
Q ss_pred cCCEEEEcCCCCCC--HHHHHHHHHHHHHhhcCCCCE
Q 016016 172 RFDCLVVGPGLGRD--PYLLECVSEIMKHARQSNVPI 206 (396)
Q Consensus 172 ~~dalvIG~Gl~~~--~~~~~~v~~~l~~a~~~~~Pv 206 (396)
.+|++|||||-|.. ++-+-++.++.+.+ +.+|+
T Consensus 64 ~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~--~~iPi 98 (767)
T KOG1224|consen 64 AFDAIVVGPGPGSPMCAADIGICLRLLLEC--RDIPI 98 (767)
T ss_pred ccceEEecCCCCCCCcHHHHHHHHHHHHhc--CCCce
Confidence 58999999998865 45455566666544 34554
No 169
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=21.59 E-value=7.5e+02 Score=24.94 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=24.1
Q ss_pred HHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEec
Q 016016 166 VDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDG 210 (396)
Q Consensus 166 v~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDp 210 (396)
+.++++.+|.++... .+.++...+.++ +.+.++|+|.=.
T Consensus 110 ~~~~~~~~DlVid~~---Dn~~~r~~ln~~---~~~~~iP~i~~~ 148 (339)
T PRK07688 110 LEELVTGVDLIIDAT---DNFETRFIVNDA---AQKYGIPWIYGA 148 (339)
T ss_pred HHHHHcCCCEEEEcC---CCHHHHHHHHHH---HHHhCCCEEEEe
Confidence 455678899988854 244443344433 456789988644
No 170
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=21.48 E-value=1e+02 Score=30.05 Aligned_cols=28 Identities=36% Similarity=0.934 Sum_probs=17.2
Q ss_pred EcCCCCC-CHHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 178 VGPGLGR-DPYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 178 IG~Gl~~-~~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
||.|+|. +.. .+..+++ +.++|+|+|+-
T Consensus 162 IGSg~G~~n~~---~l~iiie---~a~VPviVDAG 190 (262)
T COG2022 162 IGSGLGLQNPY---NLEIIIE---EADVPVIVDAG 190 (262)
T ss_pred ccCCcCcCCHH---HHHHHHH---hCCCCEEEeCC
Confidence 5566664 443 3333443 34899999995
No 171
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.08 E-value=95 Score=25.81 Aligned_cols=44 Identities=9% Similarity=0.282 Sum_probs=26.2
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCE-EEecCccc
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPI-VIDGDGLF 214 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~Pv-VLDpdgl~ 214 (396)
++.+..+++|+++++|-+ ....+.+. +.+...++|+ ++|+...+
T Consensus 40 e~~~~~~~~Dvill~PQv---~~~~~~i~---~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 40 SHYDMIPDYDLVILAPQM---ASYYDELK---KDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHhccCCCEEEEcChH---HHHHHHHH---HHhhhcCCCEEEeCHHHHh
Confidence 455566789999998733 22222333 3344567886 56775443
No 172
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=20.98 E-value=2.3e+02 Score=26.04 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=32.9
Q ss_pred HHHHHHHhccCCEEEEc-CCCCCC------HHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 163 LAEVDKWMERFDCLVVG-PGLGRD------PYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 163 ~~ev~~~~~~~dalvIG-~Gl~~~------~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
++++++++....+..|| .|+... +...+.+..+++.+.+.++||++=..
T Consensus 74 ~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~ 129 (251)
T cd01310 74 LDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSR 129 (251)
T ss_pred HHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 45677776666677775 455321 13346677788888889999999764
No 173
>PRK08328 hypothetical protein; Provisional
Probab=20.86 E-value=7.1e+02 Score=23.45 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=24.2
Q ss_pred eEEEEecCCCCCCcHHHHHHHHhhcCCCEEEEEecCc
Q 016016 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (396)
Q Consensus 87 ~vlvIgGSd~~~GA~ilAalaAlr~GaglVtv~t~~~ 123 (396)
+|+++|- +|.|-..+..-.+.|.+-+++.-...
T Consensus 29 ~VlIiG~----GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 29 KVAVVGV----GGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred cEEEECC----CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 6888875 66666666666778999888886543
No 174
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.30 E-value=3.9e+02 Score=28.03 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=23.3
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 170 ~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
+..+|.+|++||+..+... + +.+++.++|++=+..
T Consensus 67 ~~~~d~vV~SpgI~~~~p~---~----~~a~~~~i~i~~~~e 101 (468)
T PRK04690 67 LAAFDVVVKSPGISPYRPE---A----LAAAARGTPFIGGTA 101 (468)
T ss_pred ccCCCEEEECCCCCCCCHH---H----HHHHHcCCcEEEHHH
Confidence 3578999999999876432 2 233456778775443
No 175
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.24 E-value=2.8e+02 Score=25.09 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCCEEEecCcccccccchhhhcCCCCeeecCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEE
Q 016016 192 VSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTI 271 (396)
Q Consensus 192 v~~~l~~a~~~~~PvVLDpdgl~ll~~~~~ll~~~~~~VITPN~~E~a~L~g~~~~~~~~~~d~~~~a~~La~~~g~vvV 271 (396)
+...++.+++.|+.+.||-.|...... +.+..++++.|+=+...+..+.... ......+....+++.++. .|
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~--~~l~~~~~d~iKld~~~~~~~~~~~-----~~~~~l~~l~~~~~~~~~-~v 205 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSL--SYLKRLPVDYLKIDRSFVRDIETDP-----EDRAIVRAIIALAHSLGL-KV 205 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhH--HHHHhCCCCEEEECHHHHHhHhcCh-----hhHHHHHHHHHHHHHCCC-eE
Confidence 455666677889999999877654432 3444467888888888777765321 123455666777777776 45
Q ss_pred EEcCCc
Q 016016 272 LQKGKS 277 (396)
Q Consensus 272 llKG~~ 277 (396)
+++|..
T Consensus 206 ia~gVe 211 (240)
T cd01948 206 VAEGVE 211 (240)
T ss_pred EEEecC
Confidence 678854
No 176
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.11 E-value=6e+02 Score=25.48 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=23.7
Q ss_pred HHHHHhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEecC
Q 016016 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (396)
Q Consensus 165 ev~~~~~~~dalvIG~Gl~~~~~~~~~v~~~l~~a~~~~~PvVLDpd 211 (396)
++.+++..+|+++.-.|..+- .+++ ..++|.|+=|.
T Consensus 245 ~m~~~~~~adlvIsr~G~~t~-------~E~~----~~g~P~I~iP~ 280 (352)
T PRK12446 245 ELPDILAITDFVISRAGSNAI-------FEFL----TLQKPMLLIPL 280 (352)
T ss_pred hHHHHHHhCCEEEECCChhHH-------HHHH----HcCCCEEEEcC
Confidence 456677889998888776432 2222 25788877664
Done!