RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016016
(396 letters)
>gnl|CDD|238576 cd01171, YXKO-related, B.subtilis YXKO protein of unknown function
and related proteins. Based on the conservation of the
ATP binding site, the substrate binding site and the
Mg2+binding site and structural homology this group is a
member of the ribokinase-like superfamily.
Length = 254
Score = 241 bits (617), Expect = 4e-78
Identities = 92/246 (37%), Positives = 132/246 (53%), Gaps = 26/246 (10%)
Query: 78 PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIV 137
P HKG G++ VIGG R YTGA Y AA++AL+ GA L V +AA VIKSYSPEL+V
Sbjct: 1 PDSHKGSRGRVLVIGGSRGYTGAAYLAALAALRAGAGLVTVATPPEAAAVIKSYSPELMV 60
Query: 138 HPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMK 197
HP+LE E+ + +ER D +V+GPGLGRD E +EI++
Sbjct: 61 HPLLETDIE------------------ELLELLERADAVVIGPGLGRD----EEAAEILE 98
Query: 198 HARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPE 257
A + P+V+D D L L+ + L+ Y VLTP+ E+ RL+ ++ DR A
Sbjct: 99 KALAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGEFARLLGALVEEIQADRLA-- 156
Query: 258 LLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSP-RRCGGQGDILSGSVAVFLSWA 316
A G T++ KG +I+D + V+ G+P GG GD+L+G +A L+
Sbjct: 157 -AAREAAAKLGATVVLKGAVTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQG 215
Query: 317 RAKGKA 322
+ +A
Sbjct: 216 LSPLEA 221
>gnl|CDD|223141 COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport
and metabolism].
Length = 284
Score = 187 bits (477), Expect = 8e-57
Identities = 86/246 (34%), Positives = 125/246 (50%), Gaps = 32/246 (13%)
Query: 74 PVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSP 133
P DP HKG G++ +IGG R YTGAP AA++AL+ GA L + +AA +KSY P
Sbjct: 21 PPRDPDSHKGDYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASALKSYLP 80
Query: 134 ELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVS 193
EL+V + + L E + +ER D +V+GPGLGRD
Sbjct: 81 ELMVIEVEGKK------------------LLEERELVERADAVVIGPGLGRDAE----GQ 118
Query: 194 EIMKHARQSN-VPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVND 252
E +K S+ P+V+D D L L+ DL+ VLTP+ E+ RL L EV++
Sbjct: 119 EALKELLSSDLKPLVLDADALNLLAELPDLLDER-KVVLTPHPGEFARL----LGTEVDE 173
Query: 253 --RDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSV 309
D E + LA + G V ++ KG +I+D + V+ G+P GG GD+L+G +
Sbjct: 174 IEVDRLEAARELAAKYGAV-VVLKGAVTVIADPDGEVFVNPTGNPGMATGGTGDVLAGII 232
Query: 310 AVFLSW 315
L+
Sbjct: 233 GALLAQ 238
>gnl|CDD|189911 pfam01256, Carb_kinase, Carbohydrate kinase. This family is
related to pfam02110 and pfam00294 implying that it also
is a carbohydrate kinase. (personal obs Yeats C).
Length = 242
Score = 155 bits (393), Expect = 5e-45
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 29/234 (12%)
Query: 90 VIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISG 149
VIGG ++YTGAP AA++AL+ GA L V +A V+KS PE++VHP+ E S +
Sbjct: 3 VIGGSKDYTGAPLLAALAALRSGAGLVSVATDSEAIAVLKSPLPEVMVHPLPETSSILEK 62
Query: 150 LEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVID 209
L R+D +V+GPGLGRD ++ + P+VID
Sbjct: 63 L--------------------SRYDAVVIGPGLGRDEK----GKAALEEVLAKDCPLVID 98
Query: 210 GDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGV 269
D L L+ + + + VLTP+ E++RL D E + LA+++ G
Sbjct: 99 ADALNLLAINNEKPAREGPTVLTPHPGEFERLCGLAGILG---DDRLEAARELAQKLNG- 154
Query: 270 TILQKGKSDLISDGEIAKSVSIYGSP-RRCGGQGDILSGSVAVFLSWARAKGKA 322
TIL KG +I+ ++ G+ GG GD+L+G + L+ A
Sbjct: 155 TILLKGNVTVIAAPGGEVWINSTGNSALAKGGSGDVLAGLIGGLLAQNEDPYDA 208
>gnl|CDD|232868 TIGR00196, yjeF_cterm, yjeF C-terminal region, hydroxyethylthiazole
kinase-related. E. coli yjeF has full-length orthologs
in a number of species, all of unknown function.
