RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016016
(396 letters)
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 278
Score = 128 bits (322), Expect = 5e-35
Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 19/259 (7%)
Query: 66 ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
++R + P HKG GK+ +I G R Y+GAP + + +LK+G L +
Sbjct: 2 REMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQN 61
Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
+ S PELI PI E S L E + + D + +GPGLG +
Sbjct: 62 LIATSRFPELISVPIDTEKGFFSLQN-----------LQECLELSKDVDVVAIGPGLGNN 110
Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKV 245
++ E V+E +K P VID D + ++ L AVLTP+ E RLV+
Sbjct: 111 EHVREFVNEFLKTL---EKPAVIDADAINVLDT-SVLKERKSPAVLTPHPGEMARLVK-- 164
Query: 246 LNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDIL 305
+ + EL + AK+ V +L K + +++DGE + GG GD+L
Sbjct: 165 -KTVGDVKYNYELAEEFAKENDCVLVL-KSATTIVTDGEKTLFNITGNTGLSKGGSGDVL 222
Query: 306 SGSVAVFLSWARAKGKATT 324
+G +A F++ + +A+T
Sbjct: 223 TGMIAGFIAQGLSPLEAST 241
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis
[TaxId: 1423]}
Length = 275
Score = 108 bits (270), Expect = 1e-27
Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 29/250 (11%)
Query: 66 ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
E +R P D HKG G ++ G + GA A + A++ G + +++
Sbjct: 7 EEHVRATLPERDAESHKGTYGTALLLAGSDDMPGAALLAGLGAMRSGLGKLVIGTSENVI 66
Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
P+I PE + + LE E + + +GPGL +
Sbjct: 67 PLIVPVLPEATYWRDGWKKAADAQLE-------------------ETYRAIAIGPGLPQT 107
Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKV 245
E V + + H ++ P+++D L T +LTP+ E+ R+
Sbjct: 108 ----ESVQQAVDHVLTADCPVILDAGALAKRTYPKR----EGPVILTPHPGEFFRMTGVP 159
Query: 246 LNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQGDIL 305
+N R E + A Q+ V +L+ ++ + GG GD L
Sbjct: 160 VNELQKKR--AEYAKEWAAQLQTVIVLKGNQTVIAFPDGDCWLNPTGNGALAKGGTGDTL 217
Query: 306 SGSVAVFLSW 315
+G + L
Sbjct: 218 TGMILGMLCC 227
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 264
Score = 69.2 bits (169), Expect = 6e-14
Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 18/184 (9%)
Query: 160 SKILAEVDKWMERF----DCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFL 215
S ++A ++ +E D +V+ G D + + + A + PIV+D G
Sbjct: 40 SPVMAHAEEELEEMIRLADAVVINIGTL-DSGWRRSMVKATEIANELGKPIVLDPVGAGA 98
Query: 216 V---TNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDR------DAPELLQSLAKQI 266
T + + VL N E L+ + D +A +L + A++
Sbjct: 99 TKFRTRVSLEILSRGVDVLKGNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAARE- 157
Query: 267 GGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVFLSWARAKGKATT 324
T+ G D +SDG G R G G +++ F++ T+
Sbjct: 158 FNTTVAVTGAVDYVSDGRRTF-AVYNGHELLGRVTGTGCMVAALTGAFVAVTEPLKATTS 216
Query: 325 RLYY 328
L
Sbjct: 217 ALVT 220
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Bacillus subtilis [TaxId: 1423]}
Length = 269
Score = 66.9 bits (163), Expect = 4e-13
Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 19/181 (10%)
Query: 160 SKILAEVDKWMERF----DCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFL 215
S ++A + + LV+ G + + K A + VP+++D G
Sbjct: 42 SPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMI-IAGKSANEHGVPVILDPVGAGA 100
Query: 216 V---TNSI-DLVSGYPLAVLTPNVNEYKRLV------QKVLNCEVNDRDAPELLQSLAKQ 265
T S D++ LA + N E V K ++ D L Q A++
Sbjct: 101 TPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQK 160
Query: 266 IGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVFLSWARAKGKAT 323
I G+ D+I+D ++ G + G G +L+ V F + A
Sbjct: 161 -LNTVIAITGEVDVIADTSHVYTLH-NGHKLLTKVTGAGCLLTSVVGAFCAVEENPLFAA 218
Query: 324 T 324
Sbjct: 219 I 219
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 29.3 bits (66), Expect = 0.13
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 124 AAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLV 177
+ + EL V + +Y + + L++V + + L+
Sbjct: 13 EVLFLMTKCTELFVRHLAGAAYTE-EFGQRPGEALKYEHLSQVVNKNKNLEFLL 65
>d1gkma_ a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseudomonas
putida [TaxId: 303]}
Length = 509
Score = 28.0 bits (62), Expect = 2.3
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 5 YGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSL----GGYSDHIEPRRMQDIR------ 54
YG++TGF L S + +AS + Q+ L+ S G D R + ++
Sbjct: 53 YGINTGFGLLASTR---IASHDLENLQRSLVLSHAAGIGAPLDDDLVRLIMVLKINSLSR 109
Query: 55 ---SMSGTTFEADAENVMREITPVLDPSKHKGQAGKIA 89
+ +A V E+ P + G +G +A
Sbjct: 110 GFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLA 147
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 106
Score = 26.3 bits (58), Expect = 2.7
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 161 KILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIV 207
D + FD +V P C + ++K A +P+V
Sbjct: 39 SSAHNKDIALGVFDVVVTDP---------SCPASVLKCAEALQLPVV 76
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 470
Score = 27.7 bits (60), Expect = 2.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 229 AVLTPNVNEYKRLVQKVLNCEVNDRDAP 256
V+ +++ Y +Q V DR P
Sbjct: 62 IVMVADIDSYSPFIQAVFGSAPADRYLP 89
>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
(Petroselinum crispum), PAL1 [TaxId: 4043]}
Length = 692
Score = 26.8 bits (59), Expect = 5.8
Identities = 33/223 (14%), Positives = 56/223 (25%), Gaps = 38/223 (17%)
Query: 5 YGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSL---------GGYSDHIEPRRMQDIR- 54
YGV+TGF + + Q+ LIR L H R +R
Sbjct: 86 YGVTTGFGATSHRRT-----KQGGALQKELIRFLNAGIFGNGSDNTLPHSATRAAMLVRI 140
Query: 55 --------SMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGG-CREYTGAPYFAA 105
+ EA + + + ITP L +G + + TG P A
Sbjct: 141 NTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 200
Query: 106 ISALKIGADLSHVFCTKDAAPVIKSYSPE----LIVHPILEESYNISGLEDEERRCISSK 161
+ + F P+ L+ + L +
Sbjct: 201 VGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILA---- 256
Query: 162 ILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV 204
E + G+ + ++ H Q
Sbjct: 257 ------VLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEA 293
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,466,661
Number of extensions: 68740
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 9
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)