However, yeast YNL200C is homologous and corresponds to
the N-terminal region while yeast YKL151C and B.
subtilis yxkO correspond to this C-terminal region only
[Unknown function, General].
Length = 271
Score = 154 bits (391), Expect = 2e-44
Identities = 80/242 (33%), Positives = 131/242 (54%), Gaps = 31/242 (12%)
Query: 74 PVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSP 133
P+ DP+ HKGQ G++ +IGG +Y+GAP AA++AL+ GA L V ++ +I S SP
Sbjct: 13 PLRDPNSHKGQYGRVLIIGGSDDYSGAPLLAALAALRAGAGLVTVAAPENVITLINSVSP 72
Query: 134 ELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVS 193
ELIVH + + E ++ +ER+D +V+GPGLG+DP + V
Sbjct: 73 ELIVHRLGW-------------------KVDEDEELLERYDVVVIGPGLGQDPSFKKAVE 113
Query: 194 EIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDR 253
E+++ + P+V+D D L L+T D V +LTP+ E+KRL+ DR
Sbjct: 114 EVLE----LDKPVVLDADALNLLT--YDSVKREGEVILTPHPGEFKRLLGVNE--IQGDR 165
Query: 254 DAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSP-RRCGGQGDILSGSVAVF 312
E Q +A+++ V ++ KG +D+I+ + ++ G+ GG GD+L+G +
Sbjct: 166 --LEAAQDIAQKLQAV-VVLKGAADVIAAPDGDLWINKTGNAALAKGGTGDVLAGLIGGL 222
Query: 313 LS 314
L+
Sbjct: 223 LA 224
>gnl|CDD|182554 PRK10565, PRK10565, putative carbohydrate kinase; Provisional.
Length = 508
Score = 94.7 bits (236), Expect = 4e-21
Identities = 72/257 (28%), Positives = 117/257 (45%), Gaps = 45/257 (17%)
Query: 64 DAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123
DAE + + + P P+ HKG G++ +IGG GA A +AL+ GA L V +
Sbjct: 234 DAEQLSQWLKP-RRPTSHKGDHGRLLIIGGDHGTAGAIRMAGEAALRSGAGLVRVLTRSE 292
Query: 124 AAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLG 183
+ + PEL+VH + +S +++ +E D +V+GPGLG
Sbjct: 293 NIAPLLTARPELMVHELTPDS---------------------LEESLEWADVVVIGPGLG 331
Query: 184 RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLA----VLTPNVNEYK 239
+ E + ++ P++ D D L +L++ P V+TP+ E
Sbjct: 332 QQ----EWGKKALQKVENFRKPMLWDADAL-------NLLAINPDKRHNRVITPHPGEAA 380
Query: 240 RLVQKVLNCEVNDRDAPELL--QSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSP-R 296
RL L C V + ++ LL + L K+ GGV +L KG +I+ A ++ G+
Sbjct: 381 RL----LGCSVAEIESDRLLSARRLVKRYGGVVVL-KGAGTVIAAEPDALAIIDVGNAGM 435
Query: 297 RCGGQGDILSGSVAVFL 313
GG GD+LSG + L
Sbjct: 436 ASGGMGDVLSGIIGALL 452
>gnl|CDD|225056 COG2145, ThiM, Hydroxyethylthiazole kinase, sugar kinase family
[Coenzyme metabolism].
Length = 265
Score = 48.8 bits (117), Expect = 1e-06
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 185 DPYLLECVSEIMKHARQSNVPIVID----GDGLFLVTNSIDLVSGYPLAVLTPNVNEYKR 240
++ + +K A +S P+V+D G F +++L++ A + N +E
Sbjct: 67 SAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAA 126
Query: 241 LV-----QKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIY-GS 294
L K ++ DA E + A++ G V ++ G+ D ISDG + V I+ GS
Sbjct: 127 LAGEAGGGKGVDAGDGAADAIEAAKKAAQKYGTV-VVVTGEVDYISDGT--RVVVIHNGS 183
Query: 295 P--RRCGGQGDILSGSVAVFLS 314
P + G G +L VA FL+
Sbjct: 184 PLLGKITGTGCLLGAVVAAFLA 205
>gnl|CDD|238575 cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz)
kinase catalyzes the phosphorylation of the
hydroxylgroup of Thz. A reaction that allows cells to
recycle Thz into the thiamine biosynthesis pathway, as
an alternative to its synthesis from cysteine, tyrosine
and 1-deoxy-D-xylulose-5-phosphate.
Length = 242
Score = 45.2 bits (108), Expect = 2e-05
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 159 SSKILAEVDKWMERF----DCLVVGPGLGR-DPYLLECVSEIMKHARQSNVPIVIDGDGL 213
+S I+++ + +E LV+ +G +E + + K A Q P+V+D
Sbjct: 32 ASPIMSDAPEEVEELAKIAGALVIN--IGTLTSEQIEAMLKAGKAANQLGKPVVLD---- 85
Query: 214 FLV--------TNSI-DLVSGYPLAVLTPNVNEYKRLV------QKVLNCEVNDRDAPEL 258
V T +L++ V+ N +E L + V + ++ DA EL
Sbjct: 86 -PVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALAGLTGLGKGVDSSSSDEEDALEL 144
Query: 259 LQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIY-GSPR--RCGGQGDILSGSVAVFLSW 315
++LA++ G V ++ G+ D I+DGE + V + G P + G G +L +A FL+
Sbjct: 145 AKALARKYGAV-VVVTGEVDYITDGE--RVVVVKNGHPLLTKITGTGCLLGAVIAAFLAV 201
Query: 316 ARAKGKATTR--LYYNLS 331
+A L Y ++
Sbjct: 202 GDDPLEAAVSAVLVYGIA 219
>gnl|CDD|236477 PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.
Length = 263
Score = 42.5 bits (101), Expect = 2e-04
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 185 DPYLLECVSEIMKHARQSNVPIVID--GDG-LFLVTNSI-DLVSGYPLAVLTPNVNEYKR 240
+E + K A ++ P+V+D G G T +L++ AV+ N +E
Sbjct: 66 TEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAA 125
Query: 241 LVQKVLNCEV-------NDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIY- 292
L + E DA E+ ++ AK+ G V ++ G+ D I+DGE + VS++
Sbjct: 126 LAGE--AAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVT-GEVDYITDGE--RVVSVHN 180
Query: 293 GSP--RRCGGQGDILSGSVAVFLS 314
G P + G G +LS VA F +
Sbjct: 181 GHPLMTKVTGTGCLLSAVVAAFAA 204
>gnl|CDD|238574 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of
vitamin B1. The first step is the phosphorylation of the
hydroxyl group of HMP to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate
(HMP-P) and then the phophorylation of HMP-P to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine
pyrophosphate (HMP-PP), which is the substrate for the
thiamine synthase coupling reaction.
Length = 242
Score = 38.3 bits (90), Expect = 0.004
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 27/149 (18%)
Query: 190 ECVSEIMKHARQSNVPIVID------GDGLFLVTNSIDLVSGY--PLA-VLTPNVNEYKR 240
E V+E +K ++P+V+D L ++I+ + PLA ++TPN+ E +
Sbjct: 84 EAVAEALK--DYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAEL 141
Query: 241 LVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKG---KSD-----LISDGEIAKSVSIY 292
L + E + A + L +L G +L KG D L G + S
Sbjct: 142 LTGLEIATEEDMMKAAKALLAL----GAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPR 197
Query: 293 GSPRRCGGQGDILSGSVAVFLSWARAKGK 321
+ G G LS ++A L AKG
Sbjct: 198 IDTKNTHGTGCTLSSAIAANL----AKGL 222
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 38.4 bits (90), Expect = 0.004
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 23/166 (13%)
Query: 162 ILAEVDKWMERFDCLVVG----PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVT 217
L ++ +E D +V+ PG+ D Y +E+++ RQ +++D G L
Sbjct: 119 FLEQLKALLESDDIVVLSGSLPPGVPPDAY-----AELIRILRQQGAKVILDTSGEAL-- 171
Query: 218 NSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSL-AKQIGGVTILQKGK 276
+ + P + PN E + L + L D + + L A+ I V +
Sbjct: 172 --LAALEAKPWLI-KPNREELEALFGRELT---TLEDVIKAARELLAEGIENVIVSLGAD 225
Query: 277 SDLISDGEIAKSVSIYGSPRRCG-GQGDILSGSVAVFLSWARAKGK 321
L+ E S G GD + VA FL+ KGK
Sbjct: 226 GALLVTAEGVYFASPPKVQVVSTVGAGDSM---VAGFLA-GLLKGK 267
>gnl|CDD|240375 PTZ00347, PTZ00347, phosphomethylpyrimidine kinase; Provisional.
Length = 504
Score = 38.4 bits (89), Expect = 0.006
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVID-------GDGLFLV 216
A++D M F+ VV GL LE V E +K N+P+V+D GD L
Sbjct: 289 AQIDSVMSDFNISVVKLGLVPTARQLEIVIEKLK-----NLPMVVDPVLVATSGDDLVAQ 343
Query: 217 TNSIDLVSGY-----PLA-VLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAK---QIG 267
N+ D+++ Y P+A ++TPN+ E +R++ + ++ A+ Q G
Sbjct: 344 KNADDVLAMYKERIFPMATIITPNIPEAERIL------GRKEITGVYEARAAAQALAQYG 397
Query: 268 GVTILQKGKSDLISDGEIAKSV 289
+L KG DLI D E + V
Sbjct: 398 SRYVLVKGGHDLI-DPEACRDV 418
>gnl|CDD|188074 TIGR00694, thiM, hydroxyethylthiazole kinase. This model
represents the hydoxyethylthiazole kinase, ThiM, of a
number of bacteria, and C-terminal domains of
bifunctional thiamine biosynthesis proteins of
Saccharomyces cerevisiae and Schizosaccharomyces pombe,
in which the N-terminal domain corresponds to the
bacterial thiamine-phosphate pyrophosphorylase (EC
2.5.1.3), ThiE [Biosynthesis of cofactors, prosthetic
groups, and carriers, Thiamine].
Length = 249
Score = 36.9 bits (86), Expect = 0.012
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 25/188 (13%)
Query: 185 DPYLLECVSEIMKHARQSNVPIVID----GDGLFLVTNSIDLVSGYPLAVLTPNVNEYKR 240
D +E + K A + P+V+D G F S++L+S +A + N E
Sbjct: 61 DKESIEAMIAAGKSANELGKPVVLDPVGVGATKFRTETSLELLSEGRVAAIKGNAGEIAA 120
Query: 241 LVQ-----KVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIY-GS 294
L + ++ DA Q A++ G ++ G+ D +SDG + +I+ G+
Sbjct: 121 LAGEEGKMRGVDSGEGAEDAIRAAQQAAREY-GTVVVVTGEVDYVSDGR--RVYTIHNGT 177
Query: 295 P--RRCGGQGDILSGSVAVFLSWARAKGKATTR--LYYNLSFKLGRQLFCFLSLISCLAT 350
+ G G +L VA F + A L Y ++ +L +
Sbjct: 178 ELLGKVTGSGCLLGSVVAAFCAVEEDPLDAAISACLLYKIAGELAAE--------RSKGP 229
Query: 351 YSFLMRLL 358
SF + LL
Sbjct: 230 GSFHVELL 237
>gnl|CDD|145326 pfam02110, HK, Hydroxyethylthiazole kinase family.
Length = 246
Score = 35.8 bits (83), Expect = 0.023
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 185 DPYLLECVSEIMKHARQSNVPIVID----GDGLFLVTNSIDLVSGYPLAVLTPNVNEYKR 240
D +E + +K A + VP+V+D G F +++L+ +A + N E
Sbjct: 61 DKERIEAMIAAVKSANELGVPVVLDPVGVGATKFRTETALELLRSVGVAAIRGNAGEILA 120
Query: 241 LVQKVLNCEVNDRDAPE-------LLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIY- 292
L + + D+ E Q A++ G ++ G+ D +SDG ++ +I+
Sbjct: 121 LAGE--EGLMRGVDSGEGATDAIRAAQQAARKY-GTVVVVTGEVDYVSDGR--RTYTIHN 175
Query: 293 GSP--RRCGGQGDILSGSVAVFLSWARAKGKATTRLYYNLSFKLGRQLFCFLSLISCLAT 350
G+ R G G +L VA F + A + +K+ + L+
Sbjct: 176 GTELLGRITGSGCLLGAVVAAFCAVPTDPLFAAASAC--VLYKIAGE----LAAERSKGP 229
Query: 351 YSFLMRLL 358
SF LL
Sbjct: 230 GSFHPELL 237
>gnl|CDD|130298 TIGR01231, lacC, tagatose-6-phosphate kinase. This enzyme is part
of the tagatose-6-phosphate pathway of lactose
degradation [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 309
Score = 34.1 bits (78), Expect = 0.098
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 42/159 (26%)
Query: 134 ELIVHPILEESYNISGLEDEERRCIS-------SKIL--------AEVDKWMERFDCLV- 177
EL I Y ISG E R CI+ ++IL E +++ F+ L+
Sbjct: 69 ELDHSDIKHAFYKISG---ETRNCIAILHEGQQTEILEQGPEISNQEAAGFLKHFEQLLE 125
Query: 178 ----------VGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYP 227
+ GL +D Y ++I++ + VP+V+D G L T L +
Sbjct: 126 KVEVVAISGSLPKGLPQDYY-----AQIIERCQNKGVPVVLDCSGATLQTV---LENPAK 177
Query: 228 LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQI 266
V+ PN+ E +L+ + L D L Q+L++ +
Sbjct: 178 PTVIKPNIEELSQLLNQEL-----TEDLESLKQALSQPL 211
>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase;
Provisional.
Length = 495
Score = 33.8 bits (78), Expect = 0.14
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 166 VDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIV-IDGDGLFLVTNSIDLV- 223
V + M + LVVG P LE +E+++ +R+ +PIV +G+ + LV+ S DL
Sbjct: 161 VSEVMTPREKLVVG----NTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRS-DLKK 215
Query: 224 -SGYPLAVLTPN 234
GYP A L N
Sbjct: 216 NRGYPNASLDSN 227
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases
that accept a wide variety of substrates, including
carbohydrates and aromatic small molecules, all are
phosphorylated at a hydroxyl group. The superfamily
includes ribokinase, fructokinase, ketohexokinase,
2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase,
the minor 6-phosphofructokinase (PfkB),
inosine-guanosine kinase, and adenosine kinase. Even
though there is a high degree of structural conservation
within this superfamily, their multimerization level
varies widely, monomeric (e.g. adenosine kinase),
dimeric (e.g. ribokinase), and trimeric (e.g THZ
kinase).
Length = 196
Score = 33.2 bits (76), Expect = 0.15
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 173 FDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVID---GDGLFLVTNSIDLVSGYPLA 229
D +V+ E V + ++ AR+ VP+V+D L+ G +
Sbjct: 58 ADAVVISGLS----PAPEAVLDALEEARRRGVPVVLDPGPRAVRLDGEELEKLLPG--VD 111
Query: 230 VLTPNVNEYKRLV-QKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLIS--DGEIA 286
+LTPN E + L ++ L + A L L+K V + K +++ G
Sbjct: 112 ILTPNEEEAEALTGRRDLEVKEAAEAAALL---LSKGPKVVIVTLGEKGAIVATRGGTEV 168
Query: 287 KSVSIYGSPRRCGGQGDILSGSVAVFL 313
+ G GD ++A L
Sbjct: 169 HVPAFPVKVVDTTGAGDAFLAALAAGL 195
>gnl|CDD|183513 PRK12413, PRK12413, phosphomethylpyrimidine kinase; Provisional.
Length = 253
Score = 32.7 bits (75), Expect = 0.24
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 222 LVSGYPL-AVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSL-AKQI---GGVTILQKGK 276
L+ +P V+TPN+ E + L K + + ++A + L L AK + GG + QK
Sbjct: 123 LIQFFPYVTVITPNLVEAELLSGKEIKTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKA 182
Query: 277 SDLISDGEIAKSVSIYGSP 295
DL DG K I SP
Sbjct: 183 IDLFYDG---KEFVILESP 198
>gnl|CDD|219893 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase. This
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate
(TPP) synthesis pathway, TPP is an essential cofactor
for many enzymes.
Length = 246
Score = 32.9 bits (76), Expect = 0.24
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 36/154 (23%)
Query: 190 ECVSEIMKHARQSNVPIVID------GDGLFLVTNSIDLVSGY--PLA-VLTPNVNEYKR 240
E V+E + VP+V+D L +I+ + PLA ++TPN+ E +
Sbjct: 76 EAVAEKLDKY---GVPVVLDPVMVAKSGDSLLDPEAIEALREELLPLATLITPNLPEAEA 132
Query: 241 LVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKG---------KSDLISDGEIAKSVSI 291
L + + + ++A + L L G +L KG D++ DG
Sbjct: 133 LTGRKIKTLEDMKEAAKKLLEL----GAKAVLIKGGHLEGEEAVVVDVLYDGG---GFFT 185
Query: 292 YGSPR----RCGGQGDILSGSVAVFLSWARAKGK 321
+ +PR G G LS ++A L AKG
Sbjct: 186 FEAPRIPTKNTHGTGCTLSAAIAAEL----AKGL 215
>gnl|CDD|183903 PRK13230, PRK13230, nitrogenase reductase-like protein; Reviewed.
Length = 279
Score = 32.4 bits (74), Expect = 0.29
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 254 DAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSP 295
DAP++++ AK+IG I + S++I++ EI I +P
Sbjct: 189 DAPDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYAP 230
>gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional.
Length = 424
Score = 32.9 bits (75), Expect = 0.30
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 144 SYNISGLEDEERRCISSKILAEVDKWMERFDCL-------VVGPGLGRDPYL--LECVSE 194
SY + L DEE+R K + E +K ME + L V GP PY L +
Sbjct: 140 SYGMVDLGDEEKR---EKEIKETEKLMEFIEKLNSPRVHFVFGP---HAPYTCSLALLKW 193
Query: 195 IMKHARQSNVPIVI 208
+ + AR+ N I I
Sbjct: 194 VREKAREWNKLITI 207
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose
6-phosphate pathway, which responsible for breakdown of
the galactose moiety during lactose metabolism by
bacteria such as L. lactis.
Length = 289
Score = 32.5 bits (75), Expect = 0.34
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 163 LAEVDKWMERFDCLVVG----PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTN 218
L ++ +++ D +V+ PG+ D Y +E+++ AR+ +++D G L
Sbjct: 119 LEKLKALLKKGDIVVLSGSLPPGVPADFY-----AELVRLAREKGARVILDTSGEAL--- 170
Query: 219 SIDLVSGYPLAVLTPNVNEYKRLVQKVLNCE 249
+ ++ P ++ PN E + L + L E
Sbjct: 171 -LAALAAKPF-LIKPNREELEELFGRPLGDE 199
>gnl|CDD|223428 COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine
kinase [Coenzyme metabolism].
Length = 263
Score = 31.4 bits (72), Expect = 0.65
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 31/168 (18%)
Query: 173 FDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVID------GDGLFLVTNSIDLVSGY 226
V G+ ++E V+E +K + P+V+D L +++ +
Sbjct: 71 IPVDAVKTGMLGSAEIIEVVAEKLK--KYGIGPVVLDPVMVAKSGDPLLDEEAVEALREE 128
Query: 227 --PLA-VLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKG------KS 277
PLA V+TPN+ E + L ++ + + L ++G +L KG
Sbjct: 129 LLPLATVVTPNLPEAEALSGLP---KIKTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAV 185
Query: 278 DLISDGEIAKSVSIYGSPR----RCGGQGDILSGSVAVFLSWARAKGK 321
D++ DG S + +PR G G LS ++A L AKG
Sbjct: 186 DVLYDG---GSFYTFEAPRIPTKNTHGTGCTLSAAIAANL----AKGL 226
>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose
1-phosphate adenyltransferase; Provisional.
Length = 473
Score = 31.7 bits (73), Expect = 0.69
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 189 LECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLA-VLTPNVNEYKRLVQKV 245
L V +++ AR++ VP++ID G D Y A +LTPN++E++ +V K
Sbjct: 157 LASVQAMIQLARKAGVPVLIDPKG-------TDF-ERYRGATLLTPNLSEFEAVVGKC 206
>gnl|CDD|220254 pfam09471, Peptidase_M64, IgA Peptidase M64. This is a family of
highly selective metallo-endopeptidases. The primary
structure of the Clostridium ramosum IgA proteinase
shows no significant overall similarity to any other
known metallo-endopeptidase.
Length = 255
Score = 31.2 bits (71), Expect = 0.80
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 25/111 (22%)
Query: 47 PRRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAG----KIAVIGGCREYTGAPY 102
P + G+ + D + R + + + + + + ++ +Y G
Sbjct: 138 PSEGVHRDTALGSYY--DCFDSERYLCTNENKAINDAASAAPYDYVLILVNTAKYGGGGI 195
Query: 103 FAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDE 153
+ + AD S++ + VH E ++ +GL DE
Sbjct: 196 YNLYGT--VTAD--------------NSWASYIAVH---EFGHSFAGLADE 227
>gnl|CDD|180840 PRK07105, PRK07105, pyridoxamine kinase; Validated.
Length = 284
Score = 31.0 bits (71), Expect = 0.95
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVID---GD-GLF-------LVTNSI 220
+FD + G LG P ++ VS+ +K+ ++ ++ +V+D GD G +V
Sbjct: 75 KFDAIYSG-YLGS-PRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMR 132
Query: 221 DLVSGYPLA-VLTPNVNEYKRLVQK-VLNCEVNDRDAPELLQSLAK 264
L+ A V+TPN+ E L+ K L ++ + +LL+ LA
Sbjct: 133 KLIQ---KADVITPNLTEACLLLDKPYLEKSYSEEEIKQLLRKLAD 175
>gnl|CDD|238920 cd01945, ribokinase_group_B, Ribokinase-like subgroup B. Found in
bacteria and plants, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time. .
Length = 284
Score = 31.1 bits (71), Expect = 0.98
Identities = 45/194 (23%), Positives = 63/194 (32%), Gaps = 41/194 (21%)
Query: 83 GQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYS---PELIVHP 139
GQA I V+G + G A ++A G D S + A I S + +
Sbjct: 51 GQARLIGVVGD--DAIGRLILAELAAE--GVDTSFIVVAPGARSPISSITDITGDRATIS 106
Query: 140 ILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHA 199
I + + IL D ++V D E + + A
Sbjct: 107 I------TAIDTQAAPDSLPDAILG-------GADAVLV------DGRQPEAALHLAQEA 147
Query: 200 RQSNVPIVIDGDGLFLVTNSIDLVSGYPL---AVLTPNVNEYKRLVQKVLNCEVNDRDAP 256
R +PI +D DG L L PL A+ + N N D +A
Sbjct: 148 RARGIPIPLDLDGGGLRVLEELL----PLADHAICSENFLR--------PNTGSADDEAL 195
Query: 257 ELLQSLAKQIGGVT 270
ELL SL VT
Sbjct: 196 ELLASLGIPFVAVT 209
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 29.5 bits (67), Expect = 1.3
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 147 ISGLEDEERRCI--SSKILAEVDKWMERFD 174
+ E +R +++ +EVD++ME FD
Sbjct: 2 LKKWVAEYKRSRPDPAELQSEVDEYMEEFD 31
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 454
Score = 30.6 bits (69), Expect = 1.5
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 134 ELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVS 193
++IV+ L+ + +I E + I A D + D +V+ PG+ P
Sbjct: 30 DVIVYDDLKANRDIF-----EELYSKNAIAALSDSRWQNLDKIVLSPGI---PL----TH 77
Query: 194 EIMKHARQSNVPIVIDGDGLF 214
EI+K A+ N+PI D D LF
Sbjct: 78 EIVKIAKNFNIPITSDIDLLF 98
>gnl|CDD|179177 PRK00945, PRK00945, acetyl-CoA decarbonylase/synthase complex
subunit epsilon; Provisional.
Length = 171
Score = 28.5 bits (64), Expect = 4.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 176 LVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211
LVVG L D LL+ +I K A N+P+ G
Sbjct: 39 LVVGSLLLDDEELLDRAVKIAKKA---NIPVAATGG 71
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in
concert with the fructose-specific phosphotransferase
system (PTS) which imports fructose as
fructose-1-phosphate. The action of
1-phosphofructokinase results in
beta-D-fructose-1,6-bisphosphate and is an entry point
into glycolysis (GenProp0688).
Length = 304
Score = 29.1 bits (66), Expect = 4.1
Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 30/151 (19%)
Query: 174 DCLVVG----PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLA 229
D LV+ PG+ D Y E++ AR+ +++D G L D + P
Sbjct: 129 DWLVLSGSLPPGVPPDFYA-----ELIALAREKGAKVILDTSGEALR----DGLKAKPF- 178
Query: 230 VLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSL-AKQIGGVTILQKGKSDLISDGEIAKS 288
++ PN E + L + L + E + L V I L+ E A
Sbjct: 179 LIKPNDEELEELFGRELK---TLEEIIEAARELLDLGAENVLISLGADGALLVTKEGA-- 233
Query: 289 VSIYGSPRRCG-----GQGDILSGSVAVFLS 314
++ P + G GD + VA FL+
Sbjct: 234 --LFAQPPKGEVVSTVGAGDSM---VAGFLA 259
>gnl|CDD|224671 COG1757, NhaC, Na+/H+ antiporter [Energy production and
conversion].
Length = 485
Score = 29.2 bits (66), Expect = 4.4
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 304 ILSGSVAVFLSWARAKGKATTRLYYNLSFKLGRQLFCFLSLISCLATYSFLMR 356
IL G A +WA A G +YY L F I+ + S
Sbjct: 88 ILLGIGAAIAAWA-ASGIVPALVYYGLKLISPSIFFFDDFFITAIV--STATG 137
>gnl|CDD|176982 CHL00041, rps11, ribosomal protein S11.
Length = 116
Score = 27.5 bits (62), Expect = 6.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 162 ILAEVDKWMERFDCLVVGPGLGRD 185
I +D+ M+R + ++ GPGLGRD
Sbjct: 66 IRTVIDQGMKRAEVMIKGPGLGRD 89
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1025
Score = 29.0 bits (65), Expect = 6.2
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 239 KRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQK--GKSDLISDGEIAKSVS---IYG 293
KR+ VLN + +DR+A E++ A Q G VTI G+ I GE + + I G
Sbjct: 621 KRIAHNVLNAKQHDREA-EIVAE-AGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG 678
Query: 294 SPR------------RCGGQGD 303
S R R G QGD
Sbjct: 679 SERHESRRIDRQLRGRAGRQGD 700
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 28.8 bits (65), Expect = 6.7
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 338 LFCFLSLISCLA---TYSFLMRLLQSDE-SNGVGLHCWIC 373
L LS I L+ Y ++R + +E S +G+ W+
Sbjct: 500 LMAILSFIGFLSAIPLYMIVLRCVPPEEKSLALGVQ-WLL 538
>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I.
Length = 186
Score = 28.0 bits (63), Expect = 7.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPI 206
AE + D +++ PG G P L E +K R++ +PI
Sbjct: 33 AEEILELN-PDGIIISPGPG-SPGALGGAIEAIKELRENKIPI 73
>gnl|CDD|224955 COG2044, COG2044, Predicted peroxiredoxins [General function
prediction only].
Length = 120
Score = 27.3 bits (61), Expect = 7.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 96 EYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHP 139
E AP+ A +A +G D+ +F T D ++K E I HP
Sbjct: 17 ERAYAPFVMATAAASMGYDV-TIFFTMDGVTLVKKKVAEKIKHP 59
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation [Amino acid biosynthesis, Glutamate
family].
Length = 459
Score = 28.1 bits (63), Expect = 9.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 228 LAVLTPNVNEYKRLV 242
A P VN YKRLV
Sbjct: 301 AAFTNPTVNSYKRLV 315
>gnl|CDD|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I. RfaE
is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in E.
coli, and separate proteins in some other genome. The
longer, N-terminal domain I (this family) is suggested
to act in D-glycero-D-manno-heptose 1-phosphate
biosynthesis, while domain II (TIGR02199) adds ADP to
yield ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 315
Score = 28.0 bits (63), Expect = 9.7
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 31/141 (21%)
Query: 153 EERRCISS----KILAEVDKWMERFDCLVV---GPGLGRDPYLLECVSEIMKHARQSNVP 205
EER I++ ++LA + + + D +V+ G P + V E++ AR+ P
Sbjct: 120 EERDPINAELEARLLAAIREQLASADAVVLSDYAKG-VLTPRV---VQEVIAAARKHGKP 175
Query: 206 IVIDGDGLFLVTNSIDLVSGYPLA-VLTPNVNEYKRLVQKVLNCE---------VNDRDA 255
+++D G S Y A ++TPN E + V + + D
Sbjct: 176 VLVDPKGKDF--------SRYRGATLITPNRKEAEAAVGACDTEAELVQAAEKLLEELDL 227
Query: 256 PELLQSLAKQIGGVTILQKGK 276
LL + +++ G+T+ +
Sbjct: 228 EALLVTRSEK--GMTLFTREG 246
>gnl|CDD|213830 TIGR03576, pyridox_MJ0158, pyridoxal phosphate enzyme, MJ0158
family. Members of this archaeal protein family are
pyridoxal phosphate enzymes of unknown function.
Sequence similarity to SelA, a bacterial enzyme of
selenocysteine biosynthesis, has led to some members
being misannotated as functionally equivalent, but
selenocysteine is made on tRNA in Archaea by a two-step
process that does not involve a SelA homolog [Unknown
function, Enzymes of unknown specificity].
Length = 346
Score = 27.8 bits (62), Expect = 9.9
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Query: 94 CREYTGAPYFAAISALKI-GADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLED 152
RE+ G P + + A L+ + + + Y PE HP + S ++G E
Sbjct: 63 GREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEY 122
Query: 153 EERRCISS-KILAEVDKWMERFDCLVVGPGLGRDPYLLECVSE-----IMKHARQSNVPI 206
E +S K + LVV G D L+ VSE ++K A+ +
Sbjct: 123 FESDELSELKKIDGTS--------LVVITGSTMD---LKVVSEEDLKRVIKQAKSKEAIV 171
Query: 207 VID 209
++D
Sbjct: 172 LVD 174
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 467
Score = 28.0 bits (63), Expect = 10.0
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 31/140 (22%)
Query: 151 EDEERRCISSKILAEVDKWMERFDCLVV---GPGLGRDPYLLECVSEIMKHARQSNVPIV 207
E++ +K+L ++ ++ FD LV+ G+ L V +++ AR++ +P++
Sbjct: 122 EEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGV------LTNVQKMIDLAREAGIPVL 175
Query: 208 IDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIG 267
+D G + G L +TPN+ E++ V K ++ + E Q L +++
Sbjct: 176 VDPKG-----KDFEKYRGATL--ITPNLKEFEEAVGK----CKSEEELEERGQKLKEELD 224
Query: 268 -----------GVTILQKGK 276
G+T+ Q+GK
Sbjct: 225 LSALLVTRSEKGMTLFQEGK 244
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,207,602
Number of extensions: 1994407
Number of successful extensions: 1801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1771
Number of HSP's successfully gapped: 54
Length of query: 396
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 297
Effective length of database: 6,546,556
Effective search space: 1944327132
Effective search space used: 1944327132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.2 bits